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<div class="title">calc_chemistry.h</div> </div>
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<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// Copyright 2020, the Aether Development Team (see doc/dev_team.md for members)</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// Full license can be found in License.md</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span>  </div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="preprocessor">#ifndef INCLUDE_CALC_CHEMISTRY_H_</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="preprocessor">#define INCLUDE_CALC_CHEMISTRY_H_</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span>  </div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="preprocessor">#include <vector></span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="preprocessor">#include <string></span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="preprocessor">#include "../include/ions.h"</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#include "../include/neutrals.h"</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#include "../include/times.h"</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor">#include "../include/grid.h"</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include "../include/report.h"</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span>  </div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="keyword">class </span><a class="code" href="classChemistry.html">Chemistry</a> {</div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span>  </div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span>  <span class="keyword">public</span>:</div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span>  </div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span>  <a class="code" href="classChemistry.html">Chemistry</a>(<a class="code" href="classInputs.html">Inputs</a> args, <a class="code" href="classReport.html">Report</a> report);</div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span>  </div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span>  <span class="keyword">struct </span>reaction_type {</div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span>  <span class="comment">// Reactions:</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  <span class="comment">// loss1 + loss2 + loss3 -> source1 + source2 + source3</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span>  </div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span>  std::vector<std::string> sources_names;</div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  std::vector<std::string> losses_names;</div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span>  </div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  std::vector<int> sources_ids;</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  std::vector<int> sources_IsNeutrals;</div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  </div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  std::vector<int> losses_ids;</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  std::vector<int> losses_IsNeutrals;</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  </div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  precision_t rate;</div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  };</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  </div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  std::vector<reaction_type> reactions;</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  </div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  <span class="keyword">struct </span>sources_and_losses_type {</div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  precision_t neutral_sources[nSpecies];</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  precision_t neutral_losses[nSpecies];</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  precision_t ion_sources[nIons];</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  precision_t ion_losses[nIons];</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  precision_t heat_neutrals;</div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  precision_t heat_ions;</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  precision_t heat_electrons;</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  };</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  </div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> <span class="preprocessor">#endif // INCLUDE_CALC_CHEMISTRY_H_</span></div>
</div><!-- fragment --></div><!-- contents -->
<div class="ttc" id="aclassChemistry_html"><div class="ttname"><a href="classChemistry.html">Chemistry</a></div><div class="ttdef"><b>Definition:</b> chemistry.h:10</div></div>
<div class="ttc" id="aclassInputs_html"><div class="ttname"><a href="classInputs.html">Inputs</a></div><div class="ttdef"><b>Definition:</b> inputs.h:10</div></div>
<div class="ttc" id="aclassReport_html"><div class="ttname"><a href="classReport.html">Report</a></div><div class="ttdef"><b>Definition:</b> report.h:28</div></div>
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