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build status pypi Supported Python version

aidbox-python-sdk

  1. Create a python 3.9+ environment pyenv
  2. Set env variables and activate virtual environment source activate_settings.sh
  3. Install the required packages with pipenv install --dev
  4. Make sure the app's settings are configured correctly (see activate_settings.sh and aidbox_python_sdk/settings.py). You can also use environment variables to define sensitive settings, eg. DB connection variables (see example .env-ptl)
  5. You can then run example with python example.py.

Getting started

Minimal application

main.py

from aidbox_python_sdk.main import create_app as _create_app
from aidbox_python_sdk.settings import Settings
from aidbox_python_sdk.sdk import SDK


settings = Settings(**{})
sdk = SDK(settings, resources={}, seeds={})


def create_app():
    app = await _create_app(SDK)
    return app


async def create_gunicorn_app() -> web.Application:
    return create_app()

Register handler for operation

import logging
from aiohttp import web
from aidbox_python_sdk.types import SDKOperation, SDKOperationRequest

from yourappfolder import sdk 


@sdk.operation(
    methods=["POST", "PATCH"],
    path=["signup", "register", {"name": "date"}, {"name": "test"}],
    timeout=60000  ## Optional parameter to set a custom timeout for operation in milliseconds
)
def signup_register_op(_operation: SDKOperation, request: SDKOperationRequest):
    """
    POST /signup/register/21.02.19/testvalue
    PATCH /signup/register/22.02.19/patchtestvalue
    """
    logging.debug("`signup_register_op` operation handler")
    logging.debug("Operation data: %s", operation)
    logging.debug("Request: %s", request)
    return web.json_response({"success": "Ok", "request": request["route-params"]})

Usage of AppKeys

To access Aidbox Client, SDK, settings, DB Proxy the app (web.Application) is extended by default with the following app keys that are defined in aidbox_python_sdk.app_keys module:

from aidbox_python_sdk import app_keys as ak
from aidbox_python_sdk.types import SDKOperation, SDKOperationRequest

@sdk.operation(["POST"], ["example"])
async def update_organization_op(_operation: SDKOperation, request: SDKOperationRequest):
    app = request.app
    client = app[ak.client] # AsyncAidboxClient
    sdk = app[ak.sdk] # SDK
    settings = app[ak.settings] # Settings
    db = app[ak.db] # DBProxy
    return web.json_response()

Usage of FHIR Client

FHIR Client is not plugged in by default, however, to use it you can extend the app by adding new AppKey

app/app_keys.py

from fhirpy import AsyncFHIRClient

fhir_client: web.AppKey[AsyncFHIRClient] = web.AppKey("fhir_client", AsyncFHIRClient)

main.py

from collections.abc import AsyncGenerator

from aidbox_python_sdk.main import create_app as _create_app
from aidbox_python_sdk.settings import Settings
from aidbox_python_sdk.sdk import SDK
from aiohttp import BasicAuth, web
from fhirpy import AsyncFHIRClient

from app import app_keys as ak

settings = Settings(**{})
sdk = SDK(settings, resources={}, seeds={)

def create_app():
    app = await _create_app(SDK)
    app.cleanup_ctx.append(fhir_clients_ctx)
    return app


async def create_gunicorn_app() -> web.Application:
    return create_app()


async def fhir_clients_ctx(app: web.Application) -> AsyncGenerator[None, None]:
    app[ak.fhir_client] = await init_fhir_client(app[ak.settings], "/fhir")

    yield


async def init_fhir_client(settings: Settings, prefix: str = "") -> AsyncFHIRClient:
    basic_auth = BasicAuth(
        login=settings.APP_INIT_CLIENT_ID,
        password=settings.APP_INIT_CLIENT_SECRET,
    )

    return AsyncFHIRClient(
        f"{settings.APP_INIT_URL}{prefix}",
        authorization=basic_auth.encode(),
        dump_resource=lambda x: x.model_dump(),
    )

After that, you can use app[ak.fhir_client] that has the type AsyncFHIRClient everywhere where the app is available.

Usage of request_schema

from aidbox_python_sdk.types import SDKOperation, SDKOperationRequest

schema = {
    "required": ["params", "resource"],
    "properties": {
        "params": {
            "type": "object",
            "required": ["abc", "location"],
            "properties": {"abc": {"type": "string"}, "location": {"type": "string"}},
            "additionalProperties": False,
        },
        "resource": {
            "type": "object",
            "required": ["organizationType", "employeesCount"],
            "properties": {
                "organizationType": {"type": "string", "enum": ["profit", "non-profit"]},
                "employeesCount": {"type": "number"},
            },
            "additionalProperties": False,
        },
    },
}


@sdk.operation(["POST"], ["Organization", {"name": "id"}, "$update"], request_schema=schema)
async def update_organization_op(_operation: SDKOperation, request: SDKOperationRequest):
    location = request["params"]["location"]
    return web.json_response({"location": location})

Valid request example

POST /Organization/org-1/$update?abc=xyz&location=us

organizationType: non-profit
employeesCount: 10