Dockerfile.analyse_genomes

FROM artbio/ansible-galaxy-os:2004
LABEL maintainer_2="Christophe Antoniewski <drosofff@gmail.com>"

# prevent stalled proftpd install by ansible later on
RUN apt-get update && apt-get -qq install proftpd proftpd-mod-pgsql

RUN DEBIAN_FRONTEND=noninteractive  apt-get update  && \
    \
    \
    echo "===> Allow start of services"  && \
    echo "exit 0" > /usr/sbin/policy-rc.d  && \
    \
    apt-get install -qq --no-install-recommends \
    apt-transport-https software-properties-common

RUN apt-get install sudo -o Dpkg::Options::="--force-confold"

ONBUILD  RUN  DEBIAN_FRONTEND=noninteractive  apt-get update   && \
              echo "===> Updating TLS certificates..."         && \
              apt-get install -y openssl ca-certificates

COPY  .  /setup
WORKDIR /setup

RUN sed -i -e 's/^# en_US.UTF-8 UTF-8/en_US.UTF-8 UTF-8/'  /etc/locale.gen && locale-gen

ENV LC_ALL=en_US.UTF-8 \
    LANG=en_US.UTF-8

# work around for AUFS bug
# as per https://github.com/docker/docker/issues/783#issuecomment-56013588
RUN mkdir /etc/ssl/private-copy /var/lib/postgresql-copy && \
    mv /var/lib/postgresql/* /var/lib/postgresql-copy && \
    mv /etc/ssl/private/* /etc/ssl/private-copy/ && \
    rm -R /var/lib/postgresql /etc/ssl/private/ && \
    mv /var/lib/postgresql-copy /var/lib/postgresql && \
    mv /etc/ssl/private-copy /etc/ssl/private && \
    chmod -R 0700 /var/lib/postgresql /etc/ssl/private && \
    chown -R 1550:1550 /var/lib/postgresql /var/run/postgresql \
    /var/log/postgresql /etc/ssl/private /etc/postgresql

RUN echo 'root ALL=(ALL:ALL) ALL' >> /etc/sudoers && echo 'postgres ALL=(ALL:ALL) ALL' >> /etc/sudoers
RUN echo '%sudo ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers

RUN ansible-galaxy install -r requirements_roles.yml -p roles -f && \
    ansible-playbook -i inventory_files/Analyse_genomes -c local galaxy.yml && \
    sleep 120 && \
    sed -i 's/uwsgi_read_timeout 300;/uwsgi_read_timeout 1200;/g' /etc/nginx/nginx.conf && \
    nginx -s reload  && \
    ansible-playbook -i inventory_files/Analyse_genomes -c local galaxy_tool_install.yml

ENV NGINX_GALAXY_LOCATION="" \
GALAXY_CONFIG_ADMIN_USERS="admin@galaxy.org" \
NAT_MASQUERADE=false

ONBUILD  WORKDIR  /setup
ONBUILD  COPY  .  /setup
ADD startup.sh /startup.sh
RUN chmod +x /startup.sh

# Expose port 80 (webserver), 21 (FTP server), 8800 (Proxy), 9002 (supvisord web app)
EXPOSE :80
EXPOSE :21
EXPOSE :8800
EXPOSE :9002

CMD ["/startup.sh", "/setup/inventory_files/Analyse_genomes"]