@@ -1809,7 +1809,7 @@ def label_image_registration(fixed_label_images,
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"MSQ" ,
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get_pointer_string (deformable_multivariate_extras [kk ][1 ]),
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get_pointer_string (deformable_multivariate_extras [kk ][2 ]),
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- label_image_weights [kk ], 0.0 )
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+ deformable_multivariate_extras [kk ][ 3 ], 0.0 )
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syn_stage .append (metricString )
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syn_shrink_factors = "8x4x2x1"
@@ -1890,12 +1890,11 @@ def label_image_registration(fixed_label_images,
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find_forward_warps = np .where ([re .search ("[0-9]Warp.nii.gz" , ff ) for ff in all_xfrms ])[0 ]
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if len (find_inverse_warps ) > 0 :
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- fwdtransforms = [find_forward_warps [0 ], linear_xfrm_file ]
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- invtransforms = [linear_xfrm_file , find_inverse_warps [0 ]]
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- invtransforms = [ff for idx , ff in enumerate (all_xfrms ) if idx != find_forward_warps [0 ]]
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+ fwdtransforms = [all_xfrms [find_forward_warps [0 ]], linear_xfrm_file ]
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+ invtransforms = [linear_xfrm_file , all_xfrms [find_inverse_warps [0 ]]]
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else :
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- fwdtransforms = list ( reversed ( all_xfrms ))
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- invtransforms = all_xfrms
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+ fwdtransforms = [ linear_xfrm_file ]
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+ invtransforms = [ linear_xfrm_file ]
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if verbose :
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print ("\n \n Resulting transforms" )
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