From 4e87d7f64adc51dda1692ae7fee130a476847a0e Mon Sep 17 00:00:00 2001
From: Philip Cook <cookpa@pennmedicine.upenn.edu>
Date: Tue, 5 Dec 2023 16:38:29 -0500
Subject: [PATCH] STYLE: Remove unused CLI mangling code
---
ants/registration/apply_transforms.py | 9 ------
ants/registration/resample_image.py | 41 +++++++++++----------------
2 files changed, 16 insertions(+), 34 deletions(-)
diff --git a/ants/registration/apply_transforms.py b/ants/registration/apply_transforms.py
index 2b8575c6..d7b01046 100644
--- a/ants/registration/apply_transforms.py
+++ b/ants/registration/apply_transforms.py
@@ -161,15 +161,6 @@ def apply_transforms(fixed, moving, transformlist,
myargs = utils._int_antsProcessArguments(args)
- # NO CLUE WHAT THIS DOES OR WHY IT'S NEEDED
- for jj in range(len(myargs)):
- if myargs[jj] is not None:
- if myargs[jj] == '-':
- myargs2 = [None]*(len(myargs)-1)
- myargs2[:(jj-1)] = myargs[:(jj-1)]
- myargs2[jj:(len(myargs)-1)] = myargs[(jj+1):(len(myargs))]
- myargs = myargs2
-
myverb = int(verbose)
if verbose:
print(myargs)
diff --git a/ants/registration/resample_image.py b/ants/registration/resample_image.py
index 8e16203b..0151b5e1 100644
--- a/ants/registration/resample_image.py
+++ b/ants/registration/resample_image.py
@@ -1,5 +1,5 @@
-
+
__all__ = ['resample_image',
'resample_image_to_target']
@@ -11,7 +11,7 @@
def resample_image(image, resample_params, use_voxels=False, interp_type=1):
"""
- Resample image by spacing or number of voxels with
+ Resample image by spacing or number of voxels with
various interpolators. Works with multi-channel images.
ANTsR function: `resampleImage`
@@ -20,14 +20,14 @@ def resample_image(image, resample_params, use_voxels=False, interp_type=1):
---------
image : ANTsImage
input image
-
+
resample_params : tuple/list
vector of size dimension with numeric values
-
+
use_voxels : boolean
True means interpret resample params as voxel counts
-
- interp_type : integer
+
+ interp_type : integer
one of 0 (linear), 1 (nearest neighbor), 2 (gaussian), 3 (windowed sinc), 4 (bspline)
Returns
@@ -58,20 +58,20 @@ def resample_image(image, resample_params, use_voxels=False, interp_type=1):
def resample_image_to_target(image, target, interp_type='linear', imagetype=0, verbose=False, **kwargs):
"""
- Resample image by using another image as target reference.
- This function uses ants.apply_transform with an identity matrix
+ Resample image by using another image as target reference.
+ This function uses ants.apply_transform with an identity matrix
to achieve proper resampling.
-
+
ANTsR function: `resampleImageToTarget`
Arguments
---------
image : ANTsImage
image to resample
-
+
target : ANTsImage
image of reference, the output will be in this space
-
+
interp_type : string
Choice of interpolator. Supports partial matching.
linear
@@ -84,16 +84,16 @@ def resample_image_to_target(image, target, interp_type='linear', imagetype=0, v
hammingWindowedSinc
lanczosWindowedSinc
genericLabel use this for label images
-
- imagetype : integer
+
+ imagetype : integer
choose 0/1/2/3 mapping to scalar/vector/tensor/time-series
-
+
verbose : boolean
print command and run verbose application of transform.
-
+
kwargs : keyword arguments
additional arugment passed to antsApplyTransforms C code
-
+
Returns
-------
ANTsImage
@@ -145,15 +145,6 @@ def resample_image_to_target(image, target, interp_type='linear', imagetype=0, v
myargs = utils._int_antsProcessArguments(args)
- # NO CLUE WHAT THIS DOES OR WHY IT'S NEEDED
- for jj in range(len(myargs)):
- if myargs[jj] is not None:
- if myargs[jj] == '-':
- myargs2 = [None]*(len(myargs)-1)
- myargs2[:(jj-1)] = myargs[:(jj-1)]
- myargs2[jj:(len(myargs)-1)] = myargs[(jj+1):(len(myargs))]
- myargs = myargs2
-
myverb = int(verbose)
processed_args = myargs + ['-z', str(1), '-v', str(myverb), '--float', str(1), '-e', str(imagetype)]