From ee75eef819df7ee50c882187b04c2ac56c81bdaa Mon Sep 17 00:00:00 2001 From: Virgile Andreani Date: Fri, 13 Dec 2024 14:30:15 +0100 Subject: [PATCH] deps: upgrade pyo3 to 0.23 --- Cargo.lock | 161 ++++++++++++++++++++++++++++------------------------- Cargo.toml | 4 +- 2 files changed, 87 insertions(+), 78 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 8fc4843..9d40288 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -1,6 +1,6 @@ # This file is automatically @generated by Cargo. # It is not intended for manual editing. -version = 3 +version = 4 [[package]] name = "aho-corasick" @@ -19,15 +19,15 @@ checksum = "4b46cbb362ab8752921c97e041f5e366ee6297bd428a31275b9fcf1e380f7299" [[package]] name = "anstyle" -version = "1.0.8" +version = "1.0.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1bec1de6f59aedf83baf9ff929c98f2ad654b97c9510f4e70cf6f661d49fd5b1" +checksum = "55cc3b69f167a1ef2e161439aa98aed94e6028e5f9a59be9a6ffb47aef1651f9" [[package]] name = "autocfg" -version = "1.3.0" +version = "1.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0c4b4d0bd25bd0b74681c0ad21497610ce1b7c91b1022cd21c80c6fbdd9476b0" +checksum = "ace50bade8e6234aa140d9a2f552bbee1db4d353f69b8217bc503490fc1a9f26" [[package]] name = "bincode" @@ -58,9 +58,9 @@ checksum = "37b2a672a2cb129a2e41c10b1224bb368f9f37a2b16b612598138befd7b37eb5" [[package]] name = "cc" -version = "1.1.21" +version = "1.2.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "07b1695e2c7e8fc85310cde85aeaab7e3097f593c91d209d3f9df76c928100f0" +checksum = "9157bbaa6b165880c27a4293a474c91cdcf265cc68cc829bf10be0964a391caf" dependencies = [ "shlex", ] @@ -100,18 +100,18 @@ dependencies = [ [[package]] name = "clap" -version = "4.5.18" +version = "4.5.23" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b0956a43b323ac1afaffc053ed5c4b7c1f1800bacd1683c353aabbb752515dd3" +checksum = "3135e7ec2ef7b10c6ed8950f0f792ed96ee093fa088608f1c76e569722700c84" dependencies = [ "clap_builder", ] [[package]] name = "clap_builder" -version = "4.5.18" +version = "4.5.23" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4d72166dd41634086d5803a47eb71ae740e61d84709c36f3c34110173db3961b" +checksum = "30582fc632330df2bd26877bde0c1f4470d57c582bbc070376afcd04d8cb4838" dependencies = [ "anstyle", "clap_lex", @@ -119,9 +119,9 @@ dependencies = [ [[package]] name = "clap_lex" -version = "0.7.2" +version = "0.7.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1462739cb27611015575c0c11df5df7601141071f07518d56fcc1be504cbec97" +checksum = "f46ad14479a25103f283c0f10005961cf086d8dc42205bb44c46ac563475dca6" [[package]] name = "criterion" @@ -192,9 +192,18 @@ checksum = "7a81dae078cea95a014a339291cec439d2f232ebe854a9d672b796c6afafa9b7" [[package]] name = "derive_more" -version = "0.99.18" +version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5f33878137e4dafd7fa914ad4e259e18a4e8e532b9617a2d0150262bf53abfce" +checksum = "4a9b99b9cbbe49445b21764dc0625032a89b145a2642e67603e1c936f5458d05" +dependencies = [ + "derive_more-impl", +] + +[[package]] +name = "derive_more-impl" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "cb7330aeadfbe296029522e6c40f315320aba36fc43a5b3632f3795348f3bd22" dependencies = [ "proc-macro2", "quote", @@ -242,9 +251,9 @@ checksum = "fbf6a919d6cf397374f7dfeeea91d974c7c0a7221d0d0f4f20d859d329e53fcc" [[package]] name = "iai-callgrind" -version = "0.13.4" +version = "0.14.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4bd871e6374d5ca2d9b48dd23b3c7ef63a4201728621f6d75937dfcc66e91809" +checksum = "22275f8051874cd2f05b2aa1e0098d5cbec34df30ff92f1a1e2686a4cefed870" dependencies = [ "bincode", "derive_more", @@ -254,9 +263,9 @@ dependencies = [ [[package]] name = "iai-callgrind-macros" -version = "0.4.1" +version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "397649417510422ded7033f86132f833cca8c2e5081d0dfbec939b2353da7021" +checksum = "e8e6677dc52bd798b988e62ffd6831bf7eb46e4348cb1c74c1164954ebd0e5a1" dependencies = [ "derive_more", "proc-macro-error2", @@ -269,9 +278,9 @@ dependencies = [ [[package]] name = "iai-callgrind-runner" -version = "0.13.4" +version = "0.14.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f3783c337f9e931af702b5d5835ff2a6824bf55e416461a4e042dfb4b8fdbbea" +checksum = "a02dd95fe4949513b45a328b5b18f527ee02e96f3428b48090aa7cf9043ab0b8" dependencies = [ "serde", ] @@ -304,30 +313,31 @@ dependencies = [ [[package]] name = "itoa" -version = "1.0.11" +version = "1.0.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "49f1f14873335454500d59611f1cf4a4b0f786f9ac11f4312a78e4cf2566695b" +checksum = "d75a2a4b1b190afb6f5425f10f6a8f959d2ea0b9c2b1d79553551850539e4674" [[package]] name = "js-sys" -version = "0.3.70" +version = "0.3.76" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1868808506b929d7b0cfa8f75951347aa71bb21144b7791bae35d9bccfcfe37a" +checksum = "6717b6b5b077764fb5966237269cb3c64edddde4b14ce42647430a78ced9e7b7" dependencies = [ + "once_cell", "wasm-bindgen", ] [[package]] name = "libc" -version = "0.2.159" +version = "0.2.168" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "561d97a539a36e26a9a5fad1ea11a3039a67714694aaa379433e580854bc3dc5" +checksum = "5aaeb2981e0606ca11d79718f8bb01164f1d6ed75080182d3abf017e6d244b6d" [[package]] name = "libm" -version = "0.2.8" +version = "0.2.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4ec2a862134d2a7d32d7983ddcdd1c4923530833c9f2ea1a44fc5fa473989058" +checksum = "8355be11b20d696c8f18f6cc018c4e372165b1fa8126cef092399c9951984ffa" [[package]] name = "log" @@ -362,9 +372,9 @@ dependencies = [ [[package]] name = "once_cell" -version = "1.19.0" +version = "1.20.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3fdb12b2476b595f9358c5161aa467c2438859caa136dec86c26fdd2efe17b92" +checksum = "1261fe7e33c73b354eab43b1273a57c8f967d0391e80353e51f764ac02cf6775" [[package]] name = "oorandom" @@ -402,9 +412,9 @@ dependencies = [ [[package]] name = "portable-atomic" -version = "1.8.0" +version = "1.10.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d30538d42559de6b034bc76fd6dd4c38961b1ee5c6c56e3808c50128fdbc22ce" +checksum = "280dc24453071f1b63954171985a0b0d30058d287960968b9b2aca264c8d4ee6" [[package]] name = "ppv-lite86" @@ -439,18 +449,18 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.86" +version = "1.0.92" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5e719e8df665df0d1c8fbfd238015744736151d4445ec0836b8e628aae103b77" +checksum = "37d3544b3f2748c54e147655edb5025752e2303145b5aefb3c3ea2c78b973bb0" dependencies = [ "unicode-ident", ] [[package]] name = "pyo3" -version = "0.22.3" +version = "0.23.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "15ee168e30649f7f234c3d49ef5a7a6cbf5134289bc46c29ff3155fa3221c225" +checksum = "e484fd2c8b4cb67ab05a318f1fd6fa8f199fcc30819f08f07d200809dba26c15" dependencies = [ "cfg-if", "indoc", @@ -466,9 +476,9 @@ dependencies = [ [[package]] name = "pyo3-build-config" -version = "0.22.3" +version = "0.23.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e61cef80755fe9e46bb8a0b8f20752ca7676dcc07a5277d8b7768c6172e529b3" +checksum = "dc0e0469a84f208e20044b98965e1561028180219e35352a2afaf2b942beff3b" dependencies = [ "once_cell", "python3-dll-a", @@ -477,9 +487,9 @@ dependencies = [ [[package]] name = "pyo3-ffi" -version = "0.22.3" +version = "0.23.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "67ce096073ec5405f5ee2b8b31f03a68e02aa10d5d4f565eca04acc41931fa1c" +checksum = "eb1547a7f9966f6f1a0f0227564a9945fe36b90da5a93b3933fc3dc03fae372d" dependencies = [ "libc", "pyo3-build-config", @@ -487,9 +497,9 @@ dependencies = [ [[package]] name = "pyo3-macros" -version = "0.22.3" +version = "0.23.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2440c6d12bc8f3ae39f1e775266fa5122fd0c8891ce7520fa6048e683ad3de28" +checksum = "fdb6da8ec6fa5cedd1626c886fc8749bdcbb09424a86461eb8cdf096b7c33257" dependencies = [ "proc-macro2", "pyo3-macros-backend", @@ -499,9 +509,9 @@ dependencies = [ [[package]] name = "pyo3-macros-backend" -version = "0.22.3" +version = "0.23.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1be962f0e06da8f8465729ea2cb71a416d2257dff56cbe40a70d3e62a93ae5d1" +checksum = "38a385202ff5a92791168b1136afae5059d3ac118457bb7bc304c197c2d33e7d" dependencies = [ "heck", "proc-macro2", @@ -512,9 +522,9 @@ dependencies = [ [[package]] name = "python3-dll-a" -version = "0.2.10" +version = "0.2.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bd0b78171a90d808b319acfad166c4790d9e9759bbc14ac8273fe133673dd41b" +checksum = "9b9e268ee1be609e93a13eb06839f68f67e5fe0fb4049834d261c2d5091c1b6d" dependencies = [ "cc", ] @@ -601,9 +611,9 @@ dependencies = [ [[package]] name = "regex" -version = "1.10.6" +version = "1.11.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4219d74c6b67a3654a9fbebc4b419e22126d13d2f3c4a07ee0cb61ff79a79619" +checksum = "b544ef1b4eac5dc2db33ea63606ae9ffcfac26c1416a2806ae0bf5f56b201191" dependencies = [ "aho-corasick", "memchr", @@ -613,9 +623,9 @@ dependencies = [ [[package]] name = "regex-automata" -version = "0.4.7" +version = "0.4.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "38caf58cc5ef2fed281f89292ef23f6365465ed9a41b7a7754eb4e26496c92df" +checksum = "809e8dc61f6de73b46c85f4c96486310fe304c434cfa43669d7b40f711150908" dependencies = [ "aho-corasick", "memchr", @@ -624,9 +634,9 @@ dependencies = [ [[package]] name = "regex-syntax" -version = "0.8.4" +version = "0.8.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7a66a03ae7c801facd77a29370b4faec201768915ac14a721ba36f20bc9c209b" +checksum = "2b15c43186be67a4fd63bee50d0303afffcef381492ebe2c5d87f324e1b8815c" [[package]] name = "ryu" @@ -645,18 +655,18 @@ dependencies = [ [[package]] name = "serde" -version = "1.0.210" +version = "1.0.216" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c8e3592472072e6e22e0a54d5904d9febf8508f65fb8552499a1abc7d1078c3a" +checksum = "0b9781016e935a97e8beecf0c933758c97a5520d32930e460142b4cd80c6338e" dependencies = [ "serde_derive", ] [[package]] name = "serde_derive" -version = "1.0.210" +version = "1.0.216" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "243902eda00fad750862fc144cea25caca5e20d615af0a81bee94ca738f1df1f" +checksum = "46f859dbbf73865c6627ed570e78961cd3ac92407a2d117204c49232485da55e" dependencies = [ "proc-macro2", "quote", @@ -665,9 +675,9 @@ dependencies = [ [[package]] name = "serde_json" -version = "1.0.128" +version = "1.0.133" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6ff5456707a1de34e7e37f2a6fd3d3f808c318259cbd01ab6377795054b483d8" +checksum = "c7fceb2473b9166b2294ef05efcb65a3db80803f0b03ef86a5fc88a2b85ee377" dependencies = [ "itoa", "memchr", @@ -683,9 +693,9 @@ checksum = "0fda2ff0d084019ba4d7c6f371c95d8fd75ce3524c3cb8fb653a3023f6323e64" [[package]] name = "syn" -version = "2.0.77" +version = "2.0.90" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9f35bcdf61fd8e7be6caf75f429fdca8beb3ed76584befb503b1569faee373ed" +checksum = "919d3b74a5dd0ccd15aeb8f93e7006bd9e14c295087c9896a110f490752bcf31" dependencies = [ "proc-macro2", "quote", @@ -710,9 +720,9 @@ dependencies = [ [[package]] name = "unicode-ident" -version = "1.0.13" +version = "1.0.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e91b56cd4cadaeb79bbf1a5645f6b4f8dc5bde8834ad5894a8db35fda9efa1fe" +checksum = "adb9e6ca4f869e1180728b7950e35922a7fc6397f7b641499e8f3ef06e50dc83" [[package]] name = "unindent" @@ -738,9 +748,9 @@ checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423" [[package]] name = "wasm-bindgen" -version = "0.2.93" +version = "0.2.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a82edfc16a6c469f5f44dc7b571814045d60404b55a0ee849f9bcfa2e63dd9b5" +checksum = "a474f6281d1d70c17ae7aa6a613c87fce69a127e2624002df63dcb39d6cf6396" dependencies = [ "cfg-if", "once_cell", @@ -749,13 +759,12 @@ dependencies = [ [[package]] name = "wasm-bindgen-backend" -version = "0.2.93" +version = "0.2.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9de396da306523044d3302746f1208fa71d7532227f15e347e2d93e4145dd77b" +checksum = "5f89bb38646b4f81674e8f5c3fb81b562be1fd936d84320f3264486418519c79" dependencies = [ "bumpalo", "log", - "once_cell", "proc-macro2", "quote", "syn", @@ -764,9 +773,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro" -version = "0.2.93" +version = "0.2.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "585c4c91a46b072c92e908d99cb1dcdf95c5218eeb6f3bf1efa991ee7a68cccf" +checksum = "2cc6181fd9a7492eef6fef1f33961e3695e4579b9872a6f7c83aee556666d4fe" dependencies = [ "quote", "wasm-bindgen-macro-support", @@ -774,9 +783,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro-support" -version = "0.2.93" +version = "0.2.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "afc340c74d9005395cf9dd098506f7f44e38f2b4a21c6aaacf9a105ea5e1e836" +checksum = "30d7a95b763d3c45903ed6c81f156801839e5ee968bb07e534c44df0fcd330c2" dependencies = [ "proc-macro2", "quote", @@ -787,15 +796,15 @@ dependencies = [ [[package]] name = "wasm-bindgen-shared" -version = "0.2.93" +version = "0.2.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c62a0a307cb4a311d3a07867860911ca130c3494e8c2719593806c08bc5d0484" +checksum = "943aab3fdaaa029a6e0271b35ea10b72b943135afe9bffca82384098ad0e06a6" [[package]] name = "web-sys" -version = "0.3.70" +version = "0.3.76" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "26fdeaafd9bd129f65e7c031593c24d62186301e0c72c8978fa1678be7d532c0" +checksum = "04dd7223427d52553d3702c004d3b2fe07c148165faa56313cb00211e31c12bc" dependencies = [ "js-sys", "wasm-bindgen", diff --git a/Cargo.toml b/Cargo.toml index 9a99248..236bd58 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -11,7 +11,7 @@ description = "A fast stochastic simulator for chemical reaction networks" keywords = ["gillespie-algorithm", "systems-biology", "stochastic", "scientific-computing"] [dependencies] -pyo3 = { version = "0.22.3", features = ["extension-module"] } +pyo3 = { version = "0.23.3", features = ["extension-module"] } rand = { version = "0.8.5", features = ["small_rng"] } rand_distr = "0.4.3" @@ -21,7 +21,7 @@ generate-import-lib = ["pyo3/generate-import-lib"] [dev-dependencies] criterion = "0.5.1" -iai-callgrind = "0.13.4" +iai-callgrind = "0.14.0" [lib] path = "src/lib.rs"