.gitignore

# Complied python modules
*.pyc

# Setuptools distribution folder.
/dist/

# Python egg metadata, regenerated from source files by setuptools.
/*.egg-info

# Hidden files and directories
*.DS_Store

# pypi build folder
/build/
SigProfilerMatrixGenerator/version.py
SigProfilerMatrixGenerator/references/chromosomes/tsb/
SigProfilerMatrixGenerator/references/vcf_files/*_bench/input/
SigProfilerMatrixGenerator/references/vcf_files/*_bench/output/
SigProfilerMatrixGenerator/references/vcf_files/*_bench/logs/
SigProfilerMatrixGenerator/references/tests/*/input/
SigProfilerMatrixGenerator/references/tests/*/logs/
SigProfilerMatrixGenerator/references/tests/*/output/
SigProfilerMatrixGenerator/install.log

# SV Example Files
SigProfilerMatrixGenerator/references/SV/example_output/*
SigProfilerMatrixGenerator/references/SV/example_input/VCF/*.tsv
SigProfilerMatrixGenerator/references/SV/example_input/VCF/*.bedpe