Development

CI/CD

Extra dependencies need to be installed in order to run Truvari's CI/CD scripts. These scripts help ensure the tool's quality.

pip install pylint,anybadge,coverage

Check code formatting with

python repo_utils/pylint_maker.py

Test the code and generate a coverage report with

bash repo_utils/truvari_ssshtests.sh

Truvari leverages github actions to perform these checks when new code is pushed to the repository. We've noticed that the actions sometimes hangs through no fault of the code. If this happens, cancel and resubmit the job.

git flow

To organize the commits for the repository, we use git-flow. Therefore, develop is the default branch, the latest tagged release is on master, and new, in-development features are within feature/<name>

When contributing to the code, be sure you're working off of develop and have run git flow init.

More information soon.