DESCRIPTION

Package: metagene2
Version: 1.15.1
Date: 2022-03-03
Title: A package to produce metagene plots
Authors@R: c(person("Eric", "Fournier",
    email="ericfournier2@yahoo.ca",
    role=c("cre", "aut")), 
    person("Charles", "Joly Beauparlant",
    email="charles.joly-beauparlant@crchul.ulaval.ca", 
    role="aut"),
	person("Cedric", "Lippens",
    email="lippens.cedric@protonmail.com",
    role="aut"),
	person("Arnaud", "Droit", 
	email="arnaud.droit@crchuq.ulaval.ca",
    role="aut"))
Description: This package produces metagene plots to compare coverages
    of sequencing experiments at selected groups of genomic regions. It can
    be used for such analyses as assessing the binding of DNA-interacting 
    proteins at promoter regions or surveying antisense transcription over the
    length of a gene. The metagene2 package can manage all aspects of the 
    analysis, from normalization of coverages to plot facetting according to
    experimental metadata. Bootstraping analysis is used to provide confidence
    intervals of per-sample mean coverages.
biocViews: ChIPSeq, Genetics, MultipleComparison, Coverage, Alignment,
    Sequencing
License: Artistic-2.0
LazyData: true
BugReports: https://github.com/ArnaudDroitLab/metagene2/issues
URL: https://github.com/ArnaudDroitLab/metagene2
VignetteBuilder: knitr
Depends:
    R (>= 4.0),
    R6 (>= 2.0),
    GenomicRanges,
    BiocParallel
Imports:
    rtracklayer,
    tools,
    GenomicAlignments,
    GenomeInfoDb,
    IRanges,
    ggplot2,
    Rsamtools,
    purrr,
    data.table,
    methods,
    dplyr,
    magrittr,
    reshape2
Suggests:
    BiocGenerics,
    RUnit,
    knitr,
    BiocStyle,
    rmarkdown
RoxygenNote: 7.1.1