diff --git a/_sources/notebooks/conversion_output/convert_DHARMA_LES_output_to_dephy_format.ipynb b/_sources/notebooks/conversion_output/convert_DHARMA_LES_output_to_dephy_format.ipynb index de129b81..96f48bbd 100644 --- a/_sources/notebooks/conversion_output/convert_DHARMA_LES_output_to_dephy_format.ipynb +++ b/_sources/notebooks/conversion_output/convert_DHARMA_LES_output_to_dephy_format.ipynb @@ -22,7 +22,7 @@ }, { "cell_type": "code", - "execution_count": 52, + "execution_count": 1, "metadata": { "tags": [] }, @@ -54,7 +54,7 @@ }, { "cell_type": "code", - "execution_count": 53, + "execution_count": 2, "metadata": { "tags": [] }, @@ -86,8 +86,8 @@ "#my_outfile = 'DHARMA_Lx25km_dx200_z0_4.nc'\n", "\n", "# ProgNa with ice test\n", - "my_readdir = 'case0313_diag_ice25_nomiz_dx100_specZ0_sbhomo'\n", - "my_outfile = 'DHARMA_Lx25_dx100_FixN.nc'\n", + "my_readdir = 'case0313_prog_ice25_nomiz_dx100_specZ0'\n", + "my_outfile = 'DHARMA_Lx25_dx100_ProgNa.nc'\n", "\n", "# specify local source directories (additional subdirectories if restart was required)\n", "\n", @@ -118,18 +118,25 @@ }, { "cell_type": "code", - "execution_count": 54, + "execution_count": 3, "metadata": { "tags": [] }, "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "ERROR 1: PROJ: proj_create_from_database: Open of /opt/conda/share/proj failed\n" + ] + }, { "name": "stdout", "output_type": "stream", "text": [ - "/data/home/floriantornow/dharma/sandbox/case0313_diag_ice25_nomiz_dx100_specZ0_sbhomo/0-20h/dharma.cdf\n", + "/data/home/floriantornow/dharma/sandbox/case0313_prog_ice25_nomiz_dx100_specZ0/0-20h/dharma.cdf\n", "do_ice = True\n", - "do_progNa = False\n" + "do_progNa = True\n" ] }, { @@ -513,9 +520,9 @@ " Subsidence int32 4B ...\n", " Turb int32 4B ...\n", " InvAnalysis int32 4B ...\n", - " carma int32 4B ...
    • " ], "text/plain": [ " Size: 104B\n", @@ -536,7 +543,7 @@ " carma int32 4B ..." ] }, - "execution_count": 54, + "execution_count": 3, "metadata": {}, "output_type": "execute_result" } @@ -568,7 +575,7 @@ }, { "cell_type": "code", - "execution_count": 55, + "execution_count": 4, "metadata": { "tags": [] }, @@ -577,7 +584,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "/data/home/floriantornow/dharma/sandbox/case0313_diag_ice25_nomiz_dx100_specZ0_sbhomo/0-20h/dharma.soundings.cdf\n" + "/data/home/floriantornow/dharma/sandbox/case0313_prog_ice25_nomiz_dx100_specZ0/0-20h/dharma.soundings.cdf\n" ] }, { @@ -946,26 +953,26 @@ " stroke: currentColor;\n", " fill: currentColor;\n", "}\n", - "
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        "    L_y:       25600.0\n",
        "    H:         7000.0\n",
-       "    theta_00:  247.95700073242188
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        "Attributes:\n",
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@@ -5176,7 +5980,7 @@
        "    L_x:       25600.0\n",
        "    L_y:       25600.0\n",
        "    H:         7000.0\n",
-       "    theta_00:  247.95700073242188
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    • " ], "text/plain": [ " Size: 56kB\n", @@ -12550,22 +14215,22 @@ "Coordinates:\n", " * time (time) datetime64[ns] 968B 2020-03-12T22:00:0...\n", "Data variables: (12/113)\n", - " iwp (time) float32 484B 0.0 0.0 0.0 ... 605.9 521.0\n", - " rms_iwp (time) float32 484B 0.0 0.0 ... 1.032e+03\n", - " iwpf (time) float32 484B 0.0 0.0 0.0 ... 474.2 421.6\n", - " iwpd (time) float32 484B 0.0 0.0 0.0 ... 87.27 57.32\n", - " iwpc (time) float32 484B 0.0 0.0 0.0 ... 44.49 42.08\n", - " max_qi (time) float32 484B 0.0 0.0 ... 0.002088\n", + " iwp (time) float32 484B 0.0 0.0 0.0 ... 356.9 380.3\n", + " rms_iwp (time) float32 484B 0.0 0.0 0.0 ... 648.8 721.5\n", + " iwpf (time) float32 484B 0.0 0.0 0.0 ... 265.7 289.7\n", + " iwpd (time) float32 484B 0.0 0.0 0.0 ... 44.03 43.01\n", + " iwpc (time) float32 484B 0.0 0.0 0.0 ... 47.16 47.61\n", + " max_qi (time) float32 484B 0.0 0.0 ... 0.002008\n", " ... ...\n", - " predictorstep_call (time) float32 484B 0.25 52.63 ... 1.375e+04\n", + " predictorstep_call (time) float32 484B 0.25 68.88 ... 1.818e+04\n", " setfirstphi_call (time) float32 484B 0.25 0.25 0.25 ... 0.25 0.25\n", - " forwardeuler_call (time) float32 484B 0.0 0.4781 ... 82.8 83.55\n", - " compsadvect_call (time) float32 484B 0.0 26.11 ... 5.734e+03\n", - " processsources_call (time) float32 484B 5.375 77.18 ... 1.906e+04\n", - " computepressureupdate_call (time) float32 484B 0.03125 3.366 ... 809.0" + " forwardeuler_call (time) float32 484B 0.0 0.075 ... 84.43 84.8\n", + " compsadvect_call (time) float32 484B 0.0 35.2 ... 7.944e+03\n", + " processsources_call (time) float32 484B 8.0 100.8 ... 2.432e+04\n", + " computepressureupdate_call (time) float32 484B 0.25 3.175 ... 824.8 833.6" ] }, - "execution_count": 57, + "execution_count": 6, "metadata": {}, "output_type": "execute_result" } @@ -12589,7 +14254,7 @@ }, { "cell_type": "code", - "execution_count": 58, + "execution_count": 7, "metadata": { "tags": [] }, @@ -12960,24 +14625,24 @@ " stroke: currentColor;\n", " fill: currentColor;\n", "}\n", - "
    <xarray.Dataset> Size: 58kB\n",
+       "
    <xarray.Dataset> Size: 59kB\n",
        "Dimensions:                     (time: 121)\n",
        "Coordinates:\n",
        "  * time                        (time) datetime64[ns] 968B 2020-03-12T22:00:0...\n",
-       "Data variables: (12/118)\n",
-       "    iwp                         (time) float32 484B 0.0 0.0 0.0 ... 605.9 521.0\n",
-       "    rms_iwp                     (time) float32 484B 0.0 0.0 ... 1.032e+03\n",
-       "    iwpf                        (time) float32 484B 0.0 0.0 0.0 ... 474.2 421.6\n",
-       "    iwpd                        (time) float32 484B 0.0 0.0 0.0 ... 87.27 57.32\n",
-       "    iwpc                        (time) float32 484B 0.0 0.0 0.0 ... 44.49 42.08\n",
-       "    max_qi                      (time) float32 484B 0.0 0.0 ... 0.002088\n",
+       "Data variables: (12/119)\n",
+       "    iwp                         (time) float32 484B 0.0 0.0 0.0 ... 356.9 380.3\n",
+       "    rms_iwp                     (time) float32 484B 0.0 0.0 0.0 ... 648.8 721.5\n",
+       "    iwpf                        (time) float32 484B 0.0 0.0 0.0 ... 265.7 289.7\n",
+       "    iwpd                        (time) float32 484B 0.0 0.0 0.0 ... 44.03 43.01\n",
+       "    iwpc                        (time) float32 484B 0.0 0.0 0.0 ... 47.16 47.61\n",
+       "    max_qi                      (time) float32 484B 0.0 0.0 ... 0.002008\n",
        "    ...                          ...\n",
-       "    computepressureupdate_call  (time) float32 484B 0.03125 3.366 ... 809.0\n",
        "    Psurf                       (time) float32 484B 9.954e+04 ... 9.954e+04\n",
-       "    opd_tot                     (time) float32 484B 0.0 0.0 0.0 ... 5.813 5.05\n",
-       "    LWdnSFC                     (time) float32 484B 120.6 120.6 ... 248.9 250.2\n",
+       "    opd_tot                     (time) float32 484B 0.0 0.0 0.0 ... 7.424 7.065\n",
+       "    LWdnSFC                     (time) float32 484B 120.7 120.7 ... 245.2 244.9\n",
        "    LWupSFC                     (time) float32 484B 211.0 211.0 ... 339.7 338.4\n",
-       "    avg_precip_ice              (time) float32 484B 0.0 0.0 ... 0.5576 0.6718
    • " ], "text/plain": [ - " Size: 58kB\n", + " Size: 59kB\n", "Dimensions: (time: 121)\n", "Coordinates:\n", " * time (time) datetime64[ns] 968B 2020-03-12T22:00:0...\n", - "Data variables: (12/118)\n", - " iwp (time) float32 484B 0.0 0.0 0.0 ... 605.9 521.0\n", - " rms_iwp (time) float32 484B 0.0 0.0 ... 1.032e+03\n", - " iwpf (time) float32 484B 0.0 0.0 0.0 ... 474.2 421.6\n", - " iwpd (time) float32 484B 0.0 0.0 0.0 ... 87.27 57.32\n", - " iwpc (time) float32 484B 0.0 0.0 0.0 ... 44.49 42.08\n", - " max_qi (time) float32 484B 0.0 0.0 ... 0.002088\n", + "Data variables: (12/119)\n", + " iwp (time) float32 484B 0.0 0.0 0.0 ... 356.9 380.3\n", + " rms_iwp (time) float32 484B 0.0 0.0 0.0 ... 648.8 721.5\n", + " iwpf (time) float32 484B 0.0 0.0 0.0 ... 265.7 289.7\n", + " iwpd (time) float32 484B 0.0 0.0 0.0 ... 44.03 43.01\n", + " iwpc (time) float32 484B 0.0 0.0 0.0 ... 47.16 47.61\n", + " max_qi (time) float32 484B 0.0 0.0 ... 0.002008\n", " ... ...\n", - " computepressureupdate_call (time) float32 484B 0.03125 3.366 ... 809.0\n", " Psurf (time) float32 484B 9.954e+04 ... 9.954e+04\n", - " opd_tot (time) float32 484B 0.0 0.0 0.0 ... 5.813 5.05\n", - " LWdnSFC (time) float32 484B 120.6 120.6 ... 248.9 250.2\n", + " opd_tot (time) float32 484B 0.0 0.0 0.0 ... 7.424 7.065\n", + " LWdnSFC (time) float32 484B 120.7 120.7 ... 245.2 244.9\n", " LWupSFC (time) float32 484B 211.0 211.0 ... 339.7 338.4\n", - " avg_precip_ice (time) float32 484B 0.0 0.0 ... 0.5576 0.6718" + " avg_precip_ice (time) float32 484B 0.0 0.0 ... 0.1508 0.2192\n", + " ssaf (time) float32 484B 8.448e+06 ... 5.864e+05" ] }, - "execution_count": 58, + "execution_count": 7, "metadata": {}, "output_type": "execute_result" } @@ -16008,7 +17743,7 @@ }, { "cell_type": "code", - "execution_count": 59, + "execution_count": 8, "metadata": { "tags": [] }, @@ -16868,7 +18603,7 @@ "73 ice nucleation source due to homogoeneous free... " ] }, - "execution_count": 59, + "execution_count": 8, "metadata": {}, "output_type": "execute_result" } @@ -16893,7 +18628,7 @@ }, { "cell_type": "code", - "execution_count": 60, + "execution_count": 9, "metadata": { "tags": [] }, @@ -16908,7 +18643,7 @@ }, { "cell_type": "code", - "execution_count": 61, + "execution_count": 10, "metadata": { "tags": [] }, @@ -16977,7 +18712,7 @@ }, { "cell_type": "code", - "execution_count": 62, + "execution_count": 11, "metadata": { "tags": [] }, @@ -17220,7 +18955,7 @@ " m-2 s-1\n", " time\n", " when using prognostic aerosol; emission only (...\n", - " missing data\n", + " ssaf\n", " 1.000000\n", " \n", " \n", @@ -17440,7 +19175,7 @@ " kg-1\n", " time, height\n", " when using prognostic aerosol; scene (all sky)...\n", - " missing data\n", + " na_1\n", " 1.000000\n", " \n", " \n", @@ -17450,7 +19185,7 @@ " kg-1\n", " time, height\n", " accumulation mode\n", - " missing data\n", + " na_2\n", " 1.000000\n", " \n", " \n", @@ -17460,7 +19195,7 @@ " kg-1\n", " time, height\n", " sea spray mode\n", - " missing data\n", + " na_3\n", " 1.000000\n", " \n", " \n", @@ -17670,8 +19405,8 @@ " kg-1 s-1\n", " time, height\n", " activated and unactivated aerosol (sum over al...\n", - " missing data\n", - " 1.000000\n", + " na_loss_liq\n", + " -1.000000\n", " \n", " \n", " 69\n", @@ -17680,8 +19415,8 @@ " kg-1 s-1\n", " time, height\n", " activated and unactivated aerosol (sum over al...\n", - " missing data\n", - " 1.000000\n", + " na_loss_ice\n", + " -1.000000\n", " \n", " \n", " 70\n", @@ -17690,7 +19425,7 @@ " kg-1 s-1\n", " time, height\n", " activated and unactivated aerosol (sum over al...\n", - " missing data\n", + " dna_mixing\n", " 1.000000\n", " \n", " \n", @@ -17968,7 +19703,7 @@ "20 LWupTOA 1.000000 \n", "21 LWdnSFC 1.000000 \n", "22 LWupSFC 1.000000 \n", - "23 missing data 1.000000 \n", + "23 ssaf 1.000000 \n", "24 pressure 1.000000 \n", "25 u 1.000000 \n", "26 v 1.000000 \n", @@ -17990,9 +19725,9 @@ "42 nic 1.000000 \n", "43 nif 1.000000 \n", "44 nid 1.000000 \n", - "45 missing data 1.000000 \n", - "46 missing data 1.000000 \n", - "47 missing data 1.000000 \n", + "45 na_1 1.000000 \n", + "46 na_2 1.000000 \n", + "47 na_3 1.000000 \n", "48 nlcic 1.000000 \n", "49 niic 1.000000 \n", "50 eps 1.000000 \n", @@ -18013,15 +19748,15 @@ "65 dth_turb 1.000000 \n", "66 dq_micro 1.000000 \n", "67 dq_turb 1.000000 \n", - "68 missing data 1.000000 \n", - "69 missing data 1.000000 \n", - "70 missing data 1.000000 \n", + "68 na_loss_liq -1.000000 \n", + "69 na_loss_ice -1.000000 \n", + "70 dna_mixing 1.000000 \n", "71 Sice_het 1.000000 \n", "72 Sice_sec 1.000000 \n", "73 Sice_hom 1.000000 " ] }, - "execution_count": 62, + "execution_count": 11, "metadata": {}, "output_type": "execute_result" } @@ -18163,7 +19898,7 @@ }, { "cell_type": "code", - "execution_count": 63, + "execution_count": 12, "metadata": { "tags": [] }, @@ -18172,14 +19907,13 @@ "name": "stdout", "output_type": "stream", "text": [ - "The file ./../../output_les/dharma/sandbox/DHARMA_Lx25_dx100_FixN.nc has been deleted successfully\n", "\n", "root group (NETCDF3_CLASSIC data model, file format NETCDF3):\n", " title: DHARMA LES results for COMBLE-MIP case: fixed Nd and Ni\n", " reference: https://github.com/ARM-Development/comble-mip\n", " authors: Ann Fridlind (ann.fridlind@nasa.gov) and Florian Tornow (florian.tornow@nasa.gov)\n", - " source: /data/home/floriantornow/dharma/sandbox/case0313_diag_ice25_nomiz_dx100_specZ0_sbhomo/0-20h/dharma.scalars.cdf\n", - " version: 2024-06-06 17:51:04\n", + " source: /data/home/floriantornow/dharma/sandbox/case0313_prog_ice25_nomiz_dx100_specZ0/0-20h/dharma.scalars.cdf\n", + " version: 2024-07-09 15:26:59\n", " format_version: DEPHY SCM format version 1.6\n", " script: convert_DHARMA_LES_output_to_dephy_format.ipynb\n", " startDate: 2020-03-12 22:00:00.0\n", @@ -18288,7 +20022,7 @@ }, { "cell_type": "code", - "execution_count": 64, + "execution_count": 13, "metadata": { "tags": [] }, @@ -18683,8 +20417,8 @@ " title: DHARMA LES results for COMBLE-MIP case: fixed Nd and Ni\n", " reference: https://github.com/ARM-Development/comble-mip\n", " authors: Ann Fridlind (ann.fridlind@nasa.gov) and Florian Tornow ...\n", - " source: /data/home/floriantornow/dharma/sandbox/case0313_diag_ic...\n", - " version: 2024-06-06 17:51:04\n", + " source: /data/home/floriantornow/dharma/sandbox/case0313_prog_ic...\n", + " version: 2024-07-09 15:26:59\n", " format_version: DEPHY SCM format version 1.6\n", " ... ...\n", " dx: 100.0 m\n", @@ -18692,7 +20426,7 @@ " dz: see zf variable\n", " nx: 256\n", " ny: 256\n", - " nz: 159
  • title :
    DHARMA LES results for COMBLE-MIP case: fixed Nd and Ni
    reference :
    https://github.com/ARM-Development/comble-mip
    authors :
    Ann Fridlind (ann.fridlind@nasa.gov) and Florian Tornow (florian.tornow@nasa.gov)
    source :
    /data/home/floriantornow/dharma/sandbox/case0313_prog_ice25_nomiz_dx100_specZ0/0-20h/dharma.scalars.cdf
    version :
    2024-07-09 15:26:59
    format_version :
    DEPHY SCM format version 1.6
    script :
    convert_DHARMA_LES_output_to_dephy_format.ipynb
    startDate :
    2020-03-12 22:00:00.0
    force_geo :
    1
    surfaceType :
    ocean (after spin-up)
    surfaceForcing :
    ts (after spin-up)
    lat :
    73.0 deg N
    dx :
    100.0 m
    dy :
    100.0 m
    dz :
    see zf variable
    nx :
    256
    ny :
    256
    nz :
    159
    • " ], "text/plain": [ " Size: 8MB\n", @@ -18832,8 +20566,8 @@ " title: DHARMA LES results for COMBLE-MIP case: fixed Nd and Ni\n", " reference: https://github.com/ARM-Development/comble-mip\n", " authors: Ann Fridlind (ann.fridlind@nasa.gov) and Florian Tornow ...\n", - " source: /data/home/floriantornow/dharma/sandbox/case0313_diag_ic...\n", - " version: 2024-06-06 17:51:04\n", + " source: /data/home/floriantornow/dharma/sandbox/case0313_prog_ic...\n", + " version: 2024-07-09 15:26:59\n", " format_version: DEPHY SCM format version 1.6\n", " ... ...\n", " dx: 100.0 m\n", @@ -18844,7 +20578,7 @@ " nz: 159" ] }, - "execution_count": 64, + "execution_count": 13, "metadata": {}, "output_type": "execute_result" } @@ -18856,7 +20590,7 @@ }, { "cell_type": "code", - "execution_count": 65, + "execution_count": 14, "metadata": {}, "outputs": [ { @@ -18895,7 +20629,7 @@ " 5.50000004e-06])" ] }, - "execution_count": 65, + "execution_count": 14, "metadata": {}, "output_type": "execute_result" } diff --git a/notebooks/conversion_output/convert_DHARMA_LES_output_to_dephy_format.html b/notebooks/conversion_output/convert_DHARMA_LES_output_to_dephy_format.html index 3f17ddc5..6759d1e2 100644 --- a/notebooks/conversion_output/convert_DHARMA_LES_output_to_dephy_format.html +++ b/notebooks/conversion_output/convert_DHARMA_LES_output_to_dephy_format.html @@ -511,8 +511,8 @@

    Specify directory locations#my_outfile = 'DHARMA_Lx25km_dx200_z0_4.nc' # ProgNa with ice test -my_readdir = 'case0313_diag_ice25_nomiz_dx100_specZ0_sbhomo' -my_outfile = 'DHARMA_Lx25_dx100_FixN.nc' +my_readdir = 'case0313_prog_ice25_nomiz_dx100_specZ0' +my_outfile = 'DHARMA_Lx25_dx100_ProgNa.nc' # specify local source directories (additional subdirectories if restart was required) @@ -559,9 +559,12 @@

    Read set-up parameters
    -
    /data/home/floriantornow/dharma/sandbox/case0313_diag_ice25_nomiz_dx100_specZ0_sbhomo/0-20h/dharma.cdf
+
    ERROR 1: PROJ: proj_create_from_database: Open of /opt/conda/share/proj failed
+
    
+
    
+
    /data/home/floriantornow/dharma/sandbox/case0313_prog_ice25_nomiz_dx100_specZ0/0-20h/dharma.cdf
 do_ice =  True
-do_progNa =  False
+do_progNa =  True
 
    
 
    
 
    
@@ -942,9 +945,9 @@ 
    Read set-up parameters
    + 277.8 278. 278.2 278.5 279.1 279.4 279.4 279.3 277.8]
    [1 values with dtype=int32]
  • Subsidence
    ()
    int32
    ...
    use_datafile :
    1
    file_name :
    DHARMA_LES_ASCII_comble.input_forcing
    t_offset :
    0.0
    n_wbar :
    3
    z_wbar :
    [ 0. 2000. 3200.]
    p_wbar :
    [ 0. -0.372 -0.372]
    attenuate :
    0
    h_inv :
    300.0
    div :
    1.86e-06
    t0 :
    0.0
    bc :
    2
    use_zt :
    1
    [1 values with dtype=int32]
  • Turb
    ()
    int32
    ...
    forcing_applied :
    1
    delta_choice :
    1
    delta_level :
    1
    delta_fixed :
    100.0
    delta_mult :
    1.0
    Prandtl :
    0.4
    c_eps :
    0.93
    c_s :
    0.18
    use_deardorff :
    0
    dry_buoy :
    0
    use_LLAMA_models :
    1
    use_hybrid :
    0
    use_SFClayer :
    1
    sl_damp_on :
    0
    sl_coef :
    1.0
    sl_coef_sca :
    1.0
    sl_height :
    2.0
    sl_exp :
    3
    sl_model :
    1
    [1 values with dtype=int32]
  • InvAnalysis
    ()
    int32
    ...
    qt_inv :
    -0.008
    thl_inv :
    -295.0
    th_grad :
    1
    [1 values with dtype=int32]
  • carma
    ()
    int32
    ...
    ifile_aer :
    0
    fname_aer :
    dhai.input_aer
    nz_init :
    2
    z_init :
    [ 0. 4000.]
    ntot :
    [90.01 90. ]
    rsig :
    [1.28 1.28]
    rg :
    [0.03 0.03]
    nmode_extra :
    1
    ntot_1 :
    [15.001 15. ]
    rsig_1 :
    [1.75 1.75]
    rg_1 :
    [0.14 0.14]
    pps :
    0.0
    ngroup :
    2
    nelem :
    3
    nccn :
    1
    nbin :
    35
    rmin :
    [0.01 1. ]
    mrat :
    [2. 2.]
    ri_rho :
    0.4
    ri_rmin :
    200.0
    ri_rmax :
    300.0
    dtime_min :
    0.1
    use_th_qv :
    0
    adj_tstar :
    1
    ice :
    0
    n_mD_icef :
    6
    r_mD_icef :
    [ 0. 2.5 60. 110. 450. 1000. ]
    a_mD_icef :
    [0.48014 0.00874257 0.00739 0.00419 0.0033 0.0028 ]
    b_mD_icef :
    [3. 2.488 2.45 2.3 2.2 2.1 ]
    a_AD_icef :
    [0.785398 0.176255 0.2285 0.2285 0.2285 0.2285 ]
    b_AD_icef :
    [2. 1.81895 1.88 1.88 1.88 1.88 ]
    n_mD_iced :
    3
    r_mD_iced :
    [ 0. 2.5 100. ]
    a_mD_iced :
    [0.48014 0.0239118 0.049 ]
    b_mD_iced :
    [3. 2.6166 2.8 ]
    a_AD_iced :
    [0.785398 0.31378 0.5 ]
    b_AD_iced :
    [2. 1.88166 2. ]
    do_coag :
    1
    icollec :
    2
    ibreakup :
    0
    do_in :
    0
    do_hm :
    0
    r_hm :
    10.0
    rmin_hm :
    150.0
    ised :
    3
    do_source_sfc :
    0
    rmin_qr :
    40.0
    conmax :
    0.001
    itest :
    0
    few_pc :
    1e-10
    s_spinup :
    1.0
    t_spinup :
    3600.0
    do_blendbo :
    1
    do_init_conc :
    1
    do_prog_ccn :
    0
    [1 values with dtype=int32]
      • @@ -971,7 +974,7 @@

      Read domain-mean profiles -
      /data/home/floriantornow/dharma/sandbox/case0313_diag_ice25_nomiz_dx100_specZ0_sbhomo/0-20h/dharma.soundings.cdf
+
      /data/home/floriantornow/dharma/sandbox/case0313_prog_ice25_nomiz_dx100_specZ0/0-20h/dharma.soundings.cdf
 
      
 
      
 
      
@@ -1337,26 +1340,26 @@ 
      Read domain-mean profiles
@@ -5561,26 +6361,26 @@ 
      Profile unit conversions and sundry
@@ -9604,7 +11219,7 @@ 
      Read domain-mean scalars
-
      /data/home/floriantornow/dharma/sandbox/case0313_diag_ice25_nomiz_dx100_specZ0_sbhomo/0-20h/dharma.scalars.cdf
+
      /data/home/floriantornow/dharma/sandbox/case0313_prog_ice25_nomiz_dx100_specZ0/0-20h/dharma.scalars.cdf
 
      
 
      
 
      
@@ -9975,19 +11590,19 @@ 
      Read domain-mean scalars
 
      
@@ -13219,24 +14880,24 @@ 
      Read domain-mean scalars
-
      The file ./../../output_les/dharma/sandbox/DHARMA_Lx25_dx100_FixN.nc has been deleted successfully
-<class 'netCDF4._netCDF4.Dataset'>
+
      <class 'netCDF4._netCDF4.Dataset'>
 root group (NETCDF3_CLASSIC data model, file format NETCDF3):
     title: DHARMA LES results for COMBLE-MIP case: fixed Nd and Ni
     reference: https://github.com/ARM-Development/comble-mip
     authors: Ann Fridlind (ann.fridlind@nasa.gov) and Florian Tornow (florian.tornow@nasa.gov)
-    source: /data/home/floriantornow/dharma/sandbox/case0313_diag_ice25_nomiz_dx100_specZ0_sbhomo/0-20h/dharma.scalars.cdf
-    version: 2024-06-06 17:51:04
+    source: /data/home/floriantornow/dharma/sandbox/case0313_prog_ice25_nomiz_dx100_specZ0/0-20h/dharma.scalars.cdf
+    version: 2024-07-09 15:26:59
     format_version: DEPHY SCM format version 1.6
     script: convert_DHARMA_LES_output_to_dephy_format.ipynb
     startDate: 2020-03-12 22:00:00.0
@@ -18310,8 +20040,8 @@ 
      Check output file
 
      
diff --git a/notebooks/notebook-template.html b/notebooks/notebook-template.html
index bc7df0da..a3dc544e 100644
--- a/notebooks/notebook-template.html
+++ b/notebooks/notebook-template.html
@@ -588,8 +588,8 @@ 
      of further and further
 
      header levels#
      
 
      as well \(m = a * t / h\) text! Similarly, you have access to other \(\LaTeX\) equation functionality via MathJax (demo below from link),
      
-
      
-()#\[\begin{align}
+
      
+()#\[\begin{align}
 \dot{x} & = \sigma(y-x) \\
 \dot{y} & = \rho x - y - xz \\
 \dot{z} & = -\beta z + xy
diff --git a/searchindex.js b/searchindex.js
index 96dfda50..aefb6361 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"alltitles": {"(1) LES: Domain-Mean Variables": [[22, "les-domain-mean-variables"]], "(2) LES: Two-Dimensional Fields": [[22, "les-two-dimensional-fields"]], "(3) LES: Three-Dimensional Fields": [[22, "les-three-dimensional-fields"]], "(4) SCM": [[22, "scm"]], "2d": [[16, "d"]], "3d": [[16, "id1"]], "A content subsection": [[21, "a-content-subsection"]], "ARM Notebook Template": [[21, "arm-notebook-template"]], "Absence of cloud streets in 100-m LES simulations": [[41, "absence-of-cloud-streets-in-100-m-les-simulations"]], "Acknowledgment and References": [[38, "acknowledgment-and-references"]], "Add Your New File": [[0, "add-your-new-file"]], "Add times": [[7, "add-times"], [7, "id7"]], "Adding Your Changes": [[0, "adding-your-changes"]], "Aerosol specification": [[39, "aerosol-specification"]], "Aerosol-Cloud Column Model (AC-1D)": [[37, "aerosol-cloud-column-model-ac-1d"]], "Aerosol-Ice Nucleating Particle Closure": [[38, "aerosol-ice-nucleating-particle-closure"]], "Another content subsection": [[21, "another-content-subsection"]], "Apply for Elevated JupyterHub Access": [[20, "apply-for-elevated-jupyterhub-access"]], "Approach": [[29, "approach"]], "Assumptions": [[37, "assumptions"]], "Authors": [[1, "authors"], [37, "authors"]], "Background & Motivation": [[1, "background-motivation"]], "COMBLE Model-Observation Intercomparison Project Cookbook": [[1, "comble-model-observation-intercomparison-project-cookbook"]], "Calculate and append additional variables": [[8, "calculate-and-append-additional-variables"], [15, "calculate-and-append-additional-variables"]], "Calculate some additional variables requested, and add them to the xarray": [[17, "calculate-some-additional-variables-requested-and-add-them-to-the-xarray"]], "Calculate the predicted INPs": [[38, "calculate-the-predicted-inps"]], "Calculate the size distribution": [[39, "calculate-the-size-distribution"]], "Check ModelE against LES for the \u201cFixN_noice\u201d configuration": [[32, "check-modele-against-les-for-the-fixn-noice-configuration"]], "Check ModelE output against LES for the \u201cFixN\u201d configuration": [[30, "check-modele-output-against-les-for-the-fixn-configuration"]], "Check all SCMs against LES for the \u201cFixN_noice\u201d configuration": [[33, "check-all-scms-against-les-for-the-fixn-noice-configuration"]], "Check all SCMs against LES for the \u201cFixN\u201d configuration": [[31, "check-all-scms-against-les-for-the-fixn-configuration"]], "Check my LES run": [[24, "check-my-les-run"]], "Check my SCM run": [[25, "check-my-scm-run"]], "Check output file": [[8, "check-output-file"], [9, "check-output-file"], [12, "check-output-file"], [13, "check-output-file"], [14, "check-output-file"], [15, "check-output-file"], [17, "check-output-file"]], "Cloning Your Code": [[0, "cloning-your-code"]], "Close the file": [[7, "close-the-file"], [7, "id9"]], "Compare FixN LES Sims": [[34, "compare-fixn-les-sims"]], "Compare FixN_def_z0 LES Sims": [[35, "compare-fixn-def-z0-les-sims"]], "Compare FixN_noice LES Sims": [[36, "compare-fixn-noice-les-sims"]], "Comparison of the Predicted INPs with Observed INPs": [[38, "comparison-of-the-predicted-inps-with-observed-inps"]], "Compute skin temperature tendency": [[7, "compute-skin-temperature-tendency"]], "Compute wind forcing tendency": [[7, "compute-wind-forcing-tendency"]], "Contributers Guide": [[0, "contributers-guide"]], "Convert DEPHY forcing to UCLALES-SALSA forcing": [[6, "convert-dephy-forcing-to-uclales-salsa-forcing"]], "Convert UCLALES-SALSA output to DEPHY format": [[16, "convert-uclales-salsa-output-to-dephy-format"]], "Create DEPHY output file": [[8, "create-dephy-output-file"], [9, "create-dephy-output-file"], [12, "create-dephy-output-file"], [13, "create-dephy-output-file"], [14, "create-dephy-output-file"], [15, "create-dephy-output-file"], [16, "create-dephy-output-file"], [17, "create-dephy-output-file"]], "Create dimensions": [[7, "create-dimensions"], [7, "id3"]], "Create global attributes": [[7, "create-global-attributes"], [7, "id4"]], "Create input files for DHARMA LES in ASCII format": [[5, "create-input-files-for-dharma-les-in-ascii-format"]], "Create input files for ModelE3 SCM": [[5, "create-input-files-for-modele3-scm"]], "Create input files for UCLALES-SALSA in ASCII format": [[6, "create-input-files-for-uclales-salsa-in-ascii-format"]], "Create input files for WRF-LES in ASCII or NetCDF format": [[7, "create-input-files-for-wrf-les-in-ascii-or-netcdf-format"]], "Create new netcdf file": [[7, "create-new-netcdf-file"], [7, "id2"], [18, "create-new-netcdf-file"], [19, "create-new-netcdf-file"]], "Create variables": [[7, "create-variables"], [7, "id5"]], "Create vertical grid": [[18, "create-vertical-grid"], [19, "create-vertical-grid"]], "DEPHY Forcing Derivation": [[18, "dephy-forcing-derivation"], [19, "dephy-forcing-derivation"]], "Danger": [[21, null]], "Definitions for the requested outputs": [[16, "definitions-for-the-requested-outputs"]], "Derived Closure Datasets as csv Files": [[38, "derived-closure-datasets-as-csv-files"]], "Derived Closure Datasets as netcdf Files": [[38, "derived-closure-datasets-as-netcdf-files"]], "Dimensions": [[7, "dimensions"], [7, "id6"]], "Discussion and community input welcomed": [[41, "discussion-and-community-input-welcomed"]], "Do surface forcing": [[18, "do-surface-forcing"], [19, "do-surface-forcing"]], "Documentation": [[37, "documentation"]], "Echo values for manual input": [[5, "echo-values-for-manual-input"]], "Emergence of strong streets in DHARMA LES of a Northwest Atlantic CAO": [[41, "emergence-of-strong-streets-in-dharma-les-of-a-northwest-atlantic-cao"]], "Evaluation of LES against satellite and ground-based observations": [[26, "evaluation-of-les-against-satellite-and-ground-based-observations"], [27, "evaluation-of-les-against-satellite-and-ground-based-observations"]], "Example: convert AOSCM output to DEPHY format": [[8, "example-convert-aoscm-output-to-dephy-format"]], "Example: convert DEPHY forcing to DHARMA LES and ModelE3 SCM formats": [[5, "example-convert-dephy-forcing-to-dharma-les-and-modele3-scm-formats"]], "Example: convert DEPHY forcing to WRF-LES forcing": [[7, "example-convert-dephy-forcing-to-wrf-les-forcing"]], "Example: convert DHARMA LES 2D output to DEPHY format": [[10, "example-convert-dharma-les-2d-output-to-dephy-format"]], "Example: convert DHARMA LES 3D output to DEPHY format": [[11, "example-convert-dharma-les-3d-output-to-dephy-format"]], "Example: convert DHARMA LES output to DEPHY format": [[9, "example-convert-dharma-les-output-to-dephy-format"]], "Example: convert E3SMv2 SCM output to DEPHY format": [[12, "example-convert-e3smv2-scm-output-to-dephy-format"]], "Example: convert E3SMv3 SCM output to DEPHY format": [[13, "example-convert-e3smv3-scm-output-to-dephy-format"]], "Example: convert ModelE3 SCM output to DEPHY format": [[15, "example-convert-modele3-scm-output-to-dephy-format"]], "Example: convert WRF-LES output to DEPHY format": [[17, "example-convert-wrf-les-output-to-dephy-format"]], "Export the Datasets of Predicted INPs": [[38, "export-the-datasets-of-predicted-inps"]], "Forcing NetCDF name and delete file if already exists": [[7, "forcing-netcdf-name-and-delete-file-if-already-exists"], [7, "id1"]], "Gather all files": [[17, "gather-all-files"]], "Generate 2d and 3d outputs - test": [[16, "generate-2d-and-3d-outputs-test"]], "Generate output": [[16, "generate-output"]], "Generate outputs": [[16, "generate-outputs"], [16, "id2"]], "Get Geostrophic wind forcing": [[18, "get-geostrophic-wind-forcing"], [19, "get-geostrophic-wind-forcing"]], "Goals": [[3, "goals"]], "Goals and Hypotheses": [[3, "goals-and-hypotheses"]], "Grid coordinates": [[6, "grid-coordinates"]], "Hypothesis": [[29, "hypothesis"]], "Import libraries": [[5, "import-libraries"], [6, "import-libraries"], [7, "import-libraries"], [8, "import-libraries"], [9, "import-libraries"], [10, "import-libraries"], [11, "import-libraries"], [12, "import-libraries"], [13, "import-libraries"], [14, "import-libraries"], [15, "import-libraries"], [16, "import-libraries"], [17, "import-libraries"], [18, "import-libraries"], [19, "import-libraries"]], "Imports": [[21, "imports"], [22, "imports"], [23, "imports"], [38, "imports"], [39, "imports"]], "Inefficient right now, but only takes ~15 seconds\u2026": [[17, "inefficient-right-now-but-only-takes-15-seconds"]], "Info": [[21, null]], "Input Conversion Examples": [[1, "input-conversion-examples"]], "Interested Modeling Groups": [[23, "interested-modeling-groups"]], "Interested Observational Groups": [[23, "interested-observational-groups"]], "Interpolate profile variables from WRF\u2019s native vertical grid to requested vertical grid": [[17, "interpolate-profile-variables-from-wrfs-native-vertical-grid-to-requested-vertical-grid"]], "Interpolate profiles": [[18, "interpolate-profiles"], [19, "interpolate-profiles"]], "Interpolate to fixed pressure vertical grid": [[8, "interpolate-to-fixed-pressure-vertical-grid"]], "Jaegle et al. (2011) surface particle flux integrated over all sizes": [[40, "jaegle-et-al-2011-surface-particle-flux-integrated-over-all-sizes"]], "Last Section": [[21, "last-section"]], "List of Planned Participants": [[23, "list-of-planned-participants"]], "Locate 2D files": [[10, "locate-2d-files"], [11, "locate-2d-files"]], "Main Model Configuration": [[4, "main-model-configuration"]], "Match DHARMA variables to requested outputs": [[9, "match-dharma-variables-to-requested-outputs"]], "Match E3SM variables to requested outputs": [[12, "match-e3sm-variables-to-requested-outputs"], [13, "match-e3sm-variables-to-requested-outputs"]], "Match ICON variables to requested outputs": [[14, "match-icon-variables-to-requested-outputs"]], "Match ModelE3 variables to requested outputs": [[8, "match-modele3-variables-to-requested-outputs"], [15, "match-modele3-variables-to-requested-outputs"]], "Match WRF variables to requested outputs": [[17, "match-wrf-variables-to-requested-outputs"]], "Model Inputs": [[1, "model-inputs"]], "Move to a New Branch": [[0, "move-to-a-new-branch"]], "NOTE: If a variable is missing in your reporting, do not fill it with values of zero, -999, etc. This causes issues for our plotting routines. Instead, simply do not fill the variable field or set the values to NaN.": [[22, "note-if-a-variable-is-missing-in-your-reporting-do-not-fill-it-with-values-of-zero-999-etc-this-causes-issues-for-our-plotting-routines-instead-simply-do-not-fill-the-variable-field-or-set-the-values-to-nan"]], "Notes": [[4, "notes"], [42, "notes"]], "Open a Pull Request": [[0, "open-a-pull-request"]], "Open a Terminal and Use Git Command Line Tools": [[0, "open-a-terminal-and-use-git-command-line-tools"]], "Output Conversion Examples": [[1, "output-conversion-examples"]], "Overview": [[21, "overview"], [38, "overview"], [39, "overview"]], "Ozone file": [[7, "ozone-file"]], "Part I": [[42, "part-i"]], "Part II": [[42, "part-ii"]], "Part II (optional; all SCM/small-domain LES)": [[42, "part-ii-optional-all-scm-small-domain-les"]], "Plot the PSD": [[39, "plot-the-psd"]], "Prepare output file in DEPHY format": [[8, "prepare-output-file-in-dephy-format"], [9, "prepare-output-file-in-dephy-format"], [10, "prepare-output-file-in-dephy-format"], [11, "prepare-output-file-in-dephy-format"], [12, "prepare-output-file-in-dephy-format"], [13, "prepare-output-file-in-dephy-format"], [15, "prepare-output-file-in-dephy-format"], [16, "prepare-output-file-in-dephy-format"], [17, "prepare-output-file-in-dephy-format"]], "Prerequisites": [[21, "prerequisites"], [38, "prerequisites"]], "Pressure file": [[7, "pressure-file"]], "Profile unit conversions and sundry": [[9, "profile-unit-conversions-and-sundry"]], "Properties of observed cloud streets": [[41, "properties-of-observed-cloud-streets"]], "Pushing Your Changes": [[0, "pushing-your-changes"]], "Python Notebooks": [[1, "python-notebooks"]], "Questions & Hypotheses": [[3, "questions-hypotheses"]], "Read 2D files": [[10, "read-2d-files"], [11, "read-2d-files"]], "Read DHARMA data": [[9, "read-dharma-data"], [10, "read-dharma-data"], [11, "read-dharma-data"]], "Read Data from Google Sheets": [[22, "read-data-from-google-sheets"], [23, "read-data-from-google-sheets"]], "Read E3SM data": [[12, "read-e3sm-data"], [13, "read-e3sm-data"]], "Read ICON-SCM data": [[14, "read-icon-scm-data"]], "Read ModelE3 data": [[8, "read-modele3-data"], [15, "read-modele3-data"]], "Read WRF data": [[17, "read-wrf-data"]], "Read data from Google Sheets": [[39, "read-data-from-google-sheets"]], "Read domain-mean profiles": [[9, "read-domain-mean-profiles"], [17, "read-domain-mean-profiles"]], "Read domain-mean scalars": [[9, "read-domain-mean-scalars"], [17, "read-domain-mean-scalars"]], "Read forcing file and get model height at mid points and edges": [[17, "read-forcing-file-and-get-model-height-at-mid-points-and-edges"]], "Read forcing winds from forcing file": [[7, "read-forcing-winds-from-forcing-file"]], "Read in data from ERA5 backtrajectory (netCDF)": [[18, "read-in-data-from-era5-backtrajectory-netcdf"], [19, "read-in-data-from-era5-backtrajectory-netcdf"]], "Read parameters settings": [[17, "read-parameters-settings"]], "Read requested variables list": [[8, "read-requested-variables-list"], [9, "read-requested-variables-list"], [10, "read-requested-variables-list"], [11, "read-requested-variables-list"], [12, "read-requested-variables-list"], [13, "read-requested-variables-list"], [14, "read-requested-variables-list"], [15, "read-requested-variables-list"], [16, "read-requested-variables-list"], [17, "read-requested-variables-list"]], "Read set-up parameters": [[9, "read-set-up-parameters"]], "Read single file containing all output data": [[8, "read-single-file-containing-all-output-data"], [12, "read-single-file-containing-all-output-data"], [13, "read-single-file-containing-all-output-data"], [14, "read-single-file-containing-all-output-data"], [15, "read-single-file-containing-all-output-data"]], "Read skin temperature from forcing file": [[7, "read-skin-temperature-from-forcing-file"]], "Read the COMBLE-MIP forcing file": [[5, "read-the-comble-mip-forcing-file"], [6, "read-the-comble-mip-forcing-file"], [7, "read-the-comble-mip-forcing-file"]], "References": [[37, "references"], [39, "references"]], "Repeat z_ls 1D array to be 2D array for writing": [[7, "repeat-z-ls-1d-array-to-be-2d-array-for-writing"]], "Requested Model Outputs": [[22, "requested-model-outputs"]], "Requirements": [[37, "requirements"]], "Resources and references": [[21, "resources-and-references"]], "Sanity check": [[17, "sanity-check"]], "Sensitivities": [[29, "sensitivities"]], "Sensitivity to roughness lengths": [[29, "sensitivity-to-roughness-lengths"]], "Sensitivity to solar radiation, subsidence and treatment of ice surface": [[28, "sensitivity-to-solar-radiation-subsidence-and-treatment-of-ice-surface"]], "Set things for future calculations": [[18, "set-things-for-future-calculations"], [19, "set-things-for-future-calculations"]], "Smooth initial water vapor mixing ratio profile": [[18, "smooth-initial-water-vapor-mixing-ratio-profile"], [19, "smooth-initial-water-vapor-mixing-ratio-profile"]], "Specify directory locations": [[8, "specify-directory-locations"], [9, "specify-directory-locations"], [10, "specify-directory-locations"], [11, "specify-directory-locations"], [12, "specify-directory-locations"], [13, "specify-directory-locations"], [14, "specify-directory-locations"], [15, "specify-directory-locations"], [16, "specify-directory-locations"], [17, "specify-directory-locations"]], "Specify local write directory": [[5, "specify-local-write-directory"], [6, "specify-local-write-directory"], [7, "specify-local-write-directory"]], "Specify wind forcing type": [[5, "specify-wind-forcing-type"]], "Specifying Surface Aerosol Emissions for Simulations with Multi-Modal Aerosol": [[40, "specifying-surface-aerosol-emissions-for-simulations-with-multi-modal-aerosol"]], "Step-by-step (model operation)": [[37, "step-by-step-model-operation"]], "Subsection to the second section": [[21, "subsection-to-the-second-section"]], "Subset variables depending on 1D time series, domain mean soundings, 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\ No newline at end of file
+Search.setIndex({"alltitles": {"(1) LES: Domain-Mean Variables": [[22, "les-domain-mean-variables"]], "(2) LES: Two-Dimensional Fields": [[22, "les-two-dimensional-fields"]], "(3) LES: Three-Dimensional Fields": [[22, "les-three-dimensional-fields"]], "(4) SCM": [[22, "scm"]], "2d": [[16, "d"]], "3d": [[16, "id1"]], "A content subsection": [[21, "a-content-subsection"]], "ARM Notebook Template": [[21, "arm-notebook-template"]], "Absence of cloud streets in 100-m LES simulations": [[41, "absence-of-cloud-streets-in-100-m-les-simulations"]], "Acknowledgment and References": [[38, "acknowledgment-and-references"]], "Add Your New File": [[0, "add-your-new-file"]], "Add times": [[7, "add-times"], [7, "id7"]], "Adding Your Changes": [[0, "adding-your-changes"]], "Aerosol specification": [[39, "aerosol-specification"]], "Aerosol-Cloud Column Model (AC-1D)": [[37, "aerosol-cloud-column-model-ac-1d"]], "Aerosol-Ice Nucleating Particle Closure": [[38, "aerosol-ice-nucleating-particle-closure"]], "Another content subsection": [[21, "another-content-subsection"]], "Apply for Elevated JupyterHub Access": [[20, "apply-for-elevated-jupyterhub-access"]], "Approach": [[29, "approach"]], "Assumptions": [[37, "assumptions"]], "Authors": [[1, "authors"], [37, "authors"]], "Background & Motivation": [[1, "background-motivation"]], "COMBLE Model-Observation Intercomparison Project Cookbook": [[1, "comble-model-observation-intercomparison-project-cookbook"]], "Calculate and append additional variables": [[8, "calculate-and-append-additional-variables"], [15, "calculate-and-append-additional-variables"]], "Calculate some additional variables requested, and add them to the xarray": [[17, "calculate-some-additional-variables-requested-and-add-them-to-the-xarray"]], "Calculate the predicted INPs": [[38, "calculate-the-predicted-inps"]], "Calculate the size distribution": [[39, "calculate-the-size-distribution"]], "Check ModelE against LES for the \u201cFixN_noice\u201d configuration": [[32, "check-modele-against-les-for-the-fixn-noice-configuration"]], "Check ModelE output against LES for the \u201cFixN\u201d configuration": [[30, "check-modele-output-against-les-for-the-fixn-configuration"]], "Check all SCMs against LES for the \u201cFixN_noice\u201d configuration": [[33, "check-all-scms-against-les-for-the-fixn-noice-configuration"]], "Check all SCMs against LES for the \u201cFixN\u201d configuration": [[31, "check-all-scms-against-les-for-the-fixn-configuration"]], "Check my LES run": [[24, "check-my-les-run"]], "Check my SCM run": [[25, "check-my-scm-run"]], "Check output file": [[8, "check-output-file"], [9, "check-output-file"], [12, "check-output-file"], [13, "check-output-file"], [14, "check-output-file"], [15, "check-output-file"], [17, "check-output-file"]], "Cloning Your Code": [[0, "cloning-your-code"]], "Close the file": [[7, "close-the-file"], [7, "id9"]], "Compare FixN LES Sims": [[34, "compare-fixn-les-sims"]], "Compare FixN_def_z0 LES Sims": [[35, "compare-fixn-def-z0-les-sims"]], "Compare FixN_noice LES Sims": [[36, "compare-fixn-noice-les-sims"]], "Comparison of the Predicted INPs with Observed INPs": [[38, "comparison-of-the-predicted-inps-with-observed-inps"]], "Compute skin temperature tendency": [[7, "compute-skin-temperature-tendency"]], "Compute wind forcing tendency": [[7, "compute-wind-forcing-tendency"]], "Contributers Guide": [[0, "contributers-guide"]], "Convert DEPHY forcing to UCLALES-SALSA forcing": [[6, "convert-dephy-forcing-to-uclales-salsa-forcing"]], "Convert UCLALES-SALSA output to DEPHY format": [[16, "convert-uclales-salsa-output-to-dephy-format"]], "Create DEPHY output file": [[8, "create-dephy-output-file"], [9, "create-dephy-output-file"], [12, "create-dephy-output-file"], [13, "create-dephy-output-file"], [14, "create-dephy-output-file"], [15, "create-dephy-output-file"], [16, "create-dephy-output-file"], [17, "create-dephy-output-file"]], "Create dimensions": [[7, "create-dimensions"], [7, "id3"]], "Create global attributes": [[7, "create-global-attributes"], [7, "id4"]], "Create input files for DHARMA LES in ASCII format": [[5, "create-input-files-for-dharma-les-in-ascii-format"]], "Create input files for ModelE3 SCM": [[5, "create-input-files-for-modele3-scm"]], "Create input files for UCLALES-SALSA in ASCII format": [[6, "create-input-files-for-uclales-salsa-in-ascii-format"]], "Create input files for WRF-LES in ASCII or NetCDF format": [[7, "create-input-files-for-wrf-les-in-ascii-or-netcdf-format"]], "Create new netcdf file": [[7, "create-new-netcdf-file"], [7, "id2"], [18, "create-new-netcdf-file"], [19, "create-new-netcdf-file"]], "Create variables": [[7, "create-variables"], [7, "id5"]], "Create vertical grid": [[18, "create-vertical-grid"], [19, "create-vertical-grid"]], "DEPHY Forcing Derivation": [[18, "dephy-forcing-derivation"], [19, "dephy-forcing-derivation"]], "Danger": [[21, null]], "Definitions for the requested outputs": [[16, "definitions-for-the-requested-outputs"]], "Derived Closure Datasets as csv Files": [[38, "derived-closure-datasets-as-csv-files"]], "Derived Closure Datasets as netcdf Files": [[38, "derived-closure-datasets-as-netcdf-files"]], "Dimensions": [[7, "dimensions"], [7, "id6"]], "Discussion and community input welcomed": [[41, "discussion-and-community-input-welcomed"]], "Do surface forcing": [[18, "do-surface-forcing"], [19, "do-surface-forcing"]], "Documentation": [[37, "documentation"]], "Echo values for manual input": [[5, "echo-values-for-manual-input"]], "Emergence of strong streets in DHARMA LES of a Northwest Atlantic CAO": [[41, "emergence-of-strong-streets-in-dharma-les-of-a-northwest-atlantic-cao"]], "Evaluation of LES against satellite and ground-based observations": [[26, "evaluation-of-les-against-satellite-and-ground-based-observations"], [27, "evaluation-of-les-against-satellite-and-ground-based-observations"]], "Example: convert AOSCM output to DEPHY format": [[8, "example-convert-aoscm-output-to-dephy-format"]], "Example: convert DEPHY forcing to DHARMA LES and ModelE3 SCM formats": [[5, "example-convert-dephy-forcing-to-dharma-les-and-modele3-scm-formats"]], "Example: convert DEPHY forcing to WRF-LES forcing": [[7, "example-convert-dephy-forcing-to-wrf-les-forcing"]], "Example: convert DHARMA LES 2D output to DEPHY format": [[10, "example-convert-dharma-les-2d-output-to-dephy-format"]], "Example: convert DHARMA LES 3D output to DEPHY format": [[11, "example-convert-dharma-les-3d-output-to-dephy-format"]], "Example: convert DHARMA LES output to DEPHY format": [[9, "example-convert-dharma-les-output-to-dephy-format"]], "Example: convert E3SMv2 SCM output to DEPHY format": [[12, "example-convert-e3smv2-scm-output-to-dephy-format"]], "Example: convert E3SMv3 SCM output to DEPHY format": [[13, "example-convert-e3smv3-scm-output-to-dephy-format"]], "Example: convert ModelE3 SCM output to DEPHY format": [[15, "example-convert-modele3-scm-output-to-dephy-format"]], "Example: convert WRF-LES output to DEPHY format": [[17, "example-convert-wrf-les-output-to-dephy-format"]], "Export the Datasets of Predicted INPs": [[38, "export-the-datasets-of-predicted-inps"]], "Forcing NetCDF name and delete file if already exists": [[7, "forcing-netcdf-name-and-delete-file-if-already-exists"], [7, "id1"]], "Gather all files": [[17, "gather-all-files"]], "Generate 2d and 3d outputs - test": [[16, "generate-2d-and-3d-outputs-test"]], "Generate output": [[16, "generate-output"]], "Generate outputs": [[16, "generate-outputs"], [16, "id2"]], "Get Geostrophic wind forcing": [[18, "get-geostrophic-wind-forcing"], [19, "get-geostrophic-wind-forcing"]], "Goals": [[3, "goals"]], "Goals and Hypotheses": [[3, "goals-and-hypotheses"]], "Grid coordinates": [[6, "grid-coordinates"]], "Hypothesis": [[29, "hypothesis"]], "Import libraries": [[5, "import-libraries"], [6, "import-libraries"], [7, "import-libraries"], [8, 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