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CHANGELOG.md

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Changelog

All notable changes to fdmr will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased

Fixed

  • Updated documentation for all functions to reflect better the inputs and outputs - PR #332
  • Fixed an error in model_viewer description - PR #331
  • Added to retrieve_tutorial_data an option to save tutorial data at a user-specified location or in a temporary directory as default - PR #330
  • Fixed model_viewer app to work with random effect models - PR #317
  • Updated plot_map_leaflet to feature the same selection of basemap tiles as mapview and fix features not appearing - PR #310

Added

  • Added ocean heat content mapping tutorial - PR #318

[0.2.0] - 2023-12-19

Fixed

  • Added a function to ensure correct polygon display across the dateline - PR #285

Added

  • Added a new tutorial on loading data from different sources - PR #266
  • Added new geophysical processes tutorial thanks to Alexander Minakov (4minakov) - PR #257
  • Added mouse pointer coordinates header and standard measurement tool - PR #260
  • Added new help explainer to the Help tab of the model_viewer Shiny app - PR #295

Changed

[0.1.1] - 2023-11-01

Added

  • Added the ability to select a custom range for the colour map - PR #218

Fixed

  • Added check for time_variable being passed into model builder Shiny app - PR #216
  • Clear button not clearing all checkboxes in model builder Shiny app - PR #215
  • Corrected code in code pane of model builder Shiny app - PR #208
  • Code displayed in the Code tab of the mesh builder Shiny app couldn't be copied and pasted and used - PR #233

Changed

  • Allowed reversal of colour palette and added raster plot legend in map plotter - PR #229
  • Added markers option to mesh plotter - PR #230
  • Updated the interfaces of the Shiny apps to the use bslib theming - PR #236
  • Code tab added to fdmr::model_viewer so the user can easily reproduce plots - PR #237

[0.1.0] - 2023-10-17

Added

  • This changelog - PR #99
  • Added an INLA FAQ vignette that covers INLA crashes we have encountered in the past - PR #116
  • Building a mesh with the Tibetan lakes data and the mesh_builder Shiny app to the mesh building tutorial - PR #101
  • Clearer documentation on types expected by the mesh_builder tool - PR #101
  • Checks on the data types being passed into the mesh_builder tool - PR #101
  • Ability to plot either polygon or point data on Leaflet map of mesh_builder tool - PR #101
  • The ability to plot model predictions on a leaflet map in the our Model builder Shiny app - PR #147
  • A new Shiny app to parse and plot INLA model output, letting users easily view model parameters and predictions on a map - PR #158

Fixed

  • Read of mean twice from INLA model output instead of reading sd - PR #121
  • Issue with the exposure parameter being selectable when using Gaussian data, updated the model builder Shiny app to reflect this fix in its code output tab - PR #183
  • Bug when trying to plot a map of model predictions without having run a model in the model builder Shiny app - PR #181

Changed

  • Use of rgdal functions migrated to sf equivalents due to rgdal retirement - PR #145
  • Move to use utils::untar instead of archive::extract_archive due to issues on some Linux systems - PR #101
  • The plot_mesh function now uses an interactive Leaflet map with the optional to plot spatial data overlaid - PR #162
  • Use of Intercept updated due to deprecation in INLA - PR #180
  • Replaced use of INLA::inla.mesh.2d with updated fmesher::fm_mesh_2d_inla which is faster - PR #182

Removed

  • plot_interactive_map Shiny app removed due to limited usefulness - PR #166