DESCRIPTION

Package: RJMCMCNucleosomes
Version: 1.1.0
Date: 2015-05-01
Title: Bayesian hierarchical model for genome-wide nucleosome
    positioning with high-throughput short-read data (MNase-Seq)
Description: This package does nucleosome positioning using informative
    Multinomial-Dirichlet prior in a t-mixture with reversible jump
    estimation of nucleosome positions for genome-wide profiling.
Authors@R: c(person("Pascal", "Belleau",
    email="pascal_belleau@hotmail.com", role=c("aut")),
    person("Rawane", "Samb",
    email="rawane.samb.1@ulaval.ca", role=c("aut")),
    person("Astrid", "Deschênes",
    email="adeschen@hotmail.com",
    role=c("cre","aut")),
    person("Khader", "Khadraoui",
    email="Khader.Khadraoui@mat.ulaval.ca", role=c("aut")),
    person("Lajmi", "Lakhal-Chaieb",
    email="Lajmi.Lakhal@mat.ulaval.ca;", role=c("aut")),
    person("Arnaud", "Droit",
    email="arnaud.droit@crchuq.ulaval.ca", role=c("aut")))
Depends:
    R (>= 3.4),
    IRanges,
    GenomicRanges
Imports:
    Rcpp (>= 0.12.5),
    consensusSeekeR,
    BiocGenerics,
    GenomeInfoDb,
    S4Vectors,
    BiocParallel,
    stats,
    graphics,
    methods,
    grDevices
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    nucleoSim,
    RUnit
LinkingTo: Rcpp
SystemRequirements: Rcpp
Encoding: UTF-8
License: Artistic-2.0
URL: https://github.com/ArnaudDroitLab/RJMCMCNucleosomes
BugReports: https://github.com/ArnaudDroitLab/RJMCMCNucleosomes/issues
VignetteBuilder: knitr
biocViews: BiologicalQuestion, ChIPSeq, NucleosomePositioning,
    Software, StatisticalMethod, Bayesian, Sequencing, Coverage
RoxygenNote: 6.0.1