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reciterAnalysis.sql
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DROP TABLE IF EXISTS `personArticleScopusTargetAuthorAffiliation`;
DROP TABLE IF EXISTS `personArticleScopusNonTargetAuthorAffiliation`;
DROP TABLE IF EXISTS `personArticleRelationship`;
DROP TABLE IF EXISTS `personArticleGrant`;
DROP TABLE IF EXISTS `personArticleDepartment`;
DROP TABLE IF EXISTS `personArticleAuthor`;
DROP TABLE IF EXISTS `personArticle`;
DROP TABLE IF EXISTS `person`;
DROP TABLE IF EXISTS `personArticleKeyword`;
CREATE TABLE IF NOT EXISTS `person` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`personIdentifier` varchar(128) NOT NULL,
`firstName` varchar(128) DEFAULT NULL,
`middleName` varchar(128) DEFAULT NULL,
`lastName` varchar(128) DEFAULT NULL,
`title` varchar(200) DEFAULT NULL,
`primaryEmail` varchar(200) DEFAULT NULL,
`primaryOrganizationalUnit` varchar(200) DEFAULT NULL,
`primaryInstitution` varchar(200) DEFAULT NULL,
`dateAdded` varchar(200) DEFAULT NULL,
`dateUpdated` varchar(128) DEFAULT NULL,
`precision` float DEFAULT 0,
`recall` float DEFAULT 0,
`countSuggestedArticles` int(11) DEFAULT 0,
`countPendingArticles` int(11) DEFAULT 0,
`overallAccuracy` float DEFAULT 0,
`mode` varchar(128) DEFAULT NULL,
PRIMARY KEY (`id`,`personIdentifier`),
KEY `id` (`id`)
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8mb4;
CREATE TABLE IF NOT EXISTS `personPersonType` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`personIdentifier` varchar(128) DEFAULT NULL,
`personType` varchar(128) DEFAULT NULL,
PRIMARY KEY (`id`),
KEY `idx_personIdentifier` (`personIdentifier`) USING BTREE,
KEY `idx_personType` (`personType`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8mb4;
CREATE TABLE IF NOT EXISTS `personArticle` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`personIdentifier` varchar(128) DEFAULT NULL,
`pmid` int(11) DEFAULT 0,
`pmcid` varchar(20) DEFAULT NULL,
`totalArticleScoreStandardized` int(11) DEFAULT 0,
`totalArticleScoreNonStandardized` float DEFAULT 0,
`userAssertion` varchar(128) DEFAULT NULL,
`publicationDateDisplay` varchar(200) DEFAULT NULL,
`publicationDateStandardized` varchar(128) DEFAULT NULL,
`publicationTypeCanonical` varchar(128) DEFAULT NULL,
`scopusDocID` varchar(128) DEFAULT NULL,
`journalTitleVerbose` varchar(2000) DEFAULT 'NULL',
`articleTitle` varchar(5000) DEFAULT '''NULL''',
`feedbackScoreAccepted` float DEFAULT NULL,
`feedbackScoreRejected` float DEFAULT NULL,
`feedbackScoreNull` float DEFAULT NULL,
`articleAuthorNameFirstName` varchar(128) DEFAULT '''NULL''',
`articleAuthorNameLastName` varchar(128) DEFAULT '''NULL''',
`institutionalAuthorNameFirstName` varchar(128) DEFAULT '''NULL''',
`institutionalAuthorNameMiddleName` varchar(128) DEFAULT '''NULL''',
`institutionalAuthorNameLastName` varchar(128) DEFAULT '''NULL''',
`nameMatchFirstScore` float DEFAULT 0,
`nameMatchFirstType` varchar(128) DEFAULT 'NULL',
`nameMatchMiddleScore` float DEFAULT 0,
`nameMatchMiddleType` varchar(128) DEFAULT 'NULL',
`nameMatchLastScore` float DEFAULT 0,
`nameMatchLastType` varchar(128) DEFAULT 'NULL',
`nameMatchModifierScore` float DEFAULT 0,
`nameScoreTotal` float DEFAULT 0,
`emailMatch` varchar(128) DEFAULT NULL,
`emailMatchScore` float DEFAULT NULL,
`journalSubfieldScienceMetrixLabel` varchar(128) DEFAULT 'NULL',
`journalSubfieldScienceMetrixID` varchar(128) DEFAULT NULL,
`journalSubfieldDepartment` varchar(128) DEFAULT NULL,
`journalSubfieldScore` float DEFAULT 0,
`relationshipEvidenceTotalScore` float DEFAULT 0,
`relationshipMinimumTotalScore` float DEFAULT 0,
`relationshipNonMatchCount` int(11) DEFAULT 0,
`relationshipNonMatchScore` float DEFAULT 0,
`articleYear` int(11) DEFAULT 0,
`identityBachelorYear` varchar(128) DEFAULT 'NULL',
`discrepancyDegreeYearBachelor` int(11) DEFAULT 0,
`discrepancyDegreeYearBachelorScore` float DEFAULT 0,
`identityDoctoralYear` varchar(128) DEFAULT NULL,
`discrepancyDegreeYearDoctoral` int(11) DEFAULT 0,
`discrepancyDegreeYearDoctoralScore` float DEFAULT 0,
`genderScoreArticle` float DEFAULT 0,
`genderScoreIdentity` float DEFAULT 0,
`genderScoreIdentityArticleDiscrepancy` float DEFAULT 0,
`personType` varchar(128) DEFAULT NULL,
`personTypeScore` float DEFAULT NULL,
`countArticlesRetrieved` int(11) DEFAULT 0,
`articleCountScore` float DEFAULT 0,
`targetAuthorInstitutionalAffiliationArticlePubmedLabel` text DEFAULT NULL,
`pubmedTargetAuthorInstitutionalAffiliationMatchTypeScore` float DEFAULT NULL,
`scopusNonTargetAuthorInstitutionalAffiliationSource` varchar(128) DEFAULT '''''''NULL''''''',
`scopusNonTargetAuthorInstitutionalAffiliationScore` float DEFAULT 0,
`totalArticleScoreWithoutClustering` float DEFAULT 0,
`clusterScoreAverage` float DEFAULT 0,
`clusterReliabilityScore` float DEFAULT 0,
`clusterScoreModificationOfTotalScore` float DEFAULT 0,
`datePublicationAddedToEntrez` varchar(128) DEFAULT NULL,
`clusterIdentifier` int(11) DEFAULT NULL,
`doi` varchar(128) DEFAULT NULL,
`issn` varchar(128) DEFAULT NULL,
`issue` varchar(500) DEFAULT 'NULL',
`journalTitleISOabbreviation` varchar(128) DEFAULT NULL,
`pages` varchar(500) DEFAULT 'NULL',
`timesCited` int(11) DEFAULT NULL,
`volume` varchar(500) DEFAULT 'NULL',
PRIMARY KEY (`id`),
KEY `idx_issn` (`issn`) USING BTREE,
KEY `idx_scopusDocID` (`scopusDocID`) USING BTREE,
KEY `idx_doi` (`doi`) USING BTREE,
KEY `idx_pmid` (`pmid`) USING BTREE,
KEY `personIdentifier` (`personIdentifier`,`pmid`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8mb4;
CREATE TABLE IF NOT EXISTS `personArticleAuthor` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`personIdentifier` varchar(128) DEFAULT NULL,
`pmid` int(11) DEFAULT 0,
`authorFirstName` varchar(128) DEFAULT '''NULL''',
`authorLastName` varchar(150) DEFAULT '''NULL''',
`targetAuthor` varchar(128) DEFAULT '''NULL''',
`rank` int(11) DEFAULT 0,
`orcid` varchar(50) DEFAULT NULL,
PRIMARY KEY (`id`),
KEY `personIdentifier` (`personIdentifier`,`pmid`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=4511639 DEFAULT CHARSET=utf8mb4;
CREATE TABLE IF NOT EXISTS `personArticleDepartment` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`personIdentifier` varchar(128) DEFAULT NULL,
`pmid` int(11) DEFAULT 0,
`identityOrganizationalUnit` varchar(128) DEFAULT NULL,
`articleAffiliation` varchar(10000) DEFAULT 'NULL',
`organizationalUnitType` varchar(128) DEFAULT NULL,
`organizationalUnitMatchingScore` float DEFAULT 0,
`organizationalUnitModifier` varchar(128) DEFAULT NULL,
`organizationalUnitModifierScore` float DEFAULT 0,
PRIMARY KEY (`id`),
KEY `personIdentifier` (`personIdentifier`,`pmid`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8mb4;
CREATE TABLE IF NOT EXISTS `personArticleGrant` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`personIdentifier` varchar(128) DEFAULT NULL,
`pmid` int(11) DEFAULT 0,
`articleGrant` varchar(128) DEFAULT NULL,
`grantMatchScore` float DEFAULT 0,
`institutionGrant` varchar(128) DEFAULT NULL,
PRIMARY KEY (`id`)
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8mb4;
CREATE TABLE IF NOT EXISTS `personArticleRelationship` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`personIdentifier` varchar(128) DEFAULT NULL,
`pmid` int(11) DEFAULT 0,
`relationshipNameArticleFirstName` varchar(128) DEFAULT '''NULL''',
`relationshipNameArticleLastName` varchar(128) DEFAULT '''NULL''',
`relationshipNameIdentityFirstName` varchar(128) DEFAULT '''NULL''',
`relationshipNameIdentityLastName` varchar(128) DEFAULT '''NULL''',
`relationshipType` varchar(128) DEFAULT NULL,
`relationshipMatchType` varchar(128) DEFAULT NULL,
`relationshipMatchingScore` float DEFAULT 0,
`relationshipVerboseMatchModifierScore` float DEFAULT 0,
`relationshipMatchModifierMentor` float DEFAULT NULL,
`relationshipMatchModifierMentorSeniorAuthor` float DEFAULT NULL,
`relationshipMatchModifierManager` float DEFAULT NULL,
`relationshipMatchModifierManagerSeniorAuthor` float DEFAULT NULL,
PRIMARY KEY (`id`),
KEY `personIdentifier` (`personIdentifier`,`pmid`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8mb4;
CREATE TABLE IF NOT EXISTS `personArticleScopusNonTargetAuthorAffiliation` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`personIdentifier` varchar(128) DEFAULT NULL,
`pmid` int(11) DEFAULT NULL,
`nonTargetAuthorInstitutionLabel` varchar(128) DEFAULT 'NULL',
`nonTargetAuthorInstitutionID` varchar(128) DEFAULT 'NULL',
`nonTargetAuthorInstitutionCount` int(11) DEFAULT 0,
PRIMARY KEY (`id`),
KEY `personIdentifier` (`personIdentifier`,`pmid`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8mb4;
CREATE TABLE IF NOT EXISTS `personArticleScopusTargetAuthorAffiliation` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`personIdentifier` varchar(128) DEFAULT NULL,
`pmid` int(11) DEFAULT 0,
`targetAuthorInstitutionalAffiliationSource` varchar(128) DEFAULT 'NULL',
`scopusTargetAuthorInstitutionalAffiliationIdentity` varchar(128) DEFAULT NULL,
`targetAuthorInstitutionalAffiliationArticleScopusLabel` varchar(2000) DEFAULT '''NULL''',
`targetAuthorInstitutionalAffiliationArticleScopusAffiliationId` varchar(128) DEFAULT 'NULL',
`targetAuthorInstitutionalAffiliationMatchType` varchar(128) DEFAULT NULL,
`targetAuthorInstitutionalAffiliationMatchTypeScore` float DEFAULT 0,
PRIMARY KEY (`id`),
KEY `personIdentifier` (`personIdentifier`,`pmid`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8mb4;
CREATE TABLE `personArticleKeyword` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`personIdentifier` varchar(128) DEFAULT NULL,
`pmid` int(11) DEFAULT 0,
`keyword` varchar(128) DEFAULT NULL,
PRIMARY KEY (`id`),
KEY `sdfsdfsdf` (`personIdentifier`,`pmid`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=1615411 DEFAULT CHARSET=utf8mb4;
CREATE TABLE IF NOT EXISTS `altmetric` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`doi` varchar(128) DEFAULT NULL,
`pmid` int(11) DEFAULT NULL,
`altmetric_jid` varchar(128) DEFAULT NULL,
`context-all-count` int(11) DEFAULT NULL,
`context-all-mean` float(10,4) DEFAULT NULL,
`context-all-rank` int(11) DEFAULT NULL,
`context-all-pct` int(11) DEFAULT NULL,
`context-all-higher_than` int(11) DEFAULT NULL,
`context-similar_age_3m-count` int(11) DEFAULT 0,
`context-similar_age_3m-mean` float(10,4) DEFAULT 0.0000,
`context-similar_age_3m-rank` int(11) DEFAULT 0,
`context-similar_age_3m-pct` int(11) DEFAULT 0,
`context-similar_age_3m-higher_than` int(11) DEFAULT 0,
`altmetric_id` int(11) DEFAULT NULL,
`cited_by_msm_count` int(11) DEFAULT NULL,
`is_oa` varchar(12) DEFAULT NULL,
`cited_by_posts_count` int(11) DEFAULT NULL,
`cited_by_tweeters_count` int(11) DEFAULT NULL,
`cited_by_feeds_count` int(11) DEFAULT NULL,
`cited_by_fbwalls_count` int(11) DEFAULT NULL,
`cited_by_rh_count` int(11) DEFAULT NULL,
`cited_by_accounts_count` int(11) DEFAULT NULL,
`last_updated` int(11) DEFAULT NULL,
`score` float(10,4) DEFAULT NULL,
`history-1y` float(10,4) DEFAULT NULL,
`history-6m` float(10,4) DEFAULT NULL,
`history-3m` float(10,4) DEFAULT NULL,
`history-1m` float(10,4) DEFAULT NULL,
`history-1w` float(10,4) DEFAULT NULL,
`history-at` float(10,4) DEFAULT NULL,
`added_on` int(11) DEFAULT NULL,
`published_on` int(11) DEFAULT NULL,
`readers-mendeley` int(11) DEFAULT NULL,
`createTimestamp` timestamp NULL DEFAULT current_timestamp(),
PRIMARY KEY (`id`),
KEY `y` (`doi`) USING BTREE,
KEY `x` (`pmid`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8mb4;
CREATE TABLE IF NOT EXISTS `analysis_rcr` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`pmid` int(11) DEFAULT 0,
`year` int(11) DEFAULT NULL,
`is_research_article` varchar(11) DEFAULT NULL,
`is_clinical` varchar(11) DEFAULT NULL,
`relative_citation_ratio` float(6,2) DEFAULT NULL,
`nih_percentile` float(5,2) DEFAULT NULL,
`citation_count` int(11) DEFAULT NULL,
`citations_per_year` float(7,3) DEFAULT NULL,
`expected_citations_per_year` float(7,3) DEFAULT NULL,
`field_citation_rate` float(7,3) DEFAULT NULL,
`provisional` varchar(12) DEFAULT NULL,
`doi` varchar(150) DEFAULT NULL,
`human` float(4,2) DEFAULT NULL,
`animal` float(4,2) DEFAULT NULL,
`molecular_cellular` float(4,2) DEFAULT NULL,
`apt` float(4,2) DEFAULT NULL,
`x_coord` float(5,4) DEFAULT NULL,
`y_coord` float(5,4) DEFAULT NULL,
PRIMARY KEY (`id`),
KEY `sdfsdfsdf` (`pmid`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8;
CREATE TABLE IF NOT EXISTS `analysis_rcr_cites` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`citing_pmid` int(11) DEFAULT 0,
`cited_pmid` int(11) DEFAULT NULL,
PRIMARY KEY (`id`),
KEY `y` (`cited_pmid`) USING BTREE,
KEY `x` (`citing_pmid`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8;
CREATE TABLE IF NOT EXISTS `analysis_rcr_cites_clin` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`citing_pmid` int(11) DEFAULT 0,
`cited_pmid` int(11) DEFAULT NULL,
PRIMARY KEY (`id`),
KEY `y` (`cited_pmid`) USING BTREE,
KEY `x` (`citing_pmid`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8;
CREATE TABLE IF NOT EXISTS `analysis_rcr_summary` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`personIdentifier` varchar(20) DEFAULT NULL,
`nameFirst` varchar(128) DEFAULT NULL,
`nameMiddle` varchar(128) DEFAULT NULL,
`nameLast` varchar(128) DEFAULT NULL,
`facultyRank` varchar(25) DEFAULT NULL,
`department` varchar(128) DEFAULT NULL,
`division` varchar(128) DEFAULT NULL,
`countAll` int(11) DEFAULT 0,
`countFirst` int(11) DEFAULT 0,
`countSenior` int(11) DEFAULT 0,
`top10PercentileAll` float(6,3) DEFAULT NULL,
`top10RankAll` int(11) DEFAULT NULL,
`top10DenominatorAll` int(11) DEFAULT NULL,
`top5PercentileAll` float(7,3) DEFAULT NULL,
`top5RankAll` int(11) DEFAULT NULL,
`top5DenominatorAll` int(11) DEFAULT NULL,
`top10PercentileFirst` float(6,3) DEFAULT NULL,
`top10RankFirst` int(11) DEFAULT NULL,
`top10DenominatorFirst` int(11) DEFAULT NULL,
`top5PercentileFirst` float(7,3) DEFAULT NULL,
`top5RankFirst` int(11) DEFAULT NULL,
`top5DenominatorFirst` int(11) DEFAULT NULL,
`top10PercentileSenior` float(6,3) DEFAULT NULL,
`top10RankSenior` int(11) DEFAULT NULL,
`top10DenominatorSenior` int(11) DEFAULT NULL,
`top5PercentileSenior` float(7,3) DEFAULT NULL,
`top5RankSenior` int(11) DEFAULT NULL,
`top5DenominatorSenior` int(11) DEFAULT NULL,
`top10PercentileFirstSenior` float(6,3) DEFAULT NULL,
`top10RankFirstSenior` int(11) DEFAULT NULL,
`top10DenominatorFirstSenior` int(11) DEFAULT NULL,
`top5PercentileFirstSenior` float(7,3) DEFAULT NULL,
`top5RankFirstSenior` int(11) DEFAULT NULL,
`top5DenominatorFirstSenior` int(11) DEFAULT NULL,
PRIMARY KEY (`id`)
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8;
CREATE TABLE IF NOT EXISTS `analysis_rcr_year` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`personIdentifier` varchar(20) DEFAULT NULL,
`year` int(11) NOT NULL DEFAULT 0,
`aggregateRCR` float(5,2) DEFAULT 0.00,
`personLabel` varchar(128) DEFAULT NULL,
PRIMARY KEY (`id`),
KEY `idx_personIdentifier` (`personIdentifier`) USING BTREE,
KEY `idx_year` (`year`) USING BTREE
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8mb4