From 63fc7a4fea2c4f4043d5da88200af849a39b2237 Mon Sep 17 00:00:00 2001
From: Emma Rand <emma.rand@york.ac.uk>
Date: Mon, 5 Feb 2024 10:56:06 +0000
Subject: [PATCH] attmept to fix the error thrown by qc report chunk name: set
 html_report = FALSE

---
 r4babs4/week-2/workshop.qmd | 10 ++++++++++
 1 file changed, 10 insertions(+)

diff --git a/r4babs4/week-2/workshop.qmd b/r4babs4/week-2/workshop.qmd
index 7e9e6948..62ece1d5 100644
--- a/r4babs4/week-2/workshop.qmd
+++ b/r4babs4/week-2/workshop.qmd
@@ -105,6 +105,7 @@ fs[[1]]
 🎬 You can use the `exprs()` function to access the actual data and pipe it to `View()` to show it in a window:
 
 ```{r}
+#|eval: false
 exprs(fs[[1]]) |> View()
 ```
 
@@ -173,11 +174,20 @@ It generates a new flowSet with the problematic events removed along with a fold
 🎬 Run the automated quality control:
 
 ```{r}
+#|echo: false
+fs_clean <- flow_auto_qc(fs, 
+                         html_report = FALSE,
+                         folder_results = "sample-QC")
+```
 
+
+```{r}
+#|eval: false
 fs_clean <- flow_auto_qc(fs, 
                          folder_results = "sample-QC")
 ```
 
+
 ❓ What has been removed through the QC process?
 
 ❓ What is in the folder "sample-QC"?