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Installation
For stable versions of Truvari, use pip
python3 -m pip install truvari
Specific versions can be installed via
python3 -m pip install truvari==3.0.0
See pypi for a history of all distributed releases.
To build Truvari directly, clone the repository and switch to a specific tag.
git clone https://github.com/spiralgenetics/truvari.git
git checkout tags/v3.0.0
python3 setup.py install
To see a list of all available tags, run:
git tag -l
If you have an older clone of the repository, but don't see the version you're looking for in tags, make sure to pull the latest changes:
git pull
git fetch --all --tags
The default branch is develop, which holds in-development changes. This is for developers or those wishing to try experimental features and is not recommended for production. Development is versioned higher than the most recent stable release with an added suffix (e.g. Current stable release is 3.0.0, develop holds 3.1.0-dev). If you'd like to install develop, repeat the steps above but without git checkout tags/v3.0.0. See wiki for details on how branching is handled.
See Development for details on building a docker container.