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references.bib
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@article{knuth84,
author = {Knuth, Donald E.},
title = {Literate Programming},
year = {1984},
issue_date = {May 1984},
publisher = {Oxford University Press, Inc.},
address = {USA},
volume = {27},
number = {2},
issn = {0010-4620},
url = {https://doi.org/10.1093/comjnl/27.2.97},
doi = {10.1093/comjnl/27.2.97},
journal = {Comput. J.},
month = may,
pages = {97–111},
numpages = {15}
}
@article{likert1932,
title = {A technique for the measurement of attitudes},
author = {Likert, R.},
year = {1932},
date = {1932},
journal = {Archives of Psychology},
pages = {55--55},
volume = {22 140}
}
@inbook{drossel2017,
title = {The Use of Tablets in Secondary Schools and Its Relationship with Computer Literacy},
author = {Drossel, Kerstin and Eickelmann, Birgit},
year = {2017},
date = {2017},
publisher = {Springer International Publishing},
pages = {114--124},
doi = {10.1007/978-3-319-74310-3_14},
url = {http://dx.doi.org/10.1007/978-3-319-74310-3_14}
}
@misc{australiancurriculumassessmentandreportingNationalAssessmentProgram2014,
title = {National {{Assessment Program}} \textendash{} {{ICT Literacy}}},
author = {Australian Curriculum, Assessment and Reporting Authority},
year = {2015},
url = {https://nap.edu.au/_resources/D15_8761__NAP-ICT_2014_Public_Report_Final.pdf}
}
@book{bryanWFT,
title = {What {{They Forgot}} to {{Teach You About R}}},
author = {Bryan, Jennifer and Hester, Jim and Pileggi, Shannon and Aja, E. David},
urldate = {2019-09-26},
abstract = {The stuff you need to know about R, besides statistical analysis. The initial impetus for creating these materials is a two-day hands-on workshop. The target learner: Has a moderate amount of R and RStudio experience. Is largely self-taught. Suspects they have drifted into some idiosyncratic habits that may slow them down or make their work products more brittle. Is interested in (re)designing their R lifestyle, to be more effective and more self-sufficient. The in-person workshops are still the primary delivery method for this content, but we've begun recording prose versions of this content, in order to make it more widely available and for participants to refer back to. Warning: these materials absolutely do not constitute a self-contained ``book'', nor do they capture all workshop content. We focus on building holistic and project-oriented workflows that address the most common sources of friction in data analysis, outside of doing the statistical analysis itself.}
}
@article{readxl,
title = {readxl: Read Excel Files},
author = {Wickham, Hadley and Bryan, Jennifer},
year = {2023},
date = {2023},
url = {https://CRAN.R-project.org/package=readxl}
}
@article{tidyverse,
title = {Welcome to the {\textbraceleft}tidyverse{\textbraceright}},
author = {Wickham, Hadley and Averick, Mara and Bryan, Jennifer and Chang, Winston and McGowan, {Lucy D'Agostino} and {François}, Romain and Grolemund, Garrett and Hayes, Alex and Henry, Lionel and Hester, Jim and Kuhn, Max and Pedersen, Thomas Lin and Miller, Evan and Bache, Stephan Milton and {Müller}, Kirill and Ooms, Jeroen and Robinson, David and Seidel, Dana Paige and Spinu, Vitalie and Takahashi, Kohske and Vaughan, Davis and Wilke, Claus and Woo, Kara and Yutani, Hiroaki},
year = {2019},
date = {2019},
pages = {1686},
volume = {4},
doi = {10.21105/joss.01686}
}
@Book{ggplot2,
author = {Hadley Wickham},
title = {ggplot2: Elegant Graphics for Data Analysis},
publisher = {Springer-Verlag New York},
year = {2016},
isbn = {978-3-319-24277-4},
url = {https://ggplot2.tidyverse.org},
}
@Manual{dplyr,
title = {dplyr: A Grammar of Data Manipulation},
author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
year = {2023},
note = {R package version 1.1.0},
url = {https://CRAN.R-project.org/package=dplyr},
}
@ARTICLE{Wickham2014-nl,
title = "Tidy Data",
author = "Wickham, Hadley",
abstract = "A huge amount of effort is spent cleaning data to get it ready
for analysis, but there has been little research on how to make
data cleaning as easy and effective as possible. This paper
tackles a small, but important, component of data cleaning: data
tidying. Tidy datasets are easy to manipulate, model and
visualize, and have a specific structure: each variable is a
column, each observation is a row, and each type of observational
unit is a table. This framework makes it easy to tidy messy
datasets because only a small set of tools are needed to deal
with a wide range of un-tidy datasets. This structure also makes
it easier to develop tidy tools for data analysis, tools that
both input and output tidy datasets. The advantages of a
consistent data structure and matching tools are demonstrated
with a case study free from mundane data manipulation chores.",
journal = "Journal of Statistical Software, Articles",
volume = 59,
number = 10,
pages = "1--23",
year = 2014,
url = "https://vita.had.co.nz/papers/tidy-data.pdf",
}
@Manual{tidyr,
title = {tidyr: Tidy Messy Data},
author = {Hadley Wickham and Davis Vaughan and Maximilian Girlich},
year = {2023},
note = {R package version 1.3.0},
url = {https://CRAN.R-project.org/package=tidyr},
}
@Manual{readr,
title = {readr: Read Rectangular Text Data},
author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
year = {2023},
note = {R package version 2.1.4},
url = {https://CRAN.R-project.org/package=readr},
}
@article{knitr,
title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
author = {Xie, Yihui},
year = {2022},
date = {2022},
url = {https://yihui.org/knitr/}
}
@article{kableExtra,
title = {kableExtra: Construct Complex Table with 'kable' and Pipe Syntax},
author = {Zhu, Hao},
year = {2021},
date = {2021},
url = {https://CRAN.R-project.org/package=kableExtra}
}
@book{allaire2022,
title = {Quarto},
author = {Allaire, J.J. and Teague, Charles and Scheidegger, Carlos and Xie, Yihui and Dervieux, Christophe},
year = {2022},
month = {01},
date = {2022-01},
doi = {10.5281/zenodo.5960048},
url = {https://github.com/quarto-dev/quarto-cli},
note = {DOI: 10.5281/zenodo.5960048}
}
@Manual{R-core,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2024},
url = {https://www.R-project.org/},
}
@article{tukey1949,
title = {Comparing Individual Means in the Analysis of Variance},
author = {Tukey, John W.},
year = {1949},
date = {1949},
journal = {Biometrics},
pages = {99--114},
volume = {5},
number = {2},
doi = {10.2307/3001913},
url = {https://www.jstor.org/stable/3001913},
note = {Publisher: [Wiley, International Biometric Society]}
}
@article{randemma2022,
title = {Cloud-SPAN/00genomics: Cloud-SPAN Genomics Course Overview},
author = {{Rand, Emma}, and {Chong, James}, and {Buenabad-Chavez, Jorge}, and {Cansdale, Annabel}, and {Forrester, Sarah}, and {Greeves, Evelyn}, },
year = {2022},
month = {05},
date = {2022-05-19},
doi = {10.5281/ZENODO.6564314},
url = {https://zenodo.org/record/6564314},
note = {Publisher: Zenodo
Version Number: v1.0.0},
langid = {en}
}
@article{FSA,
title = {FSA: Simple Fisheries Stock Assessment Methods},
author = {Ogle, Derek H. and Doll, Jason C. and Wheeler, A. Powell and Dinno, Alexis},
year = {2023},
date = {2023},
url = {https://CRAN.R-project.org/package=FSA}
}
@article{dunn1964,
title = {Multiple Comparisons Using Rank Sums},
author = {Dunn, Olive Jean},
year = {1964},
month = {08},
date = {1964-08-01},
journal = {Technometrics},
pages = {241--252},
volume = {6},
number = {3},
doi = {10.1080/00401706.1964.10490181},
url = {https://www.tandfonline.com/doi/abs/10.1080/00401706.1964.10490181},
note = {Publisher: Taylor & Francis
{\_}eprint: https://www.tandfonline.com/doi/pdf/10.1080/00401706.1964.10490181}
}
@article{kruskal1952,
title = {Use of Ranks in One-Criterion Variance Analysis},
author = {Kruskal, William H. and Wallis, W. Allen},
year = {1952},
month = {12},
date = {1952-12-01},
journal = {Journal of the American Statistical Association},
pages = {583--621},
volume = {47},
number = {260},
doi = {10.1080/01621459.1952.10483441},
url = {https://www.tandfonline.com/doi/abs/10.1080/01621459.1952.10483441},
note = {Publisher: Taylor & Francis
{\_}eprint: https://www.tandfonline.com/doi/pdf/10.1080/01621459.1952.10483441}
}
@article{emmeans,
title = {emmeans: Estimated Marginal Means, aka Least-Squares Means},
author = {Lenth, Russell V.},
year = {2023},
date = {2023},
url = {https://CRAN.R-project.org/package=emmeans}
}
@article{suárez2009,
title = {Phylogeography and genetic structure of the Canarian common chaffinch (Fringilla coelebs) inferred with mtDNA and microsatellite loci},
author = {{Suárez}, {Nicolás M.} and Betancor, Eva and Klassert, Tilman E. and Almeida, Teresa and {Hernández}, Mariano and Pestano, {José J.}},
year = {2009},
month = {11},
date = {2009-11},
journal = {Molecular Phylogenetics and Evolution},
pages = {556--564},
volume = {53},
number = {2},
doi = {10.1016/j.ympev.2009.07.018},
url = {http://dx.doi.org/10.1016/j.ympev.2009.07.018},
langid = {en}
}
@article{wilcoxon1945,
title = {Individual Comparisons by Ranking Methods},
author = {Wilcoxon, Frank},
year = {1945},
date = {1945},
journal = {Biometrics Bulletin},
pages = {80--83},
volume = {1},
number = {6},
doi = {10.2307/3001968},
url = {https://www.jstor.org/stable/3001968},
note = {Publisher: [International Biometric Society, Wiley]}
}