From 2cde6349293ba4e5f47fa2a013814d3ed225181d Mon Sep 17 00:00:00 2001 From: Anselm Hahn Date: Tue, 31 Oct 2023 06:32:48 +0100 Subject: [PATCH] feat: Created using Colaboratory (#71) * feat: Created using Colaboratory * docs: Update and add links Add links to Colab Notebook --- README.md | 9 +- Tanabe_Sugano.ipynb | 1052 +++++++++++++++++++++++++++++++++++++++++++ poetry.lock | 1040 ++++++++++++++++++++++++------------------ 3 files changed, 1667 insertions(+), 434 deletions(-) create mode 100644 Tanabe_Sugano.ipynb diff --git a/README.md b/README.md index cf9f650..1169736 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,5 @@ -[![Python package](https://github.com/Anselmoo/TanabeSugano/workflows/Python%20package/badge.svg)](https://github.com/Anselmoo/TanabeSugano/actions?query=workflow%3A%22Python+package%22) +[![Python Package](https://github.com/Anselmoo/TanabeSugano/actions/workflows/python-package.yml/badge.svg)](https://github.com/Anselmoo/TanabeSugano/actions/workflows/python-package.yml) +[![Poetry](https://img.shields.io/endpoint?url=https://python-poetry.org/badge/v0.json)](https://python-poetry.org/) [![CodeFactor](https://www.codefactor.io/repository/github/anselmoo/tanabesugano/badge)](https://www.codefactor.io/repository/github/anselmoo/tanabesugano) [![DOI](https://zenodo.org/badge/206847682.svg)](https://zenodo.org/badge/latestdoi/206847682) [![GitHub](https://img.shields.io/github/license/Anselmoo/TanabeSugano)](https://github.com/Anselmoo/TanabeSugano/blob/master/LICENSE) @@ -6,6 +7,8 @@ [![PyPI](https://img.shields.io/pypi/v/TanabeSugano?logo=Pypi&logoColor=yellow)](https://pypi.org/project/TanabeSugano/) [![PyPI - Python Version](https://img.shields.io/pypi/pyversions/TanabeSugano?logo=Python&logoColor=yellow)](https://pypi.org/project/TanabeSugano/) [![Downloads](https://static.pepy.tech/badge/tanabesugano)](https://pepy.tech/project/tanabesugano) +[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/Anselmoo/TanabeSugano/blob/feature%2Fcolab/Tanabe_Sugano.ipynb) + # TanabeSugano A python-based Eigensolver for Tanabe-Sugano- & Energy-Correlation-Diagrams based on the original three proposed studies of *Yukito Tanabe and Satoru Sugano* for d2-d8 transition metal ions: @@ -88,3 +91,7 @@ The options for the **TanabeSugano**-application are: **Reference-Example** for d6 for *F2 = 1065 cm-* and *F4 = 5120 cm-* as interactive `plotly`-plot: ![placeholder](https://github.com/Anselmoo/TanabeSugano/blob/master/examples/d6_ts_interactive.gif?raw=true) + +## Test the TS-diagrams interactively in Google Colab + +[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/Anselmoo/TanabeSugano/blob/feature%2Fcolab/Tanabe_Sugano.ipynb) diff --git a/Tanabe_Sugano.ipynb b/Tanabe_Sugano.ipynb new file mode 100644 index 0000000..73605b5 --- /dev/null +++ b/Tanabe_Sugano.ipynb @@ -0,0 +1,1052 @@ +{ + "nbformat": 4, + "nbformat_minor": 0, + "metadata": { + "colab": { + "provenance": [], + "toc_visible": true, + "authorship_tag": "ABX9TyOWuW1akHVvuTtAHEnAGXEP", + "include_colab_link": true + }, + "kernelspec": { + "name": "python3", + "display_name": "Python 3" + }, + "language_info": { + "name": "python" + } + }, + "cells": [ + { + "cell_type": "markdown", + "metadata": { + "id": "view-in-github", + "colab_type": "text" + }, + "source": [ + "\"Open" + ] + }, + { + "cell_type": "markdown", + "source": [ + "# Tanabe Sugano" + ], + "metadata": { + "id": "DhqxZDpQDrkJ" + } + }, + { + "cell_type": "code", + "source": [ + "!pip install TanabeSugano" + ], + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "t3apglamEr8N", + "outputId": "6188d49d-25b8-428c-f7ab-b1095bc61321" + }, + "execution_count": 2, + "outputs": [ + { + "output_type": "stream", + "name": "stdout", + "text": [ + "Collecting TanabeSugano\n", + " Downloading tanabesugano-1.4.1-py3-none-any.whl (16 kB)\n", + "Requirement already satisfied: matplotlib<4.0.0,>=3.4.2 in /usr/local/lib/python3.10/dist-packages (from TanabeSugano) (3.7.1)\n", + "Requirement already satisfied: numpy<2.0.0,>=1.20.3 in /usr/local/lib/python3.10/dist-packages (from TanabeSugano) (1.23.5)\n", + "Requirement already satisfied: pandas<2.0.0,>=1.2.4 in /usr/local/lib/python3.10/dist-packages (from TanabeSugano) (1.5.3)\n", + "Collecting prettytable<3.0.0,>=2.1.0 (from TanabeSugano)\n", + " Downloading prettytable-2.5.0-py3-none-any.whl (24 kB)\n", + "Requirement already satisfied: contourpy>=1.0.1 in /usr/local/lib/python3.10/dist-packages (from matplotlib<4.0.0,>=3.4.2->TanabeSugano) (1.1.1)\n", + "Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.10/dist-packages (from matplotlib<4.0.0,>=3.4.2->TanabeSugano) (0.12.1)\n", + "Requirement already satisfied: fonttools>=4.22.0 in /usr/local/lib/python3.10/dist-packages (from matplotlib<4.0.0,>=3.4.2->TanabeSugano) (4.43.1)\n", + "Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.10/dist-packages (from matplotlib<4.0.0,>=3.4.2->TanabeSugano) (1.4.5)\n", + "Requirement already satisfied: packaging>=20.0 in /usr/local/lib/python3.10/dist-packages (from matplotlib<4.0.0,>=3.4.2->TanabeSugano) (23.2)\n", + "Requirement already satisfied: pillow>=6.2.0 in /usr/local/lib/python3.10/dist-packages (from matplotlib<4.0.0,>=3.4.2->TanabeSugano) (9.4.0)\n", + "Requirement already satisfied: pyparsing>=2.3.1 in /usr/local/lib/python3.10/dist-packages (from matplotlib<4.0.0,>=3.4.2->TanabeSugano) (3.1.1)\n", + "Requirement already satisfied: python-dateutil>=2.7 in /usr/local/lib/python3.10/dist-packages (from matplotlib<4.0.0,>=3.4.2->TanabeSugano) (2.8.2)\n", + "Requirement already satisfied: pytz>=2020.1 in /usr/local/lib/python3.10/dist-packages (from pandas<2.0.0,>=1.2.4->TanabeSugano) (2023.3.post1)\n", + "Requirement already satisfied: wcwidth in /usr/local/lib/python3.10/dist-packages (from prettytable<3.0.0,>=2.1.0->TanabeSugano) (0.2.8)\n", + "Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.10/dist-packages (from python-dateutil>=2.7->matplotlib<4.0.0,>=3.4.2->TanabeSugano) (1.16.0)\n", + "Installing collected packages: prettytable, TanabeSugano\n", + " Attempting uninstall: prettytable\n", + " Found existing installation: prettytable 3.9.0\n", + " Uninstalling prettytable-3.9.0:\n", + " Successfully uninstalled prettytable-3.9.0\n", + "Successfully installed TanabeSugano-1.4.1 prettytable-2.5.0\n" + ] + } + ] + }, + { + "cell_type": "code", + "source": [ + "from tanabesugano.cmd import CMDmain\n", + "import plotly.express as px\n", + "import pandas as pd" + ], + "metadata": { + "id": "7ePe7UcqEz-1" + }, + "execution_count": 9, + "outputs": [] + }, + { + "cell_type": "code", + "source": [ + "def interactive_plot(df: pd.DataFrame, B: float) -> None:\n", + " \"\"\"Interactive plot for the tanabe-sugano-diagram.\"\"\"\n", + " if px is None:\n", + " raise ImportError(\n", + " \"Plotly is not installed. Please install plotly \"\n", + " \"with 'pip install tanabesugano[plotly]'!\"\n", + " )\n", + "\n", + " _col = df.drop([\"Energy\", \"delta_B\", \"10Dq\"], axis=1).columns\n", + " _font = dict(family=\"Avant Garde, sans-serif\", size=12, color=\"grey\")\n", + " _template = \"plotly_white\"\n", + " _size = dict(\n", + " autosize=False,\n", + " width=800,\n", + " height=800,\n", + " )\n", + " color_discrete_sequence = [\n", + " px.colors.qualitative.Light24[int(i[0]) - 1] for i in _col\n", + " ]\n", + "\n", + " _df = df.copy()\n", + "\n", + " fig_1 = px.line(\n", + " _df,\n", + " x=\"10Dq\",\n", + " y=_col,\n", + " title=\"Energy-Correlation-Diagram\",\n", + " labels={\n", + " \"variable\": \"State\",\n", + " \"value\": \"Energy (cm-1)\",\n", + " \"10Dq\": \"10Dq (cm-1)\",\n", + " },\n", + " color_discrete_sequence=color_discrete_sequence,\n", + " )\n", + " fig_1.update_layout(\n", + " xaxis_title=\"10Dq (cm-1)\",\n", + " yaxis_title=\"dd-states (cm-1)\",\n", + " legend_title=\"State\",\n", + " template=_template,\n", + " font=_font,\n", + " **_size,\n", + " )\n", + "\n", + " # Apply / self.B to every column except for _col\n", + " _df[_col] = _df[_col].div(B, axis=0)\n", + "\n", + " # Plot the tanabe-sugano-diagram\n", + " fig_2 = px.line(\n", + " _df,\n", + " x=\"delta_B\",\n", + " y=_col,\n", + " title=\"Tanabe-Sugano-Diagram\",\n", + " labels={\n", + " \"variable\": \"State\",\n", + " \"value\": \" E / B\",\n", + " \"delta_B\": \"Δ / B\",\n", + " },\n", + " color_discrete_sequence=color_discrete_sequence,\n", + " )\n", + " fig_2.update_layout(\n", + " xaxis_title=\"Δ / B\",\n", + " yaxis_title=\"E / B\",\n", + " legend_title=\"State\",\n", + " template=_template,\n", + " font=_font,\n", + " **_size,\n", + " )\n", + " return fig_1, fig_2" + ], + "metadata": { + "id": "bzxSD_upGosy" + }, + "execution_count": 10, + "outputs": [] + }, + { + "cell_type": "markdown", + "source": [ + "## d2\n", + "---" + ], + "metadata": { + "id": "oODgaLNoDvfM" + } + }, + { + "cell_type": "code", + "source": [ + "cmd = CMDmain(d_count=2)\n", + "cmd.calculation()\n", + "fig_1, fig_2 = interactive_plot(cmd.df, cmd.B)\n", + "fig_1.show()" + ], + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 817 + }, + "id": "xqIS1rQtF9bI", + "outputId": "9b1a91a6-b17c-432d-e25d-db4e259f06de" + }, + "execution_count": 12, + "outputs": [ + { + "output_type": "display_data", + "data": { + "text/html": [ + "\n", + "\n", + "\n", + "
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