Dockerfile

# Allow overrides of base version we build from
ARG BASE_IMAGE_VERSION=1.2
ARG BASE_IMAGE=agdrone/drone-workflow:${BASE_IMAGE_VERSION}

# Build our basic install
FROM node:current-alpine as build

WORKDIR /app/react_frontend

# Prepare for the build
COPY ./package.json ./
COPY ./package-lock.json ./

RUN echo ${BASE_IMAGE}

# Run the build
RUN npm ci

# Copy other files where we want them
COPY ./public ./public
COPY ./src ./src
COPY ./public/production_scripts.js ./public/additional_scripts.js
COPY ./src/ProductionUtils.js ./src/Utils.js

RUN npm run build

FROM ${BASE_IMAGE}

WORKDIR /web_site

# Allow Session secret key override
ARG SECRET_KEY=this_is_not_a_secret_key_252627

# Allow port number overrides
ARG PORT_NUMBER=3000

# Set upload/working data folder
ARG WORKING_FOLDER=/web_site/uploads
RUN mkdir ${WORKING_FOLDER} && chmod 777 ${WORKING_FOLDER}

# Setup workflow file folder
ARG WORKFLOW_FOLDER=/web_site/workflow
RUN mkdir ${WORKFLOW_FOLDER} && chmod 777 ${WORKFLOW_FOLDER}

# Copy the build
COPY --from=build /app/react_frontend/build/* ./

# Install additional packages
RUN apt-get update && \
    apt-get install -y --no-install-recommends git && \
    apt-get install -y --no-install-recommends python3-dev && \
    apt-get install -y --no-install-recommends gcc g++ && \
    apt-get autoremove -y && \
    apt-get clean && \
    rm -rf /var/lib/apt/lists/*

# Install requirements
COPY ./requirements.txt ./
RUN python3 -m pip install --upgrade --no-cache-dir pip
RUN python3 -m pip install --upgrade --no-cache-dir -r requirements.txt
RUN python3 -m pip install --upgrade --no-cache-dir setuptools

# Copy files to where we want them
RUN mkdir templates && mv index.html templates/
COPY ./*.py ./*.sh ./

# COPY ./test_data ./test_data
# TODO: Get the pylint resource file
# TODO: install testing environment (plot-base-rgb: 1.9)
# TODO: install test images:https://data.cyverse.org/dav-anon/iplant/projects/aes/cct/diag/sample-data/sample_plot_images.zip and place in separate folders

EXPOSE ${PORT_NUMBER}

ENV PYTHONPATH="${PYTHONPATH}:/app/react_frontend"  \
    SERVER_DIR="/app/flask_backend" \
    WEB_SITE_URL="0.0.0.0:"${PORT_NUMBER} \
    WORKING_FOLDER=$WORKING_FOLDER \
    WORKFLOW_FOLDER=$WORKFLOW_FOLDER \
    SECRET_KEY=$SECRET_KEY \
    ATLANA_USE_SCIF_WORKFLOW= 

ENTRYPOINT gunicorn -w 4 -b ${WEB_SITE_URL} --access-logfile '-' main:app --timeout 18000