diff --git a/CHANGES b/CHANGES
index 615f074ae..75b5b1789 100644
--- a/CHANGES
+++ b/CHANGES
@@ -1,3 +1,9 @@
+ * Major changes
+
+ -- the initial model generators have been removed from MAESTRO/
+ and are now a standalone git repo in the amrex-astro github
+ organization
+
18.07
* Major changes
diff --git a/Util/initial_models/GInitModels.mak b/Util/initial_models/GInitModels.mak
deleted file mode 100644
index e9433eedc..000000000
--- a/Util/initial_models/GInitModels.mak
+++ /dev/null
@@ -1,171 +0,0 @@
-# A set of useful macros for putting together one of the initial model
-# generator routines
-
-# include the main Makefile stuff
-include $(FBOXLIB_HOME)/Tools/F_mk/GMakedefs.mak
-
-# default target (make just takes the one that appears first)
-ALL: init_1d.$(suf).exe
-
-
-#-----------------------------------------------------------------------------
-# core FBoxLib directories
-FBOXLIB_CORE := Src/BaseLib
-FPP_DEFINES += -DAMREX_DEVICE=""
-
-
-#-----------------------------------------------------------------------------
-# MAESTRO directories needed
-Fmdirs := Microphysics/EOS
-
-# the helmeos has an include file -- also add a target to link the table
-# into the problem directory.
-ifeq ($(findstring helmeos, $(EOS_DIR)), helmeos)
- EOS_DIR := helmholtz
- EOS_TOP_DIR := $(MICROPHYSICS_HOME)/EOS
- EOS_PATH := $(EOS_TOP_DIR)/helmholtz
- ALL: table
-endif
-
-table:
- @if [ ! -f helm_table.dat ]; then echo ${bold}Linking helm_table.dat${normal}; ln -s $(EOS_PATH)/helm_table.dat .; fi
-
-ifeq ($(findstring multigamma, $(EOS_DIR)), multigamma)
- EOS_TOP_DIR := $(MICROPHYSICS_HOME)/EOS
-endif
-
-MICROPHYS_CORE := $(MAESTRO_TOP_DIR)/Microphysics/EOS $(MAESTRO_TOP_DIR)/Microphysics/screening
-
-# locations of the microphysics
-ifndef EOS_TOP_DIR
- EOS_TOP_DIR := $(MAESTRO_TOP_DIR)/Microphysics/EOS
-endif
-
-ifndef NETWORK_TOP_DIR
- NETWORK_TOP_DIR := $(MAESTRO_TOP_DIR)/Microphysics/networks
-endif
-
-ifndef CONDUCTIVITY_TOP_DIR
- CONDUCTIVITY_TOP_DIR := $(MAESTRO_TOP_DIR)/Microphysics/conductivity
-endif
-
-ifndef CONDUCTIVITY_DIR
- CONDUCTIVITY_DIR = constant
-endif
-
-# add in the network, EOS, and conductivity
-MICROPHYS_CORE += $(EOS_TOP_DIR)/$(EOS_DIR) \
- $(NETWORK_TOP_DIR)/$(NETWORK_DIR) \
- $(NETWORK_TOP_DIR) \
- $(CONDUCTIVITY_TOP_DIR)/$(CONDUCTIVITY_DIR)
-
-# get any additional network dependencies
-include $(NETWORK_TOP_DIR)/$(strip $(NETWORK_DIR))/NETWORK_REQUIRES
-
-ifdef NEED_VODE
- Fmdirs += Util/VODE Util/LINPACK Util/BLAS
-endif
-
-ifdef NEED_BLAS
- Fmdirs += Util/BLAS
-endif
-
-ifdef NEED_LINPACK
- UTIL_CORE += Util/LINPACK
-endif
-
-ifdef NEED_VBDF
- UTIL_CORE += Util/VBDF
-endif
-
-Fmdirs += Util/model_parser Util/simple_log
-
-
-# explicitly add in any source defined in the build directory
-f90sources += $(MODEL_SOURCES)
-
-
-#-----------------------------------------------------------------------------
-# core FBoxLib directories
-Fmpack := $(foreach dir, $(FBOXLIB_CORE), $(FBOXLIB_HOME)/$(dir)/GPackage.mak)
-Fmlocs := $(foreach dir, $(FBOXLIB_CORE), $(FBOXLIB_HOME)/$(dir))
-Fmincs :=
-
-# auxillary directories
-Fmpack += $(foreach dir, $(Fmdirs), $(MAESTRO_TOP_DIR)/$(dir)/GPackage.mak)
-Fmpack += $(foreach dir, $(MICROPHYS_CORE), $(dir)/GPackage.mak)
-
-Fmlocs += $(foreach dir, $(Fmdirs), $(MAESTRO_TOP_DIR)/$(dir))
-Fmlocs += $(foreach dir, $(MICROPHYS_CORE), $(dir))
-
-Fmincs += $(foreach dir, $(Fmincludes), $(MAESTRO_TOP_DIR)/$(dir))
-
-
-# include the necessary GPackage.mak files that define this setup
-include $(Fmpack)
-
-
-
-# we need a probin.f90, since the various microphysics routines can
-# have runtime parameters
-f90sources += probin.f90
-
-PROBIN_TEMPLATE := $(MAESTRO_TOP_DIR)/Util/parameters/dummy.probin.template
-PROBIN_PARAMETER_DIRS = $(MAESTRO_TOP_DIR)/Util/initial_models/
-EXTERN_PARAMETER_DIRS += $(MICROPHYS_CORE) $(NETWORK_TOP_DIR)
-
-
-PROBIN_PARAMETERS := $(shell $(FBOXLIB_HOME)/Tools/F_scripts/findparams.py $(PROBIN_PARAMETER_DIRS))
-EXTERN_PARAMETERS := $(shell $(FBOXLIB_HOME)/Tools/F_scripts/findparams.py $(EXTERN_PARAMETER_DIRS))
-
-probin.f90: $(PROBIN_PARAMETERS) $(EXTERN_PARAMETERS) $(PROBIN_TEMPLATE)
- @echo " "
- @echo "${bold}WRITING probin.f90${normal}"
- $(FBOXLIB_HOME)/Tools/F_scripts/write_probin.py \
- -t $(PROBIN_TEMPLATE) -o probin.f90 -n probin \
- --pa "$(PROBIN_PARAMETERS)" --pb "$(EXTERN_PARAMETERS)"
- @echo " "
-
-
-
-
-
-# vpath defines the directories to search for the source files
-
-# VPATH_LOCATIONS to first search in the problem directory
-# Note: GMakerules.mak will include '.' at the start of the
-VPATH_LOCATIONS += $(Fmlocs)
-
-
-# we need the MAESTRO constants
-f90sources += constants_cgs.f90
-VPATH_LOCATIONS += $(MAESTRO_TOP_DIR)/Source
-
-
-# list of directories to put in the Fortran include path
-FINCLUDE_LOCATIONS += $(Fmincs)
-
-
-init_1d.$(suf).exe: $(objects)
- $(LINK.f90) -o init_1d.$(suf).exe $(objects) $(libraries)
- @echo SUCCESS
-
-
-# include the fParallel Makefile rules
-include $(FBOXLIB_HOME)/Tools/F_mk/GMakerules.mak
-
-
-#-----------------------------------------------------------------------------
-# for debugging. To see the value of a Makefile variable,
-# e.g. Fmlocs, simply do "make print-Fmlocs". This will
-# print out the value.
-print-%: ; @echo $* is $($*)
-
-
-#-----------------------------------------------------------------------------
-# cleaning. Add more actions to 'clean' and 'realclean' to remove
-# probin.f90 and build_info.f90 -- this is where the '::' in make comes
-# in handy
-clean::
- $(RM) probin.f90
- $(RM) build_info.f90
diff --git a/Util/initial_models/README b/Util/initial_models/README
deleted file mode 100644
index 4bcd05051..000000000
--- a/Util/initial_models/README
+++ /dev/null
@@ -1,41 +0,0 @@
--- spherical
-
- generate an isentropic, self-gravitating WD model given a core
- temperature and density.
-
-
--- test2
-
- generate an isentropic plane-parallel atmosphere with an entropy
- jump below to surpress convective overshoot. This is used by
- the test2 and test_convect problems.
-
-
--- toy_atm
-
- similar to he_burn. An isentropic layer is placed on top of an
- isothermal base. A jump in temperature at the base of the
- isentropic layer is specified, with a linear transition between the
- base and isentropic layer. The isentropic layer is continued down
- until reaching a cutoff temperature, at which point the model is
- isothermal.
-
-
--- lagrangian_planar
-
- This takes an existing initial model that is unequally gridded
- (in space) and maps it onto a uniform grid and puts it in HSE
- using our equation of state. At the moment, it assumes a
- constant gravitational acceleration and plane-parallel. The
- integration is down (up and down) from the location of the
- peak T in the model, and the temperature profile of the initial
- model is preserved.
-
-
--- kepler_hybrid
-
- These were used for our original set of wdconvect calculations.
- They take a 1-d model from the Kepler stellar evolution code (which
- may not be uniformly spaced), and put it into HSE on the MAESTRO
- grid. This particular version forces the inner region of the star
- to be completely isentropic.
diff --git a/Util/initial_models/_parameters b/Util/initial_models/_parameters
deleted file mode 100644
index e69de29bb..000000000
diff --git a/Util/initial_models/kepler_hybrid/GNUmakefile b/Util/initial_models/kepler_hybrid/GNUmakefile
deleted file mode 100644
index a69112a7e..000000000
--- a/Util/initial_models/kepler_hybrid/GNUmakefile
+++ /dev/null
@@ -1,30 +0,0 @@
-# Makefile for the init_1d initial model generator
-
-NDEBUG :=
-MPI :=
-OMP :=
-
-COMP := gfortran
-
-MKVERBOSE := t
-
-
-# location of top-level MAESTRO directory
-MAESTRO_TOP_DIR = ../../..
-
-
-# EOS and network
-EOS_DIR := helmeos
-
-NETWORK_DIR := general_null
-GENERAL_NET_INPUTS := $(MAESTRO_TOP_DIR)/Microphysics/networks/$(NETWORK_DIR)/ignition_wdconvect.net
-
-
-# the local sources needed to build the initial model generator
-# MODEL_SOURCES := init_1d.f90
-MODEL_SOURCES := init_1d_irreg.f90
-
-
-include ../GInitModels.mak
-
-
diff --git a/Util/initial_models/kepler_hybrid/init_1d.f90 b/Util/initial_models/kepler_hybrid/init_1d.f90
deleted file mode 100644
index 70cace525..000000000
--- a/Util/initial_models/kepler_hybrid/init_1d.f90
+++ /dev/null
@@ -1,1340 +0,0 @@
-!! Take an initial model from a Lagrangian code and put it onto
-!! a uniform grid and make sure that it is happy with the EOS in
-!! our code. The output is a .hse file that can be read directly
-!! by Maestro.
-!!
-!! The model is placed into HSE by the following differencing:
-!!
-!! (1/dr) [ _i -
_{i-1} ] = (1/2) [ _i + _{i-1} ] g
-!!
-!!
-!! We take the temperature structure directly from the original
-!! initial model. We adjust the density and pressure according to
-!! HSE using the EOS.
-!!
-!!***
-
-program init_1d
-
- use bl_types
- use bl_constants_module
- use bl_error_module
- use eos_module, only: eos, eos_init
- use eos_type_module, only : eos_t, eos_input_rt
- use network
- use fundamental_constants_module
- use extern_probin_module, only: use_eos_coulomb
-
- implicit none
-
- integer :: i, j, n
-
- real (kind=dp_t), allocatable :: xzn_hse(:), xznl(:), xznr(:)
- real (kind=dp_t), allocatable :: M_enclosed(:)
- real (kind=dp_t), allocatable :: model_kepler_hse(:,:)
- real (kind=dp_t), allocatable :: model_isentropic_hse(:,:)
- real (kind=dp_t), allocatable :: model_hybrid_hse(:,:)
- real (kind=dp_t), allocatable :: entropy_want(:)
-
- integer, parameter :: nx = 1280
-
- ! define convenient indices for the scalars
- integer, parameter :: nvar = 5 + nspec
- integer, parameter :: idens = 1, &
- itemp = 2, &
- ipres = 3, &
- ientr = 4, &
- isndspd = 5, &
- ispec = 6
-
- real (kind=dp_t), save :: xmin, xmax, delx
-
- real (kind=dp_t) :: dens_zone, temp_zone, pres_zone, entropy
-
- real (kind=dp_t) :: A, B, dAdT, dAdrho, dBdT, dBdrho
- real (kind=dp_t) :: dpd, dpt, dsd, dst
-
- real (kind=dp_t) :: central_density
-
- real (kind=dp_t) :: p_want, drho, dtemp
-
- real (kind=dp_t) :: g_zone
-
- real (kind=dp_t) :: max_hse_error, dpdr, rhog
-
- real (kind=dp_t), parameter :: TOL = 1.e-10
-
- integer, parameter :: MAX_ITER = 250
-
- integer :: iter, iter_dens
-
- integer :: igood
- real (kind=dp_t) :: slope
-
- logical :: converged_hse, converged_central_density, fluff, isentropic
-
- real (kind=dp_t) :: max_temp
-
- integer :: index_hse_fluff
-
- real (kind=dp_t), dimension(nspec) :: xn
-
- real (kind=dp_t), save :: low_density_cutoff, temp_fluff, temp_fluff_cutoff, smallx
-
- integer, parameter :: MAX_VARNAME_LENGTH=80
- integer :: npts_model, nvars_model_file
-
- real(kind=dp_t), allocatable :: base_state(:,:), base_r(:)
- real(kind=dp_t), allocatable :: vars_stored(:)
- character(len=MAX_VARNAME_LENGTH), allocatable :: varnames_stored(:)
- logical :: found
-
- integer :: ipos
- character (len=256) :: header_line, model_file, outfile
- character (len=8) num
-
- real(kind=dp_t) :: interpolate
- real(kind=dp_t) :: sum
-
- integer :: ibegin
- integer :: i_isentropic
-
- real(kind=dp_t), parameter :: M_solar = 1.98892d33
- real(kind=dp_t) :: anelastic_cutoff = 3.e6 ! this is for diagnostics only -- not used in the HSEing
- real(kind=dp_t) :: M_enclosed_anel
- real(kind=dp_t) :: grav_ener, M_center
- real(kind=dp_t) :: eint_hybrid
-
- type (eos_t) :: eos_state
-
- smallx = 1.d-10
-
- ! set the parameters
- model_file = "kepler_new_6.25e8.raw"
-
- xmin = 0_dp_t
- xmax = 5.d8
-
- low_density_cutoff =1.d-4
-
- ! temp_fluff_cutoff is the density below which we hold the temperature
- ! constant for the kepler model
-
- ! MAESTRO
- ! temp_fluff_cutoff = 1.d-4
-
- ! CASTRO
- temp_fluff_cutoff = 1.d3
-
- temp_fluff = 5.d6
-
- ! this comes in via extern_probin_module -- override the default
- ! here if we want
- use_eos_coulomb = .true.
-
-
- ! initialize the EOS and network
- call eos_init()
- call network_init()
-
- !===========================================================================
- ! Create a 1-d uniform grid that is identical to the mesh that we are
- ! mapping onto, and then we want to force it into HSE on that mesh.
- !===========================================================================
-
- ! allocate storage
- allocate(xzn_hse(nx))
- allocate(xznl(nx))
- allocate(xznr(nx))
- allocate(model_kepler_hse(nx,nvar))
- allocate(model_isentropic_hse(nx,nvar))
- allocate(model_hybrid_hse(nx,nvar))
- allocate(M_enclosed(nx))
- allocate(entropy_want(nx))
-
- ! compute the coordinates of the new gridded function
- delx = (xmax - xmin) / dble(nx)
-
- do i = 1, nx
- xznl(i) = xmin + (dble(i) - 1.0_dp_t)*delx
- xznr(i) = xmin + (dble(i))*delx
- xzn_hse(i) = 0.5_dp_t*(xznl(i) + xznr(i))
- enddo
-
-
- !===========================================================================
- ! read in the Kepler model
- !===========================================================================
-
- ! Open the model file and read in the header
- !
- ! the model file is assumed to be of the follow form:
- ! # npts = 178
- ! # num of variables = 6
- ! # density
- ! # temperature
- ! # pressure
- ! # carbon-12
- ! # oxygen-16
- ! # magnesium-24
- ! 195312.5000 5437711139. 8805500.952 .4695704813E+28 0.3 0.7 0
- ! 585937.5000 5410152416. 8816689.836 0.4663923963E+28 0.3 0.7 0
- !
- ! we read in the number of variables and their order and use this to map
- ! them into the base_state array. We ignore anything other than density,
- ! temperature, pressure and composition.
- !
- ! Presently, we take density, temperature, and composition as the
- ! independent variables and use them to define the thermodynamic state.
- !
- ! composition is assumed to be in terms of mass fractions
-
-
- open(99,file=model_file)
-
- ! the first line has the number of points in the model
- read (99, '(a256)') header_line
- ipos = index(header_line, '=') + 1
- read (header_line(ipos:),*) npts_model
-
- print *, npts_model, ' points found in the initial model file'
-
- ! now read in the number of variables
- read (99, '(a256)') header_line
- ipos = index(header_line, '=') + 1
- read (header_line(ipos:),*) nvars_model_file
-
- print *, nvars_model_file, ' variables found in the initial model file'
-
- allocate (vars_stored(nvars_model_file))
- allocate (varnames_stored(nvars_model_file))
-
- ! now read in the names of the variables
- do i = 1, nvars_model_file
- read (99, '(a256)') header_line
- ipos = index(header_line, '#') + 1
- varnames_stored(i) = trim(adjustl(header_line(ipos:)))
- enddo
-
- ! allocate storage for the model data
- allocate (base_state(npts_model, nvar))
- allocate (base_r(npts_model))
-
- do i = 1, npts_model
- read(99,*) base_r(i), (vars_stored(j), j = 1, nvars_model_file)
-
- base_state(i,:) = ZERO
-
- do j = 1, nvars_model_file
-
- found = .false.
-
- select case (trim(varnames_stored(j)))
-
- case ("density")
- base_state(i,idens) = vars_stored(j)
- found = .true.
-
- case ("temperature")
- base_state(i,itemp) = vars_stored(j)
- found = .true.
-
- case ("pressure")
- base_state(i,ipres) = vars_stored(j)
- found = .true.
-
- case default
-
- ! check if they are species
- n = network_species_index(trim(varnames_stored(j)))
- if (n > 0) then
- base_state(i,ispec-1+n) = vars_stored(j)
- found = .true.
- endif
-
- end select
-
- if (.NOT. found) then
- print *, 'ERROR: variable not found: ', varnames_stored(j)
- endif
-
- enddo
-
- enddo
-
-
- open (unit=50, file="model.orig", status="unknown")
-
- write (50,*) "# initial model as read in"
-
- do i = 1, npts_model
- write (50,1000) base_r(i), (base_state(i,j), j = 1, nvar)
- enddo
-
- close (50)
-
-
-
- !===========================================================================
- ! put the model onto our new uniform grid
- !===========================================================================
-
- igood = -1
-
- do i = 1, nx
-
- do n = 1, nvar
-
- if (xzn_hse(i) < base_r(npts_model)) then
-
- model_kepler_hse(i,n) = interpolate(xzn_hse(i), npts_model, &
- base_r, base_state(:,n))
-
- igood = i
- else
-
- !if (n == itemp) then
-
- ! linearly interpolate the last good Kepler zones
- ! slope = (model_kepler_hse(igood,itemp) - model_kepler_hse(igood-1,itemp))/ &
- ! (xzn_hse(igood) - xzn_hse(igood-1))
- !
- ! model_kepler_hse(i,n) = max(temp_fluff, &
- ! model_kepler_hse(igood,itemp) + slope*(xzn_hse(i) - xzn_hse(igood)))
-
- !else
- ! use a zero-gradient at the top of the initial model if our domain is
- ! larger than the model's domain.
-
- model_kepler_hse(i,n) = base_state(npts_model,n)
- !endif
- endif
-
- enddo
-
-
- ! make sure that the species (mass fractions) sum to 1
- sum = 0.0_dp_t
- do n = ispec,ispec-1+nspec
- model_kepler_hse(i,n) = max(model_kepler_hse(i,n),smallx)
- sum = sum + model_kepler_hse(i,n)
- enddo
-
- do n = ispec,ispec-1+nspec
- model_kepler_hse(i,n) = model_kepler_hse(i,n)/sum
- enddo
-
- enddo
-
-
-
- open (unit=30, file="model.uniform", status="unknown")
-
-1000 format (1x, 12(g26.16, 1x))
-
- write (30,*) "# initial model just after putting onto a uniform grid"
-
- do i = 1, nx
-
- write (30,1000) xzn_hse(i), model_kepler_hse(i,idens), model_kepler_hse(i,itemp), &
- model_kepler_hse(i,ipres), (model_kepler_hse(i,ispec-1+n), n=1,nspec)
-
- enddo
-
- close (unit=30)
-
- !===========================================================================
- ! iterate to find the central density
- !===========================================================================
-
- ! because the Kepler model likely begins at a larger radius than our first
- ! HSE model zone, simple interpolation will not do a good job. We want to
- ! integrate in from the zone that best matches the first Kepler model zone,
- ! assuming HSE and constant entropy.
-
-
- ! find the zone in the uniformly gridded model that corresponds to the
- ! first zone of the original model
- ibegin = -1
- do i = 1, nx
- if (xzn_hse(i) >= base_r(1)) then
- ibegin = i
- exit
- endif
- enddo
-
- print *, 'ibegin = ', ibegin
-
-
- ! store the central density. We will iterate until the central density
- ! converges
- central_density = model_kepler_hse(1,idens)
- print *, 'interpolated central density = ', central_density
-
- do iter_dens = 1, max_iter
-
- ! compute the enclosed mass
- M_enclosed(1) = FOUR3RD*M_PI*delx**3*model_kepler_hse(1,idens)
-
- do i = 2, ibegin
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_kepler_hse(i,idens)
- enddo
-
-
- ! now start at ibegin and integrate inward
- eos_state%T = model_kepler_hse(ibegin,itemp)
- eos_state%rho = model_kepler_hse(ibegin,idens)
- eos_state%xn(:) = model_kepler_hse(ibegin,ispec:nvar)
-
- call eos(eos_input_rt, eos_state)
-
- model_kepler_hse(ibegin,ipres) = eos_state%p
- model_kepler_hse(ibegin,ientr) = eos_state%s
- model_kepler_hse(ibegin,isndspd) = &
- sqrt(eos_state%gam1*eos_state%p/eos_state%rho)
-
- entropy_want(:) = eos_state%s
-
-
- do i = ibegin-1, 1, -1
-
-
- ! as the initial guess for the temperature and density, use
- ! the previous zone
- dens_zone = model_kepler_hse(i+1,idens)
- temp_zone = model_kepler_hse(i+1,itemp)
- xn(:) = model_kepler_hse(i,ispec:nvar)
-
- ! compute the gravitational acceleration on the interface between zones
- ! i and i+1
- g_zone = -Gconst*M_enclosed(i)/(xznr(i)*xznr(i))
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
- do iter = 1, MAX_ITER
-
- p_want = model_kepler_hse(i+1,ipres) - &
- delx*0.5_dp_t*(dens_zone + model_kepler_hse(i+1,idens))*g_zone
-
-
- ! now we have two functions to zero:
- ! A = p_want - p(rho,T)
- ! B = entropy_want - s(rho,T)
- ! We use a two dimensional Taylor expansion and find the deltas
- ! for both density and temperature
-
- ! (t, rho) -> (p, s)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpt = eos_state%dpdt
- dpd = eos_state%dpdr
- dst = eos_state%dsdt
- dsd = eos_state%dsdr
-
- A = p_want - pres_zone
- B = entropy_want(i) - entropy
-
- dAdT = -dpt
- dAdrho = -0.5d0*delx*g_zone - dpd
- dBdT = -dst
- dBdrho = -dsd
-
- dtemp = (B - (dBdrho/dAdrho)*A)/ &
- ((dBdrho/dAdrho)*dAdT - dBdT)
-
- drho = -(A + dAdT*dtemp)/dAdrho
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- temp_zone = max(0.9_dp_t*temp_zone, &
- min(temp_zone + dtemp, 1.1_dp_t*temp_zone))
-
-
- ! if (A < TOL .and. B < ETOL) then
- if (abs(drho) < TOL*dens_zone .and. abs(dtemp) < TOL*temp_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate up'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho
- call bl_error('Error: HSE non-convergence')
-
- endif
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p, s)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- ! update the thermodynamics in this zone
- model_kepler_hse(i,idens) = dens_zone
- model_kepler_hse(i,itemp) = temp_zone
- model_kepler_hse(i,ipres) = pres_zone
- model_kepler_hse(i,ientr) = eos_state%s
- model_kepler_hse(i,isndspd) = &
- sqrt(eos_state%gam1*eos_state%p/eos_state%rho)
-
- enddo
-
- if (abs(model_kepler_hse(1,idens) - central_density) < TOL*central_density) then
- converged_central_density = .true.
- exit
- endif
-
- central_density = model_kepler_hse(1,idens)
-
- enddo
-
- if (.NOT. converged_central_density) then
- print *, 'ERROR: central density iterations did not converge'
- call bl_error('ERROR: non-convergence')
- endif
-
-
- print *, 'converged central density = ', model_kepler_hse(1,idens)
- print *, ' '
-
- !===========================================================================
- ! compute the full HSE model using our new central density and temperature,
- ! and the temperature structure as dictated by the Kepler model.
- !===========================================================================
-
- print *, 'putting Kepler model into HSE on our grid...'
-
- ! compute the enclosed mass
- M_enclosed(1) = FOUR3RD*M_PI*delx**3*model_kepler_hse(1,idens)
-
- fluff = .FALSE.
-
- do i = 2, nx
-
- ! use previous zone as initial guess for T, rho
- dens_zone = model_kepler_hse(i-1,idens)
- temp_zone = model_kepler_hse(i-1,itemp)
-
- xn(:) = model_kepler_hse(i,ispec:nvar)
-
- ! compute the gravitational acceleration on the interface between zones
- ! i-1 and i
- g_zone = -Gconst*M_enclosed(i-1)/(xznr(i-1)*xznr(i-1))
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- converged_hse = .FALSE.
-
- if (.not. fluff) then
-
- do iter = 1, MAX_ITER
-
-
- ! HSE differencing
- p_want = model_kepler_hse(i-1,ipres) + &
- delx*0.5_dp_t*(dens_zone + model_kepler_hse(i-1,idens))*g_zone
-
- temp_zone = model_kepler_hse(i,itemp)
-
- if (model_kepler_hse(i-1,idens) .lt. temp_fluff_cutoff) then
- temp_zone = temp_fluff
- end if
-
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
- drho = (p_want - pres_zone)/(dpd - 0.5_dp_t*delx*g_zone)
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- if (dens_zone < low_density_cutoff) then
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- index_hse_fluff = i
- exit
-
- endif
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate up'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho
- call bl_error('Error: HSE non-convergence')
-
- endif
-
- if (temp_zone < temp_fluff) then
- temp_zone = temp_fluff
- endif
-
- else
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- endif
-
-
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
-
- ! update the thermodynamics in this zone
- model_kepler_hse(i,idens) = dens_zone
- model_kepler_hse(i,itemp) = temp_zone
- model_kepler_hse(i,ipres) = pres_zone
- model_kepler_hse(i,ientr) = eos_state%s
- model_kepler_hse(i,isndspd) = &
- sqrt(eos_state%gam1*eos_state%p/eos_state%rho)
-
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_kepler_hse(i,idens)
-
- enddo
-
-
- !===========================================================================
- ! compute the alternate model using the same central density and
- ! temperature, but assuming that we are isentropic (and in HSE).
- !===========================================================================
-
- print *, 'creating isentropic model...'
-
- ! as an initial guess, use the Kepler HSE model
- model_isentropic_hse(:,:) = model_kepler_hse(:,:)
-
- entropy_want(:) = model_isentropic_hse(1,ientr)
-
- fluff = .false.
- isentropic = .true.
-
- ! keep track of the mass enclosed below the current zone
- M_enclosed(1) = FOUR3RD*M_PI*delx**3*model_isentropic_hse(1,idens)
-
- do i = 2, nx
-
- ! use previous zone as initial guess for T, rho
- dens_zone = model_isentropic_hse(i-1,idens)
- temp_zone = model_isentropic_hse(i-1,itemp)
-
- xn(:) = model_isentropic_hse(i,ispec:nvar)
-
- g_zone = -Gconst*M_enclosed(i-1)/(xznr(i-1)*xznr(i-1))
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
- if (.not. fluff) then
-
- do iter = 1, MAX_ITER
-
- if (isentropic) then
-
- p_want = model_isentropic_hse(i-1,ipres) + &
- delx*0.5_dp_t*(dens_zone + model_isentropic_hse(i-1,idens))*g_zone
-
-
- ! now we have two functions to zero:
- ! A = p_want - p(rho,T)
- ! B = entropy_want - s(rho,T)
- ! We use a two dimensional Taylor expansion and find the deltas
- ! for both density and temperature
-
- ! (t, rho) -> (p, s)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpt = eos_state%dpdt
- dpd = eos_state%dpdr
- dst = eos_state%dsdt
- dsd = eos_state%dsdr
-
- A = p_want - pres_zone
- B = entropy_want(i) - entropy
-
- dAdT = -dpt
- dAdrho = 0.5d0*delx*g_zone - dpd
- dBdT = -dst
- dBdrho = -dsd
-
- dtemp = (B - (dBdrho/dAdrho)*A)/ &
- ((dBdrho/dAdrho)*dAdT - dBdT)
-
- drho = -(A + dAdT*dtemp)/dAdrho
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- temp_zone = max(0.9_dp_t*temp_zone, &
- min(temp_zone + dtemp, 1.1_dp_t*temp_zone))
-
-
- if (dens_zone < low_density_cutoff) then
-
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
- ! if (A < TOL .and. B < ETOL) then
- if (abs(drho) < TOL*dens_zone .and. abs(dtemp) < TOL*temp_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- else
-
- ! do isothermal
- p_want = model_isentropic_hse(i-1,ipres) + &
- delx*0.5*(dens_zone + model_isentropic_hse(i-1,idens))*g_zone
-
- temp_zone = temp_fluff
-
- ! (t, rho) -> (p, s)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- drho = (p_want - pres_zone)/(dpd - 0.5*delx*g_zone)
-
- dens_zone = max(0.9*dens_zone, &
- min(dens_zone + drho, 1.1*dens_zone))
-
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- if (dens_zone < low_density_cutoff) then
-
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
- endif
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate up'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho
- call bl_error('Error: HSE non-convergence')
-
- endif
-
- if (temp_zone < temp_fluff) then
- temp_zone = temp_fluff
- isentropic = .false.
- endif
-
- else
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- endif
-
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p, s)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- ! update the thermodynamics in this zone
- model_isentropic_hse(i,idens) = dens_zone
- model_isentropic_hse(i,itemp) = temp_zone
- model_isentropic_hse(i,ipres) = pres_zone
- model_isentropic_hse(i,ientr) = eos_state%s
- model_isentropic_hse(i,isndspd) = &
- sqrt(eos_state%gam1*eos_state%p/eos_state%rho)
-
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i))* &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_isentropic_hse(i,idens)
-
- enddo
-
-
- !===========================================================================
- ! compute a hybrid model -- isentropic in the interior, Kepler's temperature
- ! structure outside.
- !===========================================================================
-
- print *, 'creating hybrid model...'
- print *, ' '
- eint_hybrid = 0.0
-
-
- max_temp = maxval(model_kepler_hse(:,itemp))
- i_isentropic = -1
- do i = 1, nx
- model_hybrid_hse(i,:) = model_isentropic_hse(i,:)
-
- if (model_kepler_hse(i,itemp) > model_isentropic_hse(i,itemp)) then
-
- ! there will be a few regions in the very, very center where
- ! the kepler temperature may be slightly higher than the
- ! isentropic, but we are still not done with isentropic.
- ! i_isentropic is an index that keeps track of when we switch
- ! to the original kepler model "for real". This is used for
- ! diagnostics. We require the temperature to have dropped by
- ! 10% from the central value at least...
- if (i_isentropic == -1 .and. &
- model_isentropic_hse(i,itemp) < 0.9*max_temp) i_isentropic = i
-
- model_hybrid_hse(i,itemp) = model_kepler_hse(i,itemp)
- endif
-
- enddo
-
- ! the outer part of the star will be using the original kepler
- ! temperature structure. Because the hybrid model might hit the
- ! fluff region earlier or later than the kepler model, reset the
- ! temperatures in the fluff region to the last valid kepler zone.
- model_hybrid_hse(index_hse_fluff:,itemp) = model_kepler_hse(index_hse_fluff-1,itemp)
-
-
- ! compute the enclosed mass
- M_enclosed(1) = FOUR3RD*M_PI*delx**3*model_hybrid_hse(1,idens)
-
- fluff = .FALSE.
-
- do i = 2, nx
-
- ! use previous zone as initial guess for T, rho
- dens_zone = model_hybrid_hse(i-1,idens)
- temp_zone = model_hybrid_hse(i-1,itemp)
-
- xn(:) = model_hybrid_hse(i,ispec:nvar)
-
- ! compute the gravitational acceleration on the interface between zones
- ! i-1 and i
- g_zone = -Gconst*M_enclosed(i-1)/(xznr(i-1)*xznr(i-1))
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- converged_hse = .FALSE.
-
- if (.not. fluff) then
-
- do iter = 1, MAX_ITER
-
-
- ! HSE differencing
- p_want = model_hybrid_hse(i-1,ipres) + &
- delx*0.5_dp_t*(dens_zone + model_hybrid_hse(i-1,idens))*g_zone
-
- temp_zone = model_hybrid_hse(i,itemp)
-
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
- drho = (p_want - pres_zone)/(dpd - 0.5_dp_t*delx*g_zone)
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- if (dens_zone <= low_density_cutoff) then
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate up'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho
- call bl_error('Error: HSE non-convergence')
-
- endif
-
- if (temp_zone < temp_fluff) then
- temp_zone = temp_fluff
- endif
-
- else
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- endif
-
-
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
-
- ! update the thermodynamics in this zone
- model_hybrid_hse(i,idens) = dens_zone
- model_hybrid_hse(i,itemp) = temp_zone
- model_hybrid_hse(i,ipres) = pres_zone
- model_hybrid_hse(i,ientr) = eos_state%s
- model_hybrid_hse(i,isndspd) = &
- sqrt(eos_state%gam1*eos_state%p/eos_state%rho)
-
- eint_hybrid = eint_hybrid + &
- dens_zone*eos_state%e*FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)
-
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_hybrid_hse(i,idens)
-
- enddo
-
-
-
-
-
-
- !===========================================================================
- ! output
- !===========================================================================
-
- !---------------------------------------------------------------------------
- ! kepler model
- !---------------------------------------------------------------------------
-
- ipos = index(model_file, '.raw')
- outfile = model_file(1:ipos-1) // '.hse'
-
- write(num,'(i8)') nx
-
- outfile = trim(outfile) // '.' // trim(adjustl(num))
-
- print *, 'writing HSE Kepler model to ', trim(outfile)
-
- open (unit=50, file=outfile, status="unknown")
-
- write (50,1001) "# npts = ", nx
- write (50,1001) "# num of variables = ", 3 + nspec
- write (50,1002) "# density"
- write (50,1002) "# temperature"
- write (50,1002) "# pressure"
-
- do n = 1, nspec
- write (50,1003) "# ", spec_names(n)
- enddo
-
-1001 format(a, i5)
-1002 format(a)
-1003 format(a,a)
-
- do i = 1, nx
-
- write (50,1000) xzn_hse(i), model_kepler_hse(i,idens), model_kepler_hse(i,itemp), model_kepler_hse(i,ipres), &
- (model_kepler_hse(i,ispec-1+n), n=1,nspec)
-
- enddo
-
- close (unit=50)
-
-
- ! compute the enclosed mass
- M_enclosed(1) = FOUR3RD*M_PI*delx**3*model_kepler_hse(1,idens)
-
- do i = 2, nx
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_kepler_hse(i,idens)
- enddo
-
- print *, 'total mass = ', real(M_enclosed(nx)), ' g = ', real(M_enclosed(nx)/M_solar), ' solar masses'
-
-
- ! compute the maximum HSE error
- max_hse_error = -1.d30
-
- do i = 2, nx-1
- g_zone = -Gconst*M_enclosed(i-1)/xznr(i-1)**2
- dpdr = (model_kepler_hse(i,ipres) - model_kepler_hse(i-1,ipres))/delx
- rhog = HALF*(model_kepler_hse(i,idens) + model_kepler_hse(i-1,idens))*g_zone
-
- if (dpdr /= ZERO .and. model_kepler_hse(i+1,idens) > low_density_cutoff) then
- max_hse_error = max(max_hse_error, abs(dpdr - rhog)/abs(dpdr))
- endif
- enddo
-
- print *, 'maximum HSE error = ', max_hse_error
- print *, ' '
-
- !---------------------------------------------------------------------------
- ! isentropic model
- !---------------------------------------------------------------------------
-
- ipos = index(model_file, '.raw')
- outfile = model_file(1:ipos-1) // '.isentropic.hse'
-
- write(num,'(i8)') nx
-
- outfile = trim(outfile) // '.' // trim(adjustl(num))
-
- print *, 'writing HSE isentropic model to ', trim(outfile)
-
- open (unit=50, file=outfile, status="unknown")
-
- write (50,1001) "# npts = ", nx
- write (50,1001) "# num of variables = ", 3 + nspec
- write (50,1002) "# density"
- write (50,1002) "# temperature"
- write (50,1002) "# pressure"
-
- do n = 1, nspec
- write (50,1003) "# ", spec_names(n)
- enddo
-
- do i = 1, nx
-
- write (50,1000) xzn_hse(i), model_isentropic_hse(i,idens), model_isentropic_hse(i,itemp), model_isentropic_hse(i,ipres), &
- (model_isentropic_hse(i,ispec-1+n), n=1,nspec)
-
- enddo
-
- close (unit=50)
-
-
- ! compute the enclosed mass
- M_enclosed(1) = FOUR3RD*M_PI*delx**3*model_isentropic_hse(1,idens)
-
- do i = 2, nx
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_isentropic_hse(i,idens)
- enddo
-
- print *, 'total mass = ', real(M_enclosed(nx)), ' g = ', real(M_enclosed(nx)/M_solar), ' solar masses'
-
-
- ! compute the maximum HSE error
- max_hse_error = -1.d30
-
- do i = 2, nx-1
- g_zone = -Gconst*M_enclosed(i-1)/xznr(i-1)**2
- dpdr = (model_isentropic_hse(i,ipres) - model_isentropic_hse(i-1,ipres))/delx
- rhog = HALF*(model_isentropic_hse(i,idens) + model_isentropic_hse(i-1,idens))*g_zone
-
- if (dpdr /= ZERO .and. model_isentropic_hse(i+1,idens) > low_density_cutoff) then
- max_hse_error = max(max_hse_error, abs(dpdr - rhog)/abs(dpdr))
- endif
- enddo
-
- print *, 'maximum HSE error = ', max_hse_error
- print *, ' '
-
-
- !---------------------------------------------------------------------------
- ! hybrid model
- !---------------------------------------------------------------------------
-
- ipos = index(model_file, '.raw')
- outfile = model_file(1:ipos-1) // '.hybrid.hse'
-
- write(num,'(i8)') nx
-
- outfile = trim(outfile) // '.' // trim(adjustl(num))
-
- print *, 'writing HSE hybrid model to ', trim(outfile)
-
- open (unit=50, file=outfile, status="unknown")
-
- write (50,1001) "# npts = ", nx
- write (50,1001) "# num of variables = ", 3 + nspec
- write (50,1002) "# density"
- write (50,1002) "# temperature"
- write (50,1002) "# pressure"
-
- do n = 1, nspec
- write (50,1003) "# ", spec_names(n)
- enddo
-
- do i = 1, nx
-
- write (50,1000) xzn_hse(i), model_hybrid_hse(i,idens), model_hybrid_hse(i,itemp), model_hybrid_hse(i,ipres), &
- (model_hybrid_hse(i,ispec-1+n), n=1,nspec)
-
- enddo
-
- close (unit=50)
-
-
- ! compute the enclosed mass
- M_enclosed(1) = FOUR3RD*M_PI*delx**3*model_hybrid_hse(1,idens)
-
- do i = 2, nx
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_hybrid_hse(i,idens)
- enddo
-
- print *, 'total mass = ', real(M_enclosed(nx)), ' g = ', real(M_enclosed(nx)/M_solar), ' solar masses'
- print *, 'mass of convective region = ', real(M_enclosed(i_isentropic)), ' g = ', &
- real(M_enclosed(i_isentropic)/M_solar), ' solar masses'
- print *, 'radius of convective region = ', real(xzn_hse(i_isentropic)), ' cm'
-
- ! compute the maximum HSE error
- max_hse_error = -1.d30
-
- do i = 2, nx-1
- g_zone = -Gconst*M_enclosed(i-1)/xznr(i-1)**2
- dpdr = (model_hybrid_hse(i,ipres) - model_hybrid_hse(i-1,ipres))/delx
- rhog = HALF*(model_hybrid_hse(i,idens) + model_hybrid_hse(i-1,idens))*g_zone
-
- if (dpdr /= ZERO .and. model_hybrid_hse(i+1,idens) > low_density_cutoff) then
- max_hse_error = max(max_hse_error, abs(dpdr - rhog)/abs(dpdr))
- endif
- enddo
-
- print *, 'maximum HSE error = ', max_hse_error
-
-
-
- ! output the entropy
-
- outfile = model_file(1:ipos-1) // '.entropy'
- outfile = trim(outfile) // '.' // trim(adjustl(num))
-
- open (unit=60, file=outfile, status="unknown")
-
- do i = 1, nx
- write (60,1000) xzn_hse(i), model_kepler_hse(i,ientr)
- enddo
-
- close (unit=60)
-
-
- ! compute the mass enclosed inside the anelastic_cutoff
- M_enclosed_anel = FOUR3RD*M_PI*delx**3*model_hybrid_hse(1,idens)
- do i = 2, nx
- if (model_hybrid_hse(i,idens) >= anelastic_cutoff) then
- M_enclosed_anel = M_enclosed_anel + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_hybrid_hse(i,idens)
- else
- exit
- endif
- enddo
-
- print *, ' '
- print *, 'mass within anelastic_cutoff (', real(anelastic_cutoff), ') =', &
- real(M_enclosed_anel/M_solar), 'solar masses'
-
-
- ! compute the central sound speed
- print *, 'sound speed at center of star = ', model_hybrid_hse(1,isndspd)
-
-
- ! compute the gravitational potential energy
- M_center = FOUR3RD*M_PI*xzn_hse(1)**3*model_hybrid_hse(1,idens)
-
- ! dU = - G M dM / r; dM = 4 pi r**2 rho dr --> dU = - 4 pi G r rho dr
- grav_ener = -FOUR*M_PI*Gconst*M_center*xzn_hse(1)*model_hybrid_hse(1,idens)*(xznr(1) - xznl(1))
-
-
- do i = 2, nx
- if (model_hybrid_hse(i,idens) >= anelastic_cutoff) then
- M_center = M_center + &
- FOUR3RD*M_PI*(xzn_hse(i) - xznl(i)) * &
- (xzn_hse(i)**2 +xznl(i)*xzn_hse(i) + xznl(i)**2)*model_hybrid_hse(i,idens) + &
- FOUR3RD*M_PI*(xznr(i-1) - xzn_hse(i-1)) * &
- (xznr(i-1)**2 +xzn_hse(i-1)*xznr(i-1) + xzn_hse(i-1)**2)*model_hybrid_hse(i-1,idens)
-
- ! dU = - G M dM / r; dM = 4 pi r**2 rho dr --> dU = - 4 pi G r rho dr
- grav_ener = grav_ener - &
- FOUR*M_PI*Gconst*M_center*xzn_hse(i)*model_hybrid_hse(i,idens)*(xznr(i) - xznl(i))
- else
- exit
- endif
- enddo
-
- print *, "gravitational potential energy = ", grav_ener
- print *, "internal energy = ", eint_hybrid
-
-end program init_1d
-
-
-
-
-
- function interpolate(r, npts, model_r, model_var)
-
- use bl_types
-
- implicit none
-
-
- ! given the array of model coordinates (model_r), and variable (model_var),
- ! find the value of model_var at point r using linear interpolation.
- ! Eventually, we can do something fancier here.
-
- real(kind=dp_t) :: interpolate
- real(kind=dp_t), intent(in) :: r
- integer :: npts
- real(kind=dp_t), dimension(npts) :: model_r, model_var
-
- real(kind=dp_t) :: slope
- real(kind=dp_t) :: minvar, maxvar
-
- integer :: i, id
-
- ! find the location in the coordinate array where we want to interpolate
- do i = 1, npts
- if (model_r(i) >= r) exit
- enddo
-
- id = i
-
- if (id == 1) then
-
- slope = (model_var(id+1) - model_var(id))/(model_r(id+1) - model_r(id))
- interpolate = slope*(r - model_r(id)) + model_var(id)
-
- ! safety check to make sure interpolate lies within the bounding points
- !minvar = min(model_var(id+1),model_var(id))
- !maxvar = max(model_var(id+1),model_var(id))
- !interpolate = max(interpolate,minvar)
- !interpolate = min(interpolate,maxvar)
-
- else
-
- slope = (model_var(id) - model_var(id-1))/(model_r(id) - model_r(id-1))
- interpolate = slope*(r - model_r(id)) + model_var(id)
-
- ! safety check to make sure interpolate lies within the bounding points
- minvar = min(model_var(id),model_var(id-1))
- maxvar = max(model_var(id),model_var(id-1))
- interpolate = max(interpolate,minvar)
- interpolate = min(interpolate,maxvar)
-
- endif
-
- return
-
- end function interpolate
diff --git a/Util/initial_models/kepler_hybrid/init_1d_irreg.f90 b/Util/initial_models/kepler_hybrid/init_1d_irreg.f90
deleted file mode 100644
index 989cb2fed..000000000
--- a/Util/initial_models/kepler_hybrid/init_1d_irreg.f90
+++ /dev/null
@@ -1,1387 +0,0 @@
-!! Take an initial model from a Lagrangian code and put it onto
-!! a uniform grid and make sure that it is happy with the EOS in
-!! our code. The output is a .hse file that can be read directly
-!! by Maestro.
-!!
-!! The model is placed into HSE by the following differencing:
-!!
-!! (1/dr) [ _i -
_{i-1} ] = (1/2) [ _i + _{i-1} ] g
-!!
-!!
-!! We take the temperature structure directly from the original
-!! initial model. We adjust the density and pressure according to
-!! HSE using the EOS.
-!!
-!!***
-
-program init_1d_irreg
-
- use bl_types
- use bl_constants_module
- use bl_error_module
- use eos_module, only: eos, eos_init
- use eos_type_module, only : eos_t, eos_input_rt
- use network
- use fundamental_constants_module
- use extern_probin_module, only: use_eos_coulomb
-
- implicit none
-
- integer :: i, j, n
-
- real (kind=dp_t), allocatable :: xzn_hse(:), xznl(:), xznr(:)
- real (kind=dp_t), allocatable :: M_enclosed(:)
- real (kind=dp_t), allocatable :: model_kepler_hse(:,:)
- real (kind=dp_t), allocatable :: model_isentropic_hse(:,:)
- real (kind=dp_t), allocatable :: model_hybrid_hse(:,:)
- real (kind=dp_t), allocatable :: entropy_want(:)
-
- integer, parameter :: nx = 640
- integer, parameter :: nr = (3*((nx/5)/2-0.5_dp_t)*((nx/5)/2-0.5_dp_t)-0.75_dp_t)/2.0_dp_t;
-
- ! define convenient indices for the scalars
- integer, parameter :: nvar = 5 + nspec
- integer, parameter :: idens = 1, &
- itemp = 2, &
- ipres = 3, &
- ientr = 4, &
- isndspd = 5, &
- ispec = 6
-
- real (kind=dp_t), save :: xmin, xmax, delx, delr
- real (kind=dp_t), allocatable :: delrl(:), delrr(:)
-
- real (kind=dp_t) :: dens_zone, temp_zone, pres_zone, entropy
-
- real (kind=dp_t) :: A, B, dAdT, dAdrho, dBdT, dBdrho
- real (kind=dp_t) :: dpd, dpt, dsd, dst
-
- real (kind=dp_t) :: central_density
-
- real (kind=dp_t) :: p_want, drho, dtemp
-
- real (kind=dp_t) :: g_zone
-
- real (kind=dp_t) :: max_hse_error, dpdr, rhog
-
- real (kind=dp_t), parameter :: TOL = 1.e-10
-
- integer, parameter :: MAX_ITER = 250
-
- integer :: iter, iter_dens
-
- integer :: igood
- real (kind=dp_t) :: slope
-
- logical :: converged_hse, converged_central_density, fluff, isentropic
-
- real (kind=dp_t) :: max_temp
-
- integer :: index_hse_fluff
-
- real (kind=dp_t), dimension(nspec) :: xn
-
- real (kind=dp_t), save :: low_density_cutoff, temp_fluff, temp_fluff_cutoff, smallx
-
- integer, parameter :: MAX_VARNAME_LENGTH=80
- integer :: npts_model, nvars_model_file
-
- real(kind=dp_t), allocatable :: base_state(:,:), base_r(:)
- real(kind=dp_t), allocatable :: vars_stored(:)
- character(len=MAX_VARNAME_LENGTH), allocatable :: varnames_stored(:)
- logical :: found
-
- integer :: ipos
- character (len=256) :: header_line, model_file, outfile
- character (len=8) num
-
- real(kind=dp_t) :: interpolate
- real(kind=dp_t) :: sum
- real(kind=dp_t) :: rfrac
-
- integer :: ibegin
- integer :: i_isentropic
-
- real(kind=dp_t), parameter :: M_solar = 1.98892d33
- real(kind=dp_t) :: anelastic_cutoff = 3.e6 ! this is for diagnostics only -- not used in the HSEing
- real(kind=dp_t) :: M_enclosed_anel
- real(kind=dp_t) :: grav_ener, M_center
- real(kind=dp_t) :: eint_hybrid
-
- type (eos_t) :: eos_state
-
- smallx = 1.d-10
-
- ! set the parameters
- model_file = "kepler_new_6.25e8.raw"
-
- xmin = 0_dp_t
- xmax = 5.d8
-
- low_density_cutoff =1.d-4
-
- ! temp_fluff_cutoff is the density below which we hold the temperature
- ! constant for the kepler model
-
- ! MAESTRO
- temp_fluff_cutoff = 1.d-4
-
- ! CASTRO
- ! temp_fluff_cutoff = 1.d3
-
- temp_fluff = 5.d6
-
- ! this comes in via extern_probin_module -- override the default
- ! here if we want
- use_eos_coulomb = .true.
-
-
- ! initialize the EOS and network
- call eos_init()
- call network_init()
-
- !===========================================================================
- ! Create a 1-d uniform grid that is identical to the mesh that we are
- ! mapping onto, and then we want to force it into HSE on that mesh.
- !===========================================================================
-
- ! allocate storage
- allocate(xzn_hse(nr))
- allocate(xznl(nr))
- allocate(xznr(nr))
- allocate(model_kepler_hse(nr,nvar))
- allocate(model_isentropic_hse(nr,nvar))
- allocate(model_hybrid_hse(nr,nvar))
- allocate(M_enclosed(nr))
- allocate(entropy_want(nr))
- allocate(delrl(nr))
- allocate(delrr(nr))
-
- ! compute the coordinates of the new gridded function
- delx = (xmax - xmin) / dble(nx/5)
-
- do i = 1, nr
- if (i .eq. 1) then
- ! set the first edge node to xmin
- xznl(i) = xmin
- else
- xznl(i) = xmin + sqrt(0.75_dp_t + 2.0_dp_t*(i - 1.5_dp_t))*delx
- end if
-
- xznr(i) = xmin + sqrt(0.75_dp_t + 2.0_dp_t*(i - 0.5_dp_t))*delx
- xzn_hse(i) = xmin + sqrt( 0.75_dp_t + 2.0_dp_t*(i - 1.0_dp_t) )*delx ! cell center
- delrl(i) = xzn_hse(i) - xznl(i)
- delrr(i) = xznr(i) - xzn_hse(i)
- enddo
-
-
-
- !===========================================================================
- ! read in the Kepler model
- !===========================================================================
-
- ! Open the model file and read in the header
- !
- ! the model file is assumed to be of the follow form:
- ! # npts = 178
- ! # num of variables = 6
- ! # density
- ! # temperature
- ! # pressure
- ! # carbon-12
- ! # oxygen-16
- ! # magnesium-24
- ! 195312.5000 5437711139. 8805500.952 .4695704813E+28 0.3 0.7 0
- ! 585937.5000 5410152416. 8816689.836 0.4663923963E+28 0.3 0.7 0
- !
- ! we read in the number of variables and their order and use this to map
- ! them into the base_state array. We ignore anything other than density,
- ! temperature, pressure and composition.
- !
- ! Presently, we take density, temperature, and composition as the
- ! independent variables and use them to define the thermodynamic state.
- !
- ! composition is assumed to be in terms of mass fractions
-
-
- open(99,file=model_file)
-
- ! the first line has the number of points in the model
- read (99, '(a256)') header_line
- ipos = index(header_line, '=') + 1
- read (header_line(ipos:),*) npts_model
-
- print *, npts_model, ' points found in the initial model file'
-
- ! now read in the number of variables
- read (99, '(a256)') header_line
- ipos = index(header_line, '=') + 1
- read (header_line(ipos:),*) nvars_model_file
-
- print *, nvars_model_file, ' variables found in the initial model file'
-
- allocate (vars_stored(nvars_model_file))
- allocate (varnames_stored(nvars_model_file))
-
- ! now read in the names of the variables
- do i = 1, nvars_model_file
- read (99, '(a256)') header_line
- ipos = index(header_line, '#') + 1
- varnames_stored(i) = trim(adjustl(header_line(ipos:)))
- enddo
-
- ! allocate storage for the model data
- allocate (base_state(npts_model, nvar))
- allocate (base_r(npts_model))
-
- do i = 1, npts_model
- read(99,*) base_r(i), (vars_stored(j), j = 1, nvars_model_file)
-
- base_state(i,:) = ZERO
-
- do j = 1, nvars_model_file
-
- found = .false.
-
- select case (trim(varnames_stored(j)))
-
- case ("density")
- base_state(i,idens) = vars_stored(j)
- found = .true.
-
- case ("temperature")
- base_state(i,itemp) = vars_stored(j)
- found = .true.
-
- case ("pressure")
- base_state(i,ipres) = vars_stored(j)
- found = .true.
-
- case default
-
- ! check if they are species
- n = network_species_index(trim(varnames_stored(j)))
- if (n > 0) then
- base_state(i,ispec-1+n) = vars_stored(j)
- found = .true.
- endif
-
- end select
-
- if (.NOT. found) then
- print *, 'ERROR: variable not found: ', varnames_stored(j)
- endif
-
- enddo
-
- enddo
-
-
- open (unit=50, file="model.orig", status="unknown")
-
- write (50,*) "# initial model as read in"
-
- do i = 1, npts_model
- write (50,1000) base_r(i), (base_state(i,j), j = 1, nvar)
- enddo
-
- close (50)
-
-
-
- !===========================================================================
- ! put the model onto our new uniform grid
- !===========================================================================
-
- igood = -1
-
- do i = 1, nr
-
- do n = 1, nvar
-
- if (xzn_hse(i) < base_r(npts_model)) then
-
- model_kepler_hse(i,n) = interpolate(xzn_hse(i), npts_model, &
- base_r, base_state(:,n))
-
- igood = i
- else
-
- !if (n == itemp) then
-
- ! linearly interpolate the last good Kepler zones
- ! slope = (model_kepler_hse(igood,itemp) - model_kepler_hse(igood-1,itemp))/ &
- ! (xzn_hse(igood) - xzn_hse(igood-1))
- !
- ! model_kepler_hse(i,n) = max(temp_fluff, &
- ! model_kepler_hse(igood,itemp) + slope*(xzn_hse(i) - xzn_hse(igood)))
-
- !else
- ! use a zero-gradient at the top of the initial model if our domain is
- ! larger than the model's domain.
-
- model_kepler_hse(i,n) = base_state(npts_model,n)
- !endif
- endif
-
- enddo
-
-
- ! make sure that the species (mass fractions) sum to 1
- sum = 0.0_dp_t
- do n = ispec,ispec-1+nspec
- model_kepler_hse(i,n) = max(model_kepler_hse(i,n),smallx)
- sum = sum + model_kepler_hse(i,n)
- enddo
-
- do n = ispec,ispec-1+nspec
- model_kepler_hse(i,n) = model_kepler_hse(i,n)/sum
- enddo
-
- enddo
-
-
-
- open (unit=30, file="model.nonuniform", status="unknown")
-
-1000 format (1x, 12(g26.16, 1x))
-
- write (30,*) "# initial model just after putting onto a non-uniform grid"
-
- do i = 1, nr
-
- write (30,1000) xzn_hse(i), model_kepler_hse(i,idens), model_kepler_hse(i,itemp), &
- model_kepler_hse(i,ipres), (model_kepler_hse(i,ispec-1+n), n=1,nspec)
-
- enddo
-
- close (unit=30)
-
- !===========================================================================
- ! iterate to find the central density
- !===========================================================================
-
- ! because the Kepler model likely begins at a larger radius than our first
- ! HSE model zone, simple interpolation will not do a good job. We want to
- ! integrate in from the zone that best matches the first Kepler model zone,
- ! assuming HSE and constant entropy.
-
-
- ! find the zone in the nonconstant gridded model that corresponds to the
- ! first zone of the original model
- ibegin = -1
- do i = 1, nr
- if (xzn_hse(i) >= base_r(1)) then
- ibegin = i
- exit
- endif
- enddo
-
- print *, 'ibegin = ', ibegin
-
-
- ! store the central density. We will iterate until the central density
- ! converges
- central_density = model_kepler_hse(1,idens)
- print *, 'interpolated central density = ', central_density
-
- delr = delrl(1) + delrr(1)
-
- do iter_dens = 1, max_iter
-
- ! compute the enclosed mass
- M_enclosed(1) = FOUR3RD*M_PI*delr**3*model_kepler_hse(1,idens)
-
- do i = 2, ibegin
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_kepler_hse(i,idens)
- enddo
-
-
- ! now start at ibegin and integrate inward
- eos_state%T = model_kepler_hse(ibegin,itemp)
- eos_state%rho = model_kepler_hse(ibegin,idens)
- eos_state%xn(:) = model_kepler_hse(ibegin,ispec:nvar)
-
- call eos(eos_input_rt, eos_state)
-
- model_kepler_hse(ibegin,ipres) = eos_state%p
- model_kepler_hse(ibegin,ientr) = eos_state%s
- model_kepler_hse(ibegin,isndspd) = &
- sqrt(eos_state%gam1*eos_state%p/eos_state%rho)
-
- entropy_want(:) = eos_state%s
-
-
- do i = ibegin-1, 1, -1
-
-
- ! as the initial guess for the temperature and density, use
- ! the previous zone
- dens_zone = model_kepler_hse(i+1,idens)
- temp_zone = model_kepler_hse(i+1,itemp)
- xn(:) = model_kepler_hse(i,ispec:nvar)
-
- ! compute the gravitational acceleration on the interface between zones
- ! i and i+1
- g_zone = -Gconst*M_enclosed(i)/(xznr(i)*xznr(i))
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
- delr = delrr(i) + delrl(i+1)
- rfrac = delrl(i+1)/delr
-
- do iter = 1, MAX_ITER
-
- p_want = model_kepler_hse(i+1,ipres) - &
- delr*((ONE-rfrac)*dens_zone + rfrac*model_kepler_hse(i+1,idens))*g_zone
-
-
- ! now we have two functions to zero:
- ! A = p_want - p(rho,T)
- ! B = entropy_want - s(rho,T)
- ! We use a two dimensional Taylor expansion and find the deltas
- ! for both density and temperature
-
- ! (t, rho) -> (p, s)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpt = eos_state%dpdt
- dpd = eos_state%dpdr
- dst = eos_state%dsdt
- dsd = eos_state%dsdr
-
- A = p_want - pres_zone
- B = entropy_want(i) - entropy
-
- dAdT = -dpt
- dAdrho = -(ONE-rfrac)*delr*g_zone - dpd
- dBdT = -dst
- dBdrho = -dsd
-
- dtemp = (B - (dBdrho/dAdrho)*A)/ &
- ((dBdrho/dAdrho)*dAdT - dBdT)
-
- drho = -(A + dAdT*dtemp)/dAdrho
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- temp_zone = max(0.9_dp_t*temp_zone, &
- min(temp_zone + dtemp, 1.1_dp_t*temp_zone))
-
-
- ! if (A < TOL .and. B < ETOL) then
- if (abs(drho) < TOL*dens_zone .and. abs(dtemp) < TOL*temp_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate up'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho
- call bl_error('Error: HSE non-convergence')
-
- endif
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p, s)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- ! update the thermodynamics in this zone
- model_kepler_hse(i,idens) = dens_zone
- model_kepler_hse(i,itemp) = temp_zone
- model_kepler_hse(i,ipres) = pres_zone
- model_kepler_hse(i,ientr) = eos_state%s
- model_kepler_hse(i,isndspd) = &
- sqrt(eos_state%gam1*eos_state%p/eos_state%rho)
-
- enddo
-
- if (abs(model_kepler_hse(1,idens) - central_density) < TOL*central_density) then
- converged_central_density = .true.
- exit
- endif
-
- central_density = model_kepler_hse(1,idens)
-
- enddo
-
- if (.NOT. converged_central_density) then
- print *, 'ERROR: central density iterations did not converge'
- call bl_error('ERROR: non-convergence')
- endif
-
-
- print *, 'converged central density = ', model_kepler_hse(1,idens)
- print *, ' '
-
- !===========================================================================
- ! compute the full HSE model using our new central density and temperature,
- ! and the temperature structure as dictated by the Kepler model.
- !===========================================================================
-
- print *, 'putting Kepler model into HSE on our grid...'
-
- ! compute the enclosed mass
- delr = delrl(1) + delrr(1)
- M_enclosed(1) = FOUR3RD*M_PI*delr**3*model_kepler_hse(1,idens)
-
- fluff = .FALSE.
-
- do i = 2, nr
-
- ! use previous zone as initial guess for T, rho
- dens_zone = model_kepler_hse(i-1,idens)
- temp_zone = model_kepler_hse(i-1,itemp)
-
- xn(:) = model_kepler_hse(i,ispec:nvar)
-
- ! compute the gravitational acceleration on the interface between zones
- ! i-1 and i
- g_zone = -Gconst*M_enclosed(i-1)/(xznr(i-1)*xznr(i-1))
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- converged_hse = .FALSE.
-
- if (.not. fluff) then
-
- delr = delrl(i) + delrr(i-1)
- rfrac = delrr(i-1)/delr
-
- do iter = 1, MAX_ITER
-
-
- ! HSE differencing
- p_want = model_kepler_hse(i-1,ipres) + &
- delr*((ONE-rfrac)*dens_zone + rfrac*model_kepler_hse(i-1,idens))*g_zone
-
- temp_zone = model_kepler_hse(i,itemp)
-
- if (model_kepler_hse(i-1,idens) .lt. temp_fluff_cutoff) then
- temp_zone = temp_fluff
- end if
-
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
- drho = (p_want - pres_zone)/(dpd - (ONE-rfrac)*delr*g_zone)
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- if (dens_zone < low_density_cutoff) then
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- index_hse_fluff = i
- exit
-
- endif
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate up'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho
- call bl_error('Error: HSE non-convergence')
-
- endif
-
- if (temp_zone < temp_fluff) then
- temp_zone = temp_fluff
- endif
-
- else
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- endif
-
-
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
-
- ! update the thermodynamics in this zone
- model_kepler_hse(i,idens) = dens_zone
- model_kepler_hse(i,itemp) = temp_zone
- model_kepler_hse(i,ipres) = pres_zone
- model_kepler_hse(i,ientr) = eos_state%s
- model_kepler_hse(i,isndspd) = &
- sqrt(eos_state%gam1*eos_state%p/eos_state%rho)
-
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_kepler_hse(i,idens)
-
- enddo
-
-
- !===========================================================================
- ! compute the alternate model using the same central density and
- ! temperature, but assuming that we are isentropic (and in HSE).
- !===========================================================================
-
- print *, 'creating isentropic model...'
-
- ! as an initial guess, use the Kepler HSE model
- model_isentropic_hse(:,:) = model_kepler_hse(:,:)
-
- entropy_want(:) = model_isentropic_hse(1,ientr)
-
- fluff = .false.
- isentropic = .true.
-
- ! keep track of the mass enclosed below the current zone
- delr = delrl(1) + delrr(1)
- M_enclosed(1) = FOUR3RD*M_PI*delr**3*model_isentropic_hse(1,idens)
-
- do i = 2, nr
-
- ! use previous zone as initial guess for T, rho
- dens_zone = model_isentropic_hse(i-1,idens)
- temp_zone = model_isentropic_hse(i-1,itemp)
-
- xn(:) = model_isentropic_hse(i,ispec:nvar)
-
- g_zone = -Gconst*M_enclosed(i-1)/(xznr(i-1)*xznr(i-1))
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
- if (.not. fluff) then
-
- delr = delrl(i) + delrr(i-1)
- rfrac = delrr(i-1)/delr
-
- do iter = 1, MAX_ITER
-
- if (isentropic) then
-
- p_want = model_isentropic_hse(i-1,ipres) + &
- delr*((ONE-rfrac)*dens_zone + rfrac*model_isentropic_hse(i-1,idens))*g_zone
-
-
- ! now we have two functions to zero:
- ! A = p_want - p(rho,T)
- ! B = entropy_want - s(rho,T)
- ! We use a two dimensional Taylor expansion and find the deltas
- ! for both density and temperature
-
- ! (t, rho) -> (p, s)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpt = eos_state%dpdt
- dpd = eos_state%dpdr
- dst = eos_state%dsdt
- dsd = eos_state%dsdr
-
- A = p_want - pres_zone
- B = entropy_want(i) - entropy
-
- dAdT = -dpt
- dAdrho = (ONE-rfrac)*delr*g_zone - dpd
- dBdT = -dst
- dBdrho = -dsd
-
- dtemp = (B - (dBdrho/dAdrho)*A)/ &
- ((dBdrho/dAdrho)*dAdT - dBdT)
-
- drho = -(A + dAdT*dtemp)/dAdrho
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- temp_zone = max(0.9_dp_t*temp_zone, &
- min(temp_zone + dtemp, 1.1_dp_t*temp_zone))
-
-
- if (dens_zone < low_density_cutoff) then
-
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
- ! if (A < TOL .and. B < ETOL) then
- if (abs(drho) < TOL*dens_zone .and. abs(dtemp) < TOL*temp_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- else
-
- ! do isothermal
- p_want = model_isentropic_hse(i-1,ipres) + &
- delr*((ONE-rfrac)*dens_zone + rfrac*model_isentropic_hse(i-1,idens))*g_zone
-
- temp_zone = temp_fluff
-
- ! (t, rho) -> (p, s)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- drho = (p_want - pres_zone)/(dpd - (ONE-rfrac)*delr*g_zone)
-
- dens_zone = max(0.9*dens_zone, &
- min(dens_zone + drho, 1.1*dens_zone))
-
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- if (dens_zone < low_density_cutoff) then
-
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
- endif
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate up'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho
- call bl_error('Error: HSE non-convergence')
-
- endif
-
- if (temp_zone < temp_fluff) then
- temp_zone = temp_fluff
- isentropic = .false.
- endif
-
- else
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- endif
-
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p, s)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- ! update the thermodynamics in this zone
- model_isentropic_hse(i,idens) = dens_zone
- model_isentropic_hse(i,itemp) = temp_zone
- model_isentropic_hse(i,ipres) = pres_zone
- model_isentropic_hse(i,ientr) = eos_state%s
- model_isentropic_hse(i,isndspd) = &
- sqrt(eos_state%gam1*eos_state%p/eos_state%rho)
-
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i))* &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_isentropic_hse(i,idens)
-
- enddo
-
-
- !===========================================================================
- ! compute a hybrid model -- isentropic in the interior, Kepler's temperature
- ! structure outside.
- !===========================================================================
-
- print *, 'creating hybrid model...'
- print *, ' '
- eint_hybrid = 0.0
-
-
- max_temp = maxval(model_kepler_hse(:,itemp))
- i_isentropic = -1
- do i = 1, nr
- model_hybrid_hse(i,:) = model_isentropic_hse(i,:)
-
- if (model_kepler_hse(i,itemp) > model_isentropic_hse(i,itemp)) then
-
- ! there will be a few regions in the very, very center where
- ! the kepler temperature may be slightly higher than the
- ! isentropic, but we are still not done with isentropic.
- ! i_isentropic is an index that keeps track of when we switch
- ! to the original kepler model "for real". This is used for
- ! diagnostics. We require the temperature to have dropped by
- ! 10% from the central value at least...
- if (i_isentropic == -1 .and. &
- model_isentropic_hse(i,itemp) < 0.9*max_temp) i_isentropic = i
-
- model_hybrid_hse(i,itemp) = model_kepler_hse(i,itemp)
- endif
-
- enddo
-
- ! the outer part of the star will be using the original kepler
- ! temperature structure. Because the hybrid model might hit the
- ! fluff region earlier or later than the kepler model, reset the
- ! temperatures in the fluff region to the last valid kepler zone.
- model_hybrid_hse(index_hse_fluff:,itemp) = model_kepler_hse(index_hse_fluff-1,itemp)
-
-
- ! compute the enclosed mass
- delr = delrl(1) + delrr(1)
- M_enclosed(1) = FOUR3RD*M_PI*delr**3*model_hybrid_hse(1,idens)
-
- fluff = .FALSE.
-
- do i = 2, nr
-
- ! use previous zone as initial guess for T, rho
- dens_zone = model_hybrid_hse(i-1,idens)
- temp_zone = model_hybrid_hse(i-1,itemp)
-
- xn(:) = model_hybrid_hse(i,ispec:nvar)
-
- ! compute the gravitational acceleration on the interface between zones
- ! i-1 and i
- g_zone = -Gconst*M_enclosed(i-1)/(xznr(i-1)*xznr(i-1))
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- converged_hse = .FALSE.
-
- if (.not. fluff) then
-
- delr = delrl(i) + delrr(i-1)
- rfrac = delrr(i-1)/delr
-
- do iter = 1, MAX_ITER
-
-
- ! HSE differencing
- p_want = model_hybrid_hse(i-1,ipres) + &
- delr*((ONE-rfrac)*dens_zone + rfrac*model_hybrid_hse(i-1,idens))*g_zone
-
- temp_zone = model_hybrid_hse(i,itemp)
-
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
- drho = (p_want - pres_zone)/(dpd - (ONE-rfrac)*delr*g_zone)
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- if (dens_zone <= low_density_cutoff) then
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate up'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho
- call bl_error('Error: HSE non-convergence')
-
- endif
-
- if (temp_zone < temp_fluff) then
- temp_zone = temp_fluff
- endif
-
- else
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- endif
-
-
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p)
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
-
- ! update the thermodynamics in this zone
- model_hybrid_hse(i,idens) = dens_zone
- model_hybrid_hse(i,itemp) = temp_zone
- model_hybrid_hse(i,ipres) = pres_zone
- model_hybrid_hse(i,ientr) = eos_state%s
- model_hybrid_hse(i,isndspd) = &
- sqrt(eos_state%gam1*eos_state%p/eos_state%rho)
-
- eint_hybrid = eint_hybrid + &
- dens_zone*eos_state%e*FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)
-
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_hybrid_hse(i,idens)
-
- enddo
-
-
-
-
-
-
- !===========================================================================
- ! output
- !===========================================================================
-
- !---------------------------------------------------------------------------
- ! kepler model
- !---------------------------------------------------------------------------
-
- ipos = index(model_file, '.raw')
- outfile = model_file(1:ipos-1) // '.hse'
-
- write(num,'(i8)') nr
-
- outfile = trim(outfile) // '.' // trim(adjustl(num))
-
- print *, 'writing HSE Kepler model to ', trim(outfile)
-
- open (unit=50, file=outfile, status="unknown")
-
- write (50,1001) "# npts = ", nr
- write (50,1001) "# num of variables = ", 3 + nspec
- write (50,1002) "# density"
- write (50,1002) "# temperature"
- write (50,1002) "# pressure"
-
- do n = 1, nspec
- write (50,1003) "# ", spec_names(n)
- enddo
-
-1001 format(a, i5)
-1002 format(a)
-1003 format(a,a)
-
- do i = 1, nr
-
- write (50,1000) xzn_hse(i), model_kepler_hse(i,idens), model_kepler_hse(i,itemp), model_kepler_hse(i,ipres), &
- (model_kepler_hse(i,ispec-1+n), n=1,nspec)
-
- enddo
-
- close (unit=50)
-
-
- ! compute the enclosed mass
- delr = delrl(1) + delrr(1)
- M_enclosed(1) = FOUR3RD*M_PI*delr**3*model_kepler_hse(1,idens)
-
- do i = 2, nr
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_kepler_hse(i,idens)
- enddo
-
- print *, 'total mass = ', real(M_enclosed(nr)), ' g = ', real(M_enclosed(nr)/M_solar), ' solar masses'
-
-
- ! compute the maximum HSE error
- max_hse_error = -1.d30
-
- do i = 2, nr-1
- g_zone = -Gconst*M_enclosed(i-1)/xznr(i-1)**2
-
- delr = delrl(i) + delrr(i-1)
- dpdr = (model_kepler_hse(i,ipres) - model_kepler_hse(i-1,ipres))/delr
-
- rfrac = delrr(i-1)/delr
- rhog = ((1.0_dp_t-rfrac)*model_kepler_hse(i,idens) + rfrac*model_kepler_hse(i-1,idens))*g_zone
-
- if (dpdr /= ZERO .and. model_kepler_hse(i+1,idens) > low_density_cutoff) then
- max_hse_error = max(max_hse_error, abs(dpdr - rhog)/abs(dpdr))
- endif
- enddo
-
- print *, 'maximum HSE error = ', max_hse_error
- print *, ' '
-
- !---------------------------------------------------------------------------
- ! isentropic model
- !---------------------------------------------------------------------------
-
- ipos = index(model_file, '.raw')
- outfile = model_file(1:ipos-1) // '.isentropic.hse'
-
- write(num,'(i8)') nr
-
- outfile = trim(outfile) // '.' // trim(adjustl(num))
-
- print *, 'writing HSE isentropic model to ', trim(outfile)
-
- open (unit=50, file=outfile, status="unknown")
-
- write (50,1001) "# npts = ", nr
- write (50,1001) "# num of variables = ", 3 + nspec
- write (50,1002) "# density"
- write (50,1002) "# temperature"
- write (50,1002) "# pressure"
-
- do n = 1, nspec
- write (50,1003) "# ", spec_names(n)
- enddo
-
- do i = 1, nr
-
- write (50,1000) xzn_hse(i), model_isentropic_hse(i,idens), model_isentropic_hse(i,itemp), model_isentropic_hse(i,ipres), &
- (model_isentropic_hse(i,ispec-1+n), n=1,nspec)
-
- enddo
-
- close (unit=50)
-
-
- ! compute the enclosed mass
- delr = delrl(1) + delrr(1)
- M_enclosed(1) = FOUR3RD*M_PI*delr**3*model_isentropic_hse(1,idens)
-
- do i = 2, nr
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_isentropic_hse(i,idens)
- enddo
-
- print *, 'total mass = ', real(M_enclosed(nr)), ' g = ', real(M_enclosed(nr)/M_solar), ' solar masses'
-
-
- ! compute the maximum HSE error
- max_hse_error = -1.d30
-
- do i = 2, nr-1
- g_zone = -Gconst*M_enclosed(i-1)/xznr(i-1)**2
-
- delr = delrl(i) + delrr(i-1)
- dpdr = (model_isentropic_hse(i,ipres) - model_isentropic_hse(i-1,ipres))/delr
-
- rfrac = delrr(i-1)/delr
- rhog = ((1.0_dp_t-rfrac)*model_isentropic_hse(i,idens) + rfrac*model_isentropic_hse(i-1,idens))*g_zone
-
- if (dpdr /= ZERO .and. model_isentropic_hse(i+1,idens) > low_density_cutoff) then
- max_hse_error = max(max_hse_error, abs(dpdr - rhog)/abs(dpdr))
- endif
- enddo
-
- print *, 'maximum HSE error = ', max_hse_error
- print *, ' '
-
-
- !---------------------------------------------------------------------------
- ! hybrid model
- !---------------------------------------------------------------------------
-
- ipos = index(model_file, '.raw')
- outfile = model_file(1:ipos-1) // '.hybrid.hse'
-
- write(num,'(i8)') nr
-
- outfile = trim(outfile) // '.' // trim(adjustl(num))
-
- print *, 'writing HSE hybrid model to ', trim(outfile)
-
- open (unit=50, file=outfile, status="unknown")
-
- write (50,1001) "# npts = ", nr
- write (50,1001) "# num of variables = ", 3 + nspec
- write (50,1002) "# density"
- write (50,1002) "# temperature"
- write (50,1002) "# pressure"
-
- do n = 1, nspec
- write (50,1003) "# ", spec_names(n)
- enddo
-
- do i = 1, nr
-
- write (50,1000) xzn_hse(i), model_hybrid_hse(i,idens), model_hybrid_hse(i,itemp), model_hybrid_hse(i,ipres), &
- (model_hybrid_hse(i,ispec-1+n), n=1,nspec)
-
- enddo
-
- close (unit=50)
-
-
- ! compute the enclosed mass
- delr = delrl(1) + delrr(1)
- M_enclosed(1) = FOUR3RD*M_PI*delr**3*model_hybrid_hse(1,idens)
-
- do i = 2, nr
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_hybrid_hse(i,idens)
- enddo
-
- print *, 'total mass = ', real(M_enclosed(nr)), ' g = ', real(M_enclosed(nr)/M_solar), ' solar masses'
- print *, 'mass of convective region = ', real(M_enclosed(i_isentropic)), ' g = ', &
- real(M_enclosed(i_isentropic)/M_solar), ' solar masses'
- print *, 'radius of convective region = ', real(xzn_hse(i_isentropic)), ' cm'
-
- ! compute the maximum HSE error
- max_hse_error = -1.d30
-
- do i = 2, nr-1
- g_zone = -Gconst*M_enclosed(i-1)/xznr(i-1)**2
-
- delr = delrl(i) + delrr(i-1)
- dpdr = (model_hybrid_hse(i,ipres) - model_hybrid_hse(i-1,ipres))/delr
-
- rfrac = delrr(i-1)/delr
- rhog = ((1.0_dp_t-rfrac)*model_hybrid_hse(i,idens) + rfrac*model_hybrid_hse(i-1,idens))*g_zone
-
- if (dpdr /= ZERO .and. model_hybrid_hse(i+1,idens) > low_density_cutoff) then
- max_hse_error = max(max_hse_error, abs(dpdr - rhog)/abs(dpdr))
- endif
- enddo
-
- print *, 'maximum HSE error = ', max_hse_error
-
-
-
- ! output the entropy
-
- outfile = model_file(1:ipos-1) // '.entropy'
- outfile = trim(outfile) // '.' // trim(adjustl(num))
-
- open (unit=60, file=outfile, status="unknown")
-
- do i = 1, nr
- write (60,1000) xzn_hse(i), model_kepler_hse(i,ientr)
- enddo
-
- close (unit=60)
-
-
- ! compute the mass enclosed inside the anelastic_cutoff
- delr = delrl(1) + delrr(1)
- M_enclosed_anel = FOUR3RD*M_PI*delr**3*model_hybrid_hse(1,idens)
- do i = 2, nr
- if (model_hybrid_hse(i,idens) >= anelastic_cutoff) then
- M_enclosed_anel = M_enclosed_anel + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i)) * &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_hybrid_hse(i,idens)
- else
- exit
- endif
- enddo
-
- print *, ' '
- print *, 'mass within anelastic_cutoff (', real(anelastic_cutoff), ') =', &
- real(M_enclosed_anel/M_solar), 'solar masses'
-
-
- ! compute the central sound speed
- print *, 'sound speed at center of star = ', model_hybrid_hse(1,isndspd)
-
-
- ! compute the gravitational potential energy
- M_center = FOUR3RD*M_PI*xzn_hse(1)**3*model_hybrid_hse(1,idens)
-
- ! dU = - G M dM / r; dM = 4 pi r**2 rho dr --> dU = - 4 pi G r rho dr
- grav_ener = -FOUR*M_PI*Gconst*M_center*xzn_hse(1)*model_hybrid_hse(1,idens)*(xznr(1) - xznl(1))
-
-
- do i = 2, nr
- if (model_hybrid_hse(i,idens) >= anelastic_cutoff) then
- M_center = M_center + &
- FOUR3RD*M_PI*(xzn_hse(i) - xznl(i)) * &
- (xzn_hse(i)**2 +xznl(i)*xzn_hse(i) + xznl(i)**2)*model_hybrid_hse(i,idens) + &
- FOUR3RD*M_PI*(xznr(i-1) - xzn_hse(i-1)) * &
- (xznr(i-1)**2 +xzn_hse(i-1)*xznr(i-1) + xzn_hse(i-1)**2)*model_hybrid_hse(i-1,idens)
-
- ! dU = - G M dM / r; dM = 4 pi r**2 rho dr --> dU = - 4 pi G r rho dr
- grav_ener = grav_ener - &
- FOUR*M_PI*Gconst*M_center*xzn_hse(i)*model_hybrid_hse(i,idens)*(xznr(i) - xznl(i))
- else
- exit
- endif
- enddo
-
- print *, "gravitational potential energy = ", grav_ener
- print *, "internal energy = ", eint_hybrid
-
-end program init_1d_irreg
-
-
-
-
-
- function interpolate(r, npts, model_r, model_var)
-
- use bl_types
-
- implicit none
-
-
- ! given the array of model coordinates (model_r), and variable (model_var),
- ! find the value of model_var at point r using linear interpolation.
- ! Eventually, we can do something fancier here.
-
- real(kind=dp_t) :: interpolate
- real(kind=dp_t), intent(in) :: r
- integer :: npts
- real(kind=dp_t), dimension(npts) :: model_r, model_var
-
- real(kind=dp_t) :: slope
- real(kind=dp_t) :: minvar, maxvar
-
- integer :: i, id
-
- ! find the location in the coordinate array where we want to interpolate
- do i = 1, npts
- if (model_r(i) >= r) exit
- enddo
-
- id = i
-
- if (id == 1) then
-
- slope = (model_var(id+1) - model_var(id))/(model_r(id+1) - model_r(id))
- interpolate = slope*(r - model_r(id)) + model_var(id)
-
- ! safety check to make sure interpolate lies within the bounding points
- !minvar = min(model_var(id+1),model_var(id))
- !maxvar = max(model_var(id+1),model_var(id))
- !interpolate = max(interpolate,minvar)
- !interpolate = min(interpolate,maxvar)
-
- else
-
- slope = (model_var(id) - model_var(id-1))/(model_r(id) - model_r(id-1))
- interpolate = slope*(r - model_r(id)) + model_var(id)
-
- ! safety check to make sure interpolate lies within the bounding points
- minvar = min(model_var(id),model_var(id-1))
- maxvar = max(model_var(id),model_var(id-1))
- interpolate = max(interpolate,minvar)
- interpolate = min(interpolate,maxvar)
-
- endif
-
- return
-
- end function interpolate
diff --git a/Util/initial_models/kepler_hybrid/kepler_new_6.25e8.dat b/Util/initial_models/kepler_hybrid/kepler_new_6.25e8.dat
deleted file mode 100644
index 30e931ccf..000000000
--- a/Util/initial_models/kepler_hybrid/kepler_new_6.25e8.dat
+++ /dev/null
@@ -1,180 +0,0 @@
-# VERSION 10104 -- Thu Aug 27 17:55:20 2009 UTC -- created by woosley on banzai.ucolick.org from file /data/woosley/banzai/u/woosley/cdef/fudgc#t8eq625
- grid cell outer total mass cell outer radius cell outer velocity cell density cell temperature cell pressure cell specific energy cell specific entropy cell angular velocity cell A_bar cell Y_e stability NETWORK neutrons H1 He3 He4 C12 N14 O16 Ne20 Mg24 Si28 S32 Ar36 Ca40 Ti44 Cr48 Fe52 Fe54 Ni56 Fe56 'Fe'
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diff --git a/Util/initial_models/kepler_hybrid/kepler_new_6.25e8.raw b/Util/initial_models/kepler_hybrid/kepler_new_6.25e8.raw
deleted file mode 100644
index 100db714a..000000000
--- a/Util/initial_models/kepler_hybrid/kepler_new_6.25e8.raw
+++ /dev/null
@@ -1,186 +0,0 @@
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diff --git a/Util/initial_models/kepler_hybrid/kepler_new_6.5e8.dat b/Util/initial_models/kepler_hybrid/kepler_new_6.5e8.dat
deleted file mode 100644
index deabc92f1..000000000
--- a/Util/initial_models/kepler_hybrid/kepler_new_6.5e8.dat
+++ /dev/null
@@ -1,180 +0,0 @@
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diff --git a/Util/initial_models/kepler_hybrid/kepler_new_6.e8.dat b/Util/initial_models/kepler_hybrid/kepler_new_6.e8.dat
deleted file mode 100644
index 61e134d83..000000000
--- a/Util/initial_models/kepler_hybrid/kepler_new_6.e8.dat
+++ /dev/null
@@ -1,180 +0,0 @@
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diff --git a/Util/initial_models/kepler_hybrid/model_6.e8.raw b/Util/initial_models/kepler_hybrid/model_6.e8.raw
deleted file mode 100644
index cbe6988ea..000000000
--- a/Util/initial_models/kepler_hybrid/model_6.e8.raw
+++ /dev/null
@@ -1,186 +0,0 @@
-# npts = 178
-# num of variables = 6
-# density
-# temperature
-# pressure
-# carbon-12
-# oxygen-16
-# magnesium-24
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-7.389E+07 4.510E+08 2.112E+08 1.648E+26 4.975E-01 4.983E-01 0.00418008
-7.485E+07 4.339E+08 2.068E+08 1.564E+26 4.975E-01 4.983E-01 0.00417908
-7.581E+07 4.174E+08 2.025E+08 1.484E+26 4.975E-01 4.983E-01 0.00417807
-7.676E+07 4.016E+08 1.983E+08 1.408E+26 4.975E-01 4.983E-01 0.00417707
-7.771E+07 3.863E+08 1.942E+08 1.336E+26 4.975E-01 4.983E-01 0.00417706
-7.866E+07 3.715E+08 1.902E+08 1.268E+26 4.975E-01 4.983E-01 0.00417606
-7.961E+07 3.573E+08 1.863E+08 1.203E+26 4.975E-01 4.983E-01 0.00417506
-8.056E+07 3.436E+08 1.824E+08 1.141E+26 4.975E-01 4.983E-01 0.00417405
-8.150E+07 3.303E+08 1.787E+08 1.081E+26 4.975E-01 4.983E-01 0.00417305
-8.245E+07 3.175E+08 1.750E+08 1.025E+26 4.975E-01 4.983E-01 0.00417304
-8.340E+07 3.052E+08 1.715E+08 9.716E+25 4.975E-01 4.983E-01 0.00417204
-8.434E+07 2.933E+08 1.680E+08 9.205E+25 4.975E-01 4.983E-01 0.00417104
-8.529E+07 2.817E+08 1.645E+08 8.719E+25 4.975E-01 4.983E-01 0.00417103
-8.624E+07 2.706E+08 1.612E+08 8.256E+25 4.975E-01 4.983E-01 0.00417003
-8.719E+07 2.599E+08 1.579E+08 7.814E+25 4.975E-01 4.983E-01 0.00417003
-8.815E+07 2.495E+08 1.547E+08 7.394E+25 4.975E-01 4.983E-01 0.00416903
-8.911E+07 2.394E+08 1.515E+08 6.993E+25 4.975E-01 4.983E-01 0.00416902
-9.007E+07 2.297E+08 1.484E+08 6.611E+25 4.975E-01 4.983E-01 0.00416802
-9.103E+07 2.204E+08 1.454E+08 6.247E+25 4.975E-01 4.983E-01 0.00416802
-9.200E+07 2.113E+08 1.424E+08 5.900E+25 4.975E-01 4.983E-01 0.00416802
-9.298E+07 2.025E+08 1.395E+08 5.569E+25 4.975E-01 4.983E-01 0.00416702
-9.396E+07 1.940E+08 1.366E+08 5.254E+25 4.975E-01 4.983E-01 0.00416702
-9.495E+07 1.858E+08 1.334E+08 4.953E+25 5.000E-01 5.000E-01 5.79985e-11
-9.594E+07 1.778E+08 1.327E+08 4.667E+25 5.000E-01 5.000E-01 7.477e-25
-9.694E+07 1.701E+08 1.319E+08 4.394E+25 5.000E-01 5.000E-01 4.568e-25
-9.795E+07 1.627E+08 1.312E+08 4.133E+25 5.000E-01 5.000E-01 2.782e-25
-9.897E+07 1.554E+08 1.305E+08 3.886E+25 5.000E-01 5.000E-01 1.688e-25
-1.000E+08 1.484E+08 1.298E+08 3.649E+25 5.000E-01 5.000E-01 1.021e-25
-1.010E+08 1.417E+08 1.290E+08 3.424E+25 5.000E-01 5.000E-01 6.149e-26
-1.021E+08 1.351E+08 1.283E+08 3.210E+25 5.000E-01 5.000E-01 3.688e-26
-1.032E+08 1.288E+08 1.276E+08 3.006E+25 5.000E-01 5.000E-01 2.202e-26
-1.042E+08 1.226E+08 1.269E+08 2.812E+25 5.000E-01 5.000E-01 1.308e-26
-1.053E+08 1.167E+08 1.262E+08 2.627E+25 5.000E-01 5.000E-01 7.725e-27
-1.064E+08 1.109E+08 1.254E+08 2.451E+25 5.000E-01 5.000E-01 4.536e-27
-1.076E+08 1.053E+08 1.247E+08 2.283E+25 5.000E-01 5.000E-01 2.646e-27
-1.087E+08 9.991E+07 1.240E+08 2.124E+25 5.000E-01 5.000E-01 1.531e-27
-1.099E+08 9.467E+07 1.233E+08 1.972E+25 5.000E-01 5.000E-01 8.792e-28
-1.111E+08 8.958E+07 1.225E+08 1.828E+25 5.000E-01 5.000E-01 5.003e-28
-1.123E+08 8.465E+07 1.218E+08 1.692E+25 5.000E-01 5.000E-01 2.819e-28
-1.135E+08 7.988E+07 1.210E+08 1.562E+25 5.000E-01 5.000E-01 1.572e-28
-1.148E+08 7.525E+07 1.203E+08 1.439E+25 5.000E-01 5.000E-01 8.658e-29
-1.161E+08 7.077E+07 1.195E+08 1.322E+25 5.000E-01 5.000E-01 4.707e-29
-1.174E+08 6.642E+07 1.187E+08 1.211E+25 5.000E-01 5.000E-01 2.521e-29
-1.188E+08 6.220E+07 1.180E+08 1.106E+25 5.000E-01 5.000E-01 1.328e-29
-1.202E+08 5.806E+07 1.171E+08 1.006E+25 5.000E-01 5.000E-01 6.812e-30
-1.218E+08 5.390E+07 1.163E+08 9.071E+24 5.000E-01 5.000E-01 3.326e-30
-1.235E+08 4.961E+07 1.153E+08 8.086E+24 5.000E-01 5.000E-01 1.503e-30
-1.256E+08 4.509E+07 1.142E+08 7.080E+24 5.000E-01 5.000E-01 6.049e-31
-1.280E+08 4.021E+07 1.129E+08 6.035E+24 5.000E-01 5.000E-01 2.04e-31
-1.308E+08 3.519E+07 1.115E+08 5.009E+24 5.000E-01 5.000E-01 5.759e-32
-1.338E+08 3.027E+07 1.098E+08 4.057E+24 5.000E-01 5.000E-01 1.373e-32
-1.372E+08 2.547E+07 1.078E+08 3.182E+24 5.000E-01 5.000E-01 2.568e-33
-1.411E+08 2.077E+07 1.053E+08 2.384E+24 5.000E-01 5.000E-01 3.29e-34
-1.459E+08 1.615E+07 1.020E+08 1.666E+24 5.000E-01 5.000E-01 2.182e-35
-1.521E+08 1.158E+07 9.686E+07 1.034E+24 5.000E-01 5.000E-01 0
-1.614E+08 6.976E+06 8.675E+07 4.943E+23 5.000E-01 5.000E-01 0
diff --git a/Util/initial_models/lagrangian_planar/GNUmakefile b/Util/initial_models/lagrangian_planar/GNUmakefile
deleted file mode 100644
index c9422ecfe..000000000
--- a/Util/initial_models/lagrangian_planar/GNUmakefile
+++ /dev/null
@@ -1,32 +0,0 @@
-# Makefile for the init_1d initial model generator
-
-NDEBUG :=
-MPI :=
-OMP :=
-
-COMP := gfortran
-
-MKVERBOSE := t
-
-
-# location of top-level MAESTRO directory
-MAESTRO_TOP_DIR = ../../..
-
-
-# EOS and network
-EOS_DIR := helmeos
-
-NETWORK_DIR := general_null
-GENERAL_NET_INPUTS := $(MAESTRO_TOP_DIR)/Microphysics/networks/$(NETWORK_DIR)/xrb.net
-
-
-
-# the local sources needed to build the initial model generator
-MODEL_SOURCES := init_1d.f90
-
-
-include ../GInitModels.mak
-
-
-
-
diff --git a/Util/initial_models/lagrangian_planar/README b/Util/initial_models/lagrangian_planar/README
deleted file mode 100644
index 1a6a9499e..000000000
--- a/Util/initial_models/lagrangian_planar/README
+++ /dev/null
@@ -1,3 +0,0 @@
-This is a generic initial model routine that takes an starting model
-from a 1-d Lagrangian stellar evolution code and puts it onto a
-uniform grid and then enforces HSE.
\ No newline at end of file
diff --git a/Util/initial_models/lagrangian_planar/_params b/Util/initial_models/lagrangian_planar/_params
deleted file mode 100644
index 3828068b3..000000000
--- a/Util/initial_models/lagrangian_planar/_params
+++ /dev/null
@@ -1,20 +0,0 @@
-¶ms
-
- model_file = "xrb_new.raw"
-
- model_prefix = "xrb_new"
-
- nx = 1536
-
- temp_cutoff = 1.d6
-
- model_shift = 1.e6
-
- xmin = 0.0
- xmax = 9216.0
-
- g_const = -2.4679d14
-
- low_density_cutoff = 1.d-4
-
-/
diff --git a/Util/initial_models/lagrangian_planar/init_1d.f90 b/Util/initial_models/lagrangian_planar/init_1d.f90
deleted file mode 100755
index 9995536b1..000000000
--- a/Util/initial_models/lagrangian_planar/init_1d.f90
+++ /dev/null
@@ -1,530 +0,0 @@
-!! The model is placed into HSE by the following differencing:
-!!
-!! (1/dr) [ _i -
_{i-1} ] = (1/2) [ _i + _{i-1} ] g
-!!
-!! This will be iterated over in tandem with the EOS call,
-!! P(i-1) = P_eos(rho(i-1), T(i-1), X(i-1)
-!!
-
-program init_1d
-
- use bl_types
- use bl_constants_module
- use bl_error_module
- use eos_module, only: eos_input_rt, eos, eos_init
- use eos_type_module, only: eos_t
- use extern_probin_module, only: use_eos_coulomb
- use network, only : nspec, network_species_index, spec_names, network_init
- use fundamental_constants_module, only: Gconst
- use model_parser_module
-
- implicit none
-
- integer :: i, n
-
- character(len=128) :: params_file
-
- real (kind=dp_t), DIMENSION(nspec) :: xn
-
- real (kind=dp_t), allocatable :: xzn_hse(:), xznl_hse(:), xznr_hse(:)
- real (kind=dp_t), allocatable :: model_hse(:,:)
-
- real :: A
-
- integer ::nx
-
- integer :: lun1, lun2
-
- real (kind=dp_t) :: xmin, xmax, dCoord
-
- real (kind=dp_t) :: dens_zone, temp_zone, pres_zone, entropy
- real (kind=dp_t) :: dpd
-
- real (kind=dp_t) :: p_want, drho, dtemp, delx
-
- real (kind=dp_t) :: g_zone, g_const, M_enclosed
- logical :: do_invsq_grav
-
- real (kind=dp_t), parameter :: TOL = 1.e-10
-
- integer, parameter :: MAX_ITER = 250
-
- integer :: iter
-
- logical :: converged_hse, fluff
-
- real (kind=dp_t) :: low_density_cutoff, temp_cutoff, smallx, max_T
- real (kind=dp_t) :: model_shift
-
- integer :: index_base
-
- character (len=256) :: outfile, outfile2
- character (len=8) :: num
- character (len=32) :: dxstr
- character (len=32) :: num_to_unitstring
- character (len=64) :: model_file
-
- real (kind=dp_t) :: max_hse_error, dpdr, rhog
-
- character (len=128) :: model_prefix
-
- integer :: narg
-
- type (eos_t) :: eos_state
-
- namelist /params/ nx, model_file, xmin, xmax, g_const, &
- temp_cutoff, do_invsq_grav, &
- low_density_cutoff, model_prefix, model_shift
-
- ! determine if we specified a runtime parameters file or use the default
- narg = command_argument_count()
-
- if (narg == 0) then
- params_file = "_params"
- else
- call get_command_argument(1, value = params_file)
- endif
-
-
- ! define defaults for the parameters for this model
- nx = 640
-
- model_file = "model.in"
-
- model_shift = 0.0_dp_t
-
- xmin = 0.0_dp_t
- xmax = 2.e3_dp_t
-
- do_invsq_grav = .false.
- g_const = -1.0
-
- model_prefix = "model"
-
- low_density_cutoff = 1.d-4
- temp_cutoff = 1.d6
-
- smallx = 1.d-10
-
-
- ! this comes in via extern_probin_module -- override the default
- ! here if we want
- use_eos_coulomb = .true.
-
-
- ! initialize the EOS and network
- call eos_init()
- call network_init()
-
- ! check the namelist for any changed parameters
- open(unit=11, file=params_file, status="old", action="read")
- read(unit=11, nml=params)
- close(unit=11)
-
-
- ! start by reading in the Lagrangian initial model
- call read_model_file(model_file)
-
- ! apply the shift
- do i = 1, npts_model
- model_r(i) = model_r(i) - model_shift
- enddo
-
-
-!-----------------------------------------------------------------------------
-! Create a 1-d uniform grid that is identical to the mesh that we are
-! mapping onto, and then we want to force it into HSE on that mesh.
-!-----------------------------------------------------------------------------
-
- ! allocate storage
- allocate(xzn_hse(nx))
- allocate(xznl_hse(nx))
- allocate(xznr_hse(nx))
- allocate(model_hse(nx,nvars_model))
-
-
- ! compute the coordinates of the new gridded function
- dCoord = (xmax - xmin) / dble(nx)
-
- do i = 1, nx
- xznl_hse(i) = xmin + (dble(i) - ONE)*dCoord
- xzn_hse(i) = xmin + (dble(i) - HALF)*dCoord
- xznr_hse(i) = xmin + (dble(i))*dCoord
- enddo
-
-
-!-----------------------------------------------------------------------------
-! put the model onto our new uniform grid
-!-----------------------------------------------------------------------------
-
- fluff = .false.
-
- do i = 1, nx
- do n = 1, nvars_model
- if (n == itemp_model) then
- model_hse(i,n) = max(temp_cutoff, interpolate(xzn_hse(i), n, interpolate_top=.true.))
- else
- model_hse(i,n) = interpolate(xzn_hse(i), n)
- endif
- enddo
-
- ! make it all thermodynamically consistent
- eos_state%rho = model_hse(i,idens_model)
- eos_state%T = model_hse(i,itemp_model)
- eos_state%xn(:) = model_hse(i,ispec_model:ispec_model-1+nspec)
-
- call eos(eos_input_rt, eos_state)
-
- model_hse(i,ipres_model) = eos_state%p
- enddo
-
-
- ! find the index to integrate from by looking for the peak temperature
- index_base = -1
- max_T = -1.0_dp_t
-
- do i = 1, nx
- if (model_hse(i,itemp_model) > max_T) then
- index_base = i
- max_T = model_hse(i,itemp_model)
- endif
- enddo
-
- if (index_base == -1) then
- call bl_error('ERROR: invalid base_height')
- endif
-
- print *, 'index_base = ', index_base
-
- ! make the base thermodynamics consistent for this base point -- that is
- ! what we will integrate from!
- eos_state%rho = model_hse(index_base,idens_model)
- eos_state%T = model_hse(index_base,itemp_model)
- eos_state%xn(:) = model_hse(index_base,ispec_model:ispec_model-1+nspec)
-
- call eos(eos_input_rt, eos_state)
-
- model_hse(index_base,ipres_model) = eos_state%p
-
-
-!-----------------------------------------------------------------------------
-! HSE + entropy solve
-!-----------------------------------------------------------------------------
-
- ! the HSE state will be done respecting the interpolated temperature
- ! from the initial model. When the temperature drops below T_lo,
- ! we floor it.
-
- !---------------------------------------------------------------------------
- ! integrate up
- !---------------------------------------------------------------------------
- do i = index_base+1, nx
-
- delx = xzn_hse(i) - xzn_hse(i-1)
-
- ! compute the gravitation acceleration at the lower edge
- if (do_invsq_grav) then
- g_zone = -Gconst*M_enclosed/xznl_hse(i)**2
- else
- g_zone = g_const
- endif
-
- ! we've already set initial guesses for density, temperature, and
- ! composition
- dens_zone = model_hse(i,idens_model)
- temp_zone = max(temp_cutoff, model_hse(i,itemp_model))
- xn(:) = model_hse(i,ispec_model:ispec_model-1+nspec)
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
- do iter = 1, MAX_ITER
-
- ! what pressure does HSE say we want?
- p_want = model_hse(i-1,ipres_model) + &
- delx*0.5*(dens_zone + model_hse(i-1,idens_model))*g_zone
-
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- drho = (p_want - pres_zone)/(dpd - 0.5*delx*g_zone)
-
- dens_zone = max(0.9*dens_zone, &
- min(dens_zone + drho, 1.1*dens_zone))
-
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- if (dens_zone < low_density_cutoff) then
- dens_zone = low_density_cutoff
- temp_zone = temp_cutoff
- converged_hse = .TRUE.
- exit
- endif
-
- enddo
-
-
- if (.NOT. converged_hse) then
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate up'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho, dtemp
- call bl_error('Error: HSE non-convergence')
- endif
-
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- ! update the thermodynamics in this zone
- model_hse(i,idens_model) = dens_zone
- model_hse(i,itemp_model) = temp_zone
- model_hse(i,ipres_model) = pres_zone
-
- ! to make this process converge faster, set the density in the
- ! next zone to the density in this zone
- ! model_hse(i+1,idens) = dens_zone
-
- enddo
-
-
- !---------------------------------------------------------------------------
- ! integrate down -- using the temperature profile defined above
- !---------------------------------------------------------------------------
- do i = index_base-1, 1, -1
-
- delx = xzn_hse(i+1) - xzn_hse(i)
-
- ! compute the gravitation acceleration at the upper edge
- if (do_invsq_grav) then
- g_zone = -Gconst*M_enclosed/xznr_hse(i)**2
- else
- g_zone = g_const
- endif
-
- ! we already set the temperature and composition profiles
- temp_zone = max(temp_cutoff, model_hse(i,itemp_model))
- xn(:) = model_hse(i,ispec_model:ispec_model-1+nspec)
-
- ! use our previous initial guess for density
- dens_zone = model_hse(i,idens_model)
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
- do iter = 1, MAX_ITER
-
- ! get the pressure we want from the HSE equation, just the
- ! zone below the current. Note, we are using an average of
- ! the density of the two zones as an approximation of the
- ! interface value -- this means that we need to iterate for
- ! find the density and pressure that are consistent
-
- ! HSE differencing
- p_want = model_hse(i+1,ipres_model) - &
- delx*0.5*(dens_zone + model_hse(i+1,idens_model))*g_zone
-
-
- ! we will take the temperature already defined in model_hse
- ! so we only need to zero:
- ! A = p_want - p(rho)
-
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- A = p_want - pres_zone
-
- drho = A/(dpd + 0.5*delx*g_zone)
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
-
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate down'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho
- call bl_error('Error: HSE non-convergence')
-
- endif
-
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- ! update the thermodynamics in this zone
- model_hse(i,idens_model) = dens_zone
- model_hse(i,itemp_model) = temp_zone
- model_hse(i,ipres_model) = pres_zone
-
- enddo
-
- write(num,'(i8)') nx
-
- dxstr = num_to_unitstring(dCoord)
-
- outfile = trim(model_prefix) // ".hse" // ".dx_" // trim(adjustl(dxstr))
- outfile2 = trim(outfile) // ".extras"
-
- open (newunit=lun1, file=outfile, status="unknown")
- open (newunit=lun2, file=outfile2, status="unknown")
-
- write (lun1,1001) "# npts = ", nx
- write (lun1,1001) "# num of variables = ", nvars_model
- write (lun1,1002) "# density"
- write (lun1,1002) "# temperature"
- write (lun1,1002) "# pressure"
-
- do n = 1, nspec
- write (lun1, 1003) "# ", spec_names(n)
- enddo
-
-1000 format (1x, 100(g26.16, 1x))
-1001 format (a, i5)
-1002 format (a)
-1003 format (a,a)
-
- do i = 1, nx
- write (lun1,1000) xzn_hse(i), model_hse(i,idens_model), &
- model_hse(i,itemp_model), model_hse(i,ipres_model), &
- (model_hse(i,ispec_model-1+n), n=1,nspec)
- enddo
-
-
- write (lun2,1001), "# npts = ", nx
- write (lun2,1001), "# num of variables = ", 2
- write (lun2,1002), "# entropy"
- write (lun2,1002), "# c_s"
-
- ! test: bulk EOS call -- Maestro will do this once we are mapped, so make
- ! sure that we are in HSE with updated thermodynamics
- do i = 1, nx
- eos_state%rho = model_hse(i,idens_model)
- eos_state%T = model_hse(i,itemp_model)
- eos_state%xn(:) = model_hse(i,ispec_model:ispec_model-1+nspec)
-
- call eos(eos_input_rt, eos_state)
-
- model_hse(i,ipres_model) = eos_state%p
-
- write (lun2,1000), xzn_hse(i), eos_state%s, eos_state%cs
- enddo
-
- ! compute the maximum HSE error
- max_hse_error = -1.d30
-
- do i = 2, nx-1
-
- ! compute the gravitation acceleration at the lower edge
- if (do_invsq_grav) then
- g_zone = -Gconst*M_enclosed/xznl_hse(i)**2
- else
- g_zone = g_const
- endif
-
- dpdr = (model_hse(i,ipres_model) - model_hse(i-1,ipres_model))/delx
- rhog = HALF*(model_hse(i,idens_model) + model_hse(i-1,idens_model))*g_zone
-
- if (dpdr /= ZERO .and. model_hse(i+1,idens_model) > low_density_cutoff) then
- max_hse_error = max(max_hse_error, abs(dpdr - rhog)/abs(dpdr))
- endif
-
- enddo
-
- print *, 'maximum HSE error = ', max_hse_error
- print *, ' '
-
- close (unit=lun1)
- close (unit=lun2)
-
-end program init_1d
-
-
-function num_to_unitstring(value)
-
- use bl_types
- implicit none
-
- real (kind=dp_t) :: value
- character (len=32) :: num_to_unitstring
- character (len=16) :: temp
-
- if (value > 1.d5) then
-
- ! work in km
- write(temp,'(f6.3)') value/1.d5
- num_to_unitstring = trim(temp) // "km"
- else
-
- ! work in cm
- if (value > 1.d3) then
- write(temp,'(f8.3)') value
- num_to_unitstring = trim(temp) // "cm"
-
- else
- write(temp,'(f6.3)') value
- num_to_unitstring = trim(temp) // "cm"
- endif
-
- endif
-
- return
-end function num_to_unitstring
-
-
diff --git a/Util/initial_models/lagrangian_planar/xrb_new.raw b/Util/initial_models/lagrangian_planar/xrb_new.raw
deleted file mode 100644
index d974d0f29..000000000
--- a/Util/initial_models/lagrangian_planar/xrb_new.raw
+++ /dev/null
@@ -1,263 +0,0 @@
-# npts = 252
-# num of variables = 9
-# density
-# temperature
-# hydrogen-1
-# helium-4
-# oxygen-14
-# oxygen-15
-# neon-18
-# silicon-25
-# iron-56
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-1.00018246111284E+06 8.86362789687716E+08 3.25125720733078E+08 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.000E+00 1.000E+00
-1.00028908937672E+06 8.46452036629534E+08 3.20997887050845E+08 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.000E+00 1.000E+00
-1.00040618790956E+06 8.03850709654461E+08 3.17025333400611E+08 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.000E+00 1.000E+00
-1.00053374746912E+06 7.58919881965912E+08 3.13347919950076E+08 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.000E+00 1.000E+00
-1.00067162257214E+06 7.12092438697396E+08 3.10087542753234E+08 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.000E+00 1.000E+00
-1.00081953024873E+06 6.63860428635514E+08 3.07330214751293E+08 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.000E+00 1.000E+00
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-1.00639182821525E+06 1.762E+05 4.208E+08 6.863E-01 2.558E-01 1.136E-04 1.552E-03 1.726E-02 8.636E-03 3.599E-24
-1.00640093930547E+06 1.725E+05 4.154E+08 6.863E-01 2.558E-01 1.135E-04 1.553E-03 1.727E-02 8.633E-03 3.648E-24
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-1.00660311692682E+06 9.906E+04 2.966E+08 6.864E-01 2.559E-01 1.147E-04 1.573E-03 1.733E-02 8.348E-03 5.449E-24
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-1.00665664396082E+06 8.267E+04 2.651E+08 6.865E-01 2.560E-01 1.156E-04 1.582E-03 1.733E-02 8.262E-03 6.650E-24
-1.00667710705688E+06 7.675E+04 2.532E+08 6.866E-01 2.560E-01 1.161E-04 1.587E-03 1.733E-02 8.222E-03 7.419E-24
-1.00669937001844E+06 7.054E+04 2.402E+08 6.867E-01 2.561E-01 1.169E-04 1.594E-03 1.732E-02 8.161E-03 8.703E-24
-1.00672391559321E+06 6.398E+04 2.259E+08 6.869E-01 2.563E-01 1.182E-04 1.603E-03 1.729E-02 8.066E-03 1.085E-23
-1.00675147798113E+06 5.697E+04 2.098E+08 6.878E-01 2.572E-01 1.243E-04 1.645E-03 1.711E-02 7.612E-03 2.161E-23
-1.00678327095752E+06 4.939E+04 1.917E+08 6.880E-01 2.573E-01 1.256E-04 1.646E-03 1.707E-02 7.517E-03 2.384E-23
-1.00682157793863E+06 4.099E+04 1.697E+08 6.915E-01 2.605E-01 1.473E-04 1.748E-03 1.628E-02 5.861E-03 6.216E-23
-1.00687174516882E+06 3.129E+04 1.431E+08 6.922E-01 2.610E-01 1.479E-04 1.715E-03 1.593E-02 5.690E-03 6.333E-23
-1.00695963539707E+06 1.786E+04 1.121E+08 7.169E-01 2.800E-01 2.053E-05 1.014E-04 7.765E-07 1.381E-07 7.296E-27
diff --git a/Util/initial_models/spherical/GNUmakefile b/Util/initial_models/spherical/GNUmakefile
deleted file mode 100644
index 0ca4f5d59..000000000
--- a/Util/initial_models/spherical/GNUmakefile
+++ /dev/null
@@ -1,27 +0,0 @@
-NDEBUG :=
-MPI :=
-OMP :=
-
-COMP := gfortran
-
-MKVERBOSE := t
-
-
-# location of top-level MAESTRO directory
-MAESTRO_TOP_DIR = ../../..
-
-
-# EOS and network
-EOS_DIR := helmeos
-
-NETWORK_DIR := general_null
-GENERAL_NET_INPUTS := $(MAESTRO_TOP_DIR)/Microphysics/networks/$(NETWORK_DIR)/ignition_wdconvect.net
-
-
-# the local sources needed to build the initial model generator
-MODEL_SOURCES := init_1d.f90
-
-
-include ../GInitModels.mak
-
-
diff --git a/Util/initial_models/spherical/_params b/Util/initial_models/spherical/_params
deleted file mode 100644
index 683ebea6d..000000000
--- a/Util/initial_models/spherical/_params
+++ /dev/null
@@ -1,18 +0,0 @@
-¶ms
-
- nx = 1280
- dens_base = 2.6e9
- temp_base = 6.0e8
-
- dens_conv_zone = 1.3e8
-
- low_density_cutoff = 1.e-3
- temp_fluff = 1.e7
-
- xmin = 0.0
- xmax = 5.e8
-
- cfrac = 0.3
-/
-
-
diff --git a/Util/initial_models/spherical/_params_rhoc_1e9_M_1.1 b/Util/initial_models/spherical/_params_rhoc_1e9_M_1.1
deleted file mode 100644
index ac7ec80c4..000000000
--- a/Util/initial_models/spherical/_params_rhoc_1e9_M_1.1
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 2560
- dens_base = 1.e9
- temp_base = 6.0e8
-
- dens_conv_zone = -1.0
- M_conv_zone = 1.1
-
- low_density_cutoff = 1.e-3
- temp_fluff = 1.e7
-
- xmin = 0.0
- xmax = 5.12e8
-
- cfrac = 0.3
-
- prefix = "WD_rhoc_1.e9_M_1.1"
-
-/
-
-
diff --git a/Util/initial_models/spherical/_params_rhoc_2.5e9_M_1.1 b/Util/initial_models/spherical/_params_rhoc_2.5e9_M_1.1
deleted file mode 100644
index 276744328..000000000
--- a/Util/initial_models/spherical/_params_rhoc_2.5e9_M_1.1
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 2560
- dens_base = 2.5e9
- temp_base = 6.0e8
-
- dens_conv_zone = -1.0
- M_conv_zone = 1.1
-
- low_density_cutoff = 1.e-3
- temp_fluff = 1.e7
-
- xmin = 0.0
- xmax = 5.12e8
-
- cfrac = 0.3
-
- prefix = "WD_rhoc_2.5e9_M_1.1"
-
-/
-
-
diff --git a/Util/initial_models/spherical/_params_rhoc_2e9_M_1.1 b/Util/initial_models/spherical/_params_rhoc_2e9_M_1.1
deleted file mode 100644
index af943ebb8..000000000
--- a/Util/initial_models/spherical/_params_rhoc_2e9_M_1.1
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 2560
- dens_base = 2.e9
- temp_base = 6.0e8
-
- dens_conv_zone = -1.0
- M_conv_zone = 1.1
-
- low_density_cutoff = 1.e-3
- temp_fluff = 1.e7
-
- xmin = 0.0
- xmax = 5.12e8
-
- cfrac = 0.3
-
- prefix = "WD_rhoc_2.e9_M_1.1"
-
-/
-
-
diff --git a/Util/initial_models/spherical/_params_rhoc_3.5e9_M_1.1 b/Util/initial_models/spherical/_params_rhoc_3.5e9_M_1.1
deleted file mode 100644
index 9e3e65200..000000000
--- a/Util/initial_models/spherical/_params_rhoc_3.5e9_M_1.1
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 2560
- dens_base = 3.5e9
- temp_base = 6.0e8
-
- dens_conv_zone = -1.0
- M_conv_zone = 1.1
-
- low_density_cutoff = 1.e-3
- temp_fluff = 1.e7
-
- xmin = 0.0
- xmax = 5.12e8
-
- cfrac = 0.3
-
- prefix = "WD_rhoc_3.5e9_M_1.1"
-
-/
-
-
diff --git a/Util/initial_models/spherical/_params_rhoc_3.5e9_M_1.1.hot b/Util/initial_models/spherical/_params_rhoc_3.5e9_M_1.1.hot
deleted file mode 100644
index 3e69211dd..000000000
--- a/Util/initial_models/spherical/_params_rhoc_3.5e9_M_1.1.hot
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 3840
- dens_base = 3.5e9
- temp_base = 6.25e8
-
- dens_conv_zone = -1.0
- M_conv_zone = 1.1
-
- low_density_cutoff = 1.e-3
- temp_fluff = 1.e7
-
- xmin = 0.0
- xmax = 5.12e8
-
- cfrac = 0.3
-
- prefix = "WD_rhoc_3.5e9_M_1.1.hot"
-
-/
-
-
diff --git a/Util/initial_models/spherical/_params_rhoc_3e9_M_1.1 b/Util/initial_models/spherical/_params_rhoc_3e9_M_1.1
deleted file mode 100644
index 5cdcafa96..000000000
--- a/Util/initial_models/spherical/_params_rhoc_3e9_M_1.1
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 2560
- dens_base = 3.e9
- temp_base = 6.0e8
-
- dens_conv_zone = -1.0
- M_conv_zone = 1.1
-
- low_density_cutoff = 1.e-3
- temp_fluff = 1.e7
-
- xmin = 0.0
- xmax = 5.12e8
-
- cfrac = 0.3
-
- prefix = "WD_rhoc_3.e9_M_1.1"
-
-/
-
-
diff --git a/Util/initial_models/spherical/_params_rhoc_4.5e9_M_1.1 b/Util/initial_models/spherical/_params_rhoc_4.5e9_M_1.1
deleted file mode 100644
index b12b7f652..000000000
--- a/Util/initial_models/spherical/_params_rhoc_4.5e9_M_1.1
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 2560
- dens_base = 4.5e9
- temp_base = 6.0e8
-
- dens_conv_zone = -1.0
- M_conv_zone = 1.1
-
- low_density_cutoff = 1.e-3
- temp_fluff = 1.e7
-
- xmin = 0.0
- xmax = 5.12e8
-
- cfrac = 0.3
-
- prefix = "WD_rhoc_4.5e9_M_1.1"
-
-/
-
-
diff --git a/Util/initial_models/spherical/_params_rhoc_4e9_M_1.1 b/Util/initial_models/spherical/_params_rhoc_4e9_M_1.1
deleted file mode 100644
index 0ac225bcd..000000000
--- a/Util/initial_models/spherical/_params_rhoc_4e9_M_1.1
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 2560
- dens_base = 4.e9
- temp_base = 6.0e8
-
- dens_conv_zone = -1.0
- M_conv_zone = 1.1
-
- low_density_cutoff = 1.e-3
- temp_fluff = 1.e7
-
- xmin = 0.0
- xmax = 5.12e8
-
- cfrac = 0.3
-
- prefix = "WD_rhoc_4.e9_M_1.1"
-
-/
-
-
diff --git a/Util/initial_models/spherical/_params_rhoc_5e9_M_1.1 b/Util/initial_models/spherical/_params_rhoc_5e9_M_1.1
deleted file mode 100644
index eb6f53942..000000000
--- a/Util/initial_models/spherical/_params_rhoc_5e9_M_1.1
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 2560
- dens_base = 5.e9
- temp_base = 6.0e8
-
- dens_conv_zone = -1.0
- M_conv_zone = 1.1
-
- low_density_cutoff = 1.e-3
- temp_fluff = 1.e7
-
- xmin = 0.0
- xmax = 5.12e8
-
- cfrac = 0.3
-
- prefix = "WD_rhoc_5.e9_M_1.1"
-
-/
-
-
diff --git a/Util/initial_models/spherical/init_1d.f90 b/Util/initial_models/spherical/init_1d.f90
deleted file mode 100644
index 9cc414d2a..000000000
--- a/Util/initial_models/spherical/init_1d.f90
+++ /dev/null
@@ -1,482 +0,0 @@
-!! generate an initial model for spherical geometry with a
-!! uniform composition. Here we take a base density and temperature
-!! and use HSE and constant entropy to generate the model.
-
-program init_1d
-
- use bl_types
- use bl_constants_module
- use bl_error_module
- use eos_module, only: eos, eos_input_rt, eos_init
- use eos_type_module, only: eos_t
- use extern_probin_module, only: use_eos_coulomb
- use network
- use fundamental_constants_module, only: Gconst
-
- implicit none
-
- integer :: i, n
-
- integer :: nx
-
- real (kind=dp_t) :: temp_base, dens_base
- real (kind=dp_t), DIMENSION(nspec) :: xn_base
-
- real (kind=dp_t), allocatable :: xzn_hse(:), xznl(:), xznr(:)
- real (kind=dp_t), allocatable :: model_hse(:,:), M_enclosed(:)
-
- real (kind=dp_t) :: A, B, dAdT, dAdrho, dBdT, dBdrho
-
- ! define convenient indices for the scalars
- integer, parameter :: nvar = 3 + nspec
- integer, parameter :: idens = 1, &
- itemp = 2, &
- ipres = 3, &
- ispec = 4
-
- real (kind=dp_t), parameter :: M_sun = 1.9891e33
-
- ! we'll get the composition indices from the network module
- integer, save :: ic12, io16, img24, iash
- real (kind=dp_t) :: cfrac
-
- integer :: narg
- character(len=128) :: params_file
-
- real (kind=dp_t), save :: xmin, xmax, dCoord
-
- real (kind=dp_t) :: dens_zone, temp_zone, pres_zone, entropy
- real (kind=dp_t) :: dpd, dpt, dsd, dst
-
- real (kind=dp_t) :: p_want, drho, dtemp, delx
- real (kind=dp_t), allocatable :: entropy_store(:), entropy_want(:)
-
- real (kind=dp_t) :: g_zone
-
- real (kind=dp_t), parameter :: TOL = 1.e-10
-
- integer, parameter :: MAX_ITER = 250
-
- integer :: iter
-
- logical :: converged_hse, fluff
-
- real (kind=dp_t), dimension(nspec) :: xn
-
- real (kind=dp_t), save :: low_density_cutoff, temp_fluff, smallx, dens_conv_zone, M_conv_zone
-
- logical :: isentropic
-
- character (len=256) :: outfile, prefix
- character (len=8) num
-
- real (kind=dp_t) :: max_hse_error, dpdr, rhog
-
- integer :: i_conv, i_fluff
-
- type (eos_t) :: eos_state
-
- namelist /params/ nx, dens_base, temp_base, &
- low_density_cutoff, dens_conv_zone, M_conv_zone, temp_fluff, &
- xmin, xmax, &
- cfrac, prefix
-
-
- ! determine if we specified a runtime parameters file or use the default
- narg = command_argument_count()
-
- if (narg == 0) then
- params_file = "_params"
- else
- call get_command_argument(1, value = params_file)
- endif
-
-
- ! define the defaults parameters for this model
- nx = 1280
-
- smallx = 1.d-10
-
- xmin = 0_dp_t
- xmax = 5.d8
-
- dens_base = 2.6d9
- temp_base = 6.d8
-
- dens_conv_zone = -1.d0
- M_conv_zone = 2.0d0
-
-
- low_density_cutoff =1.d-4
- temp_fluff = 1.d7
-
- cfrac = 0.7_dp_t
-
- prefix = "spherical"
-
-
- ! check the namelist for any changed parameters
- open(unit=11, file=params_file, status="old", action="read")
- read(unit=11, nml=params)
- close(unit=11)
-
-
- ! initialize the EOS and network
-
- ! use_eos_coulomb comes in from extern_probin_module -- override
- ! here if desired
- use_eos_coulomb = .true.
- call eos_init()
- call network_init()
-
-
- ! get the species indices
- ic12 = network_species_index("carbon-12")
- io16 = network_species_index("oxygen-16")
-
- img24 = network_species_index("magnesium-24")
- iash = network_species_index("ash")
-
-
- if (ic12 < 0 .or. io16 < 0) then
- call bl_error("ERROR: species not defined")
- endif
-
- if (.not. (img24 > 0 .or. iash > 0)) then
- call bl_error("ERROR: species not defined")
- endif
-
- if (cfrac < 0.0_dp_t .or. cfrac > 1.0_dp_t) then
- call bl_error("ERROR: cfrac must be between 0 and 1")
- endif
-
- xn_base(:) = 0.0_dp_t
- xn_base(ic12) = cfrac
- xn_base(io16) = 1.0_dp_t - cfrac
-
-
-
-!-----------------------------------------------------------------------------
-! Create a 1-d uniform grid that is identical to the mesh that we are
-! mapping onto, and then we want to force it into HSE on that mesh.
-!-----------------------------------------------------------------------------
-
-! allocate storage
- allocate(xzn_hse(nx))
- allocate(xznl(nx))
- allocate(xznr(nx))
- allocate(model_hse(nx,nvar))
- allocate(M_enclosed(nx))
- allocate(entropy_want(nx))
- allocate(entropy_store(nx))
-
-! compute the coordinates of the new gridded function
- dCoord = (xmax - xmin) / dble(nx)
-
- do i = 1, nx
- xznl(i) = xmin + (dble(i) - 1.0_dp_t)*dCoord
- xznr(i) = xmin + (dble(i))*dCoord
- xzn_hse(i) = 0.5_dp_t*(xznl(i) + xznr(i))
- enddo
-
-
-
- fluff = .false.
-
-
-
- ! call the EOS one more time for this zone and then go on to the next
- eos_state%T = temp_base
- eos_state%rho = dens_base
- eos_state%xn(:) = xn_base(:)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- ! make the initial guess be completely uniform
- model_hse(:,idens) = eos_state%rho
- model_hse(:,itemp) = eos_state%T
- model_hse(:,ipres) = eos_state%p
-
- do i = 1, nspec
- model_hse(:,ispec-1+i) = eos_state%xn(i)
- enddo
-
- entropy_want(:) = eos_state%s
-
-
- ! keep track of the mass enclosed below the current zone
- M_enclosed(1) = FOUR3RD*M_PI*(xznr(1)**3 - xznl(1)**3)*model_hse(1,idens)
-
-
-!-----------------------------------------------------------------------------
-! HSE + entropy solve
-!-----------------------------------------------------------------------------
-
- isentropic = .true.
-
- do i = 2, nx
-
- delx = xzn_hse(i) - xzn_hse(i-1)
-
- ! as the initial guess for the temperature and density, use the previous
- ! zone
- dens_zone = model_hse(i-1,idens)
- temp_zone = model_hse(i-1,itemp)
- xn(:) = model_hse(i,ispec:nvar)
-
- g_zone = -Gconst*M_enclosed(i-1)/(xznl(i)*xznl(i))
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
- if (.not. fluff) then
-
- do iter = 1, MAX_ITER
-
- if (isentropic) then
-
- p_want = model_hse(i-1,ipres) + &
- delx*0.5_dp_t*(dens_zone + model_hse(i-1,idens))*g_zone
-
-
- ! now we have two functions to zero:
- ! A = p_want - p(rho,T)
- ! B = entropy_want - s(rho,T)
- ! We use a two dimensional Taylor expansion and find the deltas
- ! for both density and temperature
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpt = eos_state%dpdt
- dpd = eos_state%dpdr
- dst = eos_state%dsdt
- dsd = eos_state%dsdr
-
- A = p_want - pres_zone
- B = entropy_want(i) - entropy
-
- dAdT = -dpt
- dAdrho = 0.5d0*delx*g_zone - dpd
- dBdT = -dst
- dBdrho = -dsd
-
- dtemp = (B - (dBdrho/dAdrho)*A)/ &
- ((dBdrho/dAdrho)*dAdT - dBdT)
-
- drho = -(A + dAdT*dtemp)/dAdrho
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- temp_zone = max(0.9_dp_t*temp_zone, &
- min(temp_zone + dtemp, 1.1_dp_t*temp_zone))
-
-
- ! check if the density falls below our minimum cut-off --
- ! if so, floor it
- if (dens_zone < low_density_cutoff) then
-
- i_fluff = i
-
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
- if (dens_zone < dens_conv_zone .and. isentropic) then
-
- i_conv = i
- isentropic = .false.
-
- endif
-
-
- ! if (A < TOL .and. B < ETOL) then
- if (abs(drho) < TOL*dens_zone .and. abs(dtemp) < TOL*temp_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- else
-
- ! do isothermal
- p_want = model_hse(i-1,ipres) + &
- delx*0.5*(dens_zone + model_hse(i-1,idens))*g_zone
-
- temp_zone = model_hse(i-1,itemp)
-
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- drho = (p_want - pres_zone)/(dpd - 0.5*delx*g_zone)
-
- dens_zone = max(0.9*dens_zone, &
- min(dens_zone + drho, 1.1*dens_zone))
-
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
-
- if (dens_zone < low_density_cutoff) then
-
- i_fluff = i
-
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
-
- endif
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate up'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho
- call bl_error('Error: HSE non-convergence')
-
- endif
-
- if (temp_zone < temp_fluff) then
- temp_zone = temp_fluff
- isentropic = .false.
- endif
-
- else
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- endif
-
-
- ! call the EOS one more time for this zone and then go on to the next
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- ! update the thermodynamics in this zone
- model_hse(i,idens) = dens_zone
- model_hse(i,itemp) = temp_zone
- model_hse(i,ipres) = pres_zone
-
- print *, i, dens_zone, temp_zone
-
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i))* &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_hse(i,idens)
-
- if (M_enclosed(i) > M_conv_zone*M_sun .and. isentropic) then
-
- i_conv = i
- isentropic = .false.
-
- endif
-
- enddo
-
-
- print *, 'mass = ', M_enclosed(nx)/M_sun
-
- write(num,'(i8)') nx
- outfile = trim(prefix) // ".hse." // trim(adjustl(num))
-
-
-
- open (unit=50, file=outfile, status="unknown")
-
- write (50,1001) "# npts = ", nx
- write (50,1001) "# num of variables = ", nvar
- write (50,1002) "# density"
- write (50,1002) "# temperature"
- write (50,1002) "# pressure"
-
- do n = 1, nspec
- write (50,1003) "# ", spec_names(n)
- enddo
-
-1000 format (1x, 12(g26.16, 1x))
-1001 format(a, i5)
-1002 format(a)
-1003 format(a,a)
-
- do i = 1, nx
-
- write (50,1000) xzn_hse(i), model_hse(i,idens), model_hse(i,itemp), model_hse(i,ipres), &
- (model_hse(i,ispec-1+n), n=1,nspec)
-
- enddo
-
-
- ! compute the maximum HSE error
- max_hse_error = -1.d30
-
- do i = 2, nx-1
- g_zone = -Gconst*M_enclosed(i-1)/xznr(i-1)**2
- dpdr = (model_hse(i,ipres) - model_hse(i-1,ipres))/delx
- rhog = HALF*(model_hse(i,idens) + model_hse(i-1,idens))*g_zone
-
- if (dpdr /= ZERO .and. model_hse(i+1,idens) > low_density_cutoff) then
- max_hse_error = max(max_hse_error, abs(dpdr - rhog)/abs(dpdr))
- endif
-
- if (dpdr /= 0) then
- print *, i, real(model_hse(i,idens)), real(model_hse(i,itemp)), real(dpdr), real(rhog), abs(dpdr - rhog)/abs(dpdr)
- endif
- enddo
-
- print *, 'maximum HSE error = ', max_hse_error
- print *, ' '
-
-
- print *, 'total mass = ', M_enclosed(i_fluff)/M_sun
- print *, 'convective zone mass = ', M_enclosed(i_conv)/M_sun
-
-
-
- close (unit=50)
-
-end program init_1d
-
diff --git a/Util/initial_models/sub_chandra/GNUmakefile b/Util/initial_models/sub_chandra/GNUmakefile
deleted file mode 100644
index e86cc6a68..000000000
--- a/Util/initial_models/sub_chandra/GNUmakefile
+++ /dev/null
@@ -1,32 +0,0 @@
-# Makefile for the init_1d initial model generator
-
-NDEBUG :=
-MPI :=
-OMP :=
-
-COMP := gfortran
-
-MKVERBOSE := t
-
-
-# location of top-level MAESTRO directory
-MAESTRO_TOP_DIR = ../../..
-
-
-# EOS and network
-EOS_DIR := helmeos
-
-NETWORK_DIR := general_null
-GENERAL_NET_INPUTS := $(MAESTRO_TOP_DIR)/Microphysics/networks/$(NETWORK_DIR)/triple_alpha_plus_o.net
-
-
-
-# the local sources needed to build the initial model generator
-MODEL_SOURCES := init_1d.f90
-
-
-include ../GInitModels.mak
-
-
-
-
diff --git a/Util/initial_models/sub_chandra/README b/Util/initial_models/sub_chandra/README
deleted file mode 100644
index b9b3bb379..000000000
--- a/Util/initial_models/sub_chandra/README
+++ /dev/null
@@ -1,2 +0,0 @@
-This initial model generator is used for the SCIENCE/sub_chandra
-problem.
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-0.60.M_He-0.001 b/Util/initial_models/sub_chandra/_params.M_WD-0.60.M_He-0.001
deleted file mode 100644
index 58109b3a8..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-0.60.M_He-0.001
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 1024
-
- M_tot = 0.6
- M_He = 0.001
-
- delta = 1.d-6
-
- xmin = 0.d0
- xmax = 1.6d9
-
- temp_core = 1.d7
- temp_base = 1.d7
-
- mixed_co_wd = .true.
-
- low_density_cutoff =1.d-4
- temp_fluff = 1.d7
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-0.60.M_He-0.20 b/Util/initial_models/sub_chandra/_params.M_WD-0.60.M_He-0.20
deleted file mode 100644
index b77a48690..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-0.60.M_He-0.20
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 0.6
- M_He = 0.2
-
- delta = 1.d-6
-
- xmin = 0.d0
- xmax = 1.6d9
-
- temp_core = 1.d7
- temp_base = 4.d8
-
- mixed_co_wd = .true.
-
- low_density_cutoff =1.d-4
- temp_fluff = 1.d5
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.025.hotcutoff.hotbase b/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.025.hotcutoff.hotbase
deleted file mode 100644
index fd0012079..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.025.hotcutoff.hotbase
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 0.8
- M_He = 0.025
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 1.1e9
-
- temp_core = 1.d7
- temp_base = 2.5d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.05.hotcutoff.200MK.5120 b/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.05.hotcutoff.200MK.5120
deleted file mode 100644
index 7139468a4..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.05.hotcutoff.200MK.5120
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 5120
-
- M_tot = 0.8
- M_He = 0.05
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 1.e9
-
- temp_core = 1.d7
- temp_base = 2.d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.05.hotcutoff.250MK.512 b/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.05.hotcutoff.250MK.512
deleted file mode 100644
index 4c0000f9a..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.05.hotcutoff.250MK.512
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 5120
-
- M_tot = 0.8
- M_He = 0.05
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 1.e9
-
- temp_core = 1.d7
- temp_base = 2.5d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.05.hotcutoff.hotbase b/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.05.hotcutoff.hotbase
deleted file mode 100644
index 980cf59aa..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.05.hotcutoff.hotbase
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 0.8
- M_He = 0.05
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 1.e9
-
- temp_core = 1.d7
- temp_base = 2.5d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.100.hotcutoff b/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.100.hotcutoff
deleted file mode 100644
index a3d707164..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-0.8.M_He-0.100.hotcutoff
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 0.8
- M_He = 0.1
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 8.5e8
-
- temp_core = 1.d7
- temp_base = 2.d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-0.80.M_He-0.001 b/Util/initial_models/sub_chandra/_params.M_WD-0.80.M_He-0.001
deleted file mode 100644
index 5e7facaec..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-0.80.M_He-0.001
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 1024
-
- M_tot = 0.8
- M_He = 0.001
-
- delta = 1.d-6
-
- xmin = 0.d0
- xmax = 1.6d9
-
- temp_core = 1.d7
- temp_base = 1.d7
-
- mixed_co_wd = .true.
-
- low_density_cutoff =1.d-4
- temp_fluff = 1.d7
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.025.hotcutoff b/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.025.hotcutoff
deleted file mode 100644
index 462e2c1ec..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.025.hotcutoff
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 1.0
- M_He = 0.025
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 7.5e8
-
- temp_core = 1.d7
- temp_base = 2.d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.05 b/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.05
deleted file mode 100644
index f693646ef..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.05
+++ /dev/null
@@ -1,22 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 1.0
- M_He = 0.05
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 7.5e8
-
- temp_core = 1.d7
- temp_base = 2.d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 1.d5
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.05.Tcutoff b/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.05.Tcutoff
deleted file mode 100644
index 2a56a1c49..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.05.Tcutoff
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 1.0
- M_He = 0.05
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 7.5e8
-
- temp_core = 1.d7
- temp_base = 2.d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 5.d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.05.hotcutoff b/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.05.hotcutoff
deleted file mode 100644
index b6f02a1d6..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.05.hotcutoff
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 1.0
- M_He = 0.05
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 7.5e8
-
- temp_core = 1.d7
- temp_base = 2.d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.05.hotcutoff.512 b/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.05.hotcutoff.512
deleted file mode 100644
index 9655dfd22..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.05.hotcutoff.512
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 5120
-
- M_tot = 1.0
- M_He = 0.05
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 7.5e8
-
- temp_core = 1.d7
- temp_base = 2.d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff b/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff
deleted file mode 100644
index 2c84f23e0..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 1.0
- M_He = 0.1
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 6.5e8
-
- temp_core = 1.d7
- temp_base = 2.d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff.coolbase b/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff.coolbase
deleted file mode 100644
index c17a94b51..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff.coolbase
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 1.0
- M_He = 0.1
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 6.5e8
-
- temp_core = 1.d7
- temp_base = 1.5d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff.coolbase.128 b/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff.coolbase.128
deleted file mode 100644
index de44e35f6..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff.coolbase.128
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 1280
-
- M_tot = 1.0
- M_He = 0.1
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 6.5e8
-
- temp_core = 1.d7
- temp_base = 1.5d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff.coolbase.512 b/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff.coolbase.512
deleted file mode 100644
index fb1d85fda..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff.coolbase.512
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 5120
-
- M_tot = 1.0
- M_He = 0.1
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 6.5e8
-
- temp_core = 1.d7
- temp_base = 1.5d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff.thin b/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff.thin
deleted file mode 100644
index b05e106c7..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.0.M_He-0.1.hotcutoff.thin
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 1.0
- M_He = 0.1
-
- delta = 4.d6
-
- xmin = 0.d0
- xmax = 6.5e8
-
- temp_core = 1.d7
- temp_base = 2.d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.1.M_He-0.05.hotcutoff.175MK b/Util/initial_models/sub_chandra/_params.M_WD-1.1.M_He-0.05.hotcutoff.175MK
deleted file mode 100644
index b039bf9ee..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.1.M_He-0.05.hotcutoff.175MK
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 1.1
- M_He = 0.05
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 6.d8
-
- temp_core = 1.d7
- temp_base = 1.75d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.025.hotcutoff.175MK.5120 b/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.025.hotcutoff.175MK.5120
deleted file mode 100644
index d38bff788..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.025.hotcutoff.175MK.5120
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 5120
-
- M_tot = 1.2
- M_He = 0.025
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 5.d8
-
- temp_core = 1.d7
- temp_base = 1.75d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.05.hotcutoff b/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.05.hotcutoff
deleted file mode 100644
index d536ad602..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.05.hotcutoff
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 1.2
- M_He = 0.05
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 5.d8
-
- temp_core = 1.d7
- temp_base = 2.d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.05.hotcutoff.coolbase b/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.05.hotcutoff.coolbase
deleted file mode 100644
index 711cbab6d..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.05.hotcutoff.coolbase
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 2560
-
- M_tot = 1.2
- M_He = 0.05
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 5.d8
-
- temp_core = 1.d7
- temp_base = 1.5d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.05.hotcutoff.coolbase.3840 b/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.05.hotcutoff.coolbase.3840
deleted file mode 100644
index 6d0834f86..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.05.hotcutoff.coolbase.3840
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 3840
-
- M_tot = 1.2
- M_He = 0.05
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 5.d8
-
- temp_core = 1.d7
- temp_base = 1.75d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.05.hotcutoff.coolbase.5120 b/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.05.hotcutoff.coolbase.5120
deleted file mode 100644
index eed60537e..000000000
--- a/Util/initial_models/sub_chandra/_params.M_WD-1.2.M_He-0.05.hotcutoff.coolbase.5120
+++ /dev/null
@@ -1,23 +0,0 @@
-¶ms
-
- nx = 5120
-
- M_tot = 1.2
- M_He = 0.05
-
- delta = 5.d6
-
- xmin = 0.d0
- xmax = 5.d8
-
- temp_core = 1.d7
- temp_base = 1.75d8
-
- mixed_co_wd = .false.
-
- low_density_cutoff =1.d-4
- temp_fluff = 7.5d7
- smallt = 1.d6
-
-/
-
diff --git a/Util/initial_models/sub_chandra/init_1d.f90 b/Util/initial_models/sub_chandra/init_1d.f90
deleted file mode 100755
index 17aef7d2b..000000000
--- a/Util/initial_models/sub_chandra/init_1d.f90
+++ /dev/null
@@ -1,665 +0,0 @@
-!! generate an initial model for an arbitrary-mass, isothermal C WD
-!! with an isentropic He envelope on the surface.
-
-program init_1d
-
- use bl_types
- use bl_constants_module
- use bl_error_module
- use extern_probin_module, only: use_eos_coulomb
- use eos_module, only: eos_input_rt, eos, eos_init
- use eos_type_module, only: eos_t
- use network
- use fundamental_constants_module, only: Gconst
- use f2kcli
-
- implicit none
-
- integer :: i, n
-
- character(len=128) :: params_file
-
- real (kind=dp_t) :: temp_core, temp_base, delta
- real (kind=dp_t), DIMENSION(nspec) :: xn_core, xn_he
-
- logical :: mixed_co_wd
-
- real (kind=dp_t), allocatable :: xzn_hse(:), xznl(:), xznr(:)
- real (kind=dp_t), allocatable :: model_hse(:,:), M_enclosed(:)
- real (kind=dp_t), allocatable :: cs_hse(:), s_hse(:)
-
- real (kind=dp_t) :: rho_c, rho_c_old, mass_wd, mass_wd_old, drho_c
- real (kind=dp_t) :: rho_he, rho_he_old, mass_he, mass_he_old, drho_he
-
- real (kind=dp_t) :: slope_T, slope_xn(nspec)
-
- real (kind=dp_t) :: A, B, dAdT, dAdrho, dBdT, dBdrho
- logical :: isentropic
-
- real (kind=dp_t) :: test
-
- integer :: nx
-
- ! define convenient indices for the scalars
- integer, parameter :: nvar = 3 + nspec
- integer, parameter :: idens = 1, &
- itemp = 2, &
- ipres = 3, &
- ispec = 4
-
- ! we'll get the composition indices from the network module
- integer, save :: ihe4, ic12, io16
-
- real (kind=dp_t), save :: xmin, xmax, dCoord
-
- real (kind=dp_t) :: dens_zone, temp_zone, pres_zone, entropy
- real (kind=dp_t) :: dpd, dpt, dsd, dst
-
- real (kind=dp_t) :: p_want, drho, dtemp, delx
- real (kind=dp_t) :: entropy_base
-
- real (kind=dp_t) :: g_zone
-
- ! TOL_HSE is the tolerance used when iterating over a zone to force
- ! it into HSE by adjusting the current density (and possibly
- ! temperature). TOL_HSE should be very small (~ 1.e-10).
- real (kind=dp_t), parameter :: TOL_HSE = 1.d-10
-
- ! TOL_WD_MASS is tolerance used for getting the total WD mass equal
- ! to M_tot (defined below). It can be reasonably small, since there
- ! will always be a central density value that can give the desired
- ! WD mass on the grid we use
- real (kind=dp_t), parameter :: TOL_WD_MASS = 1.d-4
-
- ! TOL_HE_MASS is the tolerance used for getting the mass of the He
- ! envelope. This should not be too small, since the values of the
- ! He envelope mass we can achieve will depend on our grid spacing.
- real (kind=dp_t), parameter :: TOL_HE_MASS = 2.d-2
-
-
- integer, parameter :: MAX_ITER = 250
-
- integer :: iter, iter_mass
-
- integer :: icutoff, ihe_layer, ihe_entropy
-
- logical :: converged_hse, fluff, mass_converged
-
- real (kind=dp_t), dimension(nspec) :: xn
-
- real (kind=dp_t) :: low_density_cutoff, temp_fluff, smallx, smallt
-
- real (kind=dp_t) :: M_tot, M_He
- real (kind=dp_t) :: solar_mass = 1.98892d33
-
- character (len=256) :: outfile
- character (len=8) num, mass_wd_str, mass_he_str
-
- real (kind=dp_t) :: max_hse_error, dpdr, rhog
-
- integer :: narg
-
- type (eos_t) :: eos_state
-
- namelist /params/ nx, M_tot, M_He, delta, xmin, xmax, &
- temp_core, temp_base, mixed_co_wd, low_density_cutoff, temp_fluff, smallt
-
-
- ! determine if we specified a runtime parameters file or use the default
- narg = command_argument_count()
-
- if (narg == 0) then
- params_file = "_params"
- else
- call get_command_argument(1, value = params_file)
- endif
-
-
-
- ! define the defaults parameters for this model
- nx = 2560
-
- M_tot = 0.6
- M_He = 0.2
-
- delta = 1.d-6
-
- xmin = 0_dp_t
- xmax = 1.6e9_dp_t
-
- temp_core = 1.d7
- temp_base = 4.d8
-
- mixed_co_wd = .true.
-
- low_density_cutoff =1.d-4
- temp_fluff = 1.d5
- smallt = 1.d5
-
- ! check the namelist for any changed parameters
- open(unit=11, file=trim(params_file), status="old", action="read")
- read(unit=11, nml=params)
- close(unit=11)
-
-
- ! convert the envelope and WD mass into solar masses
- M_tot = M_tot * solar_mass
- M_He = M_He * solar_mass
-
-
- ! this comes in via extern_probin_module, override the default if desired.
- use_eos_coulomb = .true.
-
- smallx = 1.d-10
-
-
- ! initialize the EOS and network
- call eos_init()
- call network_init()
-
-
- ! get the species indices
- ihe4 = network_species_index("helium-4")
- ic12 = network_species_index("carbon-12")
- io16 = network_species_index("oxygen-16")
-
- if (ihe4 < 0 .or. ic12 < 0 .or. io16 < 0) then
- call bl_error("ERROR: species not defined")
- endif
-
- if (mixed_co_wd) then
- xn_core(:) = smallx
- xn_core(ic12) = 0.5_dp_t - 0.5*(nspec - 1)*smallx
- xn_core(io16) = 0.5_dp_t - 0.5*(nspec - 1)*smallx
- else
- xn_core(:) = smallx
- xn_core(ic12) = 1.0_dp_t - (nspec - 1)*smallx
- endif
-
-
- xn_he(:) = smallx
- xn_he(ihe4) = 1.0_dp_t - (nspec - 1)*smallx
-
-
- !----------------------------------------------------------------------------
- ! Create a 1-d uniform grid that is identical to the mesh that we are
- ! mapping onto, and then we want to force it into HSE on that mesh.
- !----------------------------------------------------------------------------
-
- ! allocate storage
- allocate(xzn_hse(nx))
- allocate(xznl(nx))
- allocate(xznr(nx))
- allocate(model_hse(nx,nvar))
- allocate(M_enclosed(nx))
- allocate(cs_hse(nx))
- allocate(s_hse(nx))
-
- ! compute the coordinates of the new gridded function
- dCoord = (xmax - xmin) / dble(nx)
-
- do i = 1, nx
- xznl(i) = xmin + (dble(i) - 1.0_dp_t)*dCoord
- xznr(i) = xmin + (dble(i))*dCoord
- xzn_hse(i) = 0.5_dp_t*(xznl(i) + xznr(i))
- enddo
-
-
- ! We don't know what WD central density will give the desired total
- ! mass, so we need to iterate over central density
-
- ! we will do a secant iteration. rho_c_old is the 'old' guess for
- ! the central density and rho_c is the current guess. After 2
- ! loops, we can start estimating the density required to yield our
- ! desired mass
- rho_c_old = -1.0_dp_t
- rho_c = 1.e9_dp_t ! 1.e9 is a reasonable starting WD central density
-
- ! rho_he_old is the old guess for the density to transition to He,
- ! where we will be isentropic, and rho_he is the currrent guess.
- rho_he_old = -1.0_dp_t
- rho_he = 0.5*rho_c
-
- mass_converged = .false.
-
-
- do iter_mass = 1, MAX_ITER
-
- print *, 'mass iter = ', iter_mass, rho_c, temp_core
-
- fluff = .false.
-
- ! we start at the center of the WD and integrate outward. Initialize
- ! the central conditions.
- eos_state%T = temp_core
- eos_state%rho = rho_c
- eos_state%xn(:) = xn_core(:)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- ! make the initial guess be completely uniform
- model_hse(:,idens) = eos_state%rho
- model_hse(:,itemp) = eos_state%T
- model_hse(:,ipres) = eos_state%p
-
- do i = 1, nspec
- model_hse(:,ispec-1+i) = eos_state%xn(i)
- enddo
-
-
- ! keep track of the mass enclosed below the current zone
- M_enclosed(1) = FOUR3RD*M_PI*(xznr(1)**3 - xznl(1)**3)*model_hse(1,idens)
-
- ihe_layer = -1
- ihe_entropy = -1
-
- !-------------------------------------------------------------------------
- ! HSE + entropy solve
- !-------------------------------------------------------------------------
- do i = 2, nx
-
- delx = xzn_hse(i) - xzn_hse(i-1)
-
- ! as the initial guess for the density, use the previous zone
- dens_zone = model_hse(i-1,idens)
-
- if (dens_zone > rho_he) then
- temp_zone = temp_core
- xn(:) = xn_core(:)
-
- isentropic = .false.
-
- else
-
- if (ihe_layer == -1) then
- ihe_layer = i
- endif
-
- ! determine whether we are starting the ramp up. We will
- ! use a tanh profile, centered at (xzn_hse(ihe_layer) +
- ! FOUR*delta). The "+ FOUR*delta" enables us to capture
- ! the leading edge of the profile. Since rho_he is
- ! computed by considering the integral of He on the grid,
- ! shifting the profile by FOUR*delta doesn't affect the
- ! overall mass.
-
- test = HALF*(ONE + tanh((xzn_hse(i) - xzn_hse(ihe_layer) - FOUR*delta)/delta))
-
- if (test < 0.999d0) then
-
- ! small tanh ramp up regime
- xn(:) = xn_core(:) + HALF*(xn_he(:) - xn_core(:))* &
- (ONE + tanh((xzn_hse(i) - xzn_hse(ihe_layer) - FOUR*delta)/delta))
-
- temp_zone = temp_core + HALF*(temp_base - temp_core)* &
- (ONE + tanh((xzn_hse(i) - xzn_hse(ihe_layer) - FOUR*delta)/delta))
-
- isentropic = .false.
-
- else
-
- ! fully isentropic
- if (ihe_entropy == -1) then
- ihe_entropy = i
- temp_zone = temp_base
- isentropic = .false.
- else
- temp_zone = model_hse(i-1,itemp)
- isentropic = .true.
- endif
-
- xn(:) = xn_he(:)
-
- endif
-
- endif
-
- g_zone = -Gconst*M_enclosed(i-1)/(xznl(i)*xznl(i))
-
-
- !----------------------------------------------------------------------
- ! iteration loop
- !----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
- if (.not. fluff) then
-
- do iter = 1, MAX_ITER
-
-
- if (isentropic) then
-
- p_want = model_hse(i-1,ipres) + &
- delx*0.5_dp_t*(dens_zone + model_hse(i-1,idens))*g_zone
-
-
- ! now we have two functions to zero:
- ! A = p_want - p(rho,T)
- ! B = entropy_base - s(rho,T)
- ! We use a two dimensional Taylor expansion and find the deltas
- ! for both density and temperature
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpt = eos_state%dpdt
- dpd = eos_state%dpdr
- dst = eos_state%dsdt
- dsd = eos_state%dsdr
-
- A = p_want - pres_zone
- B = entropy_base - entropy
-
- dAdT = -dpt
- dAdrho = 0.5d0*delx*g_zone - dpd
- dBdT = -dst
- dBdrho = -dsd
-
- dtemp = (B - (dBdrho/dAdrho)*A)/ &
- ((dBdrho/dAdrho)*dAdT - dBdT)
-
- drho = -(A + dAdT*dtemp)/dAdrho
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- temp_zone = max(0.9_dp_t*temp_zone, &
- min(temp_zone + dtemp, 1.1_dp_t*temp_zone))
-
- ! check if the density falls below our minimum
- ! cut-off -- if so, floor it
- if (dens_zone < low_density_cutoff) then
-
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
- if ( abs(drho) < TOL_HSE*dens_zone .and. &
- abs(dtemp) < TOL_HSE*temp_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- else
- ! the core is isothermal, so we just need to constrain
- ! the density and pressure to agree with the EOS and HSE
-
- ! We difference HSE about the interface between the current
- ! zone and the one just inside.
- p_want = model_hse(i-1,ipres) + &
- delx*0.5*(dens_zone + model_hse(i-1,idens))*g_zone
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- drho = (p_want - pres_zone)/(dpd - 0.5*delx*g_zone)
-
- dens_zone = max(0.9*dens_zone, &
- min(dens_zone + drho, 1.1*dens_zone))
-
- if (abs(drho) < TOL_HSE*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- if (dens_zone < low_density_cutoff) then
-
- icutoff = i
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
- endif
-
- if (temp_zone < temp_fluff .and. isentropic) then
- temp_zone = temp_fluff
- isentropic = .false.
- endif
-
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho
- call bl_error('Error: HSE non-convergence')
-
- endif
-
- else
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- endif
-
-
- ! call the EOS one more time for this zone and then go on
- ! to the next
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- ! determine the entropy that we want to constrain to, if
- ! this is the first zone of the He layer
- if (i == ihe_entropy) then
- entropy_base = entropy
- endif
-
-
- ! update the thermodynamics in this zone
- model_hse(i,idens) = dens_zone
- model_hse(i,itemp) = temp_zone
- model_hse(i,ipres) = pres_zone
-
- model_hse(i,ispec:ispec-1+nspec) = xn(:)
-
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i))* &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_hse(i,idens)
-
- cs_hse(i) = eos_state%cs
- s_hse(i) = eos_state%s
-
- enddo ! end loop over zones
-
-
- ! compute the total mass of the He layer and C/O WD
- mass_he = FOUR3RD*M_PI*(xznr(1)**3 - xznl(1)**3)* &
- model_hse(1,idens)*model_hse(1,ispec-1+ihe4)
-
- mass_wd = FOUR3RD*M_PI*(xznr(1)**3 - xznl(1)**3)*model_hse(1,idens)* &
- (model_hse(1,ispec-1+ic12) + model_hse(1,ispec-1+io16))
-
- do i = 2, icutoff
- mass_he = mass_he + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i))* &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_hse(i,idens)* &
- model_hse(i,ispec-1+ihe4)
-
- mass_wd = mass_wd + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i))* &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_hse(i,idens)* &
- (model_hse(i,ispec-1+ic12) + model_hse(i,ispec-1+io16))
- enddo
-
-
- if (rho_c_old < 0.0_dp_t) then
- ! not enough iterations yet -- store the old central density and
- ! mass and pick a new value
- rho_c_old = rho_c
- mass_wd_old = mass_wd
-
- rho_he_old = rho_he
- mass_he_old = mass_he
-
- rho_c = 0.5*rho_c_old
- rho_he = 0.5*rho_he_old
-
- else
- ! have we converged
- if ( abs(mass_wd - M_tot)/M_tot < TOL_WD_MASS .and. &
- abs(mass_he - M_He)/M_He < TOL_HE_MASS) then
- mass_converged = .true.
- exit
- endif
-
- ! do a secant iteration:
- ! M_tot = M(rho_c) + dM/drho |_rho_c x drho + ...
- drho_c = (M_tot - mass_wd)/ &
- ( (mass_wd - mass_wd_old)/(rho_c - rho_c_old) )
-
- rho_c_old = rho_c
- mass_wd_old = mass_wd
-
- rho_c = min(1.1_dp_t*rho_c_old, &
- max((rho_c + drho_c), 0.9_dp_t*rho_c_old))
-
-
- drho_he = (M_He - mass_he)/ &
- ( (mass_he - mass_he_old)/(rho_he - rho_he_old) )
-
- rho_he_old = rho_he
- mass_he_old = mass_he
-
- rho_he = min(1.1_dp_t*rho_he_old, &
- max((rho_he + drho_he), 0.9_dp_t*rho_he_old))
-
- print *, 'current mass = ', mass_wd/solar_mass, mass_he/solar_mass
-
- endif
-
- enddo ! end mass constraint loop
-
- if (.not. mass_converged) then
- print *, 'ERROR: WD mass did not converge'
- call bl_error("ERROR: mass did not converge")
- endif
-
- print *, 'final masses: '
- print *, ' mass WD: ', mass_wd/solar_mass
- print *, ' mass He: ', mass_He/solar_mass
- print *, ihe_layer
-
-
- ! store the model
- write(num,'(i8)') nx
- write(mass_wd_str,'(f4.2)') mass_wd/solar_mass
- write(mass_he_str,'(f5.3)') mass_He/solar_mass
- !if (mass_He/solar_mass > 0.01) then
- ! write(mass_he_str,'(f4.2)') mass_He/solar_mass
- !else
- ! write(mass_he_str,'(f6.4)') mass_He/solar_mass
- !endif
-
- if (mixed_co_wd) then
- outfile = "sub_chandra.M_WD-" // trim(adjustl(mass_wd_str)) // &
- ".M_He-" // trim(adjustl(mass_he_str)) // &
- ".hse.CO." // trim(adjustl(num))
- else
- outfile = "sub_chandra.M_WD-" // trim(adjustl(mass_wd_str)) // &
- ".M_He-" // trim(adjustl(mass_he_str)) // &
- ".hse.C." // trim(adjustl(num))
- endif
-
- open (unit=50, file=outfile, status="unknown")
-
- write (50,1001) "# npts = ", nx
- write (50,1001) "# num of variables = ", nvar
- write (50,1002) "# density"
- write (50,1002) "# temperature"
- write (50,1002) "# pressure"
-
- do n = 1, nspec
- write (50,1003) "# ", spec_names(n)
- enddo
-
-1000 format (1x, 12(g26.16, 1x))
-1001 format(a, i5)
-1002 format(a)
-1003 format(a,a)
-
- do i = 1, nx
- write (50,1000) xzn_hse(i), model_hse(i,idens), model_hse(i,itemp), model_hse(i,ipres), &
- (model_hse(i,ispec-1+n), n=1,nspec)
- enddo
-
- close (50)
-
-
- ! extra info
- if (mixed_co_wd) then
- outfile = "sub_chandra.M_WD-" // trim(adjustl(mass_wd_str)) // &
- ".M_He-" // trim(adjustl(mass_he_str)) // &
- ".extras.CO." // trim(adjustl(num))
- else
- outfile = "sub_chandra.M_WD-" // trim(adjustl(mass_wd_str)) // &
- ".M_He-" // trim(adjustl(mass_he_str)) // &
- ".extras.C." // trim(adjustl(num))
- endif
-
- open (unit=51, file=outfile, status="unknown")
-
- write (51,1001) "# npts = ", nx
- write (51,1002) "# cs"
- write (51,1002) "# entropy"
-
- do i = 1, nx
- write (51,1000) xzn_hse(i), cs_hse(i), s_hse(i)
- enddo
-
- close (51)
-
- ! compute the maximum HSE error
- max_hse_error = -1.d30
-
- do i = 2, nx-1
- g_zone = -Gconst*M_enclosed(i-1)/xznr(i-1)**2
- dpdr = (model_hse(i,ipres) - model_hse(i-1,ipres))/delx
- rhog = HALF*(model_hse(i,idens) + model_hse(i-1,idens))*g_zone
-
- print *, xzn_hse(i), g_zone*xzn_hse(i)
-
- if (dpdr /= ZERO .and. model_hse(i+1,idens) > low_density_cutoff) then
- max_hse_error = max(max_hse_error, abs(dpdr - rhog)/abs(dpdr))
- endif
-
- enddo
-
- print *, 'maximum HSE error = ', max_hse_error
- print *, ' '
-
-end program init_1d
-
diff --git a/Util/initial_models/test2/GNUmakefile b/Util/initial_models/test2/GNUmakefile
deleted file mode 100644
index b741d4847..000000000
--- a/Util/initial_models/test2/GNUmakefile
+++ /dev/null
@@ -1,25 +0,0 @@
-NDEBUG :=
-MPI :=
-OMP :=
-
-COMP := gfortran
-
-MKVERBOSE := t
-
-# location of top-level MAESTRO directory
-MAESTRO_TOP_DIR := ../../..
-
-# EOS and network
-EOS_DIR := helmeos
-
-NETWORK_DIR := general_null
-GENERAL_NET_INPUTS := $(MAESTRO_TOP_DIR)/Microphysics/networks/$(NETWORK_DIR)/ignition.net
-
-
-# the local sources needed to build the initial model generator
-MODEL_SOURCES := init_1d.f90
-
-
-include ../GInitModels.mak
-
-
diff --git a/Util/initial_models/test2/README b/Util/initial_models/test2/README
deleted file mode 100644
index 6dfed2e26..000000000
--- a/Util/initial_models/test2/README
+++ /dev/null
@@ -1,3 +0,0 @@
-note: this is a standalone procedure from the FLASH lmn_bubble_burn
-setup that was written for paper III. This can be used for both test2
-and test_convect.
diff --git a/Util/initial_models/test2/_params.orig_test_convect b/Util/initial_models/test2/_params.orig_test_convect
deleted file mode 100644
index a88664ed8..000000000
--- a/Util/initial_models/test2/_params.orig_test_convect
+++ /dev/null
@@ -1,25 +0,0 @@
-¶ms
-
- ! this set of parameters appears to reproduce the original initial
- ! model in test_convect, which was used in paper III. Note: Coulomb
- ! corrections we off back then.
-
- do_coulomb = .false.
-
- xmin = 0.0d0
- xmax = 3.6d8
-
- base_height = 1.d8
-
- entropy_jump = 3.d0
- entropy_end = 6.d0
-
- dens_base = 2.6d9
- temp_base = 7.d8
-
- g_zone = -1.5d10
-
- low_density_cutoff = 1.d-4
- temp_fluff = 1.d7
-
-/
diff --git a/Util/initial_models/test2/_params.test2 b/Util/initial_models/test2/_params.test2
deleted file mode 100644
index 1fdb9d49b..000000000
--- a/Util/initial_models/test2/_params.test2
+++ /dev/null
@@ -1,26 +0,0 @@
-¶ms
-
- ! this set of parameters appears to reproduce the
- ! model.hse.cool.coulomb in test2.
-
- nx = 640
-
- do_coulomb = .true.
-
- xmin = 0.0d0
- xmax = 3.6d8
-
- base_height = 5.d7
-
- entropy_jump = 3.d0
- entropy_end = 4.d0
-
- dens_base = 2.6d9
- temp_base = 6.d8
-
- g_zone = -1.5d10
-
- low_density_cutoff = 1.d-4
- temp_fluff = 1.d7
-
-/
diff --git a/Util/initial_models/test2/init_1d.f90 b/Util/initial_models/test2/init_1d.f90
deleted file mode 100755
index dbfbea656..000000000
--- a/Util/initial_models/test2/init_1d.f90
+++ /dev/null
@@ -1,614 +0,0 @@
-!! Create a 1-d hydrostatic, isoentropic atmosphere given the temperature,
-!! composition, and base density. This version allows for an entropy
-!! decrease below a height base_height, to make the lower region
-!! convectively stable.
-!!
-!! The model is placed into HSE by the following differencing:
-!!
-!! (1/dr) [ _i -
_{i-1} ] = (1/2) [ _i + _{i-1} ] g
-!!
-!! We can take _base and _base as given, and use the above
-!! to find all others.
-!!
-!! This will be iterated over in tandem with the EOS call,
-!! P(i-1) = P_eos(rho(i-1), T(i-1), X(i-1)
-!!
-
-program init_1d
-
- use bl_types
- use bl_constants_module
- use bl_error_module
- use eos_module, only: eos_input_rt, eos, eos_init
- use eos_type_module, only: eos_t
- use extern_probin_module, only: use_eos_coulomb
- use network, only : nspec, network_species_index, spec_names, network_init
-
- implicit none
-
- integer :: i, n
-
- character(len=128) :: params_file
-
- real (kind=dp_t) :: temp_base, dens_base
- real (kind=dp_t), DIMENSION(nspec) :: xn_base
-
- real (kind=dp_t), allocatable :: xzn_hse(:)
- real (kind=dp_t), allocatable :: model_hse(:,:)
-
- real :: A, B
-
- integer :: nx
-
- ! define convenient indices for the scalars
- integer, parameter :: nvar = 3 + nspec
- integer, parameter :: idens = 1, &
- itemp = 2, &
- ipres = 3, &
- ispec = 4
-
- ! we'll get the composition from the network module
- integer :: ic12, io16, iash
-
- real (kind=dp_t) :: xmin, xmax, dCoord
-
- real (kind=dp_t) :: dens_zone, temp_zone, pres_zone, entropy
- real (kind=dp_t) :: dpd, dpt, dsd, dst
-
- real (kind=dp_t) :: p_want, drho, dtemp, delx
- real (kind=dp_t), allocatable :: entropy_store(:), entropy_want(:)
-
- real (kind=dp_t) :: g_zone
-
- real (kind=dp_t), parameter :: TOL = 1.e-10
-
- integer, parameter :: MAX_ITER = 250
-
- integer :: iter
-
- logical :: converged_hse, fluff
-
- real (kind=dp_t), dimension(nspec) :: xn
-
- real (kind=dp_t) :: low_density_cutoff, temp_fluff, smallx
-
- real (kind=dp_t) :: entropy_jump, entropy_end, base_height
-
- logical :: do_coulomb
-
- integer :: index_base
-
- real (kind=dp_t) :: slope
-
- logical :: isentropic
-
- character (len=256) :: outfile
- character (len=8) :: num
-
- real (kind=dp_t) :: max_hse_error, dpdr, rhog
-
- integer :: narg
-
- type (eos_t) :: eos_state
-
- namelist /params/ nx, xmin, xmax, base_height, entropy_jump, entropy_end, &
- dens_base, temp_base, g_zone, low_density_cutoff, temp_fluff, do_coulomb
-
- ! determine if we specified a runtime parameters file or use the
- ! default
- narg = command_argument_count()
-
- if (narg == 0) then
- params_file = "_params"
- else
- call get_command_argument(1, value = params_file)
- endif
-
-
- ! define the defaults parameters for this model
- nx = 640
-
- xmin = 0_dp_t
- xmax = 3.6d8
-
- base_height = 1.d8
-
- entropy_jump = 3.d0
- entropy_end = 6.d0
-
- dens_base = 2.6d9
- temp_base = 7.d8
-
- g_zone = -1.5d10
-
- low_density_cutoff = 1.d-4
- temp_fluff = 1.d7
-
-
- ! check the namelist for any changed parameters
- open(unit=11, file=trim(params_file), status="old", action="read")
- read(unit=11, nml=params)
- close(unit=11)
-
-
-
-
- ! EOS stuff
- smallx = 1.d-10
-
- ! this comes in from extern_probin_module -- override here if desired
- use_eos_coulomb = do_coulomb
-
-
- ! initialize the EOS and network
- call eos_init()
- call network_init()
-
-
- ! get the species indices
- ic12 = network_species_index("carbon-12")
- io16 = network_species_index("oxygen-16")
-
- ! ash can be either Mg24 or 'ash', depending on the network
- iash = network_species_index("magnesium-24")
- if (iash < 0) then
- iash = network_species_index("ash")
- endif
-
- if (ic12 < 0 .or. io16 < 0 .or. iash < 0) then
- call bl_error("ERROR: species not defined")
- endif
-
- xn_base(ic12) = 0.3_dp_t
- xn_base(io16) = 0.7_dp_t
- xn_base(iash) = 0.0_dp_t
-
-
-!-----------------------------------------------------------------------------
-! Create a 1-d uniform grid that is identical to the mesh that we are
-! mapping onto, and then we want to force it into HSE on that mesh.
-!-----------------------------------------------------------------------------
-
-! allocate storage
- allocate(xzn_hse(nx))
- allocate(model_hse(nx,nvar))
- allocate(entropy_want(nx))
- allocate(entropy_store(nx))
-
-! compute the coordinates of the new gridded function
- dCoord = (xmax - xmin) / dble(nx)
-
- do i = 1, nx
- xzn_hse(i) = xmin + (dble(i) - 0.5_dp_t)*dCoord
- enddo
-
-
- index_base = -1
-
-! find the index of the base height
- do i = 1, nx
- if (xzn_hse(i) >= base_height) then
- index_base = i
- exit
- endif
- enddo
-
- if (index_base == -1) then
- print *, 'ERROR: base_height not found on grid'
- call bl_error('ERROR: invalid base_height')
- endif
-
-
-
-!-----------------------------------------------------------------------------
-! put the model onto our new uniform grid
-!-----------------------------------------------------------------------------
-
- fluff = .false.
-
- ! all the material above base_height will have constant entropy
- eos_state%T = temp_base
- eos_state%rho = dens_base
- eos_state%xn(:) = xn_base(:)
-
- print *, eos_state%T, eos_state%rho, eos_state%xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- ! make the inital guess be completely uniform
- model_hse(:,idens) = eos_state%rho
- model_hse(:,itemp) = eos_state%T
- model_hse(:,ipres) = eos_state%p
-
- do i = 1, nspec
- model_hse(:,ispec-1+i) = eos_state%xn(i)
- enddo
-
- entropy = eos_state%s
-
- ! set the desired entropy profile
- do i = index_base, nx
-
- ! entropy is constant
- entropy_want(i) = entropy
- entropy_store(i) = entropy_want(i)
- enddo
-
-
- slope = (entropy/entropy_jump - entropy/entropy_end)/ &
- (xzn_hse(index_base) - xzn_hse(1))
-
- do i = index_base-1, 1, -1
-
- ! entropy gradient
- entropy_want(i) = slope*(xzn_hse(i) - xzn_hse(index_base-1)) + entropy/entropy_jump
- entropy_store(i) = entropy_want(i)
- enddo
-
-
-!-----------------------------------------------------------------------------
-! HSE + entropy solve
-!-----------------------------------------------------------------------------
-
-! the HSE state will be done putting creating an isentropic state until
-! the temperature goes below temp_fluff -- then we will do isothermal.
-! also, once the density goes below low_density_cutoff, we stop HSE
-
- isentropic = .true.
-
- !---------------------------------------------------------------------------
- ! integrate up
- !---------------------------------------------------------------------------
- do i = index_base+1, nx
-
- delx = xzn_hse(i) - xzn_hse(i-1)
-
- ! as the initial guess for the temperature and density, use the previous
- ! zone
- dens_zone = model_hse(i-1,idens)
- temp_zone = model_hse(i-1,itemp)
- xn(:) = model_hse(i,ispec:nvar)
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
- if (.not. fluff) then
-
- do iter = 1, MAX_ITER
-
- if (isentropic) then
-
- ! get the pressure we want from the HSE equation, just the
- ! zone below the current. Note, we are using an average of
- ! the density of the two zones as an approximation of the
- ! interface value -- this means that we need to iterate for
- ! find the density and pressure that are consistent
-
- ! furthermore, we need to get the entropy that we need,
- ! which will come from adjusting the temperature in
- ! addition to the density.
-
- ! HSE differencing
- p_want = model_hse(i-1,ipres) + &
- delx*0.5*(dens_zone + model_hse(i-1,idens))*g_zone
-
- ! now we have two functions to zero:
- ! A = p_want - p(rho,T)
- ! B = entropy_want - s(rho,T)
- ! We use a two dimensional Taylor expansion and find the deltas
- ! for both density and temperature
-
-
- ! now we know the pressure and the entropy that we want, so we
- ! need to find the temperature and density through a two
- ! dimensional root find
-
- ! (t, rho) -> (p, s)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpt = eos_state%dpdt
- dpd = eos_state%dpdr
- dst = eos_state%dsdt
- dsd = eos_state%dsdr
-
- A = p_want - pres_zone
- B = entropy_want(i) - entropy
-
- dtemp = ((dsd/(dpd-0.5*delx*g_zone))*A - B)/ &
- (dsd*dpt/(dpd -0.5*delx*g_zone) - dst)
-
- drho = (A - dpt*dtemp)/(dpd - 0.5*delx*g_zone)
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- temp_zone = max(0.9_dp_t*temp_zone, &
- min(temp_zone + dtemp, 1.1_dp_t*temp_zone))
-
-
- ! check if the density falls below our minimum cut-off --
- ! if so, floor it
- if (dens_zone < low_density_cutoff) then
-
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
- ! if (A < TOL .and. B < ETOL) then
- if (abs(drho) < TOL*dens_zone .and. abs(dtemp) < TOL*temp_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- else
-
- ! do isothermal
- p_want = model_hse(i-1,ipres) + &
- delx*0.5*(dens_zone + model_hse(i-1,idens))*g_zone
-
- temp_zone = temp_fluff
-
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- drho = (p_want - pres_zone)/(dpd - 0.5*delx*g_zone)
-
- dens_zone = max(0.9*dens_zone, &
- min(dens_zone + drho, 1.1*dens_zone))
-
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- if (dens_zone < low_density_cutoff) then
-
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
- endif
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate up'
- print *, dens_zone, temp_zone
- print *, p_want, entropy_want(i), entropy
- print *, drho, dtemp
- call bl_error('Error: HSE non-convergence')
-
- endif
-
- if (temp_zone < temp_fluff) then
- temp_zone = temp_fluff
- isentropic = .false.
- endif
-
- else
- dens_zone = low_density_cutoff
- temp_zone = temp_fluff
- endif
-
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- ! update the thermodynamics in this zone
- model_hse(i,idens) = dens_zone
- model_hse(i,itemp) = temp_zone
- model_hse(i,ipres) = pres_zone
- entropy_store(i) = entropy
-
- ! to make this process converge faster, set the density in the next zone to
- ! the density in this zone
- ! model_hse(i+1,idens) = dens_zone
-
- enddo
-
-
- !---------------------------------------------------------------------------
- ! integrate down
- !---------------------------------------------------------------------------
- do i = index_base-1, 1, -1
-
- delx = xzn_hse(i+1) - xzn_hse(i)
-
- ! as the initial guess for the temperature and density, use the previous
- ! zone
- dens_zone = model_hse(i+1,idens)
- temp_zone = model_hse(i+1,itemp)
- xn(:) = model_hse(i,ispec:nvar)
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
- do iter = 1, MAX_ITER
-
- ! get the pressure we want from the HSE equation, just the
- ! zone below the current. Note, we are using an average of
- ! the density of the two zones as an approximation of the
- ! interface value -- this means that we need to iterate for
- ! find the density and pressure that are consistent
-
- ! furthermore, we need to get the entropy that we need,
- ! which will come from adjusting the temperature in
- ! addition to the density.
-
- ! HSE differencing
- p_want = model_hse(i+1,ipres) - &
- delx*0.5*(dens_zone + model_hse(i+1,idens))*g_zone
-
- ! now we have two functions to zero:
- ! A = p_want - p(rho,T)
- ! B = entropy_want - s(rho,T)
- ! We use a two dimensional Taylor expansion and find the deltas
- ! for both density and temperature
-
-
- ! now we know the pressure and the entropy that we want, so we
- ! need to find the temperature and density through a two
- ! dimensional root find
- ! (t, rho) -> (p, s)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpt = eos_state%dpdt
- dpd = eos_state%dpdr
- dst = eos_state%dsdt
- dsd = eos_state%dsdr
-
- A = p_want - pres_zone
- B = entropy_want(i) - entropy
-
- dtemp = ((dsd/(dpd+0.5*delx*g_zone))*A - B)/ &
- (dsd*dpt/(dpd +0.5*delx*g_zone) - dst)
-
- drho = (A - dpt*dtemp)/(dpd + 0.5*delx*g_zone)
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- temp_zone = max(0.9_dp_t*temp_zone, &
- min(temp_zone + dtemp, 1.1_dp_t*temp_zone))
-
-
- if (abs(drho) < TOL*dens_zone .and. abs(dtemp) < TOL*temp_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate down'
- print *, dens_zone, temp_zone
- print *, p_want, entropy_want(i), entropy
- print *, drho, dtemp
- call bl_error('Error: HSE non-convergence')
-
- endif
-
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- ! update the thermodynamics in this zone
- model_hse(i,idens) = dens_zone
- model_hse(i,itemp) = temp_zone
- model_hse(i,ipres) = pres_zone
- entropy_store(i) = entropy
-
-
- enddo
-
- write(num,'(i8)') nx
- outfile = "model.hse." // trim(adjustl(num))
-
- open (unit=50, file=outfile, status="unknown")
-
- write (50,1001) "# npts = ", nx
- write (50,1001) "# num of variables = ", nvar
- write (50,1002) "# density"
- write (50,1002) "# temperature"
- write (50,1002) "# pressure"
-
- do n = 1, nspec
- write (50, 1003) "# ", spec_names(n)
- enddo
-
-1000 format (1x, 12(g26.16, 1x))
-1001 format (a, i5)
-1002 format (a)
-1003 format (a,a)
-
- do i = 1, nx
-
- write (50,1000) xzn_hse(i), model_hse(i,idens), model_hse(i,itemp), model_hse(i,ipres), &
- (model_hse(i,ispec-1+n), n=1,nspec)
-
- enddo
-
- ! compute the maximum HSE error
- max_hse_error = -1.d30
-
- do i = 2, nx-1
- dpdr = (model_hse(i,ipres) - model_hse(i-1,ipres))/delx
- rhog = HALF*(model_hse(i,idens) + model_hse(i-1,idens))*g_zone
-
- if (dpdr /= ZERO .and. model_hse(i+1,idens) > low_density_cutoff) then
- max_hse_error = max(max_hse_error, abs(dpdr - rhog)/abs(dpdr))
- endif
- enddo
-
- print *, 'maximum HSE error = ', max_hse_error
- print *, ' '
-
- close (unit=50)
-
-end program init_1d
-
-
-
-
-
-
diff --git a/Util/initial_models/toy_atm/GNUmakefile b/Util/initial_models/toy_atm/GNUmakefile
deleted file mode 100644
index 985efb23e..000000000
--- a/Util/initial_models/toy_atm/GNUmakefile
+++ /dev/null
@@ -1,32 +0,0 @@
-# Makefile for the init_1d initial model generator
-
-NDEBUG :=
-MPI :=
-OMP :=
-
-COMP := gfortran
-
-MKVERBOSE := t
-
-
-# location of top-level MAESTRO directory
-MAESTRO_TOP_DIR = ../../..
-
-
-# EOS and network
-EOS_DIR := helmeos
-
-NETWORK_DIR := general_null
-GENERAL_NET_INPUTS := $(MAESTRO_TOP_DIR)/Microphysics/networks/$(NETWORK_DIR)/triple_alpha_plus_o.net
-
-
-
-# the local sources needed to build the initial model generator
-MODEL_SOURCES := init_1d_tanh2.f90
-
-
-include ../GInitModels.mak
-
-
-
-
diff --git a/Util/initial_models/toy_atm/GNUmakefile.convective_flame b/Util/initial_models/toy_atm/GNUmakefile.convective_flame
deleted file mode 100644
index 15f3b65c4..000000000
--- a/Util/initial_models/toy_atm/GNUmakefile.convective_flame
+++ /dev/null
@@ -1,30 +0,0 @@
-# Makefile for the init_1d initial model generator
-
-NDEBUG :=
-MPI :=
-OMP :=
-
-COMP := gfortran
-
-MKVERBOSE := t
-
-
-# location of top-level MAESTRO directory
-MAESTRO_TOP_DIR = ../../..
-
-
-# EOS and network
-EOS_DIR := gamma_law_general
-
-NETWORK_DIR := general_null
-GENERAL_NET_INPUTS := $(MAESTRO_TOP_DIR)/Microphysics/networks/$(NETWORK_DIR)/powerlaw.net
-
-# the local sources needed to build the initial model generator
-MODEL_SOURCES := init_1d_tanh2.f90
-
-
-include ../GInitModels.mak
-
-
-
-
diff --git a/Util/initial_models/toy_atm/GNUmakefile.flame_wave b/Util/initial_models/toy_atm/GNUmakefile.flame_wave
deleted file mode 100644
index 83f920474..000000000
--- a/Util/initial_models/toy_atm/GNUmakefile.flame_wave
+++ /dev/null
@@ -1,29 +0,0 @@
-# Makefile for the init_1d initial model generator
-
-NDEBUG :=
-MPI :=
-OMP :=
-
-COMP := gfortran
-
-MKVERBOSE := t
-
-
-# location of top-level MAESTRO directory
-MAESTRO_TOP_DIR = ../../..
-
-
-# EOS and network
-EOS_DIR := helmeos
-
-NETWORK_DIR := triple_alpha_plus_cago
-
-# the local sources needed to build the initial model generator
-MODEL_SOURCES := init_1d_tanh2.f90
-
-
-include ../GInitModels.mak
-
-
-
-
diff --git a/Util/initial_models/toy_atm/README b/Util/initial_models/toy_atm/README
deleted file mode 100644
index 00eecac04..000000000
--- a/Util/initial_models/toy_atm/README
+++ /dev/null
@@ -1,12 +0,0 @@
-This setup is used for toy_convect and for the XRB stuff. The init
-code takes an input file (one of the _param* files) to determine what
-is going on.
-
--- _params.xrb_mixed.hi_dens.tall.CNO
-
- This is the _params file that is used for the xrb_mixed stuff
-
--- _params.xrb_mixed.hi_dens.tall2.CNO
-
- This version differs from the above one with more buffer beneath
- the convective layer
\ No newline at end of file
diff --git a/Util/initial_models/toy_atm/_params.convective_flame b/Util/initial_models/toy_atm/_params.convective_flame
deleted file mode 100644
index 00f67b8d1..000000000
--- a/Util/initial_models/toy_atm/_params.convective_flame
+++ /dev/null
@@ -1,30 +0,0 @@
-¶ms
-
- model_prefix = "convective_flame_"
-
- nx = 192
-
- dens_base = 1.0
-
- T_star = 0.75
- T_base = 1.0
- T_lo = 1.e-3
-
- H_star = 1.0d0
- delta = 0.04
-
- fuel1_name = "fuel"
- fuel1_frac = 1.0d0
-
- ash1_name = "inert"
- ash1_frac = 1.0d0
-
- xmin = 0.0
- xmax = 7.68
-
- g_const = -4.2e7
-
- low_density_cutoff = 1.d-8
-
- index_base_from_temp = T
-/
diff --git a/Util/initial_models/toy_atm/_params.convective_flame_tall b/Util/initial_models/toy_atm/_params.convective_flame_tall
deleted file mode 100644
index 1e4033609..000000000
--- a/Util/initial_models/toy_atm/_params.convective_flame_tall
+++ /dev/null
@@ -1,30 +0,0 @@
-¶ms
-
- model_prefix = "convective_flame_"
-
- nx = 192
-
- dens_base = 1.0
-
- T_star = 0.75
- T_base = 1.0
- T_lo = 1.e-2
-
- H_star = 1.25d0
- delta = 0.04
-
- fuel1_name = "fuel"
- fuel1_frac = 1.0d0
-
- ash1_name = "inert"
- ash1_frac = 1.0d0
-
- xmin = 0.0
- xmax = 9.6
-
- g_const = -4.2e7
-
- low_density_cutoff = 1.d-8
-
- index_base_from_temp = T
-/
diff --git a/Util/initial_models/toy_atm/_params.xrb.flame_wave b/Util/initial_models/toy_atm/_params.xrb.flame_wave
deleted file mode 100644
index 8a467bd35..000000000
--- a/Util/initial_models/toy_atm/_params.xrb.flame_wave
+++ /dev/null
@@ -1,33 +0,0 @@
-¶ms
-
- model_prefix = "flame_wave"
-
- nx = 1536
-
- dens_base = 2e6
-
- T_star = 1.d8
- T_base = 3.81d8
- T_lo = 5.d7
-
- H_star = 1450.d0
- delta = 12.0
-
- fuel1_name = "helium-4"
- fuel1_frac = 1.0d0
-
- ash1_name = "iron-56"
- ash1_frac = 1.0d0
-
-
-
-
- xmin = 0.0
- xmax = 61440.0
-
- g_const = -2.0e14
-
- low_density_cutoff = 1.d-4
-
- index_base_from_temp = T
-/
diff --git a/Util/initial_models/toy_atm/_params.xrb.flame_wave.2H b/Util/initial_models/toy_atm/_params.xrb.flame_wave.2H
deleted file mode 100644
index db741edc5..000000000
--- a/Util/initial_models/toy_atm/_params.xrb.flame_wave.2H
+++ /dev/null
@@ -1,33 +0,0 @@
-¶ms
-
- model_prefix = "flame_wave"
-
- nx = 2048
-
- dens_base = 2e6
-
- T_star = 1.d8
- T_base = 3.81d8
- T_lo = 5.d7
-
- H_star = 5000.d0
- delta = 12.0
-
- fuel1_name = "helium-4"
- fuel1_frac = 1.0d0
-
- ash1_name = "iron-56"
- ash1_frac = 1.0d0
-
-
-
-
- xmin = 0.0
- xmax = 20480.0
-
- g_const = -2.0e14
-
- low_density_cutoff = 1.d-4
-
- index_base_from_temp = T
-/
diff --git a/Util/initial_models/toy_atm/_params.xrb.flame_wave.cool b/Util/initial_models/toy_atm/_params.xrb.flame_wave.cool
deleted file mode 100644
index 506775972..000000000
--- a/Util/initial_models/toy_atm/_params.xrb.flame_wave.cool
+++ /dev/null
@@ -1,33 +0,0 @@
-¶ms
-
- model_prefix = "flame_wave"
-
- nx = 1024
-
- dens_base = 2e6
-
- T_star = 5.d7
- T_base = 2.d8
- T_lo = 2.d7
-
- H_star = 5000.d0
- delta = 12.0
-
- fuel1_name = "helium-4"
- fuel1_frac = 1.0d0
-
- ash1_name = "iron-56"
- ash1_frac = 1.0d0
-
-
-
-
- xmin = 0.0
- xmax = 20480.0
-
- g_const = -2.0e14
-
- low_density_cutoff = 1.d-4
-
- index_base_from_temp = T
-/
diff --git a/Util/initial_models/toy_atm/_params.xrb_mixed.hi_dens.tall.CNO b/Util/initial_models/toy_atm/_params.xrb_mixed.hi_dens.tall.CNO
deleted file mode 100644
index b56de11c5..000000000
--- a/Util/initial_models/toy_atm/_params.xrb_mixed.hi_dens.tall.CNO
+++ /dev/null
@@ -1,51 +0,0 @@
-¶ms
-
- model_prefix = "toy_xrb.hi_dens"
-
- nx = 1536
-
- dens_base = 2e6
-
- T_star = 3.d8
- T_base = 9.5d8
- T_lo = 5.d7
-
- H_star = 1450.d0
- delta = 12.0
-
- fuel1_name = "hydrogen-1"
- fuel1_frac = 0.72d0
-
- fuel2_name = "helium-4"
- fuel2_frac = 0.24d0
-
- fuel3_name = "oxygen-14"
- fuel3_frac = 0.0004
-
- fuel4_name = "oxygen-15"
- fuel4_frac = 0.003
-
- fuel5_name = "magnesium-22"
- fuel5_frac = 0.001
-
- fuel6_name = "sulfur-30"
- fuel6_frac = 0.001
-
- fuel7_name = "nickel-56"
- fuel7_frac = 0.0346
-
- ash1_name = "nickel-56"
- ash1_frac = 1.0d0
-
-
-
-
- xmin = 0.0
- xmax = 4608.0
-
- g_const = -2.450d14
-
- low_density_cutoff = 1.d-4
-
- index_base_from_temp = T
-/
diff --git a/Util/initial_models/toy_atm/_params.xrb_mixed.hi_dens.tall2.CNO b/Util/initial_models/toy_atm/_params.xrb_mixed.hi_dens.tall2.CNO
deleted file mode 100644
index 3f727211a..000000000
--- a/Util/initial_models/toy_atm/_params.xrb_mixed.hi_dens.tall2.CNO
+++ /dev/null
@@ -1,51 +0,0 @@
-¶ms
-
- model_prefix = "toy_xrb.hi_dens_tall"
-
- nx = 960
-
- dens_base = 2e6
-
- T_star = 3.d8
- T_base = 9.5d8
- T_lo = 5.d7
-
- H_star = 2600.d0
- delta = 12.0
-
- fuel1_name = "hydrogen-1"
- fuel1_frac = 0.72d0
-
- fuel2_name = "helium-4"
- fuel2_frac = 0.24d0
-
- fuel3_name = "oxygen-14"
- fuel3_frac = 0.0004
-
- fuel4_name = "oxygen-15"
- fuel4_frac = 0.003
-
- fuel5_name = "magnesium-22"
- fuel5_frac = 0.001
-
- fuel6_name = "sulfur-30"
- fuel6_frac = 0.001
-
- fuel7_name = "nickel-56"
- fuel7_frac = 0.0346
-
- ash1_name = "nickel-56"
- ash1_frac = 1.0d0
-
-
-
-
- xmin = 0.0
- xmax = 5760.0
-
- g_const = -2.450d14
-
- low_density_cutoff = 1.d-4
-
- index_base_from_temp = T
-/
diff --git a/Util/initial_models/toy_atm/init_1d_tanh2.f90 b/Util/initial_models/toy_atm/init_1d_tanh2.f90
deleted file mode 100755
index d1d7e915b..000000000
--- a/Util/initial_models/toy_atm/init_1d_tanh2.f90
+++ /dev/null
@@ -1,857 +0,0 @@
-!! Create a 1-d hydrostatic, atmosphere with an isothermal region
-!! (T_star) representing the NS, a hyperbolic tangent rise to a
-!! peak temperature (T_base) representing the base of an accreted
-!! layer, an isoentropic profile down to a lower temperature (T_lo),
-!! and then isothermal. This can serve as an initial model for a
-!! nova or XRB.
-!!
-!! The temperature profile is:
-!!
-!! ^
-!! |
-!! T_base + /\
-!! | / \
-!! | / . \
-!! T_star +-----+ \
-!! | . . \
-!! | \
-!! | . . \
-!! T_lo + +-----------
-!! | . .
-!! +-----+---+---------------> r
-!! | \ /
-!! | delta
-!! |< H_star>|
-!!
-!! We take dens_base, the density at the base of the isentropic layer
-!! as input. The composition is "ash" in the lower isothermal region
-!! and "fuel" in the isentropic and upper isothermal regions. In the
-!! linear transition region, we linearly interpolate the composition.
-!!
-!! The fuel and ash compositions are specified by the fuel?_name,
-!! fuel?_frac and ash?_name, ash?_frac parameters (name of the species
-!! and mass fraction). Where ? = 1,2,3.
-!!
-!! The model is placed into HSE by the following differencing:
-!!
-!! (1/dr) [ _i -
_{i-1} ] = (1/2) [ _i + _{i-1} ] g
-!!
-!! This will be iterated over in tandem with the EOS call,
-!! P(i-1) = P_eos(rho(i-1), T(i-1), X(i-1)
-!!
-
-program init_1d_tanh
-
- use bl_types
- use bl_constants_module
- use bl_error_module
- use eos_module, only: eos_input_rt, eos, eos_init
- use eos_type_module, only: eos_t
- !use extern_probin_module, only: use_eos_coulomb
- use network, only : nspec, network_species_index, spec_names, network_init
- use fundamental_constants_module, only: Gconst
-
- implicit none
-
- integer :: i, n
-
- character(len=128) :: params_file
-
- real (kind=dp_t) :: T_base, T_star, T_lo
- real (kind=dp_t) :: dens_base
- real (kind=dp_t) :: H_star, delta
-
- real (kind=dp_t) :: slope_T, slope_xn(nspec)
-
- real (kind=dp_t) :: pres_base, entropy_base
- real (kind=dp_t), DIMENSION(nspec) :: xn_base, xn_star
-
- real (kind=dp_t), allocatable :: xzn_hse(:), xznl_hse(:), xznr_hse(:)
- real (kind=dp_t), allocatable :: model_hse(:,:)
-
- real :: A, B
-
- integer ::nx
-
- integer :: lun1, lun2
-
- ! define convenient indices for the scalars
- integer, parameter :: nvar = 3 + nspec
- integer, parameter :: idens = 1, &
- itemp = 2, &
- ipres = 3, &
- ispec = 4
-
- ! we'll get the composition from the network module
- ! we allow for 3 different species separately in the fuel and ash
- integer :: ifuel1, ifuel2, ifuel3, ifuel4, ifuel5, ifuel6, ifuel7
- integer :: iash1, iash2, iash3, iash4
- character (len=32) :: fuel1_name, fuel2_name, fuel3_name, fuel4_name
- character (len=32) :: fuel5_name, fuel6_name, fuel7_name
- character (len=32) :: ash1_name, ash2_name, ash3_name, ash4_name
- real (kind=dp_t) :: fuel1_frac, fuel2_frac, fuel3_frac, fuel4_frac
- real (kind=dp_t) :: fuel5_frac, fuel6_frac, fuel7_frac
- real (kind=dp_t) :: ash1_frac, ash2_frac, ash3_frac, ash4_frac
- logical :: species_defined
-
- real (kind=dp_t) :: xmin, xmax, dCoord
-
- real (kind=dp_t) :: dens_zone, temp_zone, pres_zone, entropy
- real (kind=dp_t) :: dpd, dpt, dsd, dst
-
- real (kind=dp_t) :: p_want, drho, dtemp, delx
-
- real (kind=dp_t) :: g_zone, g_const, M_enclosed
- logical :: do_invsq_grav
-
- real (kind=dp_t), parameter :: TOL = 1.e-10
-
- integer, parameter :: MAX_ITER = 250
-
- integer :: iter
-
- logical :: converged_hse, fluff
-
- real (kind=dp_t), dimension(nspec) :: xn
-
- real (kind=dp_t) :: low_density_cutoff, smallx
-
- integer :: index_base
-
- logical :: isentropic
-
- character (len=256) :: outfile, outfile2
- character (len=8) :: num
- character (len=32) :: deltastr, dxstr
- character (len=32) :: num_to_unitstring
-
- real (kind=dp_t) :: max_hse_error, dpdr, rhog
-
- character (len=128) :: model_prefix
-
- integer :: narg
-
- logical :: index_base_from_temp
-
- type (eos_t) :: eos_state
-
- namelist /params/ nx, dens_base, T_star, T_base, T_lo, H_star, delta, &
- fuel1_name, fuel2_name, fuel3_name, fuel4_name, &
- fuel5_name, fuel6_name, fuel7_name, &
- ash1_name, ash2_name, ash3_name, ash4_name, &
- fuel1_frac, fuel2_frac, fuel3_frac, fuel4_frac, &
- fuel5_frac, fuel6_frac, fuel7_frac, &
- ash1_frac, ash2_frac, ash3_frac, ash4_frac, &
- xmin, xmax, g_const, do_invsq_grav, M_enclosed, &
- low_density_cutoff, model_prefix, index_base_from_temp
-
- ! determine if we specified a runtime parameters file or use the default
- narg = command_argument_count()
-
- if (narg == 0) then
- params_file = "_params"
- else
- call get_command_argument(1, value = params_file)
- endif
-
-
-
-
- ! define defaults for the parameters for this model
- nx = 640
-
- dens_base = 2.d6
-
- T_star = 1.d8
- T_base = 5.d8
- T_lo = 5.e7
-
- H_star = 500.d0
- delta = 25.d0
-
- fuel1_name = "helium-4"
- fuel2_name = ""
- fuel3_name = ""
- fuel4_name = ""
- fuel5_name = ""
- fuel6_name = ""
- fuel7_name = ""
-
- ash1_name = "iron-56"
- ash2_name = ""
- ash3_name = ""
- ash4_name = ""
-
- fuel1_frac = ONE
- fuel2_frac = ZERO
- fuel3_frac = ZERO
- fuel4_frac = ZERO
- fuel5_frac = ZERO
- fuel6_frac = ZERO
- fuel7_frac = ZERO
-
- ash1_frac = ONE
- ash2_frac = ZERO
- ash3_frac = ZERO
- ash4_frac = ZERO
-
- xmin = 0.0_dp_t
- xmax = 2.e3_dp_t
-
- model_prefix = "model"
-
- index_base_from_temp = .false.
-
- ! if do_invsq_grav = .false. we will use g_const for the
- ! gravitational acceleration. Otherwise, we will compute gravity
- ! from M_enclosed and the distance from the origin
- M_enclosed = 2.d33
- g_const = -2.450d14
- do_invsq_grav = .false.
-
- low_density_cutoff = 1.d-4
-
- smallx = 1.d-10
-
-
- ! this comes in via extern_probin_module -- override the default
- ! here if we want
- !use_eos_coulomb = .true.
-
-
- ! initialize the EOS and network
- call eos_init()
- call network_init()
-
- ! check the namelist for any changed parameters
- open(unit=11, file=params_file, status="old", action="read")
- read(unit=11, nml=params)
- close(unit=11)
-
-
- ! get the species indices
- species_defined = .true.
- ifuel1 = network_species_index(trim(fuel1_name))
- if (ifuel1 < 0) species_defined = .false.
-
- if (fuel2_name /= "") then
- ifuel2 = network_species_index(trim(fuel2_name))
- if (ifuel2 < 0) species_defined = .false.
- endif
-
- if (fuel3_name /= "") then
- ifuel3 = network_species_index(trim(fuel3_name))
- if (ifuel3 < 0) species_defined = .false.
- endif
-
- if (fuel4_name /= "") then
- ifuel4 = network_species_index(trim(fuel4_name))
- if (ifuel4 < 0) species_defined = .false.
- endif
-
- if (fuel5_name /= "") then
- ifuel5 = network_species_index(trim(fuel5_name))
- if (ifuel5 < 0) species_defined = .false.
- endif
-
- if (fuel6_name /= "") then
- ifuel6 = network_species_index(trim(fuel6_name))
- if (ifuel6 < 0) species_defined = .false.
- endif
-
- if (fuel7_name /= "") then
- ifuel7 = network_species_index(trim(fuel7_name))
- if (ifuel7 < 0) species_defined = .false.
- endif
-
-
- iash1 = network_species_index(trim(ash1_name))
- if (iash1 < 0) species_defined = .false.
-
- if (ash2_name /= "") then
- iash2 = network_species_index(trim(ash2_name))
- if (iash2 < 0) species_defined = .false.
- endif
-
- if (ash3_name /= "") then
- iash3 = network_species_index(trim(ash3_name))
- if (iash3 < 0) species_defined = .false.
- endif
-
- if (ash4_name /= "") then
- iash4 = network_species_index(trim(ash4_name))
- if (iash4 < 0) species_defined = .false.
- endif
-
- if (.not. species_defined) then
- print *, ifuel1, ifuel2, ifuel3, ifuel4, ifuel5, ifuel6, ifuel7
- print *, iash1, iash2, iash3, iash4
- call bl_error("ERROR: species not defined")
- endif
-
-
-
- ! set the composition of the underlying star
- xn_star(:) = smallx
- xn_star(iash1) = ash1_frac
- if (ash2_name /= "") xn_star(iash2) = ash2_frac
- if (ash3_name /= "") xn_star(iash3) = ash3_frac
- if (ash4_name /= "") xn_star(iash4) = ash4_frac
-
- ! and the composition of the accreted layer
- xn_base(:) = smallx
- xn_base(ifuel1) = fuel1_frac
- if (fuel2_name /= "") xn_base(ifuel2) = fuel2_frac
- if (fuel3_name /= "") xn_base(ifuel3) = fuel3_frac
- if (fuel4_name /= "") xn_base(ifuel4) = fuel4_frac
- if (fuel5_name /= "") xn_base(ifuel5) = fuel5_frac
- if (fuel6_name /= "") xn_base(ifuel6) = fuel6_frac
- if (fuel7_name /= "") xn_base(ifuel7) = fuel7_frac
-
- ! check if they sum to 1
- if (abs(sum(xn_star) - ONE) > nspec*smallx) then
- call bl_error("ERROR: ash mass fractions don't sum to 1")
- endif
-
- if (abs(sum(xn_base) - ONE) > nspec*smallx) then
- call bl_error("ERROR: fuel mass fractions don't sum to 1")
- endif
-
-
-
-!-----------------------------------------------------------------------------
-! Create a 1-d uniform grid that is identical to the mesh that we are
-! mapping onto, and then we want to force it into HSE on that mesh.
-!-----------------------------------------------------------------------------
-
- ! allocate storage
- allocate(xzn_hse(nx))
- allocate(xznl_hse(nx))
- allocate(xznr_hse(nx))
- allocate(model_hse(nx,nvar))
-
-
- ! compute the coordinates of the new gridded function
- dCoord = (xmax - xmin) / dble(nx)
-
- do i = 1, nx
- xznl_hse(i) = xmin + (dble(i) - ONE)*dCoord
- xzn_hse(i) = xmin + (dble(i) - HALF)*dCoord
- xznr_hse(i) = xmin + (dble(i))*dCoord
- enddo
-
-
- ! find the index of the base height
- index_base = -1
- do i = 1, nx
- if (xzn_hse(i) >= xmin + H_star + delta) then
- index_base = i+1
- exit
- endif
- enddo
-
- if (index_base == -1) then
- print *, 'ERROR: base_height not found on grid'
- call bl_error('ERROR: invalid base_height')
- endif
-
-
-!-----------------------------------------------------------------------------
-! put the model onto our new uniform grid
-!-----------------------------------------------------------------------------
-
- fluff = .false.
-
- ! determine the conditions at the base
- eos_state%T = T_base
- eos_state%rho = dens_base
- eos_state%xn(:) = xn_base(:)
-
- call eos(eos_input_rt, eos_state)
-
- ! store the conditions at the base -- we'll use the entropy later
- ! to constrain the isentropic layer
- pres_base = eos_state%p
- entropy_base = eos_state%s
-
- print *, 'entropy_base = ', entropy_base
- print *, 'pres_base = ', pres_base
-
- ! set an initial temperature profile and composition
- do i = 1, nx
-
- !hyperbolic tangent transition:
- model_hse(i,ispec:ispec-1+nspec) = xn_star(1:nspec) + &
- HALF*(xn_base(1:nspec) - xn_star(1:nspec))* &
- (ONE + tanh((xzn_hse(i) - (xmin + H_star - delta) + delta)/delta))
-
- model_hse(i,itemp) = T_star + HALF*(T_base - T_star)* &
- (ONE + tanh((xzn_hse(i) - (xmin + H_star - delta) + delta)/delta))
-
-
- ! the density and pressure will be determined via HSE,
- ! for now, set them to the base conditions
- model_hse(i,idens) = dens_base
- model_hse(i,ipres) = pres_base
-
- enddo
-
-
- if (index_base_from_temp) then
- ! find the index of the base height -- look at the temperature for this
- index_base = -1
- do i = 1, nx
- !if (xzn_hse(i) >= xmin + H_star + delta) then
- if (model_hse(i,itemp) > 0.9995*T_base) then
- index_base = i+1
- exit
- endif
- enddo
-
- if (index_base == -1) then
- print *, 'ERROR: base_height not found on grid'
- call bl_error('ERROR: invalid base_height')
- endif
- endif
-
- print *, 'index_base = ', index_base
-
- ! make the base thermodynamics consistent for this base point -- that is
- ! what we will integrate from!
- eos_state%rho = model_hse(index_base,idens)
- eos_state%T = model_hse(index_base,itemp)
- eos_state%xn(:) = model_hse(index_base,ispec:ispec-1+nspec)
-
- call eos(eos_input_rt, eos_state)
-
- model_hse(index_base,ipres) = eos_state%p
-
-
-!-----------------------------------------------------------------------------
-! HSE + entropy solve
-!-----------------------------------------------------------------------------
-
-! the HSE state will be done putting creating an isentropic state until
-! the temperature goes below T_lo -- then we will do isothermal.
-! also, once the density goes below low_density_cutoff, we stop HSE
-
- isentropic = .true.
-
- !---------------------------------------------------------------------------
- ! integrate up
- !---------------------------------------------------------------------------
- do i = index_base+1, nx
-
- delx = xzn_hse(i) - xzn_hse(i-1)
-
- ! compute the gravitation acceleration at the lower edge
- if (do_invsq_grav) then
- g_zone = -Gconst*M_enclosed/xznl_hse(i)**2
- else
- g_zone = g_const
- endif
-
- ! we've already set initial guesses for density, temperature, and
- ! composition
- dens_zone = model_hse(i,idens)
- temp_zone = model_hse(i,itemp)
- xn(:) = model_hse(i,ispec:nvar)
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
- if (.not. fluff) then
-
- do iter = 1, MAX_ITER
-
- if (isentropic) then
-
- ! get the pressure we want from the HSE equation, just the
- ! zone below the current. Note, we are using an average of
- ! the density of the two zones as an approximation of the
- ! interface value -- this means that we need to iterate for
- ! find the density and pressure that are consistent
-
- ! furthermore, we need to get the entropy that we need,
- ! which will come from adjusting the temperature in
- ! addition to the density.
-
- ! HSE differencing
- p_want = model_hse(i-1,ipres) + &
- delx*0.5*(dens_zone + model_hse(i-1,idens))*g_zone
-
-
-
- ! now we have two functions to zero:
- ! A = p_want - p(rho,T)
- ! B = entropy_base - s(rho,T)
- ! We use a two dimensional Taylor expansion and find the deltas
- ! for both density and temperature
-
-
- ! now we know the pressure and the entropy that we want, so we
- ! need to find the temperature and density through a two
- ! dimensional root find
-
- ! (t, rho) -> (p, s)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpt = eos_state%dpdt
- dpd = eos_state%dpdr
- dst = eos_state%dsdt
- dsd = eos_state%dsdr
-
- A = p_want - pres_zone
- B = entropy_base - entropy
-
- dtemp = ((dsd/(dpd-0.5*delx*g_zone))*A - B)/ &
- (dsd*dpt/(dpd -0.5*delx*g_zone) - dst)
-
- drho = (A - dpt*dtemp)/(dpd - 0.5*delx*g_zone)
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
- temp_zone = max(0.9_dp_t*temp_zone, &
- min(temp_zone + dtemp, 1.1_dp_t*temp_zone))
-
-
- ! check if the density falls below our minimum cut-off --
- ! if so, floor it
- if (dens_zone < low_density_cutoff) then
-
- dens_zone = low_density_cutoff
- temp_zone = T_lo
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
- ! if (A < TOL .and. B < ETOL) then
- if (abs(drho) < TOL*dens_zone .and. &
- abs(dtemp) < TOL*temp_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- else
-
- ! do isothermal
- p_want = model_hse(i-1,ipres) + &
- delx*0.5*(dens_zone + model_hse(i-1,idens))*g_zone
-
- temp_zone = T_lo
-
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- drho = (p_want - pres_zone)/(dpd - 0.5*delx*g_zone)
-
- dens_zone = max(0.9*dens_zone, &
- min(dens_zone + drho, 1.1*dens_zone))
-
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- if (dens_zone < low_density_cutoff) then
-
- dens_zone = low_density_cutoff
- temp_zone = T_lo
- converged_hse = .TRUE.
- fluff = .TRUE.
- exit
-
- endif
-
- endif
-
- if (temp_zone < T_lo) then
- temp_zone = T_lo
- isentropic = .false.
- endif
-
- enddo
-
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate up'
- print *, dens_zone, temp_zone
- print *, p_want, entropy_base, entropy
- print *, drho, dtemp
- call bl_error('Error: HSE non-convergence')
-
- endif
-
- else
- dens_zone = low_density_cutoff
- temp_zone = T_lo
- endif
-
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- ! update the thermodynamics in this zone
- model_hse(i,idens) = dens_zone
- model_hse(i,itemp) = temp_zone
- model_hse(i,ipres) = pres_zone
-
-
- ! to make this process converge faster, set the density in the
- ! next zone to the density in this zone
- ! model_hse(i+1,idens) = dens_zone
-
- enddo
-
-
- !---------------------------------------------------------------------------
- ! integrate down -- using the temperature profile defined above
- !---------------------------------------------------------------------------
- do i = index_base-1, 1, -1
-
- delx = xzn_hse(i+1) - xzn_hse(i)
-
- ! compute the gravitation acceleration at the upper edge
- if (do_invsq_grav) then
- g_zone = -Gconst*M_enclosed/xznr_hse(i)**2
- else
- g_zone = g_const
- endif
-
- ! we already set the temperature and composition profiles
- temp_zone = model_hse(i,itemp)
- xn(:) = model_hse(i,ispec:nvar)
-
- ! use our previous initial guess for density
- dens_zone = model_hse(i+1,idens)
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
- do iter = 1, MAX_ITER
-
- ! get the pressure we want from the HSE equation, just the
- ! zone below the current. Note, we are using an average of
- ! the density of the two zones as an approximation of the
- ! interface value -- this means that we need to iterate for
- ! find the density and pressure that are consistent
-
- ! HSE differencing
- p_want = model_hse(i+1,ipres) - &
- delx*0.5*(dens_zone + model_hse(i+1,idens))*g_zone
-
-
- ! we will take the temperature already defined in model_hse
- ! so we only need to zero:
- ! A = p_want - p(rho)
-
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- A = p_want - pres_zone
-
- drho = A/(dpd + 0.5*delx*g_zone)
-
- dens_zone = max(0.9_dp_t*dens_zone, &
- min(dens_zone + drho, 1.1_dp_t*dens_zone))
-
-
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- exit
- endif
-
- enddo
-
- if (.NOT. converged_hse) then
-
- print *, 'Error zone', i, ' did not converge in init_1d'
- print *, 'integrate down'
- print *, dens_zone, temp_zone
- print *, p_want
- print *, drho
- call bl_error('Error: HSE non-convergence')
-
- endif
-
-
- ! call the EOS one more time for this zone and then go on to the next
- ! (t, rho) -> (p)
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- eos_state%xn(:) = xn(:)
-
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- ! update the thermodynamics in this zone
- model_hse(i,idens) = dens_zone
- model_hse(i,itemp) = temp_zone
- model_hse(i,ipres) = pres_zone
-
- enddo
-
- write(num,'(i8)') nx
-
- deltastr = num_to_unitstring(delta)
- dxstr = num_to_unitstring(dCoord)
-
- outfile = trim(model_prefix) // ".hse." // "tanh.delta_" // trim(adjustl(deltastr)) // ".dx_" // trim(adjustl(dxstr))
- outfile2 = trim(outfile) // ".extras"
-
- open (newunit=lun1, file=outfile, status="unknown")
- open (newunit=lun2, file=outfile2, status="unknown")
-
- write (lun1,1001) "# npts = ", nx
- write (lun1,1001) "# num of variables = ", nvar
- write (lun1,1002) "# density"
- write (lun1,1002) "# temperature"
- write (lun1,1002) "# pressure"
-
- do n = 1, nspec
- write (lun1, 1003) "# ", spec_names(n)
- enddo
-
-1000 format (1x, 100(g26.16, 1x))
-1001 format (a, i5)
-1002 format (a)
-1003 format (a,a)
-
- do i = 1, nx
-
- write (lun1,1000) xzn_hse(i), model_hse(i,idens), model_hse(i,itemp), model_hse(i,ipres), &
- (model_hse(i,ispec-1+n), n=1,nspec)
-
- enddo
-
- ! some metadata
- write (lun1, 1002) "# generated by toy_atm"
- write (lun1, 1003) "# inputs file", params_file
-
-
- write (lun2,1001), "# npts = ", nx
- write (lun2,1001), "# num of variables = ", 2
- write (lun2,1002), "# entropy"
- write (lun2,1002), "# c_s"
-
- ! test: bulk EOS call -- Maestro will do this once we are mapped, so make
- ! sure that we are in HSE with updated thermodynamics
- do i = 1, nx
- eos_state%rho = model_hse(i,idens)
- eos_state%T = model_hse(i,itemp)
- eos_state%xn(:) = model_hse(i,ispec:ispec-1+nspec)
-
- call eos(eos_input_rt, eos_state)
-
- model_hse(i,ipres) = eos_state%p
-
- write (lun2,1000), xzn_hse(i), eos_state%s, eos_state%cs
- enddo
-
- ! compute the maximum HSE error
- max_hse_error = -1.d30
-
- do i = 2, nx-1
-
- ! compute the gravitation acceleration at the lower edge
- if (do_invsq_grav) then
- g_zone = -Gconst*M_enclosed/xznl_hse(i)**2
- else
- g_zone = g_const
- endif
-
- dpdr = (model_hse(i,ipres) - model_hse(i-1,ipres))/delx
- rhog = HALF*(model_hse(i,idens) + model_hse(i-1,idens))*g_zone
-
- if (dpdr /= ZERO .and. model_hse(i+1,idens) > low_density_cutoff) then
- max_hse_error = max(max_hse_error, abs(dpdr - rhog)/abs(dpdr))
- endif
-
- enddo
-
- print *, 'maximum HSE error = ', max_hse_error
- print *, ' '
-
- close (unit=lun1)
- close (unit=lun2)
-
-end program init_1d_tanh
-
-
-function num_to_unitstring(value)
-
- use bl_types
- implicit none
-
- real (kind=dp_t) :: value
- character (len=32) :: num_to_unitstring
- character (len=16) :: temp
-
- if (value > 1.d5) then
-
- ! work in km
- write(temp,'(f6.3)') value/1.d5
- num_to_unitstring = trim(temp) // "km"
- else
-
- ! work in cm
- if (value > 1.d3) then
- write(temp,'(f8.3)') value
- num_to_unitstring = trim(temp) // "cm"
-
- else
- write(temp,'(f6.3)') value
- num_to_unitstring = trim(temp) // "cm"
- endif
-
- endif
-
- return
-end function num_to_unitstring
diff --git a/Util/initial_models/toy_atm/old_inputs/_params.xrb b/Util/initial_models/toy_atm/old_inputs/_params.xrb
deleted file mode 100644
index 3c41a6638..000000000
--- a/Util/initial_models/toy_atm/old_inputs/_params.xrb
+++ /dev/null
@@ -1,29 +0,0 @@
-¶ms
-
- model_prefix = "toy_xrb"
-
- nx = 1280
-
- dens_base = 2.d6
-
- T_star = 1.d8
- T_base = 5.d8
- T_lo = 5.d7
-
- H_star = 500.d0
- delta = 25.d0
-
- fuel1_name = "helium-4"
- ash1_name = "iron-56"
-
- fuel1_frac = 1.0d0
- ash1_frac = 1.0d0
-
- xmin = 0.0
- xmax = 2.d3
-
- g_const = -2.450d14
-
- low_density_cutoff = 1.d-4
-
-/
diff --git a/Util/initial_models/toy_atm/old_inputs/_params.xrb_mixed.hi_dens.tall.approx8 b/Util/initial_models/toy_atm/old_inputs/_params.xrb_mixed.hi_dens.tall.approx8
deleted file mode 100644
index 57d4af1ad..000000000
--- a/Util/initial_models/toy_atm/old_inputs/_params.xrb_mixed.hi_dens.tall.approx8
+++ /dev/null
@@ -1,51 +0,0 @@
-¶ms
-
- model_prefix = "toy_xrb.hi_dens"
-
- nx = 768
-
- dens_base = 2e6
-
- T_star = 3.d8
- T_base = 9.5d8
- T_lo = 5.d7
-
- H_star = 1450.d0
- delta = 12.0
-
- fuel1_name = "hydrogen-1"
- fuel1_frac = 0.72d0
-
- fuel2_name = "helium-4"
- fuel2_frac = 0.24d0
-
- fuel3_name = "nitrogen-14"
- fuel3_frac = 0.0004
-
- fuel4_name = "oxygen-16"
- fuel4_frac = 0.003
-
- fuel5_name = "neon-20"
- fuel5_frac = 0.001
-
- fuel6_name = "magnesium-24"
- fuel6_frac = 0.001
-
- fuel7_name = "nickel-56"
- fuel7_frac = 0.0346
-
- ash1_name = "nickel-56"
- ash1_frac = 1.0d0
-
-
-
-
- xmin = 0.0
- xmax = 4608.0
-
- g_const = -2.450d14
-
- low_density_cutoff = 1.d-4
-
- index_base_from_temp = T
-/
diff --git a/Util/initial_models/toy_atm/old_inputs/_params.xrb_mixed.hot.tall.CNO b/Util/initial_models/toy_atm/old_inputs/_params.xrb_mixed.hot.tall.CNO
deleted file mode 100644
index 115d2cb53..000000000
--- a/Util/initial_models/toy_atm/old_inputs/_params.xrb_mixed.hot.tall.CNO
+++ /dev/null
@@ -1,51 +0,0 @@
-¶ms
-
- model_prefix = "toy_xrb.hot"
-
- nx = 1536
-
- dens_base = 6.3e5
-
- T_star = 3.d8
- T_base = 8.8d8
- T_lo = 5.d7
-
- H_star = 1600.d0
- delta = 12.0
-
- fuel1_name = "hydrogen-1"
- fuel1_frac = 0.72d0
-
- fuel2_name = "helium-4"
- fuel2_frac = 0.24d0
-
- fuel3_name = "oxygen-14"
- fuel3_frac = 0.0004
-
- fuel4_name = "oxygen-15"
- fuel4_frac = 0.003
-
- fuel5_name = "magnesium-22"
- fuel5_frac = 0.001
-
- fuel6_name = "sulfur-30"
- fuel6_frac = 0.001
-
- fuel7_name = "nickel-56"
- fuel7_frac = 0.0346
-
- ash1_name = "nickel-56"
- ash1_frac = 1.0d0
-
-
-
-
- xmin = 0.0
- xmax = 4608.0
-
- g_const = -2.450d14
-
- low_density_cutoff = 1.d-4
-
- index_base_from_temp = T
-/
diff --git a/Util/initial_models/toy_atm/old_inputs/_params.xrb_mixed.hot2.tall.CNO b/Util/initial_models/toy_atm/old_inputs/_params.xrb_mixed.hot2.tall.CNO
deleted file mode 100644
index 154de05d6..000000000
--- a/Util/initial_models/toy_atm/old_inputs/_params.xrb_mixed.hot2.tall.CNO
+++ /dev/null
@@ -1,51 +0,0 @@
-¶ms
-
- model_prefix = "toy_xrb.hot2"
-
- nx = 512
-
- dens_base = 5.93e5
-
- T_star = 3.d8
- T_base = 9.5d8
- T_lo = 5.d7
-
- H_star = 950.d0
- delta = 12.0
-
- fuel1_name = "hydrogen-1"
- fuel1_frac = 0.72d0
-
- fuel2_name = "helium-4"
- fuel2_frac = 0.24d0
-
- fuel3_name = "oxygen-14"
- fuel3_frac = 0.0004
-
- fuel4_name = "oxygen-15"
- fuel4_frac = 0.003
-
- fuel5_name = "magnesium-22"
- fuel5_frac = 0.001
-
- fuel6_name = "sulfur-30"
- fuel6_frac = 0.001
-
- fuel7_name = "nickel-56"
- fuel7_frac = 0.0346
-
- ash1_name = "nickel-56"
- ash1_frac = 1.0d0
-
-
-
-
- xmin = 0.0
- xmax = 3072.0
-
- g_const = -2.450d14
-
- low_density_cutoff = 1.d-4
-
- index_base_from_temp = T
-/
diff --git a/Util/initial_models/toy_atm/old_inputs/_params.xrb_mixed.tall.CNO b/Util/initial_models/toy_atm/old_inputs/_params.xrb_mixed.tall.CNO
deleted file mode 100644
index 945a983a8..000000000
--- a/Util/initial_models/toy_atm/old_inputs/_params.xrb_mixed.tall.CNO
+++ /dev/null
@@ -1,51 +0,0 @@
-¶ms
-
- model_prefix = "toy_xrb"
-
- nx = 1024
-
- dens_base = 7.e5
-
- T_star = 3.d8
- T_base = 7.5d8
- T_lo = 5.d7
-
- H_star = 950.d0
- delta = 12.0
-
- fuel1_name = "hydrogen-1"
- fuel1_frac = 0.72d0
-
- fuel2_name = "helium-4"
- fuel2_frac = 0.24d0
-
- fuel3_name = "oxygen-14"
- fuel3_frac = 0.0004
-
- fuel4_name = "oxygen-15"
- fuel4_frac = 0.003
-
- fuel5_name = "magnesium-22"
- fuel5_frac = 0.001
-
- fuel6_name = "sulfur-30"
- fuel6_frac = 0.001
-
- fuel7_name = "nickel-56"
- fuel7_frac = 0.0346
-
- ash1_name = "nickel-56"
- ash1_frac = 1.0d0
-
-
-
-
- xmin = 0.0
- xmax = 3072.0
-
- g_const = -2.450d14
-
- low_density_cutoff = 1.d-4
-
- index_base_from_temp = T
-/
diff --git a/Util/initial_models/urca/spherical/GInitModels.mak b/Util/initial_models/urca/spherical/GInitModels.mak
deleted file mode 100644
index 7b3efdb60..000000000
--- a/Util/initial_models/urca/spherical/GInitModels.mak
+++ /dev/null
@@ -1,213 +0,0 @@
-# A set of useful macros for putting together one of the initial model
-# generator routines
-
-# include the main Makefile stuff
-include $(AMREX_HOME)/Tools/F_mk/GMakedefs.mak
-
-# default target (make just takes the one that appears first)
-ALL: init_1d.$(suf).exe
-
-
-#-----------------------------------------------------------------------------
-# core AMReX directories
-AMREX_CORE := Src/F_BaseLib
-
-
-#-----------------------------------------------------------------------------
-# default to $(MICROPHYSICS_HOME) for the EOS unless we are gamma_law_general
-ifeq ($(EOS_DIR), gamma_law_general)
- EOS_TOP_DIR := $(MAESTRO_HOME)/Microphysics/EOS
-else
- EOS_TOP_DIR := $(MICROPHYSICS_HOME)/EOS
-endif
-
-# we need all the thermodynamics
-FPP_DEFINES += -DEXTRA_THERMO
-
-ifeq ($(EOS_DIR), helmeos)
- EOS_DIR := helmholtz
- $(info EOS_DIR = helmeos is deprecated. Please use helmholtz instead)
-endif
-
-# the helmeholtz eos has an include file -- also add a target to link
-# the table into the problem directory.
-ifeq ($(findstring helmholtz, $(EOS_DIR)), helmholtz)
- EOS_PATH := $(EOS_TOP_DIR)/helmholtz
- ALL: table
-endif
-
-table:
- @if [ ! -f helm_table.dat ]; then echo ${bold}Linking helm_table.dat${normal}; ln -s $(EOS_PATH)/helm_table.dat .; fi
-
-# For the URCA network in Microphysics, link the rate tables
-ifeq ($(findstring URCA-simple, $(NETWORK_DIR)), URCA-simple)
- ALL: urcatables
-endif
-
-
-urcatables:
- @if [ ! -f 23Ne-23Na_betadecay.dat ]; then echo ${bold}Linking 23Ne-23Na_betadecay.dat${normal}; ln -s $(NETWORK_TOP_DIR)/$(NETWORK_DIR)/23Ne-23Na_betadecay.dat .; fi
- @if [ ! -f 23Na-23Ne_electroncapture.dat ]; then echo ${bold}Linking 23Na-23Ne_electroncapture.dat${normal}; ln -s $(NETWORK_TOP_DIR)/$(NETWORK_DIR)/23Na-23Ne_electroncapture.dat .; fi
-
-
-# All networks except general_null should pull in the Microphysics repository.
-ifneq ($(findstring general_null, $(NETWORK_DIR)), general_null)
- NETWORK_TOP_DIR := $(MICROPHYSICS_HOME)/networks
- include $(NETWORK_TOP_DIR)/GNetwork.mak
-else
- NETWORK_TOP_DIR := $(MAESTRO_TOP_DIR)/Microphysics/networks
- MICROPHYS_CORE += $(NETWORK_TOP_DIR) $(NETWORK_TOP_DIR)/$(NETWORK_DIR)
-endif
-
-ifdef SYSTEM_BLAS
- libraries += $(BLAS_LIBRARY)
-endif
-
-# are we using the stellar conductivity?
-ifeq ($(findstring stellar, $(CONDUCTIVITY_DIR)), stellar)
- CONDUCTIVITY_TOP_DIR := $(MICROPHYSICS_HOME)/conductivity
-endif
-
-ifndef CONDUCTIVITY_TOP_DIR
- CONDUCTIVITY_TOP_DIR := $(MAESTRO_TOP_DIR)/Microphysics/conductivity
-endif
-
-
-
-# add in the network, EOS, and conductivity
-MICROPHYS_CORE += $(MAESTRO_TOP_DIR)/Microphysics/EOS \
- $(MAESTRO_TOP_DIR)/Microphysics/networks \
- $(EOS_TOP_DIR) \
- $(EOS_TOP_DIR)/$(EOS_DIR) \
- $(MAESTRO_TOP_DIR)/Microphysics/conductivity \
- $(CONDUCTIVITY_TOP_DIR)/$(CONDUCTIVITY_DIR)
-
-# get any additional network dependencies
-include $(NETWORK_TOP_DIR)/$(strip $(NETWORK_DIR))/NETWORK_REQUIRES
-
-
-
-#-----------------------------------------------------------------------------
-# extra directory
-ifndef EXTRA_TOP_DIR
- EXTRA_TOP_DIR := $(MAESTRO_TOP_DIR)/
-endif
-
-EXTRAS := $(addprefix $(EXTRA_TOP_DIR)/, $(EXTRA_DIR))
-
-ifndef EXTRA_TOP_DIR2
- EXTRA_TOP_DIR2 := $(MAESTRO_TOP_DIR)/
-endif
-
-EXTRAS += $(addprefix $(EXTRA_TOP_DIR2)/, $(EXTRA_DIR2))
-
-ifdef NEED_VODE
- Fmdirs += Util/VODE Util/LINPACK Util/BLAS
-endif
-
-ifdef NEED_BLAS
- Fmdirs += Util/BLAS
-endif
-
-ifdef NEED_LINPACK
- UTIL_CORE += Util/LINPACK
-endif
-
-ifdef NEED_VBDF
- UTIL_CORE += Util/VBDF
-endif
-
-Fmdirs += Util/model_parser Util/simple_log
-
-
-# explicitly add in any source defined in the build directory
-f90sources += $(MODEL_SOURCES)
-
-
-#-----------------------------------------------------------------------------
-# core AMReX directories
-Fmpack := $(foreach dir, $(AMREX_CORE), $(AMREX_HOME)/$(dir)/GPackage.mak)
-Fmlocs := $(foreach dir, $(AMREX_CORE), $(AMREX_HOME)/$(dir))
-Fmincs :=
-
-# auxillary directories
-Fmpack += $(foreach dir, $(Fmdirs), $(MAESTRO_TOP_DIR)/$(dir)/GPackage.mak)
-Fmpack += $(foreach dir, $(MICROPHYS_CORE), $(dir)/GPackage.mak)
-
-Fmlocs += $(foreach dir, $(Fmdirs), $(MAESTRO_TOP_DIR)/$(dir))
-Fmlocs += $(foreach dir, $(MICROPHYS_CORE), $(dir))
-
-Fmincs += $(foreach dir, $(Fmincludes), $(MAESTRO_TOP_DIR)/$(dir))
-
-# Extras
-Fmpack += $(foreach dir, $(EXTRAS), $(dir)/GPackage.mak)
-Fmlocs += $(foreach dir, $(EXTRAS), $(dir))
-
-# include the necessary GPackage.mak files that define this setup
-include $(Fmpack)
-
-
-
-# we need a probin.f90, since the various microphysics routines can
-# have runtime parameters
-f90sources += probin.f90
-
-PROBIN_TEMPLATE := $(MAESTRO_TOP_DIR)/Util/parameters/dummy.probin.template
-PROBIN_PARAMETER_DIRS = $(MAESTRO_TOP_DIR)/Util/initial_models/
-EXTERN_PARAMETER_DIRS += $(MICROPHYS_CORE) $(NETWORK_TOP_DIR)
-
-
-PROBIN_PARAMETERS := $(shell $(AMREX_HOME)/Tools/F_scripts/findparams.py $(PROBIN_PARAMETER_DIRS))
-EXTERN_PARAMETERS := $(shell $(AMREX_HOME)/Tools/F_scripts/findparams.py $(EXTERN_PARAMETER_DIRS))
-
-probin.f90: $(PROBIN_PARAMETERS) $(EXTERN_PARAMETERS) $(PROBIN_TEMPLATE)
- @echo " "
- @echo "${bold}WRITING probin.f90${normal}"
- $(AMREX_HOME)/Tools/F_scripts/write_probin.py \
- -t $(PROBIN_TEMPLATE) -o probin.f90 -n probin \
- --pa "$(PROBIN_PARAMETERS)" --pb "$(EXTERN_PARAMETERS)"
- @echo " "
-
-
-
-
-
-# vpath defines the directories to search for the source files
-
-# VPATH_LOCATIONS to first search in the problem directory
-# Note: GMakerules.mak will include '.' at the start of the
-VPATH_LOCATIONS += $(Fmlocs)
-
-
-# we need the MAESTRO constants
-f90sources += constants_cgs.f90
-VPATH_LOCATIONS += $(MAESTRO_TOP_DIR)/Source
-
-
-# list of directories to put in the Fortran include path
-FINCLUDE_LOCATIONS += $(Fmincs)
-
-
-init_1d.$(suf).exe: $(objects)
- $(LINK.f90) -o init_1d.$(suf).exe $(objects) $(libraries)
- @echo SUCCESS
-
-
-# include the fParallel Makefile rules
-include $(AMREX_HOME)/Tools/F_mk/GMakerules.mak
-
-
-#-----------------------------------------------------------------------------
-# for debugging. To see the value of a Makefile variable,
-# e.g. Fmlocs, simply do "make print-Fmlocs". This will
-# print out the value.
-print-%: ; @echo $* is $($*)
-
-
-#-----------------------------------------------------------------------------
-# cleaning. Add more actions to 'clean' and 'realclean' to remove
-# probin.f90 and build_info.f90 -- this is where the '::' in make comes
-# in handy
-clean::
- $(RM) probin.f90
- $(RM) build_info.f90
diff --git a/Util/initial_models/urca/spherical/GNUmakefile b/Util/initial_models/urca/spherical/GNUmakefile
deleted file mode 100644
index 740bbbc69..000000000
--- a/Util/initial_models/urca/spherical/GNUmakefile
+++ /dev/null
@@ -1,25 +0,0 @@
-NDEBUG :=
-MPI :=
-OMP :=
-
-COMP := gfortran
-
-MKVERBOSE := t
-
-SDC :=
-
-# location of top-level MAESTRO directory
-MAESTRO_TOP_DIR = ../../../..
-
-# EOS and network
-EOS_TOP_DIR := $(MICROPHYSICS_HOME)/EOS
-EOS_DIR := helmholtz
-CONDUCTIVITY_DIR := stellar
-NETWORK_TOP_DIR := $(MICROPHYSICS_HOME)/networks
-NETWORK_DIR := ignition_reaclib/URCA-simple
-
-# the local sources needed to build the initial model generator
-MODEL_SOURCES := init_1d.f90
-MODEL_SOURCES += urca_composition.f90
-
-include GInitModels.mak
diff --git a/Util/initial_models/urca/spherical/init_1d.f90 b/Util/initial_models/urca/spherical/init_1d.f90
deleted file mode 100644
index c6df519f1..000000000
--- a/Util/initial_models/urca/spherical/init_1d.f90
+++ /dev/null
@@ -1,635 +0,0 @@
-!! generate an initial model for spherical geometry with a
-!! uniform composition. Here we take a base density and temperature
-!! and use HSE and constant entropy to generate the model.
-
-program init_1d
-
- use bl_types
- use bl_constants_module
- use bl_error_module
- use eos_module, only: eos, eos_input_rt, eos_init
- use eos_type_module, only: eos_t
- use extern_probin_module, only: use_eos_coulomb
- use network
- use actual_burner_module, only: actual_burner_init
- use fundamental_constants_module, only: Gconst
- use urca_composition_module
-
- implicit none
-
- integer :: i, j, n
-
- integer :: nx
-
- real (kind=dp_t) :: temp_base, dens_base
-
- real (kind=dp_t), allocatable :: xzn_hse(:), xznl(:), xznr(:)
- real (kind=dp_t), allocatable :: model_hse(:,:), M_enclosed(:)
-
- ! define convenient indices for the scalars
- integer, parameter :: nvar = 3 + nspec
- integer, parameter :: idens = 1, &
- itemp = 2, &
- ipres = 3, &
- ispec = 4
-
- real (kind=dp_t), parameter :: M_sun = 1.9891e33
-
- ! we'll get the composition indices from the network module
- integer, save :: ihe4, ic12, io16, ine20, ine23, ina23, img23
-
- integer :: narg
- character(len=128) :: params_file
-
- real (kind=dp_t), save :: xmin, xmax, dCoord
-
- real (kind=dp_t) :: dens_zone, temp_zone, pres_zone
- real (kind=dp_t) :: dpd, dpt, dsd, dst
-
- real (kind=dp_t) :: p_want, drho, dtemp, delx
- real (kind=dp_t), allocatable :: entropy_store(:), entropy_want(:)
-
- real (kind=dp_t) :: g_zone, try_tol
-
- real (kind=dp_t) :: TOL = 1.e-11
-
- integer :: MAX_ITER = 1000000
- integer :: MAX_RETRY = 50
-
- integer :: iter, iretry
-
- logical :: converged_hse, fluff
-
- real (kind=dp_t), save :: low_density_cutoff, smallx, dens_conv_zone, M_conv_zone
-
- logical :: test_hse_convergence = .true.
-
- real (kind=dp_t), save :: temp_before_fluff, temp_fluff
-
- character (len=128) :: fluff_type = "continuous"
-
- logical :: isentropic
-
- character (len=256) :: outfile, prefix
- character (len=8) num
-
- real (kind=dp_t) :: max_hse_error, dpdr, rhog
-
- real (kind=dp_t) :: dtol_fac = 0.000001_dp_t
-
- integer :: i_conv, i_fluff
-
- type (eos_t) :: eos_state
-
- namelist /params/ nx, dens_base, temp_base, &
- low_density_cutoff, dens_conv_zone, M_conv_zone, temp_fluff, &
- test_hse_convergence, TOL, MAX_ITER, dtol_fac, &
- xmin, xmax, &
- fluff_type, &
- c12_in, c12_out, o16_in, o16_out, &
- ne23_in, ne23_out, na23_in, na23_out, &
- urca_23_dens, urca_shell_type, shell_atan_kappa, &
- na_ne_23, prefix
-
-
- ! determine if we specified a runtime parameters file or use the default
- narg = command_argument_count()
-
- if (narg == 0) then
- params_file = "_params"
- else
- call get_command_argument(1, value = params_file)
- endif
-
-
- ! define the defaults parameters for this model
- nx = 1280
-
- smallx = 1.d-10
-
- xmin = 0_dp_t
- xmax = 5.d8
-
- dens_base = 2.6d9
- temp_base = 6.d8
-
- dens_conv_zone = -1.d0
- M_conv_zone = 2.0d0
-
-
- low_density_cutoff =1.d-4
- temp_fluff = 1.d7
-
- c12_in = 0.0_dp_t
- c12_out = 0.0_dp_t
- o16_in = 0.0_dp_t
- o16_out = 0.0_dp_t
- ne23_in = 0.0_dp_t
- ne23_out = 0.0_dp_t
- na23_in = 0.0_dp_t
- na23_out = 0.0_dp_t
-
- prefix = "spherical"
-
-
- ! check the namelist for any changed parameters
- open(unit=11, file=params_file, status="old", action="read")
- read(unit=11, nml=params)
- close(unit=11)
-
- ! Initialize the temperature interior to fluff
- ! (used to calculate fluff temperature for various values of fluff_type)
- temp_before_fluff = temp_fluff
-
- ! initialize the EOS and network
-
- ! use_eos_coulomb comes in from extern_probin_module -- override
- ! here if desired
- use_eos_coulomb = .true.
- call eos_init()
- call network_init()
- call actual_burner_init()
-
- ! Initialize the composition module
- call init_urca_composition()
-
-!-----------------------------------------------------------------------------
-! Create a 1-d uniform grid that is identical to the mesh that we are
-! mapping onto, and then we want to force it into HSE on that mesh.
-!-----------------------------------------------------------------------------
-
-! allocate storage
- allocate(xzn_hse(nx))
- allocate(xznl(nx))
- allocate(xznr(nx))
- allocate(model_hse(nx,nvar))
- allocate(M_enclosed(nx))
- allocate(entropy_want(nx))
- allocate(entropy_store(nx))
-
-! compute the coordinates of the new gridded function
- dCoord = (xmax - xmin) / dble(nx)
-
- do i = 1, nx
- xznl(i) = xmin + (dble(i) - 1.0_dp_t)*dCoord
- xznr(i) = xmin + (dble(i))*dCoord
- xzn_hse(i) = 0.5_dp_t*(xznl(i) + xznr(i))
- enddo
-
- fluff = .false.
-
- ! call the EOS one more time for this zone and then go on to the next
- eos_state%T = temp_base
- eos_state%rho = dens_base
- call set_urca_composition(eos_state)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- ! make the initial guess be completely uniform
- model_hse(:,idens) = eos_state%rho
- model_hse(:,itemp) = eos_state%T
- model_hse(:,ipres) = eos_state%p
-
- do i = 1, nspec
- model_hse(:,ispec-1+i) = eos_state%xn(i)
- enddo
-
- entropy_want(:) = eos_state%s
-
-
- ! keep track of the mass enclosed below the current zone
- M_enclosed(1) = FOUR3RD*M_PI*(xznr(1)**3 - xznl(1)**3)*model_hse(1,idens)
-
-
-!-----------------------------------------------------------------------------
-! HSE + entropy solve
-!-----------------------------------------------------------------------------
-
- isentropic = .true.
-
- do i = 2, nx
-
- delx = xzn_hse(i) - xzn_hse(i-1)
-
- ! as the initial guess for the temperature and density, use the previous
- ! zone
- dens_zone = model_hse(i-1,idens)
- temp_zone = model_hse(i-1,itemp)
- eos_state % rho = dens_zone
- eos_state % T = temp_zone
- call set_urca_composition(eos_state)
- eos_state % p = model_hse(i-1, ipres)
- eos_state % s = entropy_want(i)
-
- g_zone = -Gconst*M_enclosed(i-1)/(xznl(i)*xznl(i))
-
-
- !-----------------------------------------------------------------------
- ! iteration loop
- !-----------------------------------------------------------------------
-
- ! start off the Newton loop by saying that the zone has not converged
- converged_hse = .FALSE.
-
-
- if (.not. fluff) then
-
- do iretry = 1, MAX_RETRY
- try_tol = TOL*(1.1d0**(iretry-1))
- do iter = 1, MAX_ITER
- call iter_dens_temp(dens_zone, temp_zone, eos_state, &
- g_zone, delx, tol, dtol_fac, dens_conv_zone, low_density_cutoff, temp_fluff, &
- isentropic, test_hse_convergence, converged_hse, fluff, &
- fluff_type, &
- i_fluff, i_conv, i)
- if (converged_hse) then
- exit
- end if
- enddo
- if (converged_hse) then
- exit
- else if (iretry == MAX_RETRY) then
- call bl_error("ERROR: HSE non-convergence with retries!")
- end if
- enddo
-
- if (temp_zone < temp_fluff) then
- if (fluff_type .eq. "constant") then
- call get_fluff_temperature(temp_zone, temp_fluff, temp_before_fluff, fluff_type)
- endif
- isentropic = .false.
- endif
-
- else
- dens_zone = low_density_cutoff
- call get_fluff_temperature(temp_zone, temp_fluff, temp_before_fluff, fluff_type)
- endif
-
-
- ! call the EOS one more time for this zone and then go on to the next
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- call set_urca_composition(eos_state)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- ! update the thermodynamics in this zone
- model_hse(i,idens) = dens_zone
- model_hse(i,itemp) = temp_zone
- model_hse(i,ipres) = pres_zone
- do j = 1, nspec
- model_hse(i,ispec-1+j) = eos_state%xn(j)
- enddo
-
- print *, i, dens_zone, temp_zone
-
- M_enclosed(i) = M_enclosed(i-1) + &
- FOUR3RD*M_PI*(xznr(i) - xznl(i))* &
- (xznr(i)**2 +xznl(i)*xznr(i) + xznl(i)**2)*model_hse(i,idens)
-
- if (M_enclosed(i) > M_conv_zone*M_sun .and. isentropic) then
-
- i_conv = i
- isentropic = .false.
-
- endif
-
- enddo
-
-
- print *, 'mass = ', M_enclosed(nx)/M_sun
-
- write(num,'(i8)') nx
- outfile = trim(prefix) // ".hse." // trim(adjustl(num))
-
-
-
- open (unit=50, file=outfile, status="unknown")
-
- write (50,1001) "# npts = ", nx
- write (50,1001) "# num of variables = ", nvar
- write (50,1002) "# density"
- write (50,1002) "# temperature"
- write (50,1002) "# pressure"
-
- do n = 1, nspec
- write (50,1003) "# ", spec_names(n)
- enddo
-
-1000 format (1x, 12(g26.16, 1x))
-1001 format(a, i5)
-1002 format(a)
-1003 format(a,a)
-
- do i = 1, nx
-
- write (50,1000) xzn_hse(i), model_hse(i,idens), model_hse(i,itemp), model_hse(i,ipres), &
- (model_hse(i,ispec-1+n), n=1,nspec)
-
- enddo
-
-
- ! compute the maximum HSE error
- max_hse_error = -1.d30
-
- do i = 2, nx-1
- g_zone = -Gconst*M_enclosed(i-1)/xznr(i-1)**2
- dpdr = (model_hse(i,ipres) - model_hse(i-1,ipres))/delx
- rhog = HALF*(model_hse(i,idens) + model_hse(i-1,idens))*g_zone
-
- if (dpdr /= ZERO .and. model_hse(i,idens) > low_density_cutoff) then
- max_hse_error = max(max_hse_error, abs(dpdr - rhog)/abs(dpdr))
- endif
-
- if (dpdr /= 0) then
- print *, i, real(model_hse(i,idens)), real(model_hse(i,itemp)), real(dpdr), real(rhog), abs(dpdr - rhog)/abs(dpdr)
- endif
- enddo
-
- print *, 'maximum HSE error = ', max_hse_error
- print *, ' '
-
-
- print *, 'total mass (Msun) = ', M_enclosed(i_fluff)/M_sun
- print *, 'convective zone mass (Msun) = ', M_enclosed(i_conv)/M_sun
- print *, 'convective zone boundary density (g/cm^3) = ', model_hse(i_conv, idens)
- print *, 'convective zone boundary radius (cm) = ', xzn_hse(i_conv)
- print *, 'convective zone boundary index = ', i_conv
-
-
- close (unit=50)
-
-end program init_1d
-
-
-subroutine get_fluff_temperature(temp, temp_fluff, temp_previous, fluff_type)
-
- ! There are 2 kinds of fluff temperature handling:
- ! 1) fluff_type = "constant" : fluff is at the temperature temp_fluff in the inputs
- ! 2) fluff_type = "continuous" : fluff is at the same temperature as the material
- ! immediately interior to the fluff.
-
- use bl_types, only: dp_t
- use bl_error_module
-
- implicit none
-
- real (kind=dp_t), intent(out) :: temp
- real (kind=dp_t), intent(in) :: temp_fluff, temp_previous
- character (len=128), intent(in) :: fluff_type
-
- if (fluff_type .eq. "constant") then
- temp = temp_fluff
- else if (fluff_type .eq. "continuous") then
- temp = temp_previous
- else
- call bl_error("ERROR: invalid fluff_type")
- end if
-
-end subroutine get_fluff_temperature
-
-
-subroutine iter_dens_temp(dens_zone, temp_zone, eos_state_inwards, &
- g_zone, delx, tol, dtol_fac, dens_conv_zone, low_density_cutoff, temp_fluff, &
- isentropic, test_hse_convergence, converged_hse, fluff, &
- fluff_type, &
- i_fluff, i_conv, izone)
-
- ! Do one rho, T iteration
- use bl_constants_module
- use bl_types, only: dp_t
- use bl_error_module
- use eos_type_module, only: eos_t
- use eos_module, only: eos, eos_input_rt
- use urca_composition_module
-
- implicit none
-
- real (kind=dp_t), intent(inout) :: dens_zone, temp_zone
- type (eos_t), intent(in) :: eos_state_inwards
- real (kind=dp_t), intent(in) :: g_zone, dens_conv_zone, delx, tol, dtol_fac, low_density_cutoff, temp_fluff
- logical, intent(inout) :: isentropic
- logical, intent(in) :: test_hse_convergence
- logical, intent(out) :: converged_hse, fluff
- integer, intent(out) :: i_fluff, i_conv
- integer, intent(in) :: izone
- character (len=128), intent(in) :: fluff_type
-
- type (eos_t) :: eos_state
- real (kind=dp_t) :: pres_zone, entropy
- real (kind=dp_t) :: A, B, dAdT, dAdrho, dBdT, dBdrho
- real (kind=dp_t) :: dpd, dpt, dsd, dst
- real (kind=dp_t) :: p_want, drho, dtemp
- real (kind=dp_t) :: dpdr, rhog, temp_before_fluff
-
- if (isentropic) then
-
- p_want = eos_state_inwards % p + &
- delx*0.5_dp_t*(dens_zone + eos_state_inwards % rho)*g_zone
-
- ! now we have two functions to zero:
- ! A = p_want - p(rho,T)
- ! B = entropy_want - s(rho,T)
- ! We use a two dimensional Taylor expansion and find the deltas
- ! for both density and temperature
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- call set_urca_composition(eos_state)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpt = eos_state%dpdt
- dpd = eos_state%dpdr
- dst = eos_state%dsdt
- dsd = eos_state%dsdr
-
- A = p_want - pres_zone
- B = eos_state_inwards % s - entropy
-
- dAdT = -dpt
- dAdrho = 0.5d0*delx*g_zone - dpd
- dBdT = -dst
- dBdrho = -dsd
-
- dtemp = (B - (dBdrho/dAdrho)*A)/ &
- ((dBdrho/dAdrho)*dAdT - dBdT)
-
- drho = -(A + dAdT*dtemp)/dAdrho
-
- dens_zone = max((ONE-dtol_fac)*dens_zone, &
- min(dens_zone + drho, (ONE+dtol_fac)*dens_zone))
-
- temp_zone = max((ONE-dtol_fac)*temp_zone, &
- min(temp_zone + dtemp, (ONE+dtol_fac)*temp_zone))
-
-
- ! check if the density falls below our minimum cut-off --
- ! if so, floor it
- if (dens_zone < low_density_cutoff) then
-
- i_fluff = izone
-
- dens_zone = low_density_cutoff
-
- temp_before_fluff = eos_state_inwards % T
-
- call get_fluff_temperature(temp_zone, temp_fluff, temp_before_fluff, fluff_type)
-
- converged_hse = .TRUE.
- fluff = .TRUE.
- return
-
- endif
-
- if (dens_zone < dens_conv_zone .and. isentropic) then
-
- i_conv = izone
- isentropic = .false.
-
- endif
-
- if (test_hse_convergence) then
-
- ! Check to see if HSE is satisfied to relative tolerance TOL
-
- ! Call EOS again using the new values of dens_zone and temp_zone
- ! to get pres_zone ...
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- call set_urca_composition(eos_state)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- ! Compute dpdr
- dpdr = (pres_zone - eos_state_inwards % p)/delx
-
- ! Compute rho*g
- rhog = HALF*(dens_zone + eos_state_inwards % rho)*g_zone
-
- if (abs(dpdr - rhog) < TOL*abs(dpdr)) then
- converged_hse = .TRUE.
- return
- endif
-
- else
-
- ! Check to see if drho and dtemp are under the relative tolerance TOL
- if (abs(drho) < TOL*dens_zone .and. abs(dtemp) < TOL*temp_zone) then
- converged_hse = .TRUE.
- return
- endif
-
- endif
-
- else
-
- ! do isothermal
- p_want = eos_state_inwards % p + &
- delx*0.5*(dens_zone + eos_state_inwards % rho)*g_zone
-
- temp_zone = eos_state_inwards % T
-
-
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- call set_urca_composition(eos_state)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- entropy = eos_state%s
- pres_zone = eos_state%p
-
- dpd = eos_state%dpdr
-
- drho = (p_want - pres_zone)/(dpd - 0.5*delx*g_zone)
-
- dens_zone = max(0.9*dens_zone, &
- min(dens_zone + drho, 1.1*dens_zone))
-
- if (dens_zone < low_density_cutoff) then
-
- i_fluff = izone
-
- dens_zone = low_density_cutoff
-
- temp_before_fluff = eos_state_inwards % T
-
- call get_fluff_temperature(temp_zone, temp_fluff, temp_before_fluff, fluff_type)
-
- converged_hse = .TRUE.
- fluff = .TRUE.
- return
-
- endif
-
- if (test_hse_convergence) then
-
- ! Check to see if HSE is satisfied to relative tolerance TOL
-
- ! Call EOS again using the new values of dens_zone and temp_zone
- ! to get pres_zone ...
- eos_state%T = temp_zone
- eos_state%rho = dens_zone
- call set_urca_composition(eos_state)
-
- ! (t, rho) -> (p, s)
- call eos(eos_input_rt, eos_state)
-
- pres_zone = eos_state%p
-
- ! Compute dpdr
- dpdr = (pres_zone - eos_state_inwards % p)/delx
-
- ! Compute rho*g
- rhog = HALF*(dens_zone + eos_state_inwards % rho)*g_zone
-
- if (abs(dpdr - rhog) < TOL*abs(dpdr)) then
- converged_hse = .TRUE.
- return
- endif
-
- else
-
- ! Check to see if drho is under the relative tolerance TOL
- if (abs(drho) < TOL*dens_zone) then
- converged_hse = .TRUE.
- return
- endif
-
- endif
-
- endif
-
- ! if (.NOT. converged_hse) then
- ! print *, 'Error zone did not converge in init_1d'
- ! print *, 'integrate up'
- ! print *, 'trial density (dens_zone): ', dens_zone
- ! print *, 'trial temperature (temp_zone): ', temp_zone
- ! print *, 'current pressure (pres_zone): ', pres_zone
- ! print *, 'desired pressure (p_want): ', p_want
- ! print *, 'desired pressure rel tolerance: ', abs(pres_zone-p_want)/pres_zone
- ! print *, 'delta density (drho): ', drho
- ! print *, 'delta temperature (dtemp): ', dtemp
- ! print *, 'pressure gradient (dpdr): ', dpdr
- ! print *, 'density * gravitational accel. (rhog): ', rhog
- ! print *, 'difference... abs(dpdr-rhog): ', abs(dpdr-rhog)
- ! print *, 'target... TOL*abs(dpdr): ', TOL*abs(dpdr)
- ! call bl_error('Error: HSE non-convergence')
- ! endif
-
-end subroutine iter_dens_temp
diff --git a/Util/initial_models/urca/spherical/inputs_urca_atan b/Util/initial_models/urca/spherical/inputs_urca_atan
deleted file mode 100644
index 0425b040f..000000000
--- a/Util/initial_models/urca/spherical/inputs_urca_atan
+++ /dev/null
@@ -1,50 +0,0 @@
-&PROBIN
-
- use_eos_coulomb = T
-
-/
-
-
-¶ms
-
- nx = 2560
- dens_base = 4.5e9
- temp_base = 3.0e8
-
- dens_conv_zone = -1.0
- M_conv_zone = 0.5
-
- low_density_cutoff = 1.e-3
- temp_fluff = 1.e7
-
- xmin = 0.0
- xmax = 5.12e8
-
- ! in/out relative to urca threshold density
- ! which atm assumes ye = 0.5 throughout
- ! O16 0.6 in - 2.5e-4, 0.5 out - 1e-4
- ! C12 0.4 in - 2.5e-4, 0.5 out - 1e-4
- ! Ne23 5e-4 in, 0 out
- ! Na23 0 in, 2e-4 out
-
- c12_in = 0.39975e0
- c12_out = 0.49990e0
- o16_in = 0.59975e0
- o16_out = 0.49990e0
- ne23_in = 5.00000e-4
- ne23_out = 0.00000e0
- na23_in = 0.00000e0
- na23_out = 2.00000e-4
-
- ! Following 0.5 Ye and Log10(rho*Ye)=8.92 from Toki+ 2013:
- urca_23_dens = 1.66e9
-
- ! Parameters controlling the species gradients near the urca shell
- urca_shell_type = "atan"
- shell_atan_kappa = 1.0d-9
-
- prefix = "WD_urca_nuc_M-0.5_hot"
-
-/
-
-
diff --git a/Util/initial_models/urca/spherical/inputs_urca_jump b/Util/initial_models/urca/spherical/inputs_urca_jump
deleted file mode 100644
index 7e7f846d9..000000000
--- a/Util/initial_models/urca/spherical/inputs_urca_jump
+++ /dev/null
@@ -1,50 +0,0 @@
-&PROBIN
-
- use_eos_coulomb = T
-
-/
-
-
-¶ms
-
- nx = 2560
- dens_base = 4.5e9
- temp_base = 3.0e8
-
- dens_conv_zone = -1.0
- M_conv_zone = 0.5
-
- low_density_cutoff = 1.e-3
- temp_fluff = 1.e7
-
- xmin = 0.0
- xmax = 5.12e8
-
- ! in/out relative to urca threshold density
- ! which atm assumes ye = 0.5 throughout
- ! O16 0.6 in - 2.5e-4, 0.5 out - 1e-4
- ! C12 0.4 in - 2.5e-4, 0.5 out - 1e-4
- ! Ne23 5e-4 in, 0 out
- ! Na23 0 in, 2e-4 out
-
- c12_in = 0.39975e0
- c12_out = 0.49990e0
- o16_in = 0.59975e0
- o16_out = 0.49990e0
- ne23_in = 5.00000e-4
- ne23_out = 0.00000e0
- na23_in = 0.00000e0
- na23_out = 2.00000e-4
-
- ! Following 0.5 Ye and Log10(rho*Ye)=8.92 from Toki+ 2013:
- urca_23_dens = 1.66e9
-
- ! Parameters controlling the species gradients near the urca shell
- urca_shell_type = "jump" ! Sharp wall. Can also choose "atan"
- shell_atan_kappa = 0.0d0 ! Use with urca_shell_type = "atan"
-
- prefix = "WD_urca_nuc_M-0.5_hot"
-
-/
-
-
diff --git a/Util/initial_models/urca/spherical/urca_composition.f90 b/Util/initial_models/urca/spherical/urca_composition.f90
deleted file mode 100644
index 0e7f4383c..000000000
--- a/Util/initial_models/urca/spherical/urca_composition.f90
+++ /dev/null
@@ -1,314 +0,0 @@
-module urca_composition_module
-
- use bl_types
- use network, only: nspec
-
- implicit none
-
- private xn_in, xn_out
- public set_urca_composition, c12_in, c12_out, o16_in, o16_out, &
- ne23_in, ne23_out, na23_in, na23_out, urca_23_dens, &
- urca_shell_type, shell_atan_kappa, na_ne_23
-
- real (kind=dp_t) :: c12_in = 0.0d0, c12_out = 0.0d0, &
- o16_in = 0.0d0, o16_out = 0.0d0, &
- ne23_in = 0.0d0, ne23_out = 0.0d0, &
- na23_in = 0.0d0, na23_out = 0.0d0, &
- urca_23_dens = 0.0d0, shell_atan_kappa = 0.0d0, &
- na_ne_23 = 0.0d0
-
- real (kind=dp_t) :: xn_in(nspec), xn_out(nspec)
-
- character (len=128) :: urca_shell_type = ""
-
-contains
-
- subroutine init_urca_composition()
- use bl_error_module
- use network, only: network_species_index
-
- implicit none
-
- integer :: ihe4, ic12, io16, ine20, ine23, ina23, img23
-
- ! get the species indices
- ihe4 = network_species_index("helium-4")
- ic12 = network_species_index("carbon-12")
- io16 = network_species_index("oxygen-16")
- ine20 = network_species_index("neon-20")
- ine23 = network_species_index("neon-23")
- ina23 = network_species_index("sodium-23")
- img23 = network_species_index("magnesium-23")
-
- ! check the required species exist
- if (ihe4 < 0 .or. &
- ic12 < 0 .or. io16 < 0 .or. ine20 < 0 .or. &
- ine23 < 0 .or. ina23 < 0 .or. img23 < 0) then
- call bl_error("ERROR: species not defined")
- endif
-
- ! check the species mass fractions
- if (c12_in < 0.0_dp_t .or. c12_in > 1.0_dp_t) then
- call bl_error("ERROR: c12_in must be between 0 and 1")
- endif
- if (c12_out < 0.0_dp_t .or. c12_out > 1.0_dp_t) then
- call bl_error("ERROR: c12_out must be between 0 and 1")
- endif
- if (o16_in < 0.0_dp_t .or. o16_in > 1.0_dp_t) then
- call bl_error("ERROR: o16_in must be between 0 and 1")
- endif
- if (o16_out < 0.0_dp_t .or. o16_out > 1.0_dp_t) then
- call bl_error("ERROR: o16_out must be between 0 and 1")
- endif
- if (ne23_in < 0.0_dp_t .or. ne23_in > 1.0_dp_t) then
- call bl_error("ERROR: ne23_in must be between 0 and 1")
- endif
- if (ne23_out < 0.0_dp_t .or. ne23_out > 1.0_dp_t) then
- call bl_error("ERROR: ne23_out must be between 0 and 1")
- endif
- if (na23_in < 0.0_dp_t .or. na23_in > 1.0_dp_t) then
- call bl_error("ERROR: na23_in must be between 0 and 1")
- endif
- if (na23_out < 0.0_dp_t .or. na23_out > 1.0_dp_t) then
- call bl_error("ERROR: na23_out must be between 0 and 1")
- endif
-
- ! Set the composition within and outside the urca shell
- ! If a non-jump profile is used at the shell, these are asymptotic
- xn_in(:) = 0.0d0
- xn_in(ic12) = c12_in
- xn_in(io16) = o16_in
- xn_in(ine23) = ne23_in
- xn_in(ina23) = na23_in
-
- xn_out(:) = 0.0d0
- xn_out(ic12) = c12_out
- xn_out(io16) = o16_out
- xn_out(ine23) = ne23_out
- xn_out(ina23) = na23_out
- end subroutine init_urca_composition
-
-
- subroutine set_urca_composition(eos_state)
-
- ! Construct composition profiles given a choice of
- ! the type of profile denoted by urca_shell_type.
- ! "jump": impose sharp species discontinuity
- ! "atan": use arctan to smooth composition profile
- use bl_error_module
- use bl_types, only: dp_t
- use network
- use eos_type_module, only: eos_t
-
- type (eos_t), intent(inout) :: eos_state
-
- if (urca_shell_type .eq. "jump") then
- call composition_jump(eos_state, urca_23_dens, xn_in, xn_out)
- else if (urca_shell_type .eq. "atan") then
- call composition_atan(eos_state, urca_23_dens, xn_in, xn_out, shell_atan_kappa)
- else if (urca_shell_type .eq. "equilibrium") then
- call composition_equilibrium(eos_state)
- else
- call bl_error("ERROR: invalid urca_shell_type")
- end if
-
- ! Floor species so abundances below 1E-30 are 0.0d0
- call floor_species(eos_state)
-
- ! Renormalize species
- call renormalize_species(eos_state)
-
- end subroutine set_urca_composition
-
-
- subroutine floor_species(eos_state)
-
- ! Species mass fractions below 1E-30 should just be 0.0
- ! This prevents getting abundances of ~1E-100. Note that
- ! the initial model writing omits the "E" in the exponent
- ! if the exponent requires 3 digits.
- use bl_constants_module, only: ZERO
- use bl_types, only: dp_t
- use eos_type_module, only: eos_t
- use network, only: nspec
-
- type (eos_t), intent(inout) :: eos_state
- real (kind=dp_t), parameter :: mass_fraction_floor = 1.0d-30
- integer :: i
-
- do i = 1, nspec
- if (eos_state % xn(i) < mass_fraction_floor) then
- eos_state % xn(i) = ZERO
- end if
- end do
-
- end subroutine floor_species
-
-
- subroutine renormalize_species(eos_state)
-
- ! Renormalize the mass fractions so they sum to 1
- use bl_types, only: dp_t
- use eos_type_module, only: eos_t
-
- type (eos_t), intent(inout) :: eos_state
- real (kind=dp_t) :: sumx
-
- sumx = sum(eos_state % xn)
- eos_state % xn(:) = eos_state % xn(:)/sumx
-
- end subroutine renormalize_species
-
-
- subroutine composition_jump(eos_state, shell_rho, xn_left, xn_right)
- use bl_types
- use bl_constants_module, only: HALF
- use network
- use eos_type_module, only: eos_t
-
- type (eos_t), intent(inout) :: eos_state
- real (kind=dp_t), intent( in) :: shell_rho
- real (kind=dp_t), intent( in), dimension(nspec) :: xn_left, xn_right
-
- if (eos_state % rho < shell_rho) then
- eos_state % xn = xn_right
- else if (eos_state % rho > shell_rho) then
- eos_state % xn = xn_left
- else
- eos_state % xn = HALF*(xn_right + xn_left)
- end if
- end subroutine composition_jump
-
-
- subroutine composition_atan(eos_state, shell_rho, xn_left, xn_right, &
- shell_atan_kappa)
- use bl_types
- use bl_constants_module, only: TWO, HALF, M_PI
- use network
- use eos_type_module, only: eos_t
-
- type (eos_t), intent(inout) :: eos_state
- real (kind=dp_t), intent(in) :: shell_rho, shell_atan_kappa
- real (kind=dp_t), intent(in), dimension(nspec) :: xn_left, xn_right
- real (kind=dp_t), dimension(nspec) :: A, B
-
- B = HALF * (xn_left + xn_right)
- A = xn_right - B
-
- eos_state % xn = (TWO/M_PI) * A * atan(shell_atan_kappa * (shell_rho - eos_state % rho)) + B
- end subroutine composition_atan
-
-
- subroutine composition_equilibrium(eos_state)
-
- use bl_types
- use bl_constants_module, only: ZERO, HALF, ONE
- use bl_error_module, only: bl_error
- use network
- use actual_network, only: k_na23_ne23, k_ne23_na23
- use actual_rhs_module, only: rate_eval_t, evaluate_rates
- use eos_type_module, only: eos_t, composition
- use burn_type_module, only: burn_t, eos_to_burn
-
- implicit none
-
- type (eos_t), intent(inout) :: eos_state
- type (burn_t) :: burn_state
- double precision :: fopt, r_ecap, r_beta, dx
- double precision, parameter :: rate_equilibrium_tol = 1.0e-10
- integer, parameter :: max_equilibrium_iters = 10000
- type (rate_eval_t) :: rate_eval
-
- ! Get some mass fraction indices
- integer :: ic12, io16, ine23, ina23, j
-
- ! get the species indices
- ic12 = network_species_index("carbon-12")
- io16 = network_species_index("oxygen-16")
- ine23 = network_species_index("neon-23")
- ina23 = network_species_index("sodium-23")
-
- ! Initialize mass fractions given "in" values
- eos_state % xn(:) = 0.0d0
- eos_state % xn(ic12) = c12_in
- eos_state % xn(io16) = o16_in
- eos_state % xn(ine23) = HALF * na_ne_23
- eos_state % xn(ina23) = HALF * na_ne_23
-
- ! Estimate the mass fractions approximating the rates as
- ! independent of ye.
- call composition(eos_state)
- call eos_to_burn(eos_state, burn_state)
- call evaluate_rates(burn_state, rate_eval)
-
- r_ecap = rate_eval % screened_rates(k_na23_ne23)
- r_beta = rate_eval % screened_rates(k_ne23_na23)
-
- eos_state % xn(ine23) = na_ne_23/(ONE + r_beta/r_ecap)
- eos_state % xn(ina23) = na_ne_23 - eos_state % xn(ine23)
-
- ! Keep the mass fraction sum X(ne23) + X(na23) = na_ne_23
- ! Find the A=23 mass fractions such that A=23 Urca rates are in equilibrium
- ! Do Newton iterations approximating the rates as independent of mass fraction
- call fopt_urca_23(eos_state, fopt, r_ecap, r_beta)
-! write(*,*) 'fopt = ', fopt
- j = 1
- do while (abs(fopt) > rate_equilibrium_tol .and. j < max_equilibrium_iters)
-! write(*,*) 'iteration ', j, ' fopt = ', fopt
- dx = -fopt/(r_ecap + r_beta)
- if (fopt > ZERO) then
- eos_state % xn(ina23) = eos_state % xn(ina23) + dx
- eos_state % xn(ine23) = na_ne_23 - eos_state % xn(ina23)
- call fopt_urca_23(eos_state, fopt, r_ecap, r_beta)
- else
- eos_state % xn(ine23) = eos_state % xn(ine23) - dx
- eos_state % xn(ina23) = na_ne_23 - eos_state % xn(ine23)
- call fopt_urca_23(eos_state, fopt, r_ecap, r_beta)
- end if
- j = j + 1
-! write(*,*) 'xn = ', eos_state % xn
- end do
-
- if (j == max_equilibrium_iters) then
- call bl_error("species iteration did not converge!")
- end if
-
- end subroutine composition_equilibrium
-
-
- subroutine fopt_urca_23(eos_state, fopt, r_ecap, r_beta)
-
- use bl_constants_module, only: HALF
- use eos_type_module, only: eos_t, composition
- use network
- use actual_network, only: k_na23_ne23, k_ne23_na23
- use actual_rhs_module, only: rate_eval_t, evaluate_rates
- use burn_type_module, only: burn_t, eos_to_burn
-
- implicit none
-
- type (eos_t), intent(inout) :: eos_state
- double precision, intent(out) :: fopt, r_ecap, r_beta
- double precision :: xr_ecap, xr_beta
- integer :: ine23, ina23
- type (burn_t) :: burn_state
- type (rate_eval_t) :: rate_eval
-
- ine23 = network_species_index("neon-23")
- ina23 = network_species_index("sodium-23")
-
- call composition(eos_state)
- call eos_to_burn(eos_state, burn_state)
- call evaluate_rates(burn_state, rate_eval)
-
- r_ecap = rate_eval % screened_rates(k_na23_ne23)
- r_beta = rate_eval % screened_rates(k_ne23_na23)
-
- xr_ecap = burn_state % xn(ina23) * r_ecap
- xr_beta = burn_state % xn(ine23) * r_beta
-
- fopt = xr_ecap - xr_beta
-
- end subroutine fopt_urca_23
-
-end module urca_composition_module