diff --git a/README.md b/README.md index 74659ad..7ccdfa1 100644 --- a/README.md +++ b/README.md @@ -10,13 +10,13 @@ PRINSEQ++ is a C++ implementation of the prinseq-lite.pl program. It can be used 4. pthread ## Download -If you are just interested in compiling and using PRINSEQ++, download the latest [version](https://github.com/Adrian-Cantu/PRINSEQ-plus-plus/releases/download/v1.2-devel/prinseq-plus-plus-1.2-devel.tar.gz). -You can also download the [binary](https://github.com/Adrian-Cantu/PRINSEQ-plus-plus/releases/download/v1.2-devel/binary_prinseq-plus-plus-1.2-devel.tar.gz). +If you are just interested in compiling and using PRINSEQ++, download the latest [version](https://github.com/Adrian-Cantu/PRINSEQ-plus-plus/releases/download/v1.2/prinseq-plus-plus-1.2.tar.gz). +You can also download the [binary](https://github.com/Adrian-Cantu/PRINSEQ-plus-plus/releases/download/v1.2/binary_prinseq-plus-plus-1.2.tar.gz). If you want to edit the source code, clone this repository. ## To install -1. tar -xvf prinseq-plus-plus-1.2-devel.tar.gz -2. cd prinseq-plus-plus-1.2-devel +1. tar -xvf prinseq-plus-plus-1.2.tar.gz +2. cd prinseq-plus-plus-1.2 3. ./configure 4. make 5. make test diff --git a/changelog b/changelog index 0dec561..2153e3a 100644 --- a/changelog +++ b/changelog @@ -1,3 +1,11 @@ +1.2 +- Added -trim_left, -trim_right to trim reads unconditionally +- Added the -phred64 option for old files +- Added -out_good , -out_single , -out_bad, -out_good2 , -out_single2, -out_bad2 + in case you want to manually name output files. unused options default to the default + filename. You can even send two output streams to the same file. +- fixed a bug were -noiupac was filtering RNA sequences. (those containing 'U') + 1.1 Added verbose options and an options to read fasta files. Speed up run time by only performing filters on good reads. diff --git a/configure.ac b/configure.ac index f8089ae..ee6c39c 100644 --- a/configure.ac +++ b/configure.ac @@ -2,7 +2,7 @@ # Process this file with autoconf to produce a configure script. AC_PREREQ([2.69]) -AC_INIT([PRINSEQ++], [1.2-devel], [garbanyo@gmail.com] ,[prinseq-plus-plus], [https://github.com/Adrian-Cantu/PRINSEQ-plus-plus]) +AC_INIT([PRINSEQ++], [1.2], [garbanyo@gmail.com] ,[prinseq-plus-plus], [https://github.com/Adrian-Cantu/PRINSEQ-plus-plus]) ##AM_INIT_AUTOMAKE AC_CONFIG_SRCDIR([src/main.cpp]) AC_LANG([C++])