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node_modules | ||
.env |
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AIDBOX_LICENSE= | ||
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AIDBOX_DEV_MODE=true | ||
AIDBOX_FHIR_VERSION=4.0.1 | ||
AIDBOX_FHIR_SCHEMA_VALIDATION=true | ||
AIDBOX_FHIR_PACKAGES=hl7.fhir.r4.core#4.0.1:hl7.fhir.uv.ips#1.1.0 | ||
AIDBOX_TERMINOLOGY_SERVICE_BASE_URL="https://r4.ontoserver.csiro.au/fhir" | ||
AIDBOX_COMPLIANCE=enabled | ||
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PGPORT=5432 | ||
PGHOST=aidbox-db | ||
PGHOSTPORT=5437 | ||
PGUSER=postgres | ||
PGPASSWORD=postgres | ||
PGDATABASE=aidbox | ||
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AIDBOX_BASE_URL=http://aidbox:8888 | ||
AIDBOX_PORT=8888 | ||
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AIDBOX_CLIENT_SECRET=secret | ||
AIDBOX_CLIENT_ID=root | ||
AIDBOX_ADMIN_PASSWORD=password | ||
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APP_PORT=4000 | ||
APP_URL=http://node-app:4000 | ||
APP_SECRET=secret | ||
APP_CALLBACK_URL=/aidbox | ||
APP_ID=my-app | ||
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BOX_AUTH_KEYS_SECRET=auth-key-secret | ||
BOX_AUTH_KEYS_PRIVATE="-----BEGIN RSA PRIVATE KEY-----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\nE5C0rXOvAlrvK09p4HGXLrwQxjrWt8R7rPvaD2yqVKLP4liFj8RMdg==\n-----END RSA PRIVATE KEY-----\n" | ||
BOX_AUTH_KEYS_PUBLIC="-----BEGIN PUBLIC KEY-----\nMIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEApbUYGNmCz1P8G0j/FFOj\nx1d5GNssJ/jj6xasSwTIbjjt6FtYCDw8o7hayOc/u8aUqXCGhK3JD2T9gtKv9/rV\n30w4YzmHhA8OOuLJE7tfh/PJA4Hn4i2JJ30BuoZ7rPTlTRGdc1FS3XFdmBQtnplE\nkJ7y8qbdrVme3Kbtn+BR1BdtgwSybpNH2yqh3bb6PwpgNSMH7BIkBWL4A6QDpaFf\n1/9jSNE1vO25ssLC+bhFQNWLYriu+HogzEf9NWIrR2W29mI1QiA7wqvEuhg1yx38\nylWD8GhCGL6+2QLKBYgp7DIGv6UoTnqcVISatdQ51lVcCPmU6L1BhmcXVti6dWBI\n+wIDAQAB\n-----END PUBLIC KEY-----\n" |
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FROM node:20 | ||
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WORKDIR /app | ||
RUN corepack enable | ||
COPY . . | ||
RUN pnpm install --frozen-lockfile | ||
RUN pnpm run build | ||
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EXPOSE 4000 | ||
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CMD [ "node", "build/index.js" ] |
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FROM node:20-slim | ||
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ENV DEBIAN_FRONTEND=noninteractive | ||
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RUN apt-get update -y | ||
RUN apt-get install -y rsync | ||
RUN corepack enable | ||
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WORKDIR /usr/src/app-cache | ||
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COPY package.json . | ||
RUN pnpm install | ||
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WORKDIR /usr/src/app | ||
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EXPOSE 4000 |
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# Implementation of IPS FHIR IG on Aidbox FHIR platform | ||
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This repository contains pre-configured Aidbox instance and implementation of `$summary` operation defined by IPS: | ||
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- [FHIRSchema](https://docs.aidbox.app/modules-1/profiling-and-validation/fhir-schema-validator) | ||
- FHIR 4.3.0, ca.infoway.io.psca | ||
- [Topic-based subscriptions](https://docs.aidbox.app/modules-1/topic-based-subscriptions) | ||
- [$summary](https://build.fhir.org/ig/HL7/fhir-ips/OperationDefinition-summary.html) operation | ||
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## Prerequisites | ||
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- [Docker](https://www.docker.com/) | ||
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## STEP 1: Environment and Aidbox license | ||
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Copy `.env.tpl` file into `.env` file: | ||
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```shell | ||
cp .env.tpl .env | ||
``` | ||
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If you are hosting Aidbox on your local computer, obtain the self-hosted license as described in the [documentation](https://docs.aidbox.app/getting-started/run-aidbox-locally-with-docker). | ||
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Add the license (`AIDBOX_LICENSE`) int the .env file. | ||
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## STEP 2: Run aidbox and node-app in Docker | ||
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```shell | ||
docker compose up --build | ||
``` | ||
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On start, the node-app will create [App resource](https://docs.aidbox.app/app-development/aidbox-sdk/aidbox-apps), [upload](./src/index.ts#L142) a sample FHIR [Bundle](./src/patientData.ts) with patient data. | ||
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## Step 3: Open and log in into Aidbox instance | ||
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Open in browser http://localhost:8888 | ||
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And log in witn username: `admin` and password: `password` | ||
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## Step 4: Request $summary using REST Console | ||
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In the Aidbox admin window, navigate to the APIs section and choose REST Console. | ||
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The [$summary](https://build.fhir.org/ig/HL7/fhir-ips/OperationDefinition-summary.html) operation requires either the logical ID (`Patient.id`) or a business identifier (`Patient.identifier`) of the patient. | ||
To request the IPS "document" _Bundle_ for a specific patient using the REST Console, you can use the following request: | ||
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``` | ||
GET /fhir/Patient/[id]/$summary | ||
``` | ||
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Or you can use request with `identifier` search parameter: | ||
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``` | ||
GET /fhir/Patient/$summary?identifier=<patient-identifier> | ||
``` | ||
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## Step 5: Check if topic-based-subscriptions works | ||
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[Here](./zrc/main.edn) is configured one SubscriptionTopic (triggers if new resource Observation has valueQuantity > 10). | ||
Table "observation_topic" will be used. | ||
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Let's check if it works. Create observation: | ||
``` | ||
POST /fhir/Observation | ||
status: final | ||
code: | ||
text: text | ||
valueQuantity: | ||
value: 11 | ||
``` | ||
Check Subscription Topics tab or check `observation_topic` table in Db Console: | ||
```sql | ||
select * from observation_topic | ||
``` | ||
Read more about Topic-Based Subscriptions: https://docs.aidbox.app/modules-1/topic-based-subscriptions | ||
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version: "3.7" | ||
volumes: | ||
ips_pgdata: | ||
name: ips_pgdata | ||
services: | ||
aidbox-db: | ||
image: healthsamurai/aidboxdb:16.1 | ||
pull_policy: always | ||
ports: | ||
- "${PGHOSTPORT}:5432" | ||
volumes: | ||
- "ips_pgdata:/data:delegated" | ||
environment: | ||
POSTGRES_USER: "${PGUSER}" | ||
POSTGRES_PASSWORD: "${PGPASSWORD}" | ||
POSTGRES_DB: "${PGDATABASE}" | ||
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aidbox: | ||
image: healthsamurai/aidboxone:edge | ||
pull_policy: always | ||
depends_on: ["aidbox-db"] | ||
volumes: | ||
- "./zrc:/aidbox-project/zrc" | ||
- "./tmp:/tmp" | ||
ports: | ||
- "${AIDBOX_PORT}:${AIDBOX_PORT}" | ||
env_file: | ||
- .env | ||
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node-app: | ||
hostname: node-app | ||
build: | ||
context: ./ | ||
dockerfile: Dockerfile.dev | ||
ports: | ||
- 4000:4000 | ||
user: node | ||
command: sh -c "rsync -ar /usr/src/app-cache/node_modules/. /usr/src/app/node_modules && pnpm run dev" | ||
env_file: | ||
- .env | ||
volumes: | ||
- ./:/usr/src/app |
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{ | ||
"watch": ["src/**/*.ts"], | ||
"ext": "ts", | ||
"legacyWatch": true, | ||
"exec": "node --loader ts-node/esm ./src/index.ts" | ||
} |
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{ | ||
"name": "app", | ||
"version": "1.0.0", | ||
"description": "", | ||
"main": "src/index.ts", | ||
"type": "module", | ||
"engines": { | ||
"node": ">=18.0" | ||
}, | ||
"scripts": { | ||
"clean": "rm -rf build/ *.tsbuildinfo", | ||
"dev": "NODE_ENV=development nodemon", | ||
"start": "nodemon", | ||
"ci:test": "echo \"Error: no test specified\" ", | ||
"build": "pnpm run clean && tsc -b --force" | ||
}, | ||
"author": "", | ||
"license": "ISC", | ||
"dependencies": { | ||
"@aidbox/sdk-r4": "^1.0.12", | ||
"dotenv": "^16.3.1", | ||
"fastify": "^4.21.0", | ||
"fastify-healthcheck": "^4.4.0", | ||
"formdata-node": "^2.4.0", | ||
"valibot": "^0.30.0" | ||
}, | ||
"devDependencies": { | ||
"@types/node": "^18.17.5", | ||
"nodemon": "^3.0.1", | ||
"prettier": "^3.0.2", | ||
"ts-node": "^10.9.1", | ||
"typescript": "^5.1.6" | ||
}, | ||
"packageManager": "pnpm@9.1.0+sha512.67f5879916a9293e5cf059c23853d571beaf4f753c707f40cb22bed5fb1578c6aad3b6c4107ccb3ba0b35be003eb621a16471ac836c87beb53f9d54bb4612724" | ||
} |
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