v2.1.2

[ns-rse]

Various small changes fixing aspects of plotting with regards to DPI and axis scales. Dependencies are updated and improved and igor2 instead of the unmaintained igor is now used for loading .ibw. Linting is improved and considerably faster in the pre-commit pipeline courtesy with ruff rather than flake8 and introducing pydocstyle linting.

Importantly scar removal is now disabled by default, its a time consuming step and should only be enable if you know you have scars in your scans that you want removing.

What's Changed

• Switched to igor2 instead of igor for loading .ibw files which allows unpinning of numpy dependency Switch to igor2 for .ibw and unpeg NumPy #685
• Added ruff and pydocstyle to the pre-commit configuration and removed flake8 (ruff covers the same issues) by @ns-rse in Adding Ruff and pydocstyle to pre-commit #670
• Moves DPI configuration from default_config to plotting_dictionary
• Fix broken reference to 'image', now 'image_original' by @SylviaWhittle in Fix broken reference to 'image', now 'image_original' #654
• Updates violin plots to work with Seaborn-0.13 and adds legend only to plots with multiple images by @ns-rse in Legend plotted on single image violin plots; update to Seaborn 0.13 #680
• Disable scars by default and fix KDE plotting bug by @SylviaWhittle in Disable scars by default and fix KDE plotting bug #678
• Add a zeroing step to filters by @SylviaWhittle in Add a zeroing step to filters #688
• Fix plotting in pixels for topostats files by @SylviaWhittle in Fix plotting in pixels for topostats files #658
• Adds details for image_stats.csv by @ns-rse in Adds details for image_stats.csv #664
• Changed dict crop_size -1 names to match processing by @MaxGamill-Sheffield in Changed dict crop_size -1 names to match processing #665
• Lower default DPI of individual molecule plots by @SylviaWhittle in Lower default DPI of individual molecule plots #667
• Remove redundant test by @ns-rse in Remove redundant test #689

Full Changelog: v2.1.1...v2.1.2

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This discussion was created from the release v2.1.2.