From 3e647f32f3336653ad2b934602419469c2b64f87 Mon Sep 17 00:00:00 2001
From: Jorge Langa <6546145+jlanga@users.noreply.github.com>
Date: Tue, 12 Nov 2024 15:21:27 +0100
Subject: [PATCH] fix: add gzi and fai

---
 workflow/rules/variants/call.smk | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/workflow/rules/variants/call.smk b/workflow/rules/variants/call.smk
index f7890c0..aca52be 100644
--- a/workflow/rules/variants/call.smk
+++ b/workflow/rules/variants/call.smk
@@ -58,6 +58,8 @@ rule variants__call__combine_gvcfs:
         vcf_gzs=get_files_to_genotype,
         reference=REFERENCE / "genome.fa.gz",
         dict_=REFERENCE / "genome.dict",
+        fai=REFERENCE / "genome.fa.gz.fai",
+        gzi=REFERENCE / "genome.fa.gz.gzi",
     output:
         vcf_gz=CALL / "{region}.vcf.gz",
     log: