diff --git a/src/main/java/com/astrazeneca/vardict/modules/VariationRealigner.java b/src/main/java/com/astrazeneca/vardict/modules/VariationRealigner.java index 1717d76..f9145c6 100644 --- a/src/main/java/com/astrazeneca/vardict/modules/VariationRealigner.java +++ b/src/main/java/com/astrazeneca/vardict/modules/VariationRealigner.java @@ -2448,13 +2448,14 @@ void adjRefFactor(Variation ref, double factor_f) { if (instance().conf.y) { System.err.printf(" AdjRefFactor: %s %s\n", ref.varsCount, factor_f); } - + int oldVarsCount = ref.varsCount; ref.varsCount -= (int) (factor_f * ref.varsCount); ref.highQualityReadsCount -= (int) (factor_f * ref.highQualityReadsCount); ref.lowQualityReadsCount -= (int) (factor_f * ref.lowQualityReadsCount); - ref.meanPosition -= factor_f * ref.meanPosition; - ref.meanQuality -= factor_f * ref.meanQuality; - ref.meanMappingQuality -= factor_f * ref.meanMappingQuality; + double factorCnt = oldVarsCount != 0 ? Math.abs((ref.varsCount - oldVarsCount)) / (double) oldVarsCount : 1; + ref.meanPosition -= ref.meanPosition * factor_f * factorCnt; + ref.meanQuality -= ref.meanQuality * factor_f * factorCnt; + ref.meanMappingQuality -= ref.meanMappingQuality * factor_f * factorCnt; ref.numberOfMismatches -= factor_f * ref.numberOfMismatches; ref.varsCountOnForward -= (int) (factor_f * ref.varsCountOnForward); ref.varsCountOnReverse -= (int) (factor_f * ref.varsCountOnReverse); diff --git a/testdata/integrationtestcases/Amplicon;hg19.fa;Colo829-18_S3-sort.bam;chr1;933866-934466;933866-934466;-a 100.95 -D;.txt b/testdata/integrationtestcases/Amplicon;hg19.fa;Colo829-18_S3-sort.bam;chr1;933866-934466;933866-934466;-a 100.95 -D;.txt index 8ab88b5..4926bf1 100644 --- a/testdata/integrationtestcases/Amplicon;hg19.fa;Colo829-18_S3-sort.bam;chr1;933866-934466;933866-934466;-a 100.95 -D;.txt +++ b/testdata/integrationtestcases/Amplicon;hg19.fa;Colo829-18_S3-sort.bam;chr1;933866-934466;933866-934466;-a 100.95 -D;.txt @@ -1,6 +1,6 @@ Amplicon,hg19.fa,Colo829-18_S3-sort.bam,chr1,933866,934466,933866,934466,-a 10:0.95 -D Colo829-18_S3-sort testbed chr1 934099 934099 G C 4 4 0 0 2 2 C/C 1.0000 0;2 50.0 1 32.8 1 60.0 3.000 1.0000 0 0 3.000 1 4.0 3 3 CAACGCGGGGGCAGAGGGCG GTGCGCATGCGGGGCTGCAG chr1:933867-934466 SNV 1 1 0 0 C:4:F-2:R-2:1.0000:2:50.0:1:32.8:1:1.0000:60.0:3.000 Good0 4 4 0 0 2 2 C/C 1.0000 0;2 50.0 1 32.8 1 60.0 3.000 1.0000 0 chr1:933867-934466 Colo829-18_S3-sort testbed chr1 934106 934106 A G 4 3 1 0 1 2 A/G 0.7500 0;2 53.3 1 36.3 1 60.0 6.000 0.7500 0 0 1.000 1 4.7 3 4 GGGGCAGAGGGCGGGTGCGC TGCGGGGCTGCAGGGATGCG chr1:933867-934466 SNV 1 1 0 0 A:1:F-1:R-0:0.2500:0:40.0:0:41.0:0:0.2500:60.0:2.000 & G:3:F-1:R-2:0.7500:2:53.3:1:36.3:1:0.7500:60.0:6.000 Good0 4 3 1 0 1 2 A/G 0.7500 0;2 53.3 1 36.3 1 60.0 6.000 0.7500 0 chr1:933867-934466 -Colo829-18_S3-sort testbed chr1 934123 934123 T TGCGGAGGGGAGGGCGCGGA 8 2 2 2 1 1 T/+19 0.2500 2;2 38.7 1 37.8 1 70.4 4.000 0.6667 0.2500 27 2.000 5 1.2 2 3 CGCATGCGGGGCTGCAGGGA GCGGAGGGGAGGGCGCGGAG chr1:933867-934466 Insertion 1 1 0 0 T:4:F-2:R-2:0.5000:2:35.5:0:15.1:1:0.3333:49.6:0.333 & I+GCGGAGGGGAGGGCGCGGA:2:F-1:R-1:0.2500:2:38.7:1:37.8:1:0.6667:70.4:4.000 Good0 8 2 2 2 1 1 T/+19 0.2500 2;2 38.7 1 37.8 1 70.4 4.000 0.6667 0.2500 chr1:933867-934466 -Colo829-18_S3-sort testbed chr1 934144 934144 C G 8 6 0 0 2 4 G/G 0.7500 0;2 17.0 1 36.7 1 60.0 12.000 0.6000 0 0 2.000 1 3.0 6 10 GCGGAGGGGAGGGCGCGGAG GGAGGGCGCGGAGCGGAGGG chr1:933867-934466 SNV 1 1 0 0 G:6:F-2:R-4:0.7500:2:17.0:1:36.7:1:0.6000:60.0:12.000 & I+GGAGG:2:F-1:R-1:0.2500:2:22.7:0:32.5:1:0.1000:62.0:1.000 & I+GGAGGGCGCGGAGCGGAGGGGAGGGCGCGGAGCGGAGG:3:F-1:R-2:0.3750:2:40.0:1:39.9:1:0.3000:68.0:6.000 Good0 8 6 0 0 2 4 G/G 0.7500 0;2 17.0 1 36.7 1 60.0 12.000 0.6000 0 chr1:933867-934466 Good1 8 3 0 0 1 2 G/+38 0.3750 0;2 40.0 1 39.9 1 68.0 6.000 0.3000 0.3750 chr1:933867-934466 -Colo829-18_S3-sort testbed chr1 934144 934144 C CGGAGGGCGCGGAGCGGAGGGGAGGGCGCGGAGCGGAGG 8 3 0 0 1 2 G/+38 0.3750 0;2 40.0 1 39.9 1 68.0 6.000 0.3000 0.3750 21 4.000 1 4.9 3 10 GCGGAGGGGAGGGCGCGGAG GGAGGGCGCGGAGCGGAGGG chr1:933867-934466 Insertion 1 1 0 0 G:6:F-2:R-4:0.7500:2:17.0:1:36.7:1:0.6000:60.0:12.000 & I+GGAGG:2:F-1:R-1:0.2500:2:22.7:0:32.5:1:0.1000:62.0:1.000 & I+GGAGGGCGCGGAGCGGAGGGGAGGGCGCGGAGCGGAGG:3:F-1:R-2:0.3750:2:40.0:1:39.9:1:0.3000:68.0:6.000 Good0 8 6 0 0 2 4 G/G 0.7500 0;2 17.0 1 36.7 1 60.0 12.000 0.6000 0 chr1:933867-934466 Good1 8 3 0 0 1 2 G/+38 0.3750 0;2 40.0 1 39.9 1 68.0 6.000 0.3000 0.3750 chr1:933867-934466 +Colo829-18_S3-sort testbed chr1 934123 934123 T TGCGGAGGGGAGGGCGCGGA 8 2 2 2 1 1 T/+19 0.2500 2;2 33.0 1 32.2 1 60.0 4.000 0.6667 0.2500 27 2.000 5 1.2 2 3 CGCATGCGGGGCTGCAGGGA GCGGAGGGGAGGGCGCGGAG chr1:933867-934466 Insertion 1 1 0 0 T:4:F-2:R-2:0.5000:2:43.0:0:18.2:1:0.3333:60.0:0.333 & I+GCGGAGGGGAGGGCGCGGA:2:F-1:R-1:0.2500:2:33.0:1:32.2:1:0.6667:60.0:4.000 Good0 8 2 2 2 1 1 T/+19 0.2500 2;2 33.0 1 32.2 1 60.0 4.000 0.6667 0.2500 chr1:933867-934466 +Colo829-18_S3-sort testbed chr1 934144 934144 C G 8 6 0 0 2 4 G/G 0.7500 0;2 17.0 1 36.7 1 60.0 12.000 0.6000 0 0 2.000 1 3.0 6 10 GCGGAGGGGAGGGCGCGGAG GGAGGGCGCGGAGCGGAGGG chr1:933867-934466 SNV 1 1 0 0 G:6:F-2:R-4:0.7500:2:17.0:1:36.7:1:0.6000:60.0:12.000 & I+GGAGG:2:F-1:R-1:0.2500:2:22.0:0:31.5:1:0.1000:60.0:1.000 & I+GGAGGGCGCGGAGCGGAGGGGAGGGCGCGGAGCGGAGG:3:F-1:R-2:0.3750:2:35.3:1:35.2:1:0.3000:60.0:6.000 Good0 8 6 0 0 2 4 G/G 0.7500 0;2 17.0 1 36.7 1 60.0 12.000 0.6000 0 chr1:933867-934466 Good1 8 3 0 0 1 2 G/+38 0.3750 0;2 35.3 1 35.2 1 60.0 6.000 0.3000 0.3750 chr1:933867-934466 +Colo829-18_S3-sort testbed chr1 934144 934144 C CGGAGGGCGCGGAGCGGAGGGGAGGGCGCGGAGCGGAGG 8 3 0 0 1 2 G/+38 0.3750 0;2 35.3 1 35.2 1 60.0 6.000 0.3000 0.3750 21 4.000 1 4.9 3 10 GCGGAGGGGAGGGCGCGGAG GGAGGGCGCGGAGCGGAGGG chr1:933867-934466 Insertion 1 1 0 0 G:6:F-2:R-4:0.7500:2:17.0:1:36.7:1:0.6000:60.0:12.000 & I+GGAGG:2:F-1:R-1:0.2500:2:22.0:0:31.5:1:0.1000:60.0:1.000 & I+GGAGGGCGCGGAGCGGAGGGGAGGGCGCGGAGCGGAGG:3:F-1:R-2:0.3750:2:35.3:1:35.2:1:0.3000:60.0:6.000 Good0 8 6 0 0 2 4 G/G 0.7500 0;2 17.0 1 36.7 1 60.0 12.000 0.6000 0 chr1:933867-934466 Good1 8 3 0 0 1 2 G/+38 0.3750 0;2 35.3 1 35.2 1 60.0 6.000 0.3000 0.3750 chr1:933867-934466 diff --git a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_Insertion_chr20_60464465_60470068.bam;chr20;60464465-60470068;-f 0.001.txt b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_Insertion_chr20_60464465_60470068.bam;chr20;60464465-60470068;-f 0.001.txt index 995bfb9..b17790d 100644 --- a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_Insertion_chr20_60464465_60470068.bam;chr20;60464465-60470068;-f 0.001.txt +++ b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_Insertion_chr20_60464465_60470068.bam;chr20;60464465-60470068;-f 0.001.txt @@ -15,6 +15,6 @@ NA24385_Insertion_chr20_60465664_60468868 testbed chr20 60467252 60467252 T C 15 NA24385_Insertion_chr20_60465664_60468868 testbed chr20 60468259 60468259 C G 8 8 0 0 7 1 G/G 1.0000 0;2 30.9 1 38.2 1 52.5 16.000 1.0000 0.1250 1 1.000 1 3.2 8 8 GTGGATAAATGAATGGGTGG TGAATAGAGGGATAGATGGA chr20:60465665-60468868 SNV 0 0 NA24385_Insertion_chr20_60465664_60468868 testbed chr20 60468306 60468307 GT AG 11 3 6 1 3 0 GT/AG 0.2727 2;0 17.0 0 41.0 0 58.0 6.000 0.3000 0 0 3.000 4 1.3 3 10 ACCACAGGGATGGTGGATGG GGGTGGGTGGATGGATAGAT chr20:60465665-60468868 Complex 0 0 NA24385_Insertion_chr20_60465664_60468868 testbed chr20 60467272 60467272 C T 14 14 0 0 3 11 T/T 1.0000 0;2 33.1 1 40.3 1 60.0 28.000 1.0000 0.0714 1 2.000 2 2.2 14 14 TAAAGCCCGTTGGTGACTCA AGCTGTCCACAGACTGTCCA chr20:60465665-60468868 SNV 0 0 -NA24385_Insertion_chr20_60465664_60468868 testbed chr20 60468290 60468290 C CAGGGATGGTGGATGGGTGGGTGGGTGGATGGATAGATGGATAGATATGTGAATAGAGAGATGGTGGATGGAGGGGTGGGTGGATAGATGGATGGGTGGGTGAATAG 11 8 0 0 7 1 +106/+106 0.7273 0;2 51.0 1 37.7 1 48.3 16.000 1.0000 0.6364 41 2.000 2 2.4 8 8 GATAGATGGATGGGTGACCA AGGGATGGTGGATGGGTGGG chr20:60465665-60468868 Insertion 0 0 -NA24385_Insertion_chr20_60465664_60468868 testbed chr20 60468848 60468848 G GTGGA 12 7 3 1 6 1 G/+4 0.5833 2;2 37.8 1 39.0 1 57.6 14.000 0.7000 0.0833 15 4.000 4 0.6 7 10 GATGGTGGATGGGTGGGTGA TGGATGGATGGATGGGTGAA chr20:60465665-60468868 Insertion 0 0 +NA24385_Insertion_chr20_60465664_60468868 testbed chr20 60468290 60468290 C CAGGGATGGTGGATGGGTGGGTGGGTGGATGGATAGATGGATAGATATGTGAATAGAGAGATGGTGGATGGAGGGGTGGGTGGATAGATGGATGGGTGGGTGAATAG 11 8 0 0 7 1 +106/+106 0.7273 0;2 41.8 1 30.9 1 39.6 16.000 1.0000 0.6364 41 2.000 2 2.4 8 8 GATAGATGGATGGGTGACCA AGGGATGGTGGATGGGTGGG chr20:60465665-60468868 Insertion 0 0 +NA24385_Insertion_chr20_60465664_60468868 testbed chr20 60468848 60468848 G GTGGA 12 7 3 1 6 1 G/+4 0.5833 2;2 34.6 1 35.7 1 52.7 14.000 0.7000 0.0833 15 4.000 4 0.6 7 10 GATGGTGGATGGGTGGGTGA TGGATGGATGGATGGGTGAA chr20:60465665-60468868 Insertion 0 0 NA24385_Insertion_chr20_60465664_60468868 testbed chr20 60465775 60465775 G A 19 19 0 0 12 7 A/A 1.0000 0;2 37.1 1 37.3 1 60.0 5.333 1.0000 0 0 2.000 2 1.8 16 16 AGGATATAGCACCCAAGTAA TGTAAGCTATTTCTGGTTTT chr20:60465665-60468868 SNV 0 0 diff --git a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_19_58559581-58567861.bam;chr20;58559581;58567861;-f0.001.txt b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_19_58559581-58567861.bam;chr20;58559581;58567861;-f0.001.txt index f207397..55d2eab 100644 --- a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_19_58559581-58567861.bam;chr20;58559581;58567861;-f0.001.txt +++ b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_19_58559581-58567861.bam;chr20;58559581;58567861;-f0.001.txt @@ -1,14 +1,14 @@ Simple,GRCh37.fa,NA24385_chr_19_58559581_58567861.bam,chr19,58559581,58567861,-f 0.001 -NA24385_chr_19_58559581_58567861 testbed 19 58564449 58564449 T TCCTGAGTAGCTGGGATTACAGGCGCACACCACCCCGCCCAGCTAATTTTTGTATTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTGTCTAACTCCTCACCTCATGATCCACCTTCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCGGCCACATGTGCCCTTGTATCTTAAAGGACAGAACGGAGGACACAGGGGCCGTATTGAGCAGAGGAAGGGCCTGGACTTGGCTCAGTCACTGGGGTCCTCCGTGCCCCTGGGGAGCACAGGGAGATGCCAAGGCCATCCACTCACTACAGGTGACCCATCTCCCTCGCCCTCCACAGGGTCCCGGGCCCGCTTGCCTCTGAAGCCGAGTATCTGGGACGAGCCTGAGGACCTTCTCGCAGGGCCCTCCTCAGACCTGCGGGCAGAAGGGACTGTGATCTCGAGCCCCAAGGGTCCAAGTGCTCAGAGAATCAGTCCCCGAAGGAGAAACAGGAACACTGACCAGAGCGGCCGCCACCAGCCATCCCTCAAGCACACCAAAGGTGGTACCCAAGAGGCTGTTGCAGGCATCTCGGTAGTGCCGCGTGGGCCCCGAGGTGGGCGGC 38 2 16 4 2 0 T/+614 0.0526 2;0 37.6 1 37.2 1 72.8 4.000 0.1053 0.0526 33 3.000 1 1.2 2 19 GCGATTCTCCTGCCTCACCC CCTGAGTAGCTGGGATTACA 19:58559582-58567861 Insertion 0 2-4-2 +NA24385_chr_19_58559581_58567861 testbed 19 58564449 58564449 T TCCTGAGTAGCTGGGATTACAGGCGCACACCACCCCGCCCAGCTAATTTTTGTATTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTGTCTAACTCCTCACCTCATGATCCACCTTCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCGGCCACATGTGCCCTTGTATCTTAAAGGACAGAACGGAGGACACAGGGGCCGTATTGAGCAGAGGAAGGGCCTGGACTTGGCTCAGTCACTGGGGTCCTCCGTGCCCCTGGGGAGCACAGGGAGATGCCAAGGCCATCCACTCACTACAGGTGACCCATCTCCCTCGCCCTCCACAGGGTCCCGGGCCCGCTTGCCTCTGAAGCCGAGTATCTGGGACGAGCCTGAGGACCTTCTCGCAGGGCCCTCCTCAGACCTGCGGGCAGAAGGGACTGTGATCTCGAGCCCCAAGGGTCCAAGTGCTCAGAGAATCAGTCCCCGAAGGAGAAACAGGAACACTGACCAGAGCGGCCGCCACCAGCCATCCCTCAAGCACACCAAAGGTGGTACCCAAGAGGCTGTTGCAGGCATCTCGGTAGTGCCGCGTGGGCCCCGAGGTGGGCGGC 38 2 16 4 2 0 T/+614 0.0526 2;0 31.0 1 30.7 1 60.0 4.000 0.1053 0.0526 33 3.000 1 1.2 2 19 GCGATTCTCCTGCCTCACCC CCTGAGTAGCTGGGATTACA 19:58559582-58567861 Insertion 0 2-4-2 NA24385_chr_19_58559581_58567861 testbed 19 58563424 58563424 G GGGGACGGGAGTTAGGAGCCCCAGCTTGTAACAGTGACCCGAGCTGTGGCACAGGTCCCCTGGCTCCATCTAATGCTCTGTTGTCACTGTCCTGAAATGATCAACGATCTTTGAACAAGGGGATTTGCATTTCCATTTTGTACAGGGGCCCCTCGAATTCTGTCTCAGGTCCTGTTAAGAGCTCTTTAGGAGTGGTTATTTATTTTTTGTATAAGCAGAGTCTTGCTGTGTTGCCCAGGCTGGTCCCAAACTCCTGGCCTCAAGCAATCCTCCAGCATCAGCATCCCAAAGCACGGGAACAACAGGCGCGACACCGCGCACTGCCCTGGGACAGAGCCTTTGGGGATGACGCCCGTTCCTTGGTTGTTCGGTGGTGGTGGGGAGGATGGCTCCTGAGGGGCAGCTGCCGAACAGTCCTGTGCTTGCCATTCTAGGCGTCTGAGCTGATTCTGGATGCAGTGGCAGCAGCCCCAGCACTCCCCGAGGAAAGTGAGTGGCTGGAGACTACCCAGCTCCAGCAGAGTCTGCACACCAGGGCGGAGGCCGAAGCGCCCCGCGCCCCTGGCTTGCTGGGTGAGTCTGGCTCCTGTGTGGATTAAGGGTTGGAAATGGAGTTTGGGACTTCAACCCAAAGCCACAGACTTTGTTAATGGGTTGAGTTGGGTGCTTCGGTGGTGAACTCCACACTTCCCCCAGAAAGCATGCACACCTCCTGTGAGGACTGAGATCTGGGGCCCCTAGAACCACCATGTACATCGTTCACCCTACGAGAAGGGCCTCAGCCTCCGCACCTGAACGGCAGCCAAGGCAGACAGTCTGAGAGTGTTGGAGCACGGGGTTACCCAGA 24 2 12 0 2 0 G/+846 0.0833 0;0 22.0 1 42.0 1 60.0 4.000 0.1667 0.0833 70 5.000 1 0 2 12 GCAAGGACAGTGCAGCCTTG GGGACGGGAGTTAGGAGCCC 19:58559582-58567861 Insertion 0 2-0-0 -NA24385_chr_19_58559581_58567861 testbed 19 58565460 58565460 T TG 45 5 21 19 2 3 T/+1 0.1111 2;2 51.5 1 40.3 1 62.0 10.000 0.1389 0 6 7.000 1 0.6 5 36 GCCACCCGGCCCTGAGTCCC GGGGGGAGCTGATGGGCCCC 19:58559582-58567861 Insertion 0 0 +NA24385_chr_19_58559581_58567861 testbed 19 58565460 58565460 T TG 45 5 21 19 2 3 T/+1 0.1111 2;2 49.8 1 39.0 1 60.0 10.000 0.1389 0 6 7.000 1 0.6 5 36 GCCACCCGGCCCTGAGTCCC GGGGGGAGCTGATGGGCCCC 19:58559582-58567861 Insertion 0 0 NA24385_chr_19_58559581_58567861 testbed 19 58565418 58565419 GA G 30 2 21 7 0 2 A/-1 0.0667 2;0 28.5 1 34.4 1 60.0 4.000 0.0741 0.0333 1 2.000 1 0 2 27 CACGGCCCACGGCCACATGT ATGGCCAGCCTCGGGCCTCG 19:58559582-58567861 Deletion 0 0 -NA24385_chr_19_58559581_58567861 testbed 19 58565243 58565243 G GC 29 2 16 11 2 0 G/+1 0.0690 2;0 65.1 0 43.4 0 62.0 4.000 0.0690 0 6 7.000 1 1.0 2 29 TGGAGCCACCGAGGAAGAAA CCCCCCGGAGCAAGGGCCCC 19:58559582-58567861 Insertion 0 0 +NA24385_chr_19_58559581_58567861 testbed 19 58565243 58565243 G GC 29 2 16 11 2 0 G/+1 0.0690 2;0 63.0 0 42.0 0 60.0 4.000 0.0690 0 6 7.000 1 1.0 2 29 TGGAGCCACCGAGGAAGAAA CCCCCCGGAGCAAGGGCCCC 19:58559582-58567861 Insertion 0 0 NA24385_chr_19_58559581_58567861 testbed 19 58565233 58565233 G A 30 19 5 6 12 7 G/A 0.6333 2;2 37.0 1 36.6 1 60.0 8.500 0.6071 0.0667 1 1.000 1 2.2 17 28 ATCCACCTGCTGGAGCCACC AGGAAGAAAGCCCCCCGGAG 19:58559582-58567861 SNV 0 0 NA24385_chr_19_58559581_58567861 testbed 19 58564204 58564204 A G 44 2 11 31 1 1 A/G 0.0455 2;2 41.5 1 39.5 1 60.0 4.000 0.0476 0 0 1.000 1 1.0 2 42 CACCCTACGAGAAGGGCCTC GCCTCCGCACCTGAACGGCA 19:58559582-58567861 SNV 0 0 -NA24385_chr_19_58559581_58567861 testbed 19 58566218 58566218 A AT 13 3 0 10 0 3 A/+1 0.2308 0;0 15.2 1 41.0 1 63.6 6.000 0.2308 0.0769 10 11.000 1 0.4 3 13 TTTGTTTGACTTACAGAAGG TTTTTTTTTTAGATAGATGC 19:58559582-58567861 Insertion 0 0 +NA24385_chr_19_58559581_58567861 testbed 19 58566218 58566218 A AT 13 3 0 10 0 3 A/+1 0.2308 0;0 14.3 1 38.7 1 60.0 6.000 0.2308 0.0769 10 11.000 1 0.4 3 13 TTTGTTTGACTTACAGAAGG TTTTTTTTTTAGATAGATGC 19:58559582-58567861 Insertion 0 0 NA24385_chr_19_58559581_58567861 testbed 19 58564329 58564330 CT C 16 8 1 6 1 7 T/-1 0.5000 2;2 41.4 1 41.4 1 54.9 16.000 0.5714 0.0625 14 15.000 1 2.1 8 14 TCTGCTCCCAAAACATGTGC TTTTTTTTTTTTTTCGAGAC 19:58559582-58567861 Deletion 0 0 -NA24385_chr_19_58559581_58567861 testbed 19 58565921 58565921 G GT 32 3 12 17 1 2 G/+1 0.0938 2;2 31.9 1 35.0 1 62.4 2.000 0.0690 0 7 8.000 1 0 2 29 TAACAGATAAACAGGGTTTT TTTTTTTCCTTTTTTGGGTA 19:58559582-58567861 Insertion 0 0 +NA24385_chr_19_58559581_58567861 testbed 19 58565921 58565921 G GT 32 3 12 17 1 2 G/+1 0.0938 2;2 30.7 1 33.7 1 60.0 2.000 0.0690 0 7 8.000 1 0 2 29 TAACAGATAAACAGGGTTTT TTTTTTTCCTTTTTTGGGTA 19:58559582-58567861 Insertion 0 0 NA24385_chr_19_58559581_58567861 testbed 19 58562829 58562829 A T 2 2 0 0 0 2 T/T 1.0000 0;0 18.0 0 42.0 0 60.0 4.000 1.0000 0 0 1.000 1 1.0 2 2 TTAACTCCCTTCCTGCCATC GCTCCCTCCCTCCCTCCCTC 19:58559582-58567861 SNV 0 0 NA24385_chr_19_58559581_58567861 testbed 19 58565086 58565087 GA G 40 2 13 23 0 2 A/-1 0.0500 2;0 28.0 0 34.5 1 60.0 4.000 0.0714 0 0 3.000 1 1.5 2 28 TTCCAGTGTGCCGACTGTGG TGGTCTTCACCTGGGTCACC 19:58559582-58567861 Deletion 0 0 NA24385_chr_19_58559581_58567861 testbed 19 58565732 58565734 GTC G 29 2 16 10 1 1 T/-2 0.0690 2;2 36.0 1 42.0 0 60.0 4.000 0.0741 0 2 2.000 2 0.5 2 27 CTTTCAGAAGCCTTGTCCAG TCCCTGTTAGCACCTGACTC 19:58559582-58567861 Deletion 0 0 diff --git a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_20156208-20234556.bam;chr20;20156208;20234556;-f0.001.txt b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_20156208-20234556.bam;chr20;20156208;20234556;-f0.001.txt index 8bf9ec7..b4a4f98 100644 --- a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_20156208-20234556.bam;chr20;20156208;20234556;-f0.001.txt +++ b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_20156208-20234556.bam;chr20;20156208;20234556;-f0.001.txt @@ -1,6 +1,6 @@ Simple,GRCh37.fa,NA24385_chr_20_20156208_20234556.bam,chr20,20156208,20234556,-f 0.001 -NA24385_chr_20_20156208_20234556 testbed 20 20185385 20185385 T TA 86 2 44 38 2 0 T/+1 0.0233 2;0 58.5 0 43.1 0 61.6 4.000 0.0244 0 5 6.000 1 0 2 82 ATCACCTTGGTAGAGGTTTC AAAAAGGCAGACCTGTATTT 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20218198 20218198 T TC 67 3 25 36 3 0 T/+1 0.0448 2;0 35.9 1 41.4 1 61.6 6.000 0.0545 0 5 6.000 1 0 3 55 GTGGATCTCTCTCTTCGGTC CCCCCTGGAGGTCAGAGTGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20185385 20185385 T TA 86 2 44 38 2 0 T/+1 0.0233 2;0 57.0 0 42.0 0 60.0 4.000 0.0244 0 5 6.000 1 0 2 82 ATCACCTTGGTAGAGGTTTC AAAAAGGCAGACCTGTATTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20218198 20218198 T TC 67 3 25 36 3 0 T/+1 0.0448 2;0 35.0 1 40.3 1 60.0 6.000 0.0545 0 5 6.000 1 0 3 55 GTGGATCTCTCTCTTCGGTC CCCCCTGGAGGTCAGAGTGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20218294 20218294 C A 65 4 25 36 3 1 C/A 0.0615 2;2 16.2 1 34.2 1 60.0 3.000 0.0492 0 0 1.000 1 2.5 3 61 CAACAAAAATGGATTGAGTA TATTAACACACTCGAACAAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20185569 20185570 AT A 65 2 22 41 0 2 T/-1 0.0308 2;0 34.0 0 42.0 0 60.0 4.000 0.0345 0 2 3.000 1 1.0 2 58 ACACTATCTATGAGAAGTGC TTCCTTCTACTTATAGTGAA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20185550 20185550 C T 64 2 24 38 0 2 C/T 0.0312 2;0 54.0 0 42.0 0 60.0 4.000 0.0323 0 0 1.000 1 1.0 2 62 AGCCAGTTCCTATGTGTTTA ACTATCTATGAGAAGTGCAT 20:20156209-20234556 SNV 0 0 @@ -18,7 +18,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20185790 20185790 T TTATTCTCATTACTGT NA24385_chr_20_20156208_20234556 testbed 20 20218533 20218533 G A 70 3 47 20 2 1 G/A 0.0429 2;2 19.7 1 31.7 1 60.0 2.000 0.0308 0 0 2.000 1 1.0 2 65 TTCTTGTTAGGTTCTTGCAT TTAGAGAATTTAAGATGAAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20185812 20185812 T C 77 4 46 27 2 2 T/C 0.0519 2;2 34.0 1 40.8 1 60.0 8.000 0.0548 0 0 5.000 1 1.0 4 73 ATTCTCATTACTGTCCTAAT TTTCGCTCTTAGAAAGGTTA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20186374 20186375 GT G 80 2 39 37 0 2 T/-1 0.0250 2;0 45.5 1 39.5 1 60.0 4.000 0.0282 0 3 4.000 1 1.0 2 71 CCAGGTTGGTGTGCTGGCAG TTTGGACACCTGCTGATTCA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20186461 20186461 T TACAAAGGTTTTTTGTAACA 70 3 22 44 1 2 T/+19 0.0429 2;2 15.4 1 41.4 1 61.6 6.000 0.0476 0.0429 5 2.000 1 0 3 63 ACCTTTGTAATTTTTGTTGT ACAAAAAACCTTTGTTGTTA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20186461 20186461 T TACAAAGGTTTTTTGTAACA 70 3 22 44 1 2 T/+19 0.0429 2;2 15.0 1 40.3 1 60.0 6.000 0.0476 0.0429 5 2.000 1 0 3 63 ACCTTTGTAATTTTTGTTGT ACAAAAAACCTTTGTTGTTA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20219214 20219214 C T 79 2 37 40 2 0 C/T 0.0253 2;0 36.0 0 42.0 0 60.0 4.000 0.0267 0 0 1.000 1 1.0 2 75 ATGCCTGCACCCTGCAGACA GCACAGCACACACAAAATCA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20186535 20186536 TG T 92 2 52 38 1 1 G/-1 0.0217 2;2 9.0 1 42.0 1 60.0 4.000 0.0227 0.0109 1 2.000 1 0 2 88 AAAAAAATTATGATCCCATA GAGGCTACATTATACATTTC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20218891 20218891 T A 85 2 42 41 1 1 T/A 0.0235 2;2 44.0 1 42.0 0 60.0 4.000 0.0244 0 1 3.000 1 1.0 2 82 TTCACAGAGCTCCCAACTTC AAACTCCACCTATAGTATTT 20:20156209-20234556 SNV 0 0 @@ -26,7 +26,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20219063 20219065 GTT G 83 2 42 39 0 NA24385_chr_20_20156208_20234556 testbed 20 20219048 20219049 AT A 85 2 42 41 2 0 T/-1 0.0235 2;0 57.0 0 39.5 1 60.0 4.000 0.0247 0 1 2.000 1 3.5 2 81 TTTTGTCACTGTTTTGAACC TCAGAAAGCAGAGGTTTTAG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20219125 20219125 A T 84 2 49 33 0 2 A/T 0.0238 2;0 32.0 0 42.0 0 60.0 4.000 0.0250 0 0 1.000 1 1.5 2 80 AATAATTTTTTCTCTACATT TCTATTTGTTCAAATAACAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20219134 20219134 T C 85 2 50 33 0 2 T/C 0.0235 2;0 34.0 0 37.0 0 60.0 4.000 0.0256 0 0 2.000 1 3.5 2 78 TTCTCTACATTATCTATTTG TCAAATAACAGCATTAATTA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20219109 20219109 A AT 84 2 43 34 0 2 A/+1 0.0238 2;0 19.6 0 43.4 0 62.0 4.000 0.0270 0 6 7.000 1 0 2 74 TAGATCGATGTGGGATAATA TTTTTTCTCTACATTATCTA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20219109 20219109 A AT 84 2 43 34 0 2 A/+1 0.0238 2;0 19.0 0 42.0 0 60.0 4.000 0.0270 0 6 7.000 1 0 2 74 TAGATCGATGTGGGATAATA TTTTTTCTCTACATTATCTA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20186913 20187304 T 90 2 25 47 2 0 T/ 0.0222 2;0 37.0 1 41.9 1 60.0 4.000 0.0286 0.0222 0 3.000 1 0 2 70 GCTTCACATTGAGATATAAA GTTGATGACATTTGAGTTAT 20:20156209-20234556 INV 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20187054 20187054 G A 66 2 41 23 0 2 G/A 0.0303 2;0 14.0 0 42.0 0 60.0 4.000 0.0323 0 1 1.000 1 1.0 2 62 AAAGGAACCTGTACCCATTG CAGTCACTTCCTCTCTTTCC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20187050 20187051 AT A 69 3 38 28 3 0 T/-1 0.0435 2;0 47.0 0 42.0 0 60.0 6.000 0.0441 0 1 2.000 1 0 3 68 TGCAAAAGGAACCTGTACCC TGGCAGTCACTTCCTCTCTT 20:20156209-20234556 Deletion 0 0 @@ -34,7 +34,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20219855 20219858 TATA T 118 2 40 76 NA24385_chr_20_20156208_20234556 testbed 20 20186646 20186646 G T 96 3 55 38 1 2 G/T 0.0312 2;2 16.7 1 25.0 1 60.0 2.000 0.0215 0 0 5.000 1 1.3 2 93 GGTTTATTTTTTGGGGTGGG GTTGGGTGGAGGGAAGAGAC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20219507 20219507 C T 89 3 44 41 0 3 C/T 0.0337 2;0 9.0 0 42.0 0 60.0 6.000 0.0349 0 1 2.000 1 1.3 3 86 AGCTGTTCCTCCCTTTGTAT CACAGCAACGTGAAATCCCC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20219576 20219577 AT A 64 2 32 29 1 1 T/-1 0.0312 2;2 10.0 1 37.9 1 60.0 4.000 0.0328 0.0156 1 2.000 1 0 2 61 GTGCCCTTGTTTAATGTTTC TGGCTTGAGCACTTAACTTG 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20219601 20219601 C CT 54 2 25 20 1 1 C/+1 0.0370 2;2 42.7 1 40.0 0 64.8 4.000 0.0435 0 13 14.000 1 1.6 2 46 CTTGAGCACTTAACTTGAAA TTTTTTTTTTTTTCATGATA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20219601 20219601 C CT 54 2 25 20 1 1 C/+1 0.0370 2;2 39.5 1 37.0 0 60.0 4.000 0.0435 0 13 14.000 1 1.6 2 46 CTTGAGCACTTAACTTGAAA TTTTTTTTTTTTTCATGATA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20220176 20220176 T A 68 2 24 42 1 1 T/A 0.0294 2;2 29.5 1 37.0 1 60.0 4.000 0.0312 0.0147 0 1.000 1 2.5 2 64 CTTACCATTTATTGAAAATG ACTATGCAGAGGCGATATTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20187397 20187399 CAT C 74 4 37 31 1 3 A/-2 0.0541 2;2 23.8 1 40.8 1 60.0 8.000 0.0580 0.0135 12 7.000 2 0.2 4 69 TTTTGGGTATATATATATAC ATATATATATATGTTTTCAT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20187499 20187499 C A 70 2 31 37 2 0 C/A 0.0286 2;0 54.0 0 42.0 0 60.0 4.000 0.0308 0 4 3.000 1 3.5 2 65 TTAATATTTTGAGGAACTGC AAACTATTTTCCAAAGTGAC 20:20156209-20234556 SNV 0 0 @@ -45,31 +45,31 @@ NA24385_chr_20_20156208_20234556 testbed 20 20220382 20220382 C CCTTGGTAAAATCTCT NA24385_chr_20_20156208_20234556 testbed 20 20219928 20219928 T A 108 2 45 61 2 0 T/A 0.0185 2;0 40.0 0 42.0 0 60.0 4.000 0.0194 0 0 3.000 1 2.0 2 103 ATTAAATATTTAGACACTGC AAATCGGATTATAGAGAGAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20220021 20220021 A G 81 2 40 39 0 2 A/G 0.0247 2;0 13.0 0 42.0 0 60.0 4.000 0.0267 0 1 3.000 1 1.0 2 75 TTTTCATATAAAGTCATGAA GGGCAGGGAACCTTCTCTGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20187258 20187258 C CTATCCTATTGTGTGGATAATACTATATTTTATTTTTTCATGCATGAGTTGATGACATTTGAGTTATTTCCACTATTTGGCTATGATGGAAATGTTGCTATGAAAATTTGCACACAGGTTTTTGGGTATATATATATACCATATATATATATATGTTTTCATTTGGGGGGCGGTGTCTATACCTACAAGTGGGACTGCTGGGTCATATGGTAACTCTATGTTTAATATTTTGAGGA 81 6 43 38 2 4 C/+235 0.0741 2;2 23.3 1 34.3 1 35.0 12.000 0.0732 0.0741 70 1.000 1 0.7 6 82 TATCTCTTTTTTATTGTTGA TATCCTATTGTGTGGATAAT 20:20156209-20234556 Insertion 0 6-3-1 -NA24385_chr_20_20156208_20234556 testbed 20 20187243 20187243 C CT 71 2 30 34 2 0 C/+1 0.0282 2;0 34.1 0 40.8 1 62.0 4.000 0.0308 0 6 7.000 1 1.0 2 65 TGTGTATCTGTACTTTATCT TTTTTTATTGTTGACTATCC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20187243 20187243 C CT 71 2 30 34 2 0 C/+1 0.0282 2;0 33.0 0 39.5 1 60.0 4.000 0.0308 0 6 7.000 1 1.0 2 65 TGTGTATCTGTACTTTATCT TTTTTTATTGTTGACTATCC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20187934 20187934 T TGTTAAAAAGAGCTGCCACTGCTTCCAACAGAAAAGAAAAAATTCTAAGGATTTCCTGGATGCTGATCGGGTTCTTGCCACAACCCAGTAGGGGGAAAAAAAATGCATTCTCCTCCCTGCAGAGCCAGGGTAATGAATGCCACAGAGGTCCAGAAGTGCCTCCGGACGCATCAGCTGCCTGCTGCAGAGCTCTGGAAGCCTGCAGCCTAGCAAGGCTCCGGGTGGAGCTGAGCTCCCAGGCAGAAACTGGCC 65 3 28 32 0 3 T/+251 0.0462 2;0 26.0 1 41.2 1 60.0 6.000 0.0484 0.0462 70 2.000 1 0 3 62 ACCTTTAGTAATATTATTGC GTTAAAAAGAGCTGCCACTG 20:20156209-20234556 Insertion 0 3-0-0 -NA24385_chr_20_20156208_20234556 testbed 20 20188028 20188028 G GA 77 6 32 37 1 5 G/+1 0.0779 2;2 52.2 1 43.1 1 62.8 12.000 0.0857 0 8 9.000 1 0.3 6 70 TTGCCACAACCCAGTAGGGG AAAAAAAATGCATTCTCCTC 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20220771 20220771 A AC 81 3 42 33 0 3 A/+1 0.0370 2;0 52.7 0 43.4 0 62.0 6.000 0.0441 0 6 7.000 1 0 3 68 GGGCACATATTAAATTTGAC CCCCCCTGGAGCATGCCAGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20188028 20188028 G GA 77 6 32 37 1 5 G/+1 0.0779 2;2 49.8 1 41.2 1 60.0 12.000 0.0857 0 8 9.000 1 0.3 6 70 TTGCCACAACCCAGTAGGGG AAAAAAAATGCATTCTCCTC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20220771 20220771 A AC 81 3 42 33 0 3 A/+1 0.0370 2;0 51.0 0 42.0 0 60.0 6.000 0.0441 0 6 7.000 1 0 3 68 GGGCACATATTAAATTTGAC CCCCCCTGGAGCATGCCAGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20220846 20224383 T 99 2 44 31 2 0 T/+3538 0.0202 2;0 42.0 1 36.2 1 33.0 4.000 0.0312 0.0202 0 0 0 1.0 2 64 GCTCAGAAGAATCACTGTAG CAAAGTCTTAAATCATTATA 20:20156209-20234556 DUP 0 2-9-1 NA24385_chr_20_20156208_20234556 testbed 20 20220918 20220918 C A 68 65 0 2 31 34 C/A 0.9559 0;2 27.5 1 38.4 1 60.0 20.667 0.9688 0.0294 0 1.000 1 2.1 62 64 CACCCAGGGAAATAGGCATG AGCTTGGGAAGCTTGGCTAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20188113 20188113 T G 74 2 48 24 0 2 T/G 0.0270 2;0 8.0 0 34.5 1 60.0 4.000 0.0278 0 1 2.000 3 3.0 2 72 CTCCGGACGCATCAGCTGCC GCTGCAGAGCTCTGGAAGCC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20220869 20220869 C T 62 59 1 2 32 27 C/T 0.9516 2;2 37.0 1 39.1 1 60.0 13.750 0.9649 0.0484 1 2.000 1 2.3 55 57 AGTACATTGTAGTAAATGTG AAGAGGAAGTCCTGGTGGTG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20220431 20220431 A C 71 2 30 39 1 1 A/C 0.0282 2;2 26.0 1 34.5 1 60.0 4.000 0.0290 0 0 3.000 1 4.5 2 69 GTAGGGATTTTAAAACCGGA ACCGTTGAGATTTTATTTAA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20187729 20187729 A ATT 64 2 32 29 2 0 A/+2 0.0312 2;0 39.0 0 41.8 1 61.6 4.000 0.0364 0 5 7.000 1 0 2 55 CAGTTCTTTTGAAAGCAGAG TTTTTCTAAAATAAAACCTC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20187729 20187729 A ATT 64 2 32 29 2 0 A/+2 0.0312 2;0 38.0 0 40.8 1 60.0 4.000 0.0364 0 5 7.000 1 0 2 55 CAGTTCTTTTGAAAGCAGAG TTTTTCTAAAATAAAACCTC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20220604 20220605 CA C 54 33 12 9 20 13 A/-1 0.6111 2;2 39.2 1 40.4 1 60.0 66.000 0.6226 0.0185 2 3.000 1 1.0 33 53 TCAAGAGATGTGGACAAGGT AAGTGATTGGACATGGTGGC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20187815 20187815 G GAGAGCTCAGGTAGCAAACAAGATGCCCATCCAAATGCAGGAGGAAAATGGGGGACTTTCTGTTTTTTTAAAGCCACCAGCAGGTTCTTTGTTTGACCCACCTTTAGTAATATTATTGCTGTTAAAAAGAGCTGCCACTGCTTCCAAC 79 3 52 27 3 0 G/+147 0.0380 2;0 63.0 1 40.0 1 60.0 6.000 0.0375 0.0380 70 3.000 2 0 3 80 GGTCCTGTGTGGACATCTAA AGAGCTCAGGTAGCAAACAA 20:20156209-20234556 Insertion 0 3-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20187822 20187823 CA C 78 2 48 27 1 1 A/-1 0.0256 2;2 41.0 1 42.0 0 60.0 4.000 0.0263 0 0 1.000 1 0 2 76 TGTGGACATCTAAGAGAGCT GGTAGCAAACAAGATGCCCA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20220575 20220575 T TG 62 2 38 21 2 0 T/+1 0.0323 2;0 29.8 0 40.6 1 61.6 4.000 0.0357 0 5 6.000 1 0.5 2 56 GTTATAGGAGGGGAGGGTTG GGGGGCATTCAAGAGATGTG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20220575 20220575 T TG 62 2 38 21 2 0 T/+1 0.0323 2;0 29.0 0 39.5 1 60.0 4.000 0.0357 0 5 6.000 1 0.5 2 56 GTTATAGGAGGGGAGGGTTG GGGGGCATTCAAGAGATGTG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20220568 20220568 A C 63 32 20 11 21 11 A/C 0.5079 2;2 35.7 1 40.9 1 60.0 64.000 0.5714 0.0159 1 3.000 1 1.5 32 56 GCAGTGTGTTATAGGAGGGG GGGTTGTGGGGGCATTCAAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20220641 20220642 GA G 73 3 36 34 1 2 A/-1 0.0411 2;2 37.3 1 42.0 0 60.0 6.000 0.0462 0 1 3.000 1 1.0 3 65 GTGGCCAAAGTGTGTAGTGG AGGAGCCTGAGACTGGCTGC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20220636 20220636 A T 72 2 37 33 0 2 A/T 0.0278 2;0 6.0 0 37.0 1 60.0 4.000 0.0312 0 0 1.000 1 2.0 2 64 ACATGGTGGCCAAAGTGTGT GTGGGAAGGAGCCTGAGACT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20220622 20220622 T A 60 2 32 26 2 0 T/A 0.0333 2;0 60.0 0 42.0 0 60.0 4.000 0.0370 0 0 2.000 1 2.0 2 54 GTCAAAGTGATTGGACATGG GGCCAAAGTGTGTAGTGGGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221242 20221242 G T 98 3 41 54 2 1 G/T 0.0306 2;2 19.7 1 30.0 1 60.0 2.000 0.0217 0 0 1.000 1 2.3 2 92 TTTTTTTTTGCCTGGATCCT ATTAATAAGGATCTTCTCAT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20221218 20221218 C CT 98 6 40 38 1 5 C/+1 0.0612 2;2 36.0 1 41.5 1 64.4 5.000 0.0625 0.0102 12 13.000 1 1.8 5 80 GACCTTGTGGAGTCCGCCAT TTTTTTTTTTTTGCCTGGAT 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20221218 20221218 C CTT 98 2 40 38 0 2 C/+2 0.0204 2;0 58.0 0 45.1 0 64.4 4.000 0.0250 0 12 14.000 1 1.1 2 80 GACCTTGTGGAGTCCGCCAT TTTTTTTTTTTTGCCTGGAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20221218 20221218 C CT 98 6 40 38 1 5 C/+1 0.0612 2;2 33.5 1 38.7 1 60.0 5.000 0.0625 0.0102 12 13.000 1 1.8 5 80 GACCTTGTGGAGTCCGCCAT TTTTTTTTTTTTGCCTGGAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20221218 20221218 C CTT 98 2 40 38 0 2 C/+2 0.0204 2;0 54.0 0 42.0 0 60.0 4.000 0.0250 0 12 14.000 1 1.1 2 80 GACCTTGTGGAGTCCGCCAT TTTTTTTTTTTTGCCTGGAT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221218 20221219 CT C 97 5 41 47 3 2 T/-1 0.0515 2;2 37.0 1 40.0 1 60.0 10.000 0.0549 0 11 12.000 1 1.4 5 91 GACCTTGTGGAGTCCGCCAT TTTTTTTTTTTGCCTGGATC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221218 20221220 CTT C 97 3 41 47 2 1 T/-2 0.0309 2;2 13.3 1 35.3 1 60.0 2.000 0.0220 0.0103 10 12.000 1 0.7 2 91 GACCTTGTGGAGTCCGCCAT TTTTTTTTTTGCCTGGATCC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221297 20221297 A AAATAGAGACTTCTAATTGCCTCCCAGTATTCATTCTGCACTTGGTGACAAAACCCTGGGGACTGTGGTTCTTTGAAACATCACTGTGTTTTCTTTGAAAAACTACATTTTCCAGACTCCCTGCTTCTCCCTGGCCATGTCACTGAGTTCTGGCTAGGTAAGCAGAAATGTGGGACTTTCAGGAAGTCTCCTTAATAGGCAGCACTCTCTGCCCATTTCTCCTTCCTCTGCCTGTAATGTGGCTGTGATGGCTGGAGCTCCAGGAGCTACCTTGAACCTGAGGTGACCCTGAAAATGGAAATCACACATGGAGAAGCAGAGAAGCAGGTCATGGGCCCAGCC 89 2 39 50 0 2 A/+341 0.0225 2;0 22.0 1 40.5 1 60.0 4.000 0.0235 0.0225 70 4.000 1 0.5 2 85 CTTCCTCCATGAGTCAATGA AATAGAGACTTCTAATTGCC 20:20156209-20234556 Insertion 0 2-11-2 -NA24385_chr_20_20156208_20234556 testbed 20 20221290 20221290 T TCAATGAAAATAGAGAGTTCTAATTGCCTCCCAGTATTCATTCTGCACTTGGTGACAAAACCCTGGGGACTGTGGTTCTTTGAAACATCACTGTGTTTTCTTTGAAAAACTACATTTTCCAGACTCCCTGCTTCTCCCTGGCCATGTCACTGAGTTCTGGCTAGGTAAGCAGAAATGTGGGACTTTCAGGAAGTCTCCTTAATAGGCAGCACTCTCTGCCCATTTCTCCTTCCTCTGCCTGTAATGTGGCTGTGATGGCTGGAGCTCCAGGAGCTACCTTGAACCTGAGGTGACCCTGAAAATGGAAATCACACATGGAGAAGCAGAGAAGCAGGTCATGGGCCCAGCTGCCTAGC 99 2 36 53 2 0 T/+355 0.0202 2;0 51.4 1 44.4 1 65.6 4.000 0.0244 0.0202 15 2.000 1 0 2 82 GCTCATCCTTCCTCCATGAG CAATGAAAATAGAGACTTCT 20:20156209-20234556 Insertion 0 2-11-2 +NA24385_chr_20_20156208_20234556 testbed 20 20221290 20221290 T TCAATGAAAATAGAGAGTTCTAATTGCCTCCCAGTATTCATTCTGCACTTGGTGACAAAACCCTGGGGACTGTGGTTCTTTGAAACATCACTGTGTTTTCTTTGAAAAACTACATTTTCCAGACTCCCTGCTTCTCCCTGGCCATGTCACTGAGTTCTGGCTAGGTAAGCAGAAATGTGGGACTTTCAGGAAGTCTCCTTAATAGGCAGCACTCTCTGCCCATTTCTCCTTCCTCTGCCTGTAATGTGGCTGTGATGGCTGGAGCTCCAGGAGCTACCTTGAACCTGAGGTGACCCTGAAAATGGAAATCACACATGGAGAAGCAGAGAAGCAGGTCATGGGCCCAGCTGCCTAGC 99 2 36 53 2 0 T/+355 0.0202 2;0 47.0 1 40.6 1 60.0 4.000 0.0244 0.0202 15 2.000 1 0 2 82 GCTCATCCTTCCTCCATGAG CAATGAAAATAGAGACTTCT 20:20156209-20234556 Insertion 0 2-11-2 NA24385_chr_20_20156208_20234556 testbed 20 20221249 20221249 A C 102 3 42 57 1 2 A/C 0.0294 2;2 24.7 1 35.3 1 60.0 2.000 0.0220 0 0 2.000 1 4.0 2 91 TTGCCTGGATCCTGATTAAT AGGATCTTCTCATATCCCCA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221256 20221256 T C 107 2 38 67 2 0 T/C 0.0187 2;0 13.5 1 42.0 0 60.0 4.000 0.0202 0 0 2.000 1 2.5 2 99 GATCCTGATTAATAAGGATC TCTCATATCCCCAGCTCATC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221353 20221353 T C 94 3 50 41 3 0 T/C 0.0319 2;0 55.0 0 42.0 0 60.0 6.000 0.0345 0 1 4.000 1 1.0 3 87 TGCACTTGGTGACAAAACCC GGGGACTGTGGTTCTTTGAA 20:20156209-20234556 SNV 0 0 @@ -79,7 +79,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20220994 20220994 A C 90 2 44 44 1 1 NA24385_chr_20_20156208_20234556 testbed 20 20188342 20188342 C CA 66 2 26 38 0 2 C/+1 0.0303 2;0 46.0 0 42.0 0 60.0 4.000 0.0328 0 0 1.000 1 1.0 2 61 ACTGACTAGAGAAGTGACAT TTTTCCCCTTGATTAAAAAT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221082 20221084 CCC TCA 82 2 42 38 2 0 CCC/TCA 0.0244 2;0 6.0 0 40.3 0 60.0 4.000 0.0247 0 0 4.000 1 3.0 2 81 AGCTCTCAGTGTTTCCTCCA CTGCTCCTTTAGGCCCAGGA 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221059 20221159 CCCAGCTCTCAGTGTTTCCTCCACCCCTGCTCCTTTAGGCCCAGGATCAGTGATGGCACCCACTGCTGCTAGACCCTGGGTACTCTCCTTCCCTCTTTGTC TTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTAGCCGGCACAGCCACGTAAG 84 3 45 36 0 3 C/-101iTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTAGCCGGCACAGCCACGTAAG 0.0357 2;0 78.3 1 39.7 1 60.0 6.000 0.0385 0.0357 2 3.000 1 1.0 3 78 GGGGAGGCCTCCTGCATGGC CCTGTAACCCTGCATACACA 20:20156209-20234556 Complex 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20188390 20188390 G GT 68 3 32 33 0 3 G/+1 0.0441 2;0 46.2 0 43.1 0 61.6 6.000 0.0476 0 5 6.000 1 3.1 3 63 TTATTACAAAAGCAATCTAT TTTTTGGTAGAAATTTTAGG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20188390 20188390 G GT 68 3 32 33 0 3 G/+1 0.0441 2;0 45.0 0 42.0 0 60.0 6.000 0.0476 0 5 6.000 1 3.1 3 63 TTATTACAAAAGCAATCTAT TTTTTGGTAGAAATTTTAGG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20188370 20188370 T C 63 34 14 15 14 20 T/C 0.5397 2;2 36.7 1 38.8 1 60.0 16.000 0.5333 0.0159 2 2.000 1 2.1 32 60 CTTGATTAAAAATAAATATG TATTACAAAAGCAATCTATG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221148 20221148 T A 82 46 16 17 24 22 T/A 0.5610 2;2 30.1 1 36.5 1 60.0 5.571 0.5821 0.0122 2 3.000 1 1.5 39 67 TAGACCCTGGGTACTCTCCT CCCTCTTTGTCCCTGTAACC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221703 20221703 A T 72 3 39 30 3 0 A/T 0.0417 2;0 56.0 0 33.7 1 60.0 6.000 0.0455 0 0 1.000 1 1.3 3 66 GATGTCCAGGTGTCTTAAGT TAGTTTTAAGAGAAATTTGC 20:20156209-20234556 SNV 0 0 @@ -91,7 +91,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20156234 20156234 G A 62 61 0 0 30 3 NA24385_chr_20_20156208_20234556 testbed 20 20156338 20156339 AT A 53 41 8 2 25 16 T/-1 0.7736 2;2 37.8 1 40.3 1 57.4 40.000 0.8000 0.0377 11 12.000 1 1.2 40 50 CCACCATGACACCTGACTAA TTTTTTTTTTTATTTTTAGT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20156338 20156340 ATT A 53 2 8 2 1 1 T/-2 0.0377 2;2 43.0 1 42.0 0 60.0 4.000 0.0400 0 10 12.000 1 0.5 2 50 CCACCATGACACCTGACTAA TTTTTTTTTTATTTTTAGTA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20189117 20189117 G T 65 2 29 34 0 2 G/T 0.0308 2;0 62.0 0 42.0 0 60.0 4.000 0.0328 0 0 1.000 1 1.0 2 61 CAGCACATAGGAAGCCTGTG CTGGAGAAGGCAGGATGGGG 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20221914 20221914 A AGG 93 2 38 51 0 2 A/+2 0.0215 2;0 18.5 0 43.1 0 61.6 4.000 0.0227 0 5 7.000 1 0 2 88 TGCTCACCCGAGTATGAGGA GGGGGATAGTAAGGATAACA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20221914 20221914 A AGG 93 2 38 51 0 2 A/+2 0.0215 2;0 18.0 0 42.0 0 60.0 4.000 0.0227 0 5 7.000 1 0 2 88 TGCTCACCCGAGTATGAGGA GGGGGATAGTAAGGATAACA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221902 20221902 C T 99 2 41 56 2 0 C/T 0.0202 2;0 29.5 1 34.5 1 60.0 4.000 0.0208 0.0101 0 1.000 1 1.5 2 96 ACATAGGAGATGTGCTCACC GAGTATGAGGAAGGGGGATA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221493 20221493 A G 88 2 32 54 0 2 A/G 0.0227 2;0 29.5 1 34.5 1 60.0 4.000 0.0241 0 0 2.000 1 1.5 2 83 TTTCAGGAAGTCTCCTTAAT GGCAGCACTCTCTGCCCATT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20221558 20221558 A T 95 3 38 54 1 2 A/T 0.0316 2;2 15.0 1 31.7 1 60.0 2.000 0.0230 0 0 2.000 1 3.3 2 87 GCTGTGATGGCTGGAGCTCC GGAGCTACCTTGAACCTGAG 20:20156209-20234556 SNV 0 0 @@ -105,32 +105,32 @@ NA24385_chr_20_20156208_20234556 testbed 20 20156796 20156796 A G 74 74 0 0 34 4 NA24385_chr_20_20156208_20234556 testbed 20 20156777 20156777 A T 78 3 32 42 0 3 A/T 0.0385 2;0 11.0 1 31.7 1 59.0 2.000 0.0267 0 0 3.000 1 3.0 2 75 ACTGATCATTAGTGAAATGC AATCAAAAACCACAAAGAAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20156781 20156782 CA C 85 70 4 10 31 39 A/-1 0.8235 2;2 36.8 1 40.3 1 57.4 69.000 0.8313 0.0824 4 5.000 1 1.6 69 83 ATCATTAGTGAAATGCAAAT AAAACCACAAAGAAATAGCA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20156739 20156740 GA G 76 2 31 42 0 2 A/-1 0.0263 2;0 23.0 0 42.0 0 60.0 4.000 0.0278 0 6 7.000 1 1.0 2 72 TTCATGCAGCCAACAAACAT AAAAAAGCTCAAAATCACTG 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20189584 20189584 T TGG 73 2 28 37 1 1 T/+2 0.0274 2;2 26.5 1 43.7 1 62.4 4.000 0.0357 0.0137 7 9.000 1 1.0 2 56 TCCATCTGTCCTCTTTGGGG GGGGGGGCATGGGACTCACA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20189584 20189584 T TGG 73 2 28 37 1 1 T/+2 0.0274 2;2 25.5 1 42.0 1 60.0 4.000 0.0357 0.0137 7 9.000 1 1.0 2 56 TCCATCTGTCCTCTTTGGGG GGGGGGGCATGGGACTCACA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20222449 20222449 G C 102 2 55 45 0 2 G/C 0.0196 2;0 6.5 1 42.0 0 60.0 4.000 0.0222 0 1 1.000 1 2.0 2 90 CATTATTATTATTATTATTA CATTTTTCATTAAATGGTAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20222429 20222432 CATT C 90 2 43 45 1 1 A/-3 0.0222 2;2 44.5 1 42.0 0 60.0 4.000 0.0238 0 16 6.000 3 1.5 2 84 ACTGCTTGTGAGTATAAACA ATTATTATTATTATTAGCAT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20189187 20189187 A G 63 3 23 37 3 0 A/G 0.0476 2;0 6.0 0 38.7 1 60.0 6.000 0.0492 0 0 2.000 2 2.0 3 61 GCCCCTTCCACTTAGCATCT TATAGCTTTTCAGTATTTAG 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20222063 20222063 C CA 55 3 17 32 2 1 C/+1 0.0545 2;2 26.5 1 40.0 1 62.0 6.000 0.0577 0 6 7.000 1 0 3 52 TTTTTTAATGTATTAAAATT AAAAAATGCCTCTATCCCCC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20222063 20222063 C CA 55 3 17 32 2 1 C/+1 0.0545 2;2 25.7 1 38.7 1 60.0 6.000 0.0577 0 6 7.000 1 0 3 52 TTTTTTAATGTATTAAAATT AAAAAATGCCTCTATCCCCC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20156480 20156480 T TTCTGCTTTTTTAATGGGTACGTCATCTGGTAGAAAATAATTGTGATTTATTACAAAAGAAACTATCATCAGAGTGAGCAGACAACCTACAGAATGCGAGAAAATTTTTGCAATCTATCCATCTGACAAAGGTCTGATATCCAGAATCTATGAGGAACTTAAACAAATTTGCAAGAAAAAAACAACCCCATTAAAAAGTGGGCAAAGGACCATGAACAGACACTTCTCAAAAGAAGACATTCATGCAGCCAACAAACATGAAAAAAAGCTCAAAATCACTGATCATTAGTGAAATGCAAATCAAAAACCACAAAGAAATAGCATCTCATGCCAATCAGAATGGCGATTATTAAAAAGTCAAGCAACAACAGATGCTGGCGAGACTATGGAGAAATAGGAACAATTTTACACTGTTGGTGGGTGTGTAAATTAGTCCAACCATTGTGGAAGACAGTGTGCTGATTCCTCAAAAACCTAGAACCAGAGATACCATTTGACCCAGCAATTCCATTTCTGGGTATATACCCAAAGGAATATAAATCATTCTATTTTACATGCACGCATATGTTCATTGCGCACCGTTCATACTTGCAAAGACATGGAATTAACCCAAATGCCCATCACTGATAGACTGGATAAAGAAAATGTGATACCATAGAATACTATG 92 3 46 44 3 0 T/+666 0.0326 2;0 57.0 1 42.0 1 60.0 6.000 0.0341 0.0326 70 2.000 1 0 3 88 CCACTGCGCCTGGCTGGGGC TCTGCTTTTTTAATGGGTAC 20:20156209-20234556 Insertion 0 3-18-2 NA24385_chr_20_20156208_20234556 testbed 20 20156494 20156495 TG T 94 2 46 46 2 0 G/-1 0.0213 2;0 21.0 0 42.0 0 60.0 4.000 0.0220 0 2 3.000 1 0 2 91 TGGGGCTTCTGCTTTTTTAA GGTACGTCATCTGGTAGAAA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20222117 20222117 G GT 57 2 35 19 0 2 G/+1 0.0351 2;0 59.9 0 43.4 0 62.0 4.000 0.0364 0 6 7.000 1 0.5 2 55 ACTATATCATTATAGGTTAG TTTTTTAAAAAACTACTTTG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20222117 20222117 G GT 57 2 35 19 0 2 G/+1 0.0351 2;0 58.0 0 42.0 0 60.0 4.000 0.0364 0 6 7.000 1 0.5 2 55 ACTATATCATTATAGGTTAG TTTTTTAAAAAACTACTTTG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20156555 20156555 G A 101 2 42 56 0 2 G/A 0.0198 2;0 68.0 0 42.0 0 60.0 4.000 0.0213 0 0 1.000 1 1.0 2 94 AAAGAAACTATCATCAGAGT AGCAGACAACCTACAGAATG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20156664 20156665 AC A 96 2 30 64 2 0 C/-1 0.0208 2;0 36.0 0 42.0 0 60.0 4.000 0.0217 0 3 4.000 1 0 2 92 AAATTTGCAAGAAAAAAACA CCCATTAAAAAGTGGGCAAA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20156671 20156671 T TA 94 2 32 58 0 2 T/+1 0.0213 2;0 30.8 1 34.8 1 45.7 4.000 0.0253 0.0106 5 6.000 1 0.5 2 79 CAAGAAAAAAACAACCCCAT AAAAAGTGGGCAAAGGACCA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20156671 20156671 T TA 94 2 32 58 0 2 T/+1 0.0213 2;0 30.0 1 33.9 1 44.5 4.000 0.0253 0.0106 5 6.000 1 0.5 2 79 CAAGAAAAAAACAACCCCAT AAAAAGTGGGCAAAGGACCA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20189433 20189433 C CTGCCCGTGCAGGCCACCTGCCCTTCAGCTCACCCAGCACATCCATCCACTGTGTCTAGGGGACTCACATGAAGCTCTTGGAGGGCTCCCAAACCCTTTCTGTGACTTAAAGCAAAGGACAAGGCACCCCCTCCATCTGTCCTCTTTGGGGTGGGGGGGCATGGGACTCACAGCACGTCAACAGTTCTCCTGGAAGAAATCTTCAAAAAAGCCCCTTCTGCATGTACTCATCTAACCCTTTCATGTCTTCATTATAAGTTAGGAGTTAAAAGGCATTTAATCGGTGCTTGCCACTGACTTTGGCATTTTTATAAGGGGGCTCCTTTGGAATGTAGCATCTATTTTCTTCATGCCGAGGCCACACAGCTGCTAAGTCACGGTTTGGGGACTAAACAGTGTGATGTCAGAGCCCACGATTCACCATTGCTGTGTGTAGGCCAGTTCCCTCATGTTGGT 110 5 36 55 4 1 C/+455 0.0455 2;2 34.2 1 34.6 1 60.0 10.000 0.0543 0.0455 70 2.000 1 0.4 5 92 CCTCTGTGGGTCAGCAGGTT TGCCCGTGCAGGCCACCTGC 20:20156209-20234556 Insertion 0 5-10-2 -NA24385_chr_20_20156208_20234556 testbed 20 20156654 20156654 G GA 93 2 33 55 0 2 G/+1 0.0215 2;0 41.6 1 43.7 0 62.4 4.000 0.0235 0 7 8.000 1 1.0 2 85 GAACTTAAACAAATTTGCAA AAAAAAACAACCCCATTAAA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20156654 20156654 G GA 93 2 33 55 0 2 G/+1 0.0215 2;0 40.0 1 42.0 0 60.0 4.000 0.0235 0 7 8.000 1 1.0 2 85 GAACTTAAACAAATTTGCAA AAAAAAACAACCCCATTAAA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20222148 20222149 GA G 64 2 36 26 2 0 A/-1 0.0312 2;0 51.0 0 42.0 0 60.0 4.000 0.0323 0 2 4.000 1 0 2 62 AACTACTTTGTTGTTTTGGG AATTTTAAATTGTACAACAG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20222719 20222720 AT A 107 2 57 48 2 0 T/-1 0.0187 2;0 52.5 1 42.0 0 60.0 4.000 0.0189 0 1 2.000 1 2.0 2 106 TGTCAGGTTCAGTTGAGTTT TGCATTTCTGGCCTGCGCCA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20157199 20157199 A T 81 2 33 46 0 2 A/T 0.0247 2;0 51.0 0 42.0 0 60.0 4.000 0.0250 0 0 3.000 1 1.0 2 80 AATAAGATCATGTCCTTTGC GGGACATGGATGGAGCTGGA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20190035 20190035 C CA 89 2 33 53 0 2 C/+1 0.0225 2;0 17.5 0 43.1 0 61.6 4.000 0.0244 0 5 6.000 1 1.0 2 82 AAAGTTACTATCTCTTTAAT AAAAAGCATAAAGTTTTAGA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20190035 20190035 C CA 89 2 33 53 0 2 C/+1 0.0225 2;0 17.0 0 42.0 0 60.0 4.000 0.0244 0 5 6.000 1 1.0 2 82 AAAGTTACTATCTCTTTAAT AAAAAGCATAAAGTTTTAGA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20222808 20222808 T A 88 4 38 46 2 2 T/A 0.0455 2;2 19.0 1 38.2 1 60.0 8.000 0.0494 0 0 3.000 1 1.0 4 81 AATTGATAGCAGTTCCACAT TGGAACATTTCCAATCTTCT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20157276 20157276 C A 64 28 25 11 20 8 C/A 0.4375 2;2 32.7 1 35.3 1 58.6 6.000 0.4068 0.0312 0 1.000 1 1.6 24 59 AACCAAACACCGCACGTTCT ACTTATAAGTGGGAGCTGAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20157350 20157350 T G 75 3 44 28 2 1 T/G 0.0400 2;2 15.0 1 31.7 1 60.0 2.000 0.0339 0.0267 0 4.000 1 2.7 2 59 GAGCGGGGAACAACACACAT GGGGCCTGTCAGTGGGGGTC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20190126 20190126 T TAAGCAACACACAGCAATGGTGCACCATTGCTGTATGTTGCTTAGATA 93 4 41 45 3 1 T/+47 0.0430 2;2 20.7 1 42.3 1 62.8 8.000 0.0460 0.0430 8 3.000 1 0.5 4 87 TGGCAATATGTTGCTTTATC AAGCAACATACAGAGTACAG 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20222875 20222875 C CT 99 3 27 67 1 2 C/+1 0.0303 2;2 30.0 1 38.2 1 62.0 6.000 0.0337 0 6 7.000 1 1.7 3 89 CTCTGACTTGGTGAAGGCTT TTTTTTGGCATTTGGTTGAT 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20222929 20222929 G GA 93 3 31 55 2 1 G/+1 0.0323 2;2 40.7 1 44.2 0 63.2 6.000 0.0357 0 9 10.000 1 0.4 3 84 TGAACTAAGAAGAGATTTTA AAAAAAAAATCTCATCAGCA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20190126 20190126 T TAAGCAACACACAGCAATGGTGCACCATTGCTGTATGTTGCTTAGATA 93 4 41 45 3 1 T/+47 0.0430 2;2 19.8 1 40.4 1 60.0 8.000 0.0460 0.0430 8 3.000 1 0.5 4 87 TGGCAATATGTTGCTTTATC AAGCAACATACAGAGTACAG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20222875 20222875 C CT 99 3 27 67 1 2 C/+1 0.0303 2;2 29.0 1 37.0 1 60.0 6.000 0.0337 0 6 7.000 1 1.7 3 89 CTCTGACTTGGTGAAGGCTT TTTTTTGGCATTTGGTTGAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20222929 20222929 G GA 93 3 31 55 2 1 G/+1 0.0323 2;2 38.7 1 42.0 0 60.0 6.000 0.0357 0 9 10.000 1 0.4 3 84 TGAACTAAGAAGAGATTTTA AAAAAAAAATCTCATCAGCA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20156947 20156948 CA C 85 2 48 35 0 2 A/-1 0.0235 2;0 62.0 0 42.0 0 60.0 4.000 0.0244 0 4 5.000 1 0 2 82 AAGACAGTGTGCTGATTCCT AAAACCTAGAACCAGAGATA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20189699 20189700 TA T 75 2 39 34 0 2 A/-1 0.0267 2;0 71.0 0 39.5 1 60.0 4.000 0.0294 0 3 4.000 1 3.0 2 68 CTTCATTATAAGTTAGGAGT AAAGGCATTTAATCGGTGCT 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20189699 20189699 T TA 76 2 38 36 2 0 T/+1 0.0263 2;0 12.2 0 42.8 0 61.2 4.000 0.0294 0 4 5.000 1 0.5 2 68 CTTCATTATAAGTTAGGAGT AAAAGGCATTTAATCGGTGC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20189699 20189699 T TA 76 2 38 36 2 0 T/+1 0.0263 2;0 12.0 0 42.0 0 60.0 4.000 0.0294 0 4 5.000 1 0.5 2 68 CTTCATTATAAGTTAGGAGT AAAAGGCATTTAATCGGTGC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20156941 20156942 AT A 89 2 47 40 1 1 T/-1 0.0225 2;2 12.5 1 33.2 1 60.0 4.000 0.0241 0.0112 1 2.000 1 0 2 83 TTGTGGAAGACAGTGTGCTG TCCTCAAAAACCTAGAACCA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20157054 20157054 C CA 105 105 0 0 66 39 +1/+1 1.0000 0;2 36.8 1 39.1 1 59.2 25.250 1.0000 0.0476 0 2.000 2 0.7 101 101 ATGCACGCATATGTTCATTG GCACCGTTCATACTTGCAAA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20157006 20157006 C A 110 5 70 35 4 1 C/A 0.0455 2;2 37.6 1 29.6 1 60.0 1.500 0.0300 0 1 3.000 1 2.4 3 100 TCCATTTCTGGGTATATACC AAAGGAATATAAATCATTCT 20:20156209-20234556 SNV 0 0 @@ -139,24 +139,24 @@ NA24385_chr_20_20156208_20234556 testbed 20 20157090 20157090 C T 108 6 56 46 3 NA24385_chr_20_20156208_20234556 testbed 20 20157096 20157945 C 101 2 52 50 2 0 C/ 0.0198 2;0 57.0 1 40.2 1 60.0 4.000 0.0200 0.0198 0 3.000 1 0 2 100 ACATGGAATTAACCCAAATG TCATTTGGAAAGGAAAGAAA 20:20156209-20234556 INV 0 2-2-1 NA24385_chr_20_20156208_20234556 testbed 20 20222601 20222601 A T 85 4 41 40 0 4 A/T 0.0471 2;0 10.0 0 32.0 1 60.0 3.000 0.0423 0 0 1.000 1 3.5 3 71 TTAGAGGATAAGATGTGCTC GTTTTCTTCTTATCAAATAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20189940 20189940 C T 100 2 39 59 1 1 C/T 0.0200 2;2 24.5 1 39.5 1 60.0 4.000 0.0206 0 0 2.000 1 1.0 2 97 ACAGTGCTACCATATCTGCC TTATTATTTTTCAGCACATT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20189946 20189946 A AT 94 2 37 53 1 1 A/+1 0.0213 2;2 40.0 1 43.1 0 61.6 4.000 0.0244 0 5 6.000 1 1.0 2 82 CTACCATATCTGCCCTTATT TTTTTCAGCACATTTGTTTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20189946 20189946 A AT 94 2 37 53 1 1 A/+1 0.0213 2;2 39.0 1 42.0 0 60.0 4.000 0.0244 0 5 6.000 1 1.0 2 82 CTACCATATCTGCCCTTATT TTTTTCAGCACATTTGTTTT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20222702 20222702 C T 105 4 49 52 0 4 C/T 0.0381 2;0 18.0 0 39.5 1 60.0 8.000 0.0392 0 0 1.000 1 3.5 4 102 ATTGAGCTATTTTTAAATGT AGGTTCAGTTGAGTTTATTG 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20189904 20189904 A AT 93 2 37 51 1 1 A/+1 0.0215 2;2 17.5 1 30.3 1 61.6 4.000 0.0244 0 5 6.000 1 0.5 2 82 TTGGTTAAGTTTTTATCCCA TTTTTATCACGATGAACAGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20189904 20189904 A AT 93 2 37 51 1 1 A/+1 0.0215 2;2 17.0 1 29.5 1 60.0 4.000 0.0244 0 5 6.000 1 0.5 2 82 TTGGTTAAGTTTTTATCCCA TTTTTATCACGATGAACAGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20157736 20157736 A G 80 79 0 0 49 30 G/G 0.9875 0;2 32.3 1 38.8 1 59.9 12.167 1.0000 0.0500 0 2.000 2 3.6 73 73 GAGTTATTCATTTCTTCTGT TATAAATATAACCTTTTGGT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20223274 20223275 GA G 81 2 36 43 1 1 A/-1 0.0247 2;2 30.0 1 42.0 1 60.0 4.000 0.0250 0.0123 4 5.000 1 0.5 2 80 TACCTATGAAATGTGGATCA AAAACCGGTCTCTTCCCTAT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20157713 20157713 G A 71 71 0 0 40 31 A/A 1.0000 0;2 29.2 1 37.6 1 59.7 10.833 1.0000 0.1268 0 1.000 1 3.4 65 65 TCTAGTAATTTTTTGGTACT CTGAGTTATTCATTTCTTCT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20157796 20157796 A AT 89 8 45 28 4 4 A/+1 0.0899 2;2 29.0 1 40.3 1 62.8 7.000 0.0933 0.0225 8 9.000 1 2.5 7 75 GGACTATAACAGTTTTACAT TTTTTTTTCTATTTATACCA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20157796 20157796 A AT 89 8 45 28 4 4 A/+1 0.0899 2;2 27.8 1 38.5 1 60.0 7.000 0.0933 0.0225 8 9.000 1 2.5 7 75 GGACTATAACAGTTTTACAT TTTTTTTTCTATTTATACCA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20157767 20157767 C A 90 90 0 0 54 36 A/A 1.0000 0;2 37.6 1 37.5 1 59.5 17.000 1.0000 0.0333 0 1.000 1 3.1 85 85 ACCTTTTGGTTAGATTTGTA GAATATGTGGACTATAACAG 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20157863 20157863 C CT 88 4 42 40 4 0 C/+1 0.0455 2;0 33.8 1 43.4 0 62.0 8.000 0.0488 0 6 7.000 1 0.5 4 82 TTTCTAGTTCCTGGCCCTTT TTTTTTCATACACACTTTCC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20157863 20157863 C CT 88 4 42 40 4 0 C/+1 0.0455 2;0 32.8 1 42.0 0 60.0 8.000 0.0488 0 6 7.000 1 0.5 4 82 TTTCTAGTTCCTGGCCCTTT TTTTTTCATACACACTTTCC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20190611 20190611 A T 50 4 27 19 3 1 A/T 0.0800 2;2 42.8 1 39.5 1 60.0 8.000 0.0851 0 0 1.000 1 1.8 4 47 GCTTGCTGCAGAAGAATCCC TCCTCACAGCCTTGAGGCCA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20223466 20223466 T A 71 2 32 36 1 1 T/A 0.0282 2;2 22.0 1 42.0 0 60.0 4.000 0.0290 0 1 1.000 1 1.5 2 69 CTGATTTGAGTAACTGTGTG ATCTGAATGTAATAAAGCTA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20190686 20191197 T 117 2 29 32 0 2 T/ 0.0171 2;0 43.0 1 41.0 1 60.0 4.000 0.0333 0.0171 1 4.000 1 2.5 2 60 TGCTCTCTTCCTCTCCGCTT TTGGCAGAAATGAAACACAT 20:20156209-20234556 INV 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20157500 20157500 C T 76 34 16 26 12 22 C/T 0.4474 2;2 36.1 1 39.9 1 60.0 33.000 0.4583 0.0263 1 1.000 1 2.4 33 72 TTTGTCCTGCACATGTATCC AGAACTTAAAATAGAATTAA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20190237 20190237 A AT 79 2 36 37 2 0 A/+1 0.0253 2;0 34.3 0 43.7 0 62.4 4.000 0.0294 0 7 8.000 1 1.0 2 68 GATACATCTTTTATTTTCCT TTTTTTTCTAATTGAGCTGA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20190237 20190237 A AT 79 2 36 37 2 0 A/+1 0.0253 2;0 33.0 0 42.0 0 60.0 4.000 0.0294 0 7 8.000 1 1.0 2 68 GATACATCTTTTATTTTCCT TTTTTTTCTAATTGAGCTGA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20223005 20223005 G T 69 4 41 24 0 4 G/T 0.0580 2;0 10.2 1 25.5 1 60.0 3.000 0.0462 0.0435 0 5.000 1 3.5 3 65 TTTACTGACTTTAACCAGGG GTGGATTTGCAGCAAGAGCA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20157441 20157441 A G 80 80 0 0 34 46 G/G 1.0000 0;2 39.1 1 39.6 1 59.8 39.000 1.0000 0.0250 0 2.000 1 2.0 78 78 TACCTAGGTGATGGGTTGAC GGTGCAACAAACCACCGTGG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20222978 20222978 A G 68 31 16 21 17 14 A/G 0.4559 2;2 37.4 1 39.3 1 60.0 30.000 0.4688 0 0 1.000 1 1.9 30 64 ATGAAAAGATCAGCTCACCC TGAAATTTTACTGACTTTAA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20157553 20157553 T TCTTCCAAATACAGATTTTCTATAAAACATATAAGCCGTACCTACTTCACTTTTTATTATTTTATTTTATTTTATATTTATTTCTTTTTCTAGACAATTTTAGAAGTTTAAAGGCCACACCTACTTTAAA 72 3 20 34 2 1 T/+129 0.0417 2;2 58.4 1 49.6 1 74.0 6.000 0.0577 0.0417 36 3.000 1 0.8 3 52 AAAAGAACTGTGATTATCTG CTTCCAAATACAGATTTTCT 20:20156209-20234556 Insertion 0 3-12-2 +NA24385_chr_20_20156208_20234556 testbed 20 20157553 20157553 T TCTTCCAAATACAGATTTTCTATAAAACATATAAGCCGTACCTACTTCACTTTTTATTATTTTATTTTATTTTATATTTATTTCTTTTTCTAGACAATTTTAGAAGTTTAAAGGCCACACCTACTTTAAA 72 3 20 34 2 1 T/+129 0.0417 2;2 47.3 1 40.2 1 60.0 6.000 0.0577 0.0417 36 3.000 1 0.8 3 52 AAAAGAACTGTGATTATCTG CTTCCAAATACAGATTTTCT 20:20156209-20234556 Insertion 0 3-12-2 NA24385_chr_20_20156208_20234556 testbed 20 20190320 20190321 TA T 64 2 29 31 0 2 A/-1 0.0312 2;0 30.0 0 42.0 0 60.0 4.000 0.0339 0 2 3.000 1 0 2 59 TAACCTCCATCAATTCTGGG AATTTAATCATTTAATGTTT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20190294 20190295 TA T 77 2 33 42 0 2 A/-1 0.0260 2;0 25.5 1 39.5 1 60.0 4.000 0.0274 0 3 4.000 1 0.5 2 73 TTTATTCCACCTGATGGGAG AAAGTAACCTCCATCAATTC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20190272 20190272 C T 75 2 31 42 2 0 C/T 0.0267 2;0 35.0 1 39.5 1 60.0 4.000 0.0286 0 3 2.000 1 1.5 2 70 AGCTGAGTCTCTGCTTTGAG CTTTATTCCACCTGATGGGA 20:20156209-20234556 SNV 0 0 @@ -168,8 +168,8 @@ NA24385_chr_20_20156208_20234556 testbed 20 20157661 20157662 TA T 72 2 38 32 0 NA24385_chr_20_20156208_20234556 testbed 20 20158266 20158267 CA C 98 2 49 47 0 2 A/-1 0.0204 2;0 45.0 0 42.0 0 60.0 4.000 0.0215 0 0 3.000 1 2.5 2 93 TACATGTGCCAGCTTTATCC GGTGCTGGGGAAACAGAAAT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20191003 20191003 A G 84 36 35 12 19 17 A/G 0.4286 2;2 29.2 1 41.0 1 60.0 72.000 0.4444 0.0476 1 1.000 1 1.2 36 81 CTTCTGCATCTGTCATTGGA GCATCAACTTTGACTTTTGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20223755 20223756 GA G 75 2 37 36 0 2 A/-1 0.0267 2;0 43.0 0 42.0 0 55.0 4.000 0.0286 0 1 2.000 1 1.5 2 70 GAGGCCTCACAATCATGGTG AGGCAAGGAGGAACAACTCA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20158318 20158318 C CG 83 3 41 32 1 2 C/+1 0.0361 2;2 41.7 1 43.4 0 62.0 6.000 0.0455 0 6 7.000 1 0.7 3 66 GATAGAAATTCTTGCCCTCA GGGGGGCCTGCATTCTAGAT 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20191050 20191050 C CA 82 3 56 22 2 1 C/+1 0.0366 2;2 17.9 1 38.5 1 62.0 6.000 0.0385 0.0122 6 7.000 1 0.3 3 78 ACAGTCAGGCTTTTCAGACT AAAAAACCTTCTTGCAACCC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20158318 20158318 C CG 83 3 41 32 1 2 C/+1 0.0361 2;2 40.3 1 42.0 0 60.0 6.000 0.0455 0 6 7.000 1 0.7 3 66 GATAGAAATTCTTGCCCTCA GGGGGGCCTGCATTCTAGAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20191050 20191050 C CA 82 3 56 22 2 1 C/+1 0.0366 2;2 17.3 1 37.3 1 60.0 6.000 0.0385 0.0122 6 7.000 1 0.3 3 78 ACAGTCAGGCTTTTCAGACT AAAAAACCTTCTTGCAACCC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20191050 20191052 CAA C 82 2 57 23 2 0 A/-2 0.0244 2;0 30.0 0 39.5 1 60.0 4.000 0.0253 0 4 6.000 1 0 2 79 ACAGTCAGGCTTTTCAGACT AAAACCTTCTTGCAACCCGT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20191158 20191159 GT G 105 2 42 60 0 2 T/-1 0.0190 2;0 36.0 0 39.5 1 60.0 4.000 0.0213 0 1 2.000 1 0.5 2 94 AGGCCTGGTGTCCCCTGGCT TGCCTGCAGCATCAGGAGGG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20158462 20158464 TTA T 71 67 2 2 39 28 T/-2 0.9437 2;2 34.3 1 39.2 1 59.9 21.333 0.9412 0.0563 1 4.000 1 1.8 64 68 AGTGGGAGAGGGGCTGCCAT TTGCCTAGGGTGACAGGAAG 20:20156209-20234556 Deletion 0 0 @@ -187,15 +187,15 @@ NA24385_chr_20_20156208_20234556 testbed 20 20190785 20190785 T G 80 4 35 40 0 4 NA24385_chr_20_20156208_20234556 testbed 20 20190881 20190882 GC G 63 2 38 23 0 2 C/-1 0.0317 2;0 17.0 0 42.0 0 60.0 4.000 0.0323 0 1 2.000 1 2.0 2 62 CTTCCACTTTCCTGGCCTTA CAGAGGAAGGAGAGGGCTGC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20158115 20158116 AT A 77 2 41 33 0 2 T/-1 0.0260 2;0 42.0 0 42.0 0 60.0 4.000 0.0282 0 0 1.000 1 0 2 71 CCATCCTGAAATTGACGTCG CACATTGACAAAATGGCCAC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20190866 20191271 A 89 2 43 30 0 2 A/ 0.0225 2;0 35.5 1 41.6 1 60.0 4.000 0.0286 0.0225 1 3.000 1 0 2 70 GATCCTGCCCCCTTCCTTCC AACACAGACCACGAATGCCC 20:20156209-20234556 INV 0 2-0-0 -NA24385_chr_20_20156208_20234556 testbed 20 20190852 20190852 G GC 70 6 35 29 4 2 G/+1 0.0857 2;2 52.9 1 43.1 0 61.6 12.000 0.0882 0 5 6.000 1 0.2 6 68 AAAATCTTTGTAGGGATCCT CCCCCTTCCTTCCACTTTCC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20190852 20190852 G GC 70 6 35 29 4 2 G/+1 0.0857 2;2 51.5 1 42.0 0 60.0 12.000 0.0882 0 5 6.000 1 0.2 6 68 AAAATCTTTGTAGGGATCCT CCCCCTTCCTTCCACTTTCC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20190850 20190851 CT C 70 4 39 27 0 4 T/-1 0.0571 2;0 20.0 0 42.0 0 60.0 8.000 0.0597 0 0 2.000 1 1.0 4 67 CCAAAATCTTTGTAGGGATC GCCCCCTTCCTTCCACTTTC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20158093 20158093 C T 70 22 27 21 12 10 C/T 0.3143 2;2 34.9 1 40.6 1 60.0 21.000 0.3043 0.0143 0 2.000 4 2.0 21 69 TTTCCTTTCTTCCACCCTCC TCCATCCTGAAATTGACGTC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20158205 20158205 G GC 90 2 34 52 0 2 G/+1 0.0222 2;0 27.2 1 43.1 0 61.6 4.000 0.0238 0 5 6.000 1 2.1 2 84 TTCCCAGAGACCCCAGCAAA CCCCCTCATTCATCCAGTAA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20158205 20158205 G GC 90 2 34 52 0 2 G/+1 0.0222 2;0 26.5 1 42.0 0 60.0 4.000 0.0238 0 5 6.000 1 2.1 2 84 TTCCCAGAGACCCCAGCAAA CCCCCTCATTCATCCAGTAA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20158175 20158176 CT C 85 85 0 0 32 53 -1/-1 1.0000 0;2 34.5 1 40.2 1 60.0 84.000 1.0000 0.1647 1 2.000 1 0.9 84 84 AGGAGAGTGCTGGCTGATGT TGTTTTCCTTCCCAGAGACC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20223722 20223722 C A 74 3 31 40 2 1 C/A 0.0405 2;2 25.3 1 28.3 1 56.7 2.000 0.0299 0.0270 1 2.000 1 2.0 2 67 GGTTTAATGGACTTACAGTT CACATGGCTGGGGAGGCCTC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20190936 20190936 T A 71 3 37 28 3 0 T/A 0.0423 2;0 10.0 0 42.0 0 60.0 6.000 0.0455 0 0 3.000 1 1.0 3 66 CTCCTTCTTCCCCTCTGGCT TCCTCCTCCTGGTCCTCAGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20224303 20224303 A T 99 52 28 17 27 25 A/T 0.5253 2;2 31.2 1 35.4 1 57.2 5.500 0.5366 0 0 1.000 1 1.6 44 82 GTTGGTCAGGCTGGTCTCAA CTCCTGACCTCACGTGATCC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20224378 20224378 G GC 97 9 43 43 4 5 G/+1 0.0928 2;2 22.5 1 39.4 1 62.0 18.000 0.1034 0.0206 6 7.000 1 1.1 9 87 GGTATGAGCCACCATGCCTG CCCCCCAAAGTCTTAAATCA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20224378 20224378 G GC 97 9 43 43 4 5 G/+1 0.0928 2;2 21.8 1 38.1 1 60.0 18.000 0.1034 0.0206 6 7.000 1 1.1 9 87 GGTATGAGCCACCATGCCTG CCCCCCAAAGTCTTAAATCA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20224344 20224344 G A 94 2 50 41 0 2 G/A 0.0213 2;0 62.5 1 39.5 1 60.0 4.000 0.0222 0 0 1.000 1 4.5 2 90 ACCTGCCTCGGCCTCCCAAA TGCTGGGATTACAGGTATGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20158901 20158902 CT C 85 2 35 47 1 1 T/-1 0.0235 2;2 37.5 1 42.0 0 60.0 4.000 0.0244 0 2 3.000 1 0 2 82 AATGTTTATGTTAACTTGCA TTAATTGTGGATAAATTAAA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20191638 20191638 C CTTCCTGGAAGATGTGAAAGATCAGGAAAAACAACCGAGAACCTAGAGAGGTTTTACATTCAAATTAAACTGAGATGGATTAAAAGCCTTCCACAGTTTAGTAATTTTCCTAAAGCAATTTGAGTTTGGTTATCTTTATTTGCACACTCATCAAATCCAGAGGGAAAATGGCATTTGAGTTCATCAGAGGCAGAGGATTAAATGGGCCTTGGAAAGTGCAGTACCTGGTTAGCCGGGGGCGCGGTCCTCCCAAAGGGCTGCCCCACGTGGCCTTGGTCGAGTGGGCAGGGACTGCCT 76 2 17 29 2 0 C/+296 0.0263 2;0 38.0 1 39.5 1 60.0 4.000 0.0444 0.0263 70 3.000 1 0 2 45 ATTTAAAAAATGGGTTTTGC TTCCTGGAAGATGTGAAAGA 20:20156209-20234556 Insertion 0 2-2-1 @@ -208,7 +208,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20158563 20158563 C T 78 32 27 18 10 NA24385_chr_20_20156208_20234556 testbed 20 20224083 20224090 TTTTTTTC CT 57 3 26 27 2 1 TTC/-6CT 0.0526 2;2 25.3 1 38.7 1 60.0 6.000 0.0600 0.0351 1 11.000 1 0.3 3 50 AACAGTCCCCCAAGTCTTTT TTTTTTTTGAGATGGAGTTT 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20158556 20158556 A T 82 3 41 38 1 2 A/T 0.0366 2;2 6.3 1 38.7 1 60.0 6.000 0.0390 0 2 2.000 2 2.0 3 77 GGTGAGGGCACAGGTCCTCC CACCTACTCTTTAAAAATGT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20191297 20191297 G GGGCTGGCCGACTCCCTCTGGCTCATGGAAGAATTATAAAAATGTGATTCCATTCATTATGAAGTGATTGGAGGTCAGTAGATGCATATAGAATAAAGTACAGTGTCATAAGCCTAACTTTCAGGCCTTTTTATTAAAACTTTCACTTGTTACATCCCGTTAATAAATTCTAGTTTTACAAATGGGATATGGGCCAGGCACAGTGGCTCATACCTGTCATCCCACACTTTGGGAGGCTGAAATAGGAGGATCACTTGAAGCCAGGAGTTTGAGACCAGCCTA 79 3 35 43 3 0 G/+281 0.0380 2;0 41.0 1 41.9 1 60.0 6.000 0.0390 0.0380 70 4.000 1 0 3 77 AGACCACGAATGCCCCTCTG GGCTGGCCGACTCCCTCTGG 20:20156209-20234556 Insertion 0 3-0-0 -NA24385_chr_20_20156208_20234556 testbed 20 20224078 20224078 C CT 56 3 27 24 0 3 C/+1 0.0536 2;0 29.9 1 41.2 1 64.0 6.000 0.0667 0 11 12.000 1 0.4 3 45 TTCTCAACAGTCCCCCAAGT TTTTTTTTTTTCTTTTTTTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20224078 20224078 C CT 56 3 27 24 0 3 C/+1 0.0536 2;0 28.0 1 38.7 1 60.0 6.000 0.0667 0 11 12.000 1 0.4 3 45 TTCTCAACAGTCCCCCAAGT TTTTTTTTTTTCTTTTTTTT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20191378 20191378 A T 77 2 43 32 0 2 A/T 0.0260 2;0 16.0 0 42.0 0 60.0 4.000 0.0278 0 0 1.000 1 1.0 2 72 AAGTGATTGGAGGTCAGTAG TGCATATAGAATAAAGTACA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20224131 20224132 GA G 48 2 22 24 0 2 A/-1 0.0417 2;0 62.0 0 42.0 0 60.0 4.000 0.0476 0 0 3.000 1 1.0 2 42 CACTCTTGTTGCCCAGGCTG GTGCAATGGTGTGATCTTGA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20224141 20224141 G T 49 5 19 25 5 0 G/T 0.1020 2;0 15.2 1 31.8 1 59.6 1.500 0.0667 0.0612 0 2.000 2 2.8 3 45 GCCCAGGCTGGAGTGCAATG TGTGATCTTGACTCACTGCA 20:20156209-20234556 SNV 0 0 @@ -217,7 +217,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20192049 20192049 G A 84 2 37 44 1 1 NA24385_chr_20_20156208_20234556 testbed 20 20159323 20159323 C CG 70 3 1 4 2 1 C/+1 0.0429 2;2 25.3 1 38.7 1 60.0 6.000 0.4286 0.0143 0 7.000 1 1.0 3 7 GTTGTCCTTTAATCGATTCT CCCCCCACCATTTCTGTTTT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20159322 20159323 TC CCG 135 57 38 37 32 25 CTC/+4 0.4222 2;2 42.2 1 39.8 1 60.0 114.000 0.4351 0 0 0 0 1.8 57 131 AGTTGTCCTTTAATCGATTC CCCCCCACCATTTCTGTTTT 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20159322 20159322 T CCG 80 4 38 37 0 4 TCT/+5 0.0500 2;0 22.8 1 41.0 1 60.0 8.000 0.0519 0.0375 0 0 0 0 4 77 AGTTGTCCTTTAATCGATTC CCCCCCCACCATTTCTGTTT 20:20156209-20234556 Complex 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20192079 20192079 A ATGACATCAGTCATCT 81 4 33 43 2 2 A/+15 0.0494 2;2 12.2 1 40.3 1 61.2 8.000 0.0541 0.0494 4 2.000 1 0.8 4 74 GACCATTAAGCTTAGTCAAG TGACTGATGTCATGATCTCC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20192079 20192079 A ATGACATCAGTCATCT 81 4 33 43 2 2 A/+15 0.0494 2;2 12.0 1 39.5 1 60.0 8.000 0.0541 0.0494 4 2.000 1 0.8 4 74 GACCATTAAGCTTAGTCAAG TGACTGATGTCATGATCTCC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20159379 20159379 A T 87 2 44 41 2 0 A/T 0.0230 2;0 25.0 0 42.0 0 60.0 4.000 0.0241 0 1 2.000 1 1.0 2 83 AGTGGCTCACACAGAAAATT CCATTGTTCCTATTTCAGGC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20224924 20224924 A T 71 2 27 39 1 1 A/T 0.0282 2;2 18.0 1 37.0 1 60.0 4.000 0.0339 0 0 2.000 2 1.0 2 59 TGACTCCACATTTCCCTTCC CACTGCCCTAGCAGAAGTTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20192214 20192214 A T 66 4 29 33 2 2 A/T 0.0606 2;2 9.0 1 42.0 0 60.0 8.000 0.0625 0 0 1.000 1 1.0 4 64 GAGCCATAAAGATTTTTTTT CTGCCACTTTGAGATATCAA 20:20156209-20234556 SNV 0 0 @@ -229,7 +229,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20159011 20159011 C T 72 2 39 31 2 0 NA24385_chr_20_20156208_20234556 testbed 20 20224586 20224586 C T 80 2 29 48 0 2 C/T 0.0250 2;0 20.0 1 42.0 1 41.5 4.000 0.0260 0.0125 1 2.000 1 3.0 2 77 AAACAAAGGGGTTACAGGCT CATGCAAGTCCGAAATCCAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20159122 20159123 GC G 78 2 30 46 2 0 C/-1 0.0256 2;0 45.0 0 42.0 0 60.0 4.000 0.0290 0 1 2.000 1 0 2 69 CTGGTTGCCCACTCCATCTT CACCCTTTCACATGATGCTT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20159222 20159223 AT A 74 3 29 42 0 3 T/-1 0.0405 2;0 62.0 0 42.0 0 60.0 6.000 0.0423 0 5 6.000 1 0 3 71 TATTTATTGTGCTAGGAATT TTTTTATAAATAAATATTTA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20159222 20159222 A AT 76 4 29 42 0 4 A/+1 0.0526 2;0 22.7 1 42.1 1 62.0 8.000 0.0556 0 6 7.000 1 1.6 4 72 TATTTATTGTGCTAGGAATT TTTTTTATAAATAAATATTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20159222 20159222 A AT 76 4 29 42 0 4 A/+1 0.0526 2;0 22.0 1 40.8 1 60.0 8.000 0.0556 0 6 7.000 1 1.6 4 72 TATTTATTGTGCTAGGAATT TTTTTTATAAATAAATATTT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20159204 20159204 T TTTATTGTGCTAGGAATTATTTTTTATAAATAAATATTTACTGCTGAGTTAGATCATACAGCCATTAACTTGGCTCAGTAAATAAAATGCATTTAGCTAGTTGTCCTTTAATCGATTCTCCCCCCCACCATTTCTGTTTTCTTTGCTTTTCTGTGAGTGGCTCACACAGAAAATTACCATTGTTCCTATTTCAGGCCCGTGTTATTGTGGAGAGTGTTTTAACATCGTCAGTCCTTGGCCCC 89 4 40 46 2 2 T/+241 0.0449 2;2 32.5 1 39.3 1 44.0 8.000 0.0476 0.0449 70 4.000 1 0.5 4 84 ATGTATTTGGCTAACCAATA TTATTGTGCTAGGAATTATT 20:20156209-20234556 Insertion 0 4-2-1 NA24385_chr_20_20156208_20234556 testbed 20 20159207 20159208 AT A 91 2 40 49 1 1 T/-1 0.0220 2;2 18.0 1 42.0 0 60.0 4.000 0.0230 0 1 2.000 1 0 2 87 TATTTGGCTAACCAATATTT TGTGCTAGGAATTATTTTTT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20225335 20225335 C A 73 42 20 11 18 24 C/A 0.5753 2;2 32.5 1 38.3 1 59.0 13.000 0.5571 0 2 2.000 1 1.5 39 70 TTGGGGATTAACATTCGGCT CTTGTTACTTATGCACATTT 20:20156209-20234556 SNV 0 0 @@ -239,7 +239,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20192518 20192518 G GCTCCTCTCTCATGCA NA24385_chr_20_20156208_20234556 testbed 20 20225295 20225295 G T 49 4 24 21 0 4 G/T 0.0816 2;0 9.5 1 26.8 1 60.0 3.000 0.0652 0.0612 1 2.000 2 2.8 3 46 GCTGTCTCTGACATGCCCTG AGACATTTTTTCCATTGTCT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20159831 20159831 A T 97 2 45 50 2 0 A/T 0.0206 2;0 15.0 0 39.5 1 60.0 4.000 0.0211 0 0 1.000 1 2.0 2 95 AACTTCAGCAAAGTCTCAGG TACAAAATCAATGTGCAAAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20159819 20159819 C T 84 2 39 43 2 0 C/T 0.0238 2;0 27.0 0 34.5 1 60.0 4.000 0.0244 0 0 3.000 1 2.0 2 82 AAGCTGAGAAACAACTTCAG AAAGTCTCAGGATACAAAAT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20159929 20159929 C CA 101 5 45 48 3 2 C/+1 0.0495 2;2 22.3 1 41.6 1 62.0 10.000 0.0521 0.0297 6 7.000 1 0.8 5 96 AATCCCATTCACAATTGCCA AAAAAATAAATAATATACCT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20159929 20159929 C CA 101 5 45 48 3 2 C/+1 0.0495 2;2 21.6 1 40.2 1 60.0 10.000 0.0521 0.0297 6 7.000 1 0.8 5 96 AATCCCATTCACAATTGCCA AAAAAATAAATAATATACCT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20159907 20159907 G A 92 92 0 0 39 53 A/A 1.0000 0;2 35.1 1 39.4 1 60.0 29.667 1.0000 0.0217 0 1.000 1 1.5 89 89 CCTAGAGTCAAATCAAGAGT CAATCCCATTCACAATTGCC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20225453 20225453 T A 117 2 66 49 1 1 T/A 0.0171 2;2 29.5 1 42.0 0 60.0 4.000 0.0180 0 0 2.000 2 1.0 2 111 CTTTTATGCTCTGCTTCCCT ATAAAACTGAATGCCTTTAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20159896 20159896 A T 94 2 40 51 1 1 A/T 0.0213 2;2 20.5 1 29.5 1 60.0 4.000 0.0227 0 0 3.000 1 1.5 2 88 CCACAGTCAAGCCTAGAGTC AATCAAGAGTGCAATCCCAT 20:20156209-20234556 SNV 0 0 @@ -254,14 +254,14 @@ NA24385_chr_20_20156208_20234556 testbed 20 20159625 20159625 C A 90 89 0 0 48 4 NA24385_chr_20_20156208_20234556 testbed 20 20192478 20192479 GA G 77 3 43 29 3 0 A/-1 0.0390 2;0 11.0 0 42.0 0 60.0 6.000 0.0417 0 1 3.000 1 0 3 72 AAAAGAGCTGTGCTTCCAGG ACAGGTCTCAGGCAGCACTT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20159687 20159687 G T 93 3 45 45 2 1 G/T 0.0323 2;2 6.3 1 38.7 1 60.0 6.000 0.0330 0.0215 0 1.000 1 0.3 3 91 AAAAAATTTCCCTATTTTCT CAAGACATAAAGGGCATCCA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20192456 20192457 CA C 87 2 55 29 2 0 A/-1 0.0230 2;0 32.0 0 42.0 0 60.0 4.000 0.0244 0 4 5.000 1 1.0 2 82 TGGTAGTTTATGTATTTAAC AAAAGAGCTGTGCTTCCAGG 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20160317 20160317 C CA 97 2 43 50 2 0 C/+1 0.0206 2;0 17.5 1 42.5 1 61.6 4.000 0.0217 0.0103 5 6.000 1 1.0 2 92 AAAACAGCATGGTACTGGTA AAAAACAGACACATAGACCA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20160317 20160317 C CA 97 2 43 50 2 0 C/+1 0.0206 2;0 17.0 1 41.4 1 60.0 4.000 0.0217 0.0103 5 6.000 1 1.0 2 92 AAAACAGCATGGTACTGGTA AAAAACAGACACATAGACCA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20193043 20193043 T A 75 2 39 34 0 2 T/A 0.0267 2;0 73.0 0 42.0 0 60.0 4.000 0.0299 0 0 3.000 1 1.0 2 67 TTTGGCCCCGGGGAAGTGCT AAACTTCCAATTCCAAGCAC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20193051 20193052 CA C 71 2 34 35 2 0 A/-1 0.0282 2;0 22.0 0 42.0 0 60.0 4.000 0.0294 0 1 2.000 1 0.5 2 68 CGGGGAAGTGCTTAAACTTC ATTCCAAGCACGTCTACATG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20193138 20193138 T TCACCAAGAGCCAGGTGTGCACCAGAAGCCAGGTGGGTTTGTCTCTCCCTGAGCCTGTTTCTCTACCCCCACCAAACCATGTTTCTAGGTGTCCTGCTTTTTGTCCATGAGCCCGATAAACACCATGGCTTTTGTACCTGCTTTTCAA 79 3 40 38 2 1 T/+147 0.0380 2;2 15.3 1 40.4 1 60.0 6.000 0.0395 0.0380 70 2.000 1 0 3 76 TTCTGTGACCCACCCCTGCC CACCAAGAGCCAGGTGTGCA 20:20156209-20234556 Insertion 0 3-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20225979 20225979 C A 85 79 2 1 44 35 C/A 0.9294 2;2 36.0 1 38.4 1 59.2 12.167 0.9605 0.0588 0 1.000 1 1.5 73 76 TTAATGGACTTTCAGTTCCA GTGGCTGGGGAGGCCTCACA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20225952 20225952 A AAGACGTTTAATGGACTTTCAGTTCCACGTGGCTGGGGAGGCCTCACAATCATGGTGGAAGGCAAAGAGGAACAAGTCACGTCTTATATGGATGGCAGCAGGCAAAGAGAGAGCTTGTGCAGGGAAACTCCTATTTTTAAAACCATCAGATCTGGTGAGACTTACTCACTATCATGAGAACAGCATAGGAAAGACCTGTTCCCATGATTCGGTTACCTCTCACCAGGTCCCTCCCACAACACGTGGGAATTATGGGAGCTACACGATGAGATTTGAGTGGGGACACAGAGCCAAACTATATCAAT 88 3 56 32 2 1 A/+304 0.0341 2;2 17.3 1 40.8 1 60.0 6.000 0.0349 0.0341 70 3.000 1 1.0 3 86 ACTGGGCAATTTACAAAAGA AGACGTTTAATGGACTTTCA 20:20156209-20234556 Insertion 0 3-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20160422 20160422 A G 102 2 46 54 1 1 A/G 0.0196 2;2 5.0 1 34.5 1 60.0 4.000 0.0196 0.0098 0 2.000 1 1.5 2 102 CCTGATAAAGCAGTGGAAAA GGATTCCCTATTCAATAAAT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20193178 20193178 G GTCTC 69 4 31 32 2 2 G/+4 0.0580 2;2 21.2 1 41.5 1 62.0 8.000 0.0615 0 6 5.000 2 0.5 4 65 ACCAGAAGCCAGGTGGGTTT TCTCTCCCTGAGCCTGTTTC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20193178 20193178 G GTCTC 69 4 31 32 2 2 G/+4 0.0580 2;2 20.5 1 40.1 1 60.0 8.000 0.0615 0 6 5.000 2 0.5 4 65 ACCAGAAGCCAGGTGGGTTT TCTCTCCCTGAGCCTGTTTC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20160392 20160393 CT C 99 2 51 46 0 2 T/-1 0.0202 2;0 16.0 1 31.0 1 60.0 4.000 0.0213 0.0101 1 2.000 1 0.5 2 94 TACACCTACAACTATCTAAT TCAGCAGACCTGATAAAGCA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20160508 20160508 A T 114 2 64 48 2 0 A/T 0.0175 2;0 17.0 0 42.0 0 60.0 4.000 0.0179 0 0 1.000 1 1.0 2 112 ACACCTTACTTACACCATAT CAAAAATTAACTCAAGGATT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20160472 20160472 A T 116 2 57 57 0 2 A/T 0.0172 2;0 33.0 0 42.0 0 60.0 4.000 0.0177 0 0 1.000 1 2.0 2 113 ATAACTGGGTAGCCATGTGC GAAGACTGAAACTGGACACC 20:20156209-20234556 SNV 0 0 @@ -297,9 +297,9 @@ NA24385_chr_20_20156208_20234556 testbed 20 20226479 20226479 T C 85 2 50 33 2 0 NA24385_chr_20_20156208_20234556 testbed 20 20226452 20226778 T 90 2 51 37 0 2 T/ 0.0222 2;0 63.0 1 41.0 1 60.0 4.000 0.0227 0.0222 1 2.000 1 0.5 2 88 TAATAGAAGTAGTCTAAAAT TAATCTTACCCTGATTTCAA 20:20156209-20234556 INV 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20160903 20160903 G GTGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAAAAAGAAAAAAAAAAAACTGGGCACAGAACGTGAATAGACACTTTTCAAAAGAAGACATACATGCAGCCAACAATCATAAGAAAAAAAGCTCTACCTCACTGATCATTAGAGAAATGCAGATCAAAACCACCAAGAGATACCATCTCACACCAGTCAGAATGGCTATTACAAAAAAGTCAATAACAGATGGAGAGGTTGCAGAAAAGCAGGAATGCTTATACTCTATTTGTGGGAGTGTAAATTAGTTCAACCATTGTGGAAGACAGTGTGACGACTCCTCAA 94 3 52 40 1 2 G/+353 0.0319 2;2 48.0 1 41.6 1 45.7 6.000 0.0345 0.0319 70 2.000 1 0.3 3 87 GAATGGCGTGAACCCGCAAG TGGAGCTTGCAGTGAGCCGA 20:20156209-20234556 Insertion 0 3-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20160978 20160979 GA G 87 3 36 46 1 2 A/-1 0.0345 2;2 49.3 1 40.3 1 60.0 6.000 0.0375 0 11 12.000 1 0.3 3 80 GTGAGACTCTGTCTCAAAAA AAAAAAAAAAACTGGGCACA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20160978 20160978 G GAA 86 25 13 20 15 10 G/+2 0.2907 2;2 37.8 1 41.8 1 56.5 50.000 0.3378 0.0233 12 14.000 1 2.3 25 74 GTGAGACTCTGTCTCAAAAA AAAAAAAAAAAACTGGGCAC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20160978 20160978 G GAA 86 25 13 20 15 10 G/+2 0.2907 2;2 35.3 1 39.1 1 52.8 50.000 0.3378 0.0233 12 14.000 1 2.3 25 74 GTGAGACTCTGTCTCAAAAA AAAAAAAAAAAACTGGGCAC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20160978 20160978 G A 86 8 13 20 0 8 G/A 0.0930 2;0 7.4 1 33.8 1 60.0 7.000 0.0946 0 0 12.000 1 1.2 7 74 GTGAGACTCTGTCTCAAAAA AAAAAAAAAAAACTGGGCAC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20160978 20160978 G GA 86 5 13 20 3 2 G/+1 0.0581 2;2 59.0 1 45.1 0 64.4 10.000 0.0676 0 12 13.000 1 0.6 5 74 GTGAGACTCTGTCTCAAAAA AAAAAAAAAAAACTGGGCAC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20160978 20160978 G GA 86 5 13 20 3 2 G/+1 0.0581 2;2 55.0 1 42.0 0 60.0 10.000 0.0676 0 12 13.000 1 0.6 5 74 GTGAGACTCTGTCTCAAAAA AAAAAAAAAAAACTGGGCAC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20160978 20160980 GAA AAG 86 2 13 20 2 0 GAA/AAG 0.0233 2;0 5.0 0 42.0 0 60.0 4.000 0.0270 0 0 12.000 1 2.0 2 74 GTGAGACTCTGTCTCAAAAA AAAAAAAAAACTGGGCACAG 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20160977 20160978 AG GAA 87 2 39 45 0 2 AAG/+4 0.0230 2;0 30.0 0 37.8 1 60.0 4.000 0.0253 0 0 0 0 0.5 2 79 AGTGAGACTCTGTCTCAAAA AAAAAAAAAAAACTGGGCAC 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20160989 20160989 A AACTGGGCACAGAACGTGAATAGACACTTTTCAAAAGAAGACATACATGCAGCCAACAATCATAAGAAAAAAAGCTCTACCTCACTGATCATTAGAGAAATGCAGATCAAAACCACCAAGAGATACCATCTCACACCAGTCAGAATGGCTATTACAAAAAAGTCAATAACAGATGGAGAGCCATTCTG 91 8 35 46 5 3 A/+187 0.0879 2;2 45.5 1 40.8 1 56.8 16.000 0.0976 0.0879 70 12.000 1 0.4 8 82 TCTCAAAAAGAAAAAAAAAA ACTGGGCACAGAACGTGAAT 20:20156209-20234556 Insertion 0 8-0-0 @@ -312,12 +312,12 @@ NA24385_chr_20_20156208_20234556 testbed 20 20160619 20160962 ATGATGAAGATGCCAAAA NA24385_chr_20_20156208_20234556 testbed 20 20193347 20193347 T G 53 2 28 23 2 0 T/G 0.0377 2;0 34.0 0 39.5 1 60.0 4.000 0.0385 0 0 1.000 1 6.5 2 52 CTGAGAAGTCCCCTTGTTGG CACTCCCTGCTCCTGCCTGG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20193458 20193459 AT A 122 2 82 38 1 1 T/-1 0.0164 2;2 41.5 1 42.0 0 60.0 4.000 0.0172 0 1 2.000 1 0 2 116 AGAGTTAATTGATGTCATTC TCAGTCAGTATTGTTGTGTA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20193464 20193464 T C 127 2 86 39 0 2 T/C 0.0157 2;0 44.0 0 32.0 0 60.0 4.000 0.0163 0 0 1.000 1 3.0 2 123 AATTGATGTCATTCATTCAG CAGTATTGTTGTGTACTGAT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20193430 20193430 G GGTGGTGGAGAGTTAATTGATGTCATTCCGAAATTCTTTCAAAATAATTATGAAACTAAGTCAAAAGCACCAAAGCTGCACGGGCTGAGT 105 5 57 26 4 1 G/+89 0.0476 2;2 47.4 1 42.6 1 70.4 10.000 0.0595 0.0476 27 2.000 2 0.2 5 84 CTTCGCTGGTTAGGAGGCTT GTGGTGGAGAGTTAATTGAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20193430 20193430 G GGTGGTGGAGAGTTAATTGATGTCATTCCGAAATTCTTTCAAAATAATTATGAAACTAAGTCAAAAGCACCAAAGCTGCACGGGCTGAGT 105 5 57 26 4 1 G/+89 0.0476 2;2 40.4 1 36.3 1 60.0 10.000 0.0595 0.0476 27 2.000 2 0.2 5 84 CTTCGCTGGTTAGGAGGCTT GTGGTGGAGAGTTAATTGAT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20226198 20226199 GA G 76 2 32 41 1 1 A/-1 0.0263 2;2 25.0 1 42.0 0 60.0 4.000 0.0299 0 1 3.000 1 0 2 67 GTCCCTCCCACAACACGTGG ATTATGGGAGCTACACGATG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20160652 20160652 G AGA 108 2 41 65 0 2 AG/+4 0.0185 2;0 9.5 1 37.0 1 55.5 4.000 0.0192 0.0093 0 0 0 0 2 104 CAAAAGCAATTACAACAAAA AAAAAATTGACACATGGTAT 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20160653 20160653 A T 107 2 41 64 0 2 A/T 0.0187 2;0 48.0 0 42.0 0 60.0 4.000 0.0192 0 0 6.000 1 1.0 2 104 AAAAGCAATTACAACAAAAG AAAAATTGACACATGGTATC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20160652 20160652 G GA 107 3 39 61 1 2 G/+1 0.0280 2;2 42.0 1 43.4 0 62.0 6.000 0.0297 0 6 7.000 1 0.3 3 101 CAAAAGCAATTACAACAAAA AAAAAATTGACACATGGTAT 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20226289 20226289 T TA 79 3 33 40 1 2 T/+1 0.0380 2;2 45.4 1 40.5 1 62.8 6.000 0.0417 0.0127 8 9.000 1 0.3 3 72 TTACTTGCTTCAGTTCCACC AAAAAAAATAGGGATAATAG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20160652 20160652 G GA 107 3 39 61 1 2 G/+1 0.0280 2;2 40.7 1 42.0 0 60.0 6.000 0.0297 0 6 7.000 1 0.3 3 101 CAAAAGCAATTACAACAAAA AAAAAATTGACACATGGTAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20226289 20226289 T TA 79 3 33 40 1 2 T/+1 0.0380 2;2 43.3 1 38.7 1 60.0 6.000 0.0417 0.0127 8 9.000 1 0.3 3 72 TTACTTGCTTCAGTTCCACC AAAAAAAATAGGGATAATAG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20160745 20160745 A T 79 2 33 43 0 2 A/T 0.0253 2;0 6.0 0 42.0 0 60.0 4.000 0.0267 0 0 4.000 1 3.5 2 75 CAACCTATAGAATGGAAGAA AGTTTTGCAAACTATGCATC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20160750 20160953 T 86 2 34 46 0 2 T/ 0.0233 2;0 42.0 1 32.9 1 60.0 4.000 0.0263 0.0233 0 2.000 1 0 2 76 TATAGAATGGAAGAAAAGTT CAGAGTGAGACTCTGTCTCA 20:20156209-20234556 INV 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20194070 20194071 TG T 73 2 26 45 0 2 G/-1 0.0274 2;0 62.0 0 42.0 0 60.0 4.000 0.0286 0 2 3.000 1 0.5 2 70 GGAGGGGAAAAGCAAGCCAG GGCTCAGAACATGAATTTAG 20:20156209-20234556 Deletion 0 0 @@ -327,11 +327,11 @@ NA24385_chr_20_20156208_20234556 testbed 20 20194148 20194148 G T 71 6 30 35 0 6 NA24385_chr_20_20156208_20234556 testbed 20 20161352 20161352 A C 119 2 48 69 1 1 A/C 0.0168 2;2 16.5 1 27.0 0 60.0 4.000 0.0175 0 0 1.000 1 4.0 2 114 CTAAGGACACATACACACAC TGTTCATTGCAGCACTATTC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161457 20161457 T A 121 2 59 59 1 1 T/A 0.0165 2;2 47.0 1 42.0 0 60.0 4.000 0.0179 0 0 1.000 1 1.0 2 112 GGTACAGATACACCATGGAA ACTATGCAGCCATAAAAAAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20194236 20194236 A T 72 2 56 14 2 0 A/T 0.0278 2;0 70.0 0 37.0 1 60.0 4.000 0.0312 0 0 1.000 1 2.0 2 64 CATTTTGAAGGCTCTACTCA CAGATGTGTAGAGTATAGAA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20161470 20161470 T TA 130 3 64 58 3 0 T/+1 0.0231 2;0 68.2 0 43.4 0 62.0 6.000 0.0252 0 6 7.000 1 1.0 3 119 CATGGAATACTATGCAGCCA AAAAAAGAATGAGATCTTGT 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20194189 20194189 G GA 78 12 37 18 8 4 G/+1 0.1538 2;2 40.9 1 39.6 1 64.8 24.000 0.1791 0.0641 13 14.000 1 3.5 12 67 AGGACACTGTATCTGTTTAA AAAAAAAAAAAAATGACAAA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20161470 20161470 T TA 130 3 64 58 3 0 T/+1 0.0231 2;0 66.0 0 42.0 0 60.0 6.000 0.0252 0 6 7.000 1 1.0 3 119 CATGGAATACTATGCAGCCA AAAAAAGAATGAGATCTTGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20194189 20194189 G GA 78 12 37 18 8 4 G/+1 0.1538 2;2 37.8 1 36.6 1 60.0 24.000 0.1791 0.0641 13 14.000 1 3.5 12 67 AGGACACTGTATCTGTTTAA AAAAAAAAAAAAATGACAAA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20194189 20194190 GA G 78 8 47 23 6 2 A/-1 0.1026 2;2 35.9 1 42.0 0 60.0 16.000 0.1053 0 12 13.000 1 0.6 8 76 AGGACACTGTATCTGTTTAA AAAAAAAAAAAATGACAAAG 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20161054 20161054 G GA 84 2 35 44 0 2 G/+1 0.0238 2;0 66.6 0 43.7 0 62.4 4.000 0.0267 0 7 8.000 1 0 2 75 CATGCAGCCAACAATCATAA AAAAAAAGCTCTACCTCACT 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20161143 20161143 C CAA 95 2 51 36 1 1 C/+2 0.0211 2;2 28.4 1 40.8 1 62.0 4.000 0.0235 0 6 8.000 1 0 2 85 ACCAGTCAGAATGGCTATTA AAAAAAGTCAATAACAGATG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20161054 20161054 G GA 84 2 35 44 0 2 G/+1 0.0238 2;0 64.0 0 42.0 0 60.0 4.000 0.0267 0 7 8.000 1 0 2 75 CATGCAGCCAACAATCATAA AAAAAAAGCTCTACCTCACT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20161143 20161143 C CAA 95 2 51 36 1 1 C/+2 0.0211 2;2 27.5 1 39.5 1 60.0 4.000 0.0235 0 6 8.000 1 0 2 85 ACCAGTCAGAATGGCTATTA AAAAAAGTCAATAACAGATG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161175 20161262 GAAAAGCAGGAATGCTTATACTCTATTTGTGGGAGTGTAAATTAGTTCAACCATTGTGGAAGACAGTGTGACGACTCCTCAAAGACGT G 87 5 54 33 5 0 A/-87 0.0575 2;0 141.0 1 32.0 1 60.0 3.000 0.0345 0.0345 8 1.000 1 1.0 3 87 TAACAGATGGAGAGGTTGCA AAAAGCAGAAATAACATTCC 20:20156209-20234556 Deletion 0 3-8-2 NA24385_chr_20_20156208_20234556 testbed 20 20161157 20161157 A ACAGATGGAGAGGTTGCAGAAAAGCAGGAATGCTTATACTCTATTTGTGGGAGTGTAAATTAGTTCAACCATTGTGGAAGACAGTGTGACGACTCCTCAAAGACGTAAAAGCAGAAATAACATTCCACCCAGCAACCCCACTACTGAGTATATATCCAAAGGAATATAAATCATTCTAAGGACACATACACACACATGTTCATTGCAGCACTATTCACAATAGCAAAGACATGGAATCAATCTAAATGCCCGTCAGTGTTAAAGTGGATAAAGAAAATGTGGTACAGATACACCATGGAATACTATT 132 3 60 33 2 1 A/+306 0.0227 2;2 21.0 1 37.8 1 60.0 6.000 0.0326 0.0227 70 2.000 1 2.7 3 92 CTATTACAAAAAAGTCAATA CAGATGGAGAGGTTGCAGAA 20:20156209-20234556 Insertion 0 3-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20161263 20161263 A AAAAGCAGAAATAACATTCCACCCAGCAACCCCACTACTGAGTATATATCCAAAGGAATATAAATCATTCTAAGGACACATACACACACATGTTCATTGCAGCACTATTCACAATAGCAAAGACATGGAATCAATCTAAATGCCCGTCAGTGTTAAAGTGGATAAAGAAAATGTGGTACAGATACACCATGGAATACTATGCAGCCATAAAAAAGAATGAGATCTTGTCCTTTGCAGGAACATGGATGGAGCTGGAGGCCATTATCCTTAGCATACTAATGCAGGAACAGAAAACCAAATACCACACATTCTCACTTATAGGTGGGAGCTAAATTATGAGAACACATGGACACATAGAGGGGAAAAACAGACACTGGGGCAAATCAGAGGGTGGAGGGTGGGAGGAGGGAGAGGATCAGGAAACATAATTAATGGATACTAGGCTCAATACCTGGGTGATAAATAATCTCTACAACAAACCCCAATGACACAAGTTTGTCTATATAACCAACCTTCACGCGTACCCCTGAATTTAAAGTAAAAGTTATATATATACACATATATATGCATATATATGTATATATATGTATATATACATATGTGTATATATAT 104 4 46 50 2 2 A/+611 0.0385 2;2 28.0 1 40.0 1 60.0 8.000 0.0426 0.0385 70 4.000 2 0 4 94 TGACGACTCCTCAAAGACGT AAAGCAGAAATAACATTCCA 20:20156209-20234556 Insertion 0 4-0-0 @@ -344,59 +344,59 @@ NA24385_chr_20_20156208_20234556 testbed 20 20161818 20161818 C T 97 5 42 49 3 2 NA24385_chr_20_20156208_20234556 testbed 20 20161816 20161816 T C 95 4 40 49 3 1 T/C 0.0421 2;2 5.5 1 35.2 1 60.0 3.000 0.0333 0.0211 1 5.000 2 2.2 3 90 TAAAGTAAAAGTTATATATA ACACATATATATGCATATAT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161821 20161821 A ATG 100 4 44 49 1 3 A/+2 0.0400 2;2 21.5 1 42.0 0 60.0 8.000 0.0426 0 1 2.000 2 2.8 4 94 TAAAAGTTATATATATACAC TATATATGCATATATATGTA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161821 20161821 A ATATG 100 3 44 49 0 3 A/+4 0.0300 2;0 63.0 0 39.5 1 46.7 6.000 0.0319 0 3 2.000 2 6.7 3 94 TAAAAGTTATATATATACAC TATATATGCATATATATGTA 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20161820 20161820 C CAT 102 60 11 21 29 31 C/+2 0.5882 2;2 42.3 1 40.2 1 58.2 59.000 0.6082 0.0490 8 5.000 2 1.2 59 97 GTAAAAGTTATATATATACA ATATATATGCATATATATGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20161820 20161820 C CAT 102 60 11 21 29 31 C/+2 0.5882 2;2 40.5 1 38.5 1 55.7 59.000 0.6082 0.0490 8 5.000 2 1.2 59 97 GTAAAAGTTATATATATACA ATATATATGCATATATATGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161820 20161820 C T 102 6 11 21 3 3 C/T 0.0588 2;2 9.2 1 35.2 1 52.2 5.000 0.0515 0 1 2.000 2 2.3 5 97 GTAAAAGTTATATATATACA ATATATATGCATATATATGT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20161820 20161820 C CATATAT 102 3 11 21 3 0 C/+6 0.0294 2;0 58.6 0 44.0 0 62.8 6.000 0.0309 0 8 7.000 2 0 3 97 GTAAAAGTTATATATATACA ATATATATGCATATATATGT 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20161820 20161820 C CATAT 102 2 11 21 2 0 C/+4 0.0196 2;0 33.5 0 41.3 0 62.8 4.000 0.0206 0 8 6.000 2 6.8 2 97 GTAAAAGTTATATATATACA ATATATATGCATATATATGT 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20227446 20227446 A AT 74 4 35 32 2 2 A/+1 0.0541 2;2 45.7 1 41.8 1 61.6 8.000 0.0615 0 5 6.000 1 0 4 65 CCTCTAGAAACAAGCTCCTA TTTTTCCAATAAGGAGGAAG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20161820 20161820 C CATATAT 102 3 11 21 3 0 C/+6 0.0294 2;0 56.0 0 42.0 0 60.0 6.000 0.0309 0 8 7.000 2 0 3 97 GTAAAAGTTATATATATACA ATATATATGCATATATATGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20161820 20161820 C CATAT 102 2 11 21 2 0 C/+4 0.0196 2;0 32.0 0 39.5 0 60.0 4.000 0.0206 0 8 6.000 2 6.8 2 97 GTAAAAGTTATATATATACA ATATATATGCATATATATGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20227446 20227446 A AT 74 4 35 32 2 2 A/+1 0.0541 2;2 44.5 1 40.8 1 60.0 8.000 0.0615 0 5 6.000 1 0 4 65 CCTCTAGAAACAAGCTCCTA TTTTTCCAATAAGGAGGAAG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161909 20161909 A T 92 3 46 43 0 3 A/T 0.0326 2;0 58.0 0 38.7 1 60.0 6.000 0.0385 0 0 1.000 1 2.7 3 78 TATATATAACTTTTATATGT TGTGTATGTATACACACACA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20194662 20194666 TATTC T 72 2 20 49 0 2 A/-4 0.0278 2;0 42.0 0 39.5 1 60.0 4.000 0.0312 0 3 2.000 1 0.5 2 64 GAGCAAAGGCTTCTTGGAGT ATTGATTCTTTACCTCTGTG 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20161886 20161886 G GTA 96 4 40 40 0 4 G/+2 0.0417 2;0 51.4 1 41.9 1 63.6 8.000 0.0533 0 10 6.000 2 1.6 4 75 TATATATATAACTTTTATGT TATATATATAACTTTTATAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20161886 20161886 G GTA 96 4 40 40 0 4 G/+2 0.0417 2;0 48.5 1 39.5 1 60.0 8.000 0.0533 0 10 6.000 2 1.6 4 75 TATATATATAACTTTTATGT TATATATATAACTTTTATAT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161858 20161860 CAT C 100 35 30 34 16 19 A/-2 0.3500 2;2 26.3 1 39.7 1 56.5 34.000 0.3736 0.0100 2 2.000 2 0.8 34 91 TGTATATATATGTATATATA ATGTGTATATATATAACTTT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161858 20161860 CAT TAC 101 3 43 43 1 2 CAT/TAC 0.0297 2;2 15.3 1 35.9 1 56.7 6.000 0.0353 0.0198 1 1.000 1 0.7 3 85 TGTATATATATGTATATATA ATGTGTATATATATAACTTT 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161856 20161858 TAC T 99 8 45 46 2 6 A/-2 0.0808 2;2 33.2 1 36.4 1 49.1 3.000 0.0667 0 1 5.000 2 4.2 6 90 TATGTATATATATGTATATA ATATGTGTATATATATAACT 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20161920 20161920 T TACACACAC 100 38 10 9 8 30 T/+8 0.3800 2;2 37.6 1 39.0 1 60.4 76.000 0.4368 0.1000 25 16.000 2 0.5 38 87 TTTATATGTATGTGTATGTA ACACACACACACACACACAC 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20161920 20161920 T TACACAC 100 25 10 9 13 11 T/+6 0.2500 2;2 48.0 1 42.1 1 57.1 50.000 0.2874 0 25 15.000 2 1.4 25 87 TTTATATGTATGTGTATGTA ACACACACACACACACACAC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20161920 20161920 T TACACACAC 100 38 10 9 8 30 T/+8 0.3800 2;2 33.2 1 34.4 1 53.4 76.000 0.4368 0.1000 25 16.000 2 0.5 38 87 TTTATATGTATGTGTATGTA ACACACACACACACACACAC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20161920 20161920 T TACACAC 100 25 10 9 13 11 T/+6 0.2500 2;2 42.3 1 37.1 1 50.3 50.000 0.2874 0 25 15.000 2 1.4 25 87 TTTATATGTATGTGTATGTA ACACACACACACACACACAC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20194794 20194794 T A 85 2 47 36 1 1 T/A 0.0235 2;2 9.5 1 34.5 1 60.0 4.000 0.0270 0 0 2.000 2 1.0 2 74 CAGGGCAGTGTGGGGCCCTC CAGGATACTGGACAGAGAAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161588 20161589 GA G 118 2 49 67 2 0 A/-1 0.0169 2;0 23.0 0 42.0 0 60.0 4.000 0.0189 0 0 4.000 1 0.5 2 106 ACATTCTCACTTATAGGTGG GCTAAATTATGAGAACACAT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161551 20161619 AGAAAACCAAATACCACACATTCTCACTTATAGGTGGGAGCTAAATTATGAGAACACATGGACACATAG CTATGTGTCCATGTGTTCTCATAATTTAGCTCCCACCTATAAGTGAGAATGTGTGGTATTTGGTTTTCT 123 3 52 68 0 3 A/-69iCTATGTGTCCATGTGTTCTCATAATTTAGCTCCCACCTATAAGTGAGAATGTGTGGTATTTGGTTTTCT 0.0244 2;0 20.3 1 41.5 1 53.7 6.000 0.0252 0.0244 2 2.000 2 0 3 119 TAGCATACTAATGCAGGAAC AGGGGAAAAACAGACACTGG 20:20156209-20234556 Complex 0 3-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20227190 20227191 CT C 66 5 46 15 5 0 T/-1 0.0758 2;0 49.0 0 42.0 0 60.0 10.000 0.0769 0 0 1.000 1 0 5 65 GTTGGTGACTACATTTGCAT GACAGGGCGCCTGGCTGGGA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20194416 20194416 G GA 91 2 43 40 1 1 G/+1 0.0220 2;2 51.3 1 43.1 0 61.6 4.000 0.0247 0 5 6.000 1 0.5 2 81 ATAGGTGATATAATTAACAA AAAAACTGATCCACACTGAA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20194416 20194416 G GA 91 2 43 40 1 1 G/+1 0.0220 2;2 50.0 1 42.0 0 60.0 4.000 0.0247 0 5 6.000 1 0.5 2 81 ATAGGTGATATAATTAACAA AAAAACTGATCCACACTGAA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20194413 20194413 C A 91 3 43 45 3 0 C/A 0.0330 2;0 6.0 0 42.0 0 60.0 6.000 0.0353 0 1 2.000 1 2.0 3 85 AGAATAGGTGATATAATTAA AAGAAAAACTGATCCACACT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20161624 20161624 G GA 108 2 51 52 1 1 G/+1 0.0185 2;2 15.4 1 31.7 1 61.6 4.000 0.0198 0.0093 5 6.000 1 0.5 2 101 ACACATGGACACATAGAGGG AAAAACAGACACTGGGGCAA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20161624 20161624 G GA 108 2 51 52 1 1 G/+1 0.0185 2;2 15.0 1 30.9 1 60.0 4.000 0.0198 0.0093 5 6.000 1 0.5 2 101 ACACATGGACACATAGAGGG AAAAACAGACACTGGGGCAA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20194490 20194490 T A 88 4 44 40 4 0 T/A 0.0455 2;0 47.0 1 37.0 1 60.0 3.000 0.0375 0 1 1.000 1 2.8 3 80 TTTGTTTCTCTCCCCTTCGT GTTAACTGTTTTTTCACACC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161673 20161674 GA G 111 3 50 57 0 3 A/-1 0.0270 2;0 19.0 0 42.0 0 60.0 6.000 0.0306 0 0 3.000 1 0 3 98 GTGGAGGGTGGGAGGAGGGA GGATCAGGAAACATAATTAA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20194543 20194545 ATC A 70 5 32 32 1 4 T/-2 0.0714 2;2 25.6 1 42.0 0 60.0 10.000 0.0909 0 18 10.000 2 0.8 5 55 TGTTTTCGCCATGGTGTGCA TCTCTCTCTCTCTCTCTCCA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161764 20161764 A G 104 58 18 27 20 38 A/G 0.5577 2;2 34.0 1 38.2 1 59.1 13.500 0.5455 0 1 2.000 2 1.7 54 99 CCAATGACACAAGTTTGTCT TATAACCAACCTTCACGCGT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20161771 20161771 C CAACCTTCACGCGTACCCCTGAATTTAAAGTAAAAGTTATATATATACACATATATATGCATATATATGTATATATATGTATATATACATATGTGTATATATATAACTTTTATGTGTATATATATAACTTTTATATGTATGTGTATGTATACACACACACACACACACACACACATAACCTTGTGTCTAAAACAATTCATCCACTCAATTTGGGATTGAAAATCCCAATCTTTTTCCTTCCACTTTCATATATGATATTCTACTTTATTGTGTGTGTGACCTGAG 105 2 40 64 0 2 C/+284 0.0190 2;0 10.5 1 35.5 1 60.0 4.000 0.0200 0.0190 70 2.000 1 3.0 2 100 CACAAGTTTGTCTATATAAC AACCTTCACGCGTACCCCTG 20:20156209-20234556 Insertion 0 2-3-1 -NA24385_chr_20_20156208_20234556 testbed 20 20162360 20162360 G GA 91 2 48 39 1 1 G/+1 0.0220 2;2 22.6 1 39.3 1 61.6 4.000 0.0233 0.0110 5 6.000 1 0.5 2 86 AAGCCATGTGGATGGGTAAT AAAAACATAGCTAATCTCCC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20162360 20162360 G GA 91 2 48 39 1 1 G/+1 0.0220 2;2 22.0 1 38.2 1 60.0 4.000 0.0233 0.0110 5 6.000 1 0.5 2 86 AAGCCATGTGGATGGGTAAT AAAAACATAGCTAATCTCCC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20162337 20162337 A AAGAAGCCATGTGGATGGGTAATGAAAAACATAGCTAATCTCCCTCACTGATTCAAGGTAGCTTTAGAACTATGCTTGCACCCTTGGGAAAAGAACACTAAACCCTTCTGGTTACTGAGTACACATTCACTTCTGGGAAGATCAGGCAAGGTGATATGTGGAACAGGTAGAGGGAGGTGGGAATGTTCTCCTTCCTGGCTATAGGCCATGGGACTGAAAGATGGGAGCCACCATAATGGCTAAAATGAAAGAAGCAACTTCCTATTGAAAACTTGC 94 4 52 41 1 3 A/+275 0.0426 2;2 36.2 1 41.4 1 55.0 8.000 0.0444 0.0426 70 2.000 1 0.2 4 90 CTTGCTTTTTCTGTGGATGG AGAAGCCATGTGGATGGGTA 20:20156209-20234556 Insertion 0 4-3-1 NA24385_chr_20_20156208_20234556 testbed 20 20195155 20195155 A AGTTTCTGTGACCCCCCACCCCAAGCCCTTCTGTTGAGTCCTAAATTCAGTTCTCCAAAGATGAACACTGTCCACAGGGATTCTCCCCAACAATGGAGGAAGCCATCCCTGAAGATGCATGGTCTTGACAAAACCTTGAATTTCAACCCCAAGTCACACAAAGAAGACTCACAGCCCCCTGGACCGCTGTAAACAGCAGTCACTATTAGAGATGAAGGCCTAAAATCTCAACACTTCTTTCCACTGATGGAAAATTTGGGAGCAGGGCTCCCCTCCTGGCCTCCTCAGTATTCTGCAGACATCCTGCCCTCTGTCCCAACAGGGATCTTGCCTGCAGAGCGCTGCACCTGCTTCCTGTTTAGGGCGCAGGGCAGGCAGAAGGAGAGTGGAGAGAGAGAAGCATCCACAGGGAGCAGACTCATAAAACTACAGGGGCTTTCTAAGCAATAGCTCTCACCAAGGAATTAAACCCCACTCAGACACTGACAGAGAAATCTCTTATTCAGTCACTTCTTAACTTTTTTTTCTTCAAACAGTGCCACTCACTTACTCTAGGGCTCACTCTGTTTCCTCTTGCTTGGTGATCATTTTGCATGTTGAGATTGTGTT 84 2 34 43 1 1 A/+608 0.0238 2;2 40.5 1 39.4 1 60.0 4.000 0.0263 0.0238 70 2.000 1 0 2 76 GGGCATCGCAGTGATCTCTT GTTTCTGTGACCCCCCACCC 20:20156209-20234556 Insertion 0 2-0-0 -NA24385_chr_20_20156208_20234556 testbed 20 20195165 20195165 A AC 82 5 33 41 1 4 A/+1 0.0610 2;2 25.0 1 42.4 1 62.0 10.000 0.0758 0 6 7.000 1 0.4 5 66 GTGATCTCTTAGTTTCTGTG CCCCCCACCCCAAGCCCTTC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20195165 20195165 A AC 82 5 33 41 1 4 A/+1 0.0610 2;2 24.2 1 41.0 1 60.0 10.000 0.0758 0 6 7.000 1 0.4 5 66 GTGATCTCTTAGTTTCTGTG CCCCCCACCCCAAGCCCTTC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20162491 20162491 T TATGTGGAACAGGTAGAGGGAGGTGGGAATGTTCTCCTTCCTGGCTATAGGCCATGGGACTGAAAGATGGGAGCCACCATAATGGCTAAAATGAAAGAAGCAACTTCCTATTGAAAACTTGCAGAGAGATGAAAGTAGGGCCACGTTTAGGTGCATCCAATGAGCCACCATCTTCTGAAGTCCTGCCAGGCCTAAGTCGGTACATAATCATTGAAGCGGACTTTGTTTTATTGGATATTTATTTAGCAGATTTAAAGTTC 79 2 35 44 2 0 T/+259 0.0253 2;0 24.0 1 38.0 1 30.0 4.000 0.0256 0.0253 70 2.000 2 0 2 78 GGGAAGATCAGGCAAGGTGA ATGTGGAACAGGTAGAGGGA 20:20156209-20234556 Insertion 0 2-3-1 NA24385_chr_20_20156208_20234556 testbed 20 20228006 20228006 C CTGCAGGTGTGACGCTGCGTGGGCAGACTGAGTGGGTGGAAGCCACTGGCGTCCCTGCTGCTGTCCCTGCCTCCACAGTCTCAGCACAGCAGCCAGAGCAAGGCTGCGGAAAGCTGGCTCAGATCACATCGCCTCCTCACCGCCCAGAACTGCACTATCCAATATGGTGGCCACTAGCCACGTGTATTTACATTTAAATTATTAAATGAGATGAAAAAGTCGGCTCCTCACATTAGCCACATGTAGCCAGTGGCTACCACATTGGATAGAACAGATAAGAACATTTTCATCATCGTAGAACGTGCTGTGATGCTCCAGCCTAAACTCTGTCTCCATCTACTTAATTCTCCAGCCTCACCTTTTATTATTTTTGCCCTTTTTCTCCCCATTAA 83 2 38 28 2 0 C/+391 0.0241 2;0 30.0 1 42.0 1 60.0 4.000 0.0303 0.0241 70 2.000 1 0 2 66 ACAGCTACCGAGGGGGCTTT TGCAGGTGTGACGCTGCGTG 20:20156209-20234556 Insertion 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20162456 20162458 TAC T 81 2 34 44 2 0 A/-2 0.0247 2;0 34.0 0 42.0 0 60.0 4.000 0.0263 0 3 2.000 2 0 2 76 AAACCCTTCTGGTTACTGAG ACATTCACTTCTGGGAAGAT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20228060 20228062 CTG C 74 2 44 28 0 2 T/-2 0.0270 2;0 23.0 0 42.0 0 60.0 4.000 0.0274 0 0 4.000 1 3.5 2 73 GGTGGAAGCCACTGGCGTCC CTGCTGTCCCTGCCTCCACA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20195289 20195289 C CT 60 2 32 26 2 0 C/+1 0.0333 2;0 62.0 0 42.0 0 60.0 4.000 0.0339 0 2 3.000 1 0.5 2 59 ATGCATGGTCTTGACAAAAC TTGAATTTCAACCCCAAGTC 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20194823 20194823 G GA 77 3 37 37 2 1 G/+1 0.0390 2;2 52.0 1 39.7 1 61.6 6.000 0.0429 0 5 6.000 1 0.7 3 70 TGGACAGAGAAGCTGTTTGA AAAAATTCCCATACTCGGTG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20194823 20194823 G GA 77 3 37 37 2 1 G/+1 0.0390 2;2 50.7 1 38.7 1 60.0 6.000 0.0429 0 5 6.000 1 0.7 3 70 TGGACAGAGAAGCTGTTTGA AAAAATTCCCATACTCGGTG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20162150 20162151 CT C 91 2 43 46 0 2 T/-1 0.0220 2;0 53.0 0 39.5 1 60.0 4.000 0.0250 0 0 1.000 1 0 2 80 GTGACCCAGACTGCAAGACT GAGGACTCAAGAAGGGGCCA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20162136 20162136 C CAGACTGCAAGACTCTGAGGACTCAAGAAGGGGCCACTTTGGGTGGGGCTTCATCACTTCTTCACCGAGAGGTGTCATTTCCTGAGGACTAATAGATTCGGGCATTCAAGTACATCAGAGAGAGAAAGCATAAGAGAGAGGTGACCTGGAGAGGTAAAGCCTTGGGAAGCCCTCCGGAGACCTTGCTTTTTCTGTGGATGGAAGAAGCCATGTGGATGGGTAATGAAAAACATAGCTAATCTCCCTCACTGATTCAAGGTAGCTTTAGAACTATGCTTGCACCCTTGGGAAAAGAACACTAAACCCTTCTGGTT 92 2 42 38 1 1 C/+313 0.0217 2;2 49.5 1 40.2 1 60.0 4.000 0.0270 0.0217 70 3.000 1 0 2 74 CTCTTGTGAAGCAGGTGACC AGACTGCAAGACTCTGAGGA 20:20156209-20234556 Insertion 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20162231 20162232 AT A 88 2 40 46 1 1 T/-1 0.0227 2;2 16.5 1 42.0 0 60.0 4.000 0.0267 0 1 2.000 1 0 2 75 CATTTCCTGAGGACTAATAG TCGGGCATTCAAGTACATCA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20227755 20227755 C CT 59 4 25 25 3 1 C/+1 0.0678 2;2 14.0 1 40.9 1 62.4 8.000 0.0755 0.0508 7 8.000 1 0 4 53 TTTCATTTCTCTGAGCTTTG TTTTTTTGATCACGAGCAGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20227755 20227755 C CT 59 4 25 25 3 1 C/+1 0.0678 2;2 13.5 1 39.4 1 60.0 8.000 0.0755 0.0508 7 8.000 1 0 4 53 TTTCATTTCTCTGAGCTTTG TTTTTTTGATCACGAGCAGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20227723 20227724 CT C 63 2 34 27 1 1 T/-1 0.0317 2;2 29.0 1 37.6 1 60.0 4.000 0.0351 0.0159 0 2.000 1 0 2 57 CTGCCCCTGCCACGAAGGGC GGGCAAGGAATTTCATTTCT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20162284 20162284 G C 82 2 43 37 0 2 G/C 0.0244 2;0 67.0 0 37.0 0 60.0 4.000 0.0253 0 0 2.000 2 2.0 2 79 CATAAGAGAGAGGTGACCTG AGAGGTAAAGCCTTGGGAAG 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20162267 20162267 A AAG 90 2 41 43 1 1 A/+2 0.0222 2;2 34.5 1 34.8 1 62.8 4.000 0.0244 0 8 5.000 2 3.7 2 82 ACATCAGAGAGAGAAAGCAT AGAGAGAGGTGACCTGGAGA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20162267 20162267 A AAG 90 2 41 43 1 1 A/+2 0.0222 2;2 33.0 1 33.2 1 60.0 4.000 0.0244 0 8 5.000 2 3.7 2 82 ACATCAGAGAGAGAAAGCAT AGAGAGAGGTGACCTGGAGA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20162938 20162938 G A 94 2 44 48 2 0 G/A 0.0213 2;0 8.0 0 42.0 0 60.0 4.000 0.0220 0 0 2.000 2 3.0 2 91 TTAATTAAGGATTTTAATTA TGTTTTTTGTTGAGAATAAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20162899 20163656 T 95 2 42 46 0 2 T/ 0.0211 2;0 19.5 1 36.5 1 60.0 4.000 0.0230 0.0211 0 3.000 2 2.5 2 87 TACGGATGACATAATATATA GTTAAAGCGAAAACAAACAG 20:20156209-20234556 INV 0 2-0-0 -NA24385_chr_20_20156208_20234556 testbed 20 20195672 20195672 C CT 92 3 42 43 1 2 C/+1 0.0326 2;2 52.7 1 42.2 1 62.8 6.000 0.0353 0 8 9.000 1 0.7 3 85 CTTATTCAGTCACTTCTTAA TTTTTTTTCTTCAAACAGTG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20195672 20195672 C CT 92 3 42 43 1 2 C/+1 0.0326 2;2 50.3 1 40.3 1 60.0 6.000 0.0353 0 8 9.000 1 0.7 3 85 CTTATTCAGTCACTTCTTAA TTTTTTTTCTTCAAACAGTG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20228543 20228543 C T 73 39 12 22 15 24 C/T 0.5342 2;2 40.5 1 38.9 1 59.8 18.500 0.5522 0.0411 1 2.000 1 1.5 37 67 AGCCAACACCCCAACACACT CAGTCCCTCATACTCTGCTC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20162964 20162965 AT GC 106 98 0 0 55 43 GCT/GC 0.9245 0;2 31.7 1 39.5 1 59.6 31.667 0.9406 0.1226 0 1.000 1 1.2 95 101 TTTGTTGAGAATAAAATAGT GCATCCTTACAACTTTGTCT 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20162964 20162964 A G 106 8 0 0 8 0 GC/G 0.0755 0;0 37.6 1 32.0 1 54.9 3.000 0.0594 0 0 1.000 1 2.9 6 101 TTTGTTGAGAATAAAATAGT TGCATCCTTACAACTTTGTC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20228565 20228565 G GT 72 3 24 42 1 2 G/+1 0.0417 2;2 5.9 1 36.7 1 62.4 6.000 0.0462 0.0278 7 8.000 1 1.4 3 65 AGTCCCTCATACTCTGCTCT TTTTTTTCTTGCTACTTAAA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20228565 20228565 G GT 72 3 24 42 1 2 G/+1 0.0417 2;2 5.7 1 35.3 1 60.0 6.000 0.0462 0.0278 7 8.000 1 1.4 3 65 AGTCCCTCATACTCTGCTCT TTTTTTTCTTGCTACTTAAA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20228549 20228549 C A 71 2 25 43 0 2 C/A 0.0282 2;0 44.0 0 42.0 0 60.0 4.000 0.0299 0 1 3.000 1 2.0 2 67 CACCCCAACACACTCCAGTC CTCATACTCTGCTCTGTTTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20195352 20195352 A G 74 2 44 28 2 0 A/G 0.0270 2;0 16.0 1 39.5 1 60.0 4.000 0.0282 0 0 2.000 3 3.0 2 71 CCTGGACCGCTGTAAACAGC GTCACTATTAGAGATGAAGG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20162587 20162588 GA G 86 2 42 42 1 1 A/-1 0.0233 2;2 29.5 1 39.5 1 60.0 4.000 0.0250 0 1 2.000 1 1.5 2 80 CCATAATGGCTAAAATGAAA AGCAACTTCCTATTGAAAAC 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20195328 20195328 G GC 72 3 38 30 3 0 G/+1 0.0417 2;0 25.7 1 41.4 1 61.6 6.000 0.0435 0.0139 5 6.000 1 0.7 3 69 TCACACAAAGAAGACTCACA CCCCCTGGACCGCTGTAAAC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20195328 20195328 G GC 72 3 38 30 3 0 G/+1 0.0417 2;0 25.0 1 40.3 1 60.0 6.000 0.0435 0.0139 5 6.000 1 0.7 3 69 TCACACAAAGAAGACTCACA CCCCCTGGACCGCTGTAAAC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20162573 20162573 T G 85 2 47 36 0 2 T/G 0.0235 2;0 13.0 1 37.0 1 60.0 4.000 0.0253 0.0118 0 2.000 1 4.0 2 79 AAAGATGGGAGCCACCATAA GGCTAAAATGAAAGAAGCAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20228214 20228214 A T 83 2 35 45 2 0 A/T 0.0241 2;0 9.0 0 42.0 0 60.0 4.000 0.0260 0 0 1.000 1 1.0 2 77 TACATTTAAATTATTAAATG GATGAAAAAGTCGGCTCCTC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20162678 20162678 A AGGCCTAAGTCGGTACATAATCATTGAAGCGGACTTTGTTTTATTGGATATTTATTTAGCAGATTTAAAGTTCATTCCACAGAAGGTCTTGGTATCATTTTATAAACCCTCAATGAATACTCTAAATCTCTATGATTTATCTGAGAATAGGGTAAGAAATAAAGATAGCTGCTTGATAATTTGACAACAGTATTCTGTTGGTACGGATGACATAATATATATTTTTAGATCCATGTCATTTTAATTAAGGATTTTAATTAGTGTTTTTTGTTGAGAATAAAATAGTATGCATCCTTACAACTTTGTCTTAAAGTCATTGTATTTTTCAAGGGGCTTTCTCTAGCAAAAACACAGATG 79 5 34 44 5 0 A/+356 0.0633 2;0 43.8 1 42.0 1 60.0 10.000 0.0625 0.0633 70 3.000 1 0 5 80 CCATCTTCTGAAGTCCTGCC GGCCTAAGTCGGTACATAAT 20:20156209-20234556 Insertion 0 5-0-0 @@ -412,7 +412,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20195536 20195537 GA G 97 2 45 50 2 NA24385_chr_20_20156208_20234556 testbed 20 20162780 20162780 T C 68 3 29 36 1 2 T/C 0.0441 2;2 27.7 1 28.3 1 60.0 2.000 0.0312 0 0 3.000 1 2.3 2 64 AAGGTCTTGGTATCATTTTA AAACCCTCAATGAATACTCT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20195531 20195531 A G 98 54 26 18 20 34 A/G 0.5510 2;2 28.7 1 41.0 1 60.0 53.000 0.5521 0.0204 0 2.000 4 1.5 53 96 GTTTAGGGCGCAGGGCAGGC GAAGGAGAGTGGAGAGAGAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20163387 20163388 GT AC 98 2 55 41 2 0 GT/AC 0.0204 2;0 11.0 0 42.0 0 60.0 4.000 0.0208 0 1 1.000 1 3.5 2 96 AATTAAAAGCAATTTCCTTT AAAGGAAATACCCTTGTAGC 20:20156209-20234556 Complex 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20163359 20163359 G GTAGAAGCAAT 98 91 8 5 46 45 G/+10 0.9286 2;2 34.8 1 40.2 1 57.1 182.000 0.8750 0.2347 12 2.000 1 1.2 91 104 TTTTTCCTGCCAATTGCTAT TAGAAGCAATTAAAAGCAAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20163359 20163359 G GTAGAAGCAAT 98 91 8 5 46 45 G/+10 0.9286 2;2 32.6 1 37.7 1 53.5 182.000 0.8750 0.2347 12 2.000 1 1.2 91 104 TTTTTCCTGCCAATTGCTAT TAGAAGCAATTAAAAGCAAT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20163338 20163339 CT C 99 2 48 49 2 0 T/-1 0.0202 2;0 22.0 0 42.0 0 60.0 4.000 0.0213 0 4 5.000 1 1.0 2 94 TTACATTTATTCATTTTTCA TTTTCCTGCCAATTGCTATG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20163337 20163337 A T 98 2 47 46 2 0 A/T 0.0204 2;0 7.0 0 42.0 0 60.0 4.000 0.0222 0 0 1.000 1 1.0 2 90 CTTACATTTATTCATTTTTC CTTTTTCCTGCCAATTGCTA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20163337 20163338 AC TCT 99 2 49 48 0 2 CAC/+4 0.0202 2;0 11.0 0 42.0 0 60.0 4.000 0.0215 0 0 0 0 1.0 2 93 CTTACATTTATTCATTTTTC TTTTTCCTGCCAATTGCTAT 20:20156209-20234556 Complex 0 0 @@ -450,20 +450,20 @@ NA24385_chr_20_20156208_20234556 testbed 20 20229538 20229538 T A 65 2 35 27 0 2 NA24385_chr_20_20156208_20234556 testbed 20 20163639 20163639 T C 99 95 0 0 33 62 C/C 0.9596 0;2 35.5 1 38.1 1 60.0 18.000 1.0000 0 0 4.000 1 1.5 90 90 AGATCACCTCCTCCTCAGGT CCCCACATCTCATTCTAGTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20163639 20163639 T CC 102 4 34 63 2 2 TT/+3 0.0392 2;2 32.2 1 37.6 1 60.0 8.000 0.0488 0.0098 0 0 0 1.8 4 82 AGATCACCTCCTCCTCAGGT CCCCACATCTCATTCTAGTT 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20196375 20196375 T A 59 3 23 33 3 0 T/A 0.0508 2;0 24.3 1 35.3 1 60.0 2.000 0.0392 0 0 3.000 1 1.0 2 51 ATTTCTTTTTCAAGAAACAT TCAATTGTATTTTTTAGTAT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20196357 20196357 T TTCTTTTTCAGATATATATATATATAAATAGGTCG 60 2 25 30 1 1 T/+34 0.0333 2;2 22.1 1 42.8 1 63.2 4.000 0.0392 0.0333 9 3.000 1 0.5 2 51 TGAAAGGTTTTAACCATGAT TCTTTTTCAAGAAACATTTC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20196357 20196357 T TTCTTTTTCAGATATATATATATATAAATAGGTCG 60 2 25 30 1 1 T/+34 0.0333 2;2 21.0 1 40.7 1 60.0 4.000 0.0392 0.0333 9 3.000 1 0.5 2 51 TGAAAGGTTTTAACCATGAT TCTTTTTCAAGAAACATTTC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20229209 20229672 G 69 2 32 37 0 2 G/ 0.0290 2;0 53.0 1 37.8 1 60.0 4.000 0.0286 0.0290 1 2.000 2 0 2 70 GAAAGGAAGGCAGTGGGAGA GTTTTCGGATGAAGCCTAGT 20:20156209-20234556 INV 0 2-2-1 NA24385_chr_20_20156208_20234556 testbed 20 20229210 20229671 G 69 2 30 38 2 0 G/ 0.0290 2;0 21.0 1 42.0 1 60.0 4.000 0.0299 0.0290 0 2.000 2 0 2 67 AAAGGAAGGCAGTGGGAGAG TGTTTTCGGATGAAGCCTAG 20:20156209-20234556 INV 0 2-2-1 NA24385_chr_20_20156208_20234556 testbed 20 20196539 20196539 G A 56 22 17 17 8 14 G/A 0.3929 2;2 31.9 1 37.2 1 60.0 10.000 0.3846 0.0179 0 1.000 1 1.0 20 52 CCACATTAAAAATCATTAAG CTTAGACTATATGGTTTTCA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20229287 20229287 C CT 74 2 37 34 2 0 C/+1 0.0270 2;0 38.0 0 43.1 0 61.6 4.000 0.0286 0 5 6.000 1 0 2 70 GAAAGTTAATTGTGATAGTC TTTTTCTAGGAGTGTCACAA 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20196492 20196492 T TA 50 2 16 30 0 2 T/+1 0.0400 2;0 22.9 1 38.5 1 62.4 4.000 0.0435 0.0200 7 8.000 1 0.5 2 46 TATTCAACTAAAAATAAAAA AAAAAAACTTCATATTCTGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20229287 20229287 C CT 74 2 37 34 2 0 C/+1 0.0270 2;0 37.0 0 42.0 0 60.0 4.000 0.0286 0 5 6.000 1 0 2 70 GAAAGTTAATTGTGATAGTC TTTTTCTAGGAGTGTCACAA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20196492 20196492 T TA 50 2 16 30 0 2 T/+1 0.0400 2;0 22.0 1 37.0 1 60.0 4.000 0.0435 0.0200 7 8.000 1 0.5 2 46 TATTCAACTAAAAATAAAAA AAAAAAACTTCATATTCTGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20196605 20196606 CT C 77 2 39 34 0 2 T/-1 0.0260 2;0 69.0 0 39.5 1 60.0 4.000 0.0274 0 1 2.000 1 0 2 73 TTTTCAAGTGGTAACTGTTG TAAGATGCTATTGTGCCTGT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20163809 20163809 T C 49 24 11 14 11 13 T/C 0.4898 2;2 37.1 1 39.2 1 60.0 23.000 0.4792 0 0 15.000 1 2.0 23 48 TTTCTTTTCTTTTCTTTTTT TTTTTTTTAGATAGAGTCTC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20163802 20163804 CTT C 48 30 5 3 14 16 T/-2 0.6250 2;2 39.0 1 39.1 1 59.6 14.000 0.6222 0.0208 13 15.000 1 2.0 28 45 ATTTTTTTTTCTTTTCTTTT TTTTTTTTTTTTTAGATAGA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20163782 20163782 A AT 50 3 18 24 3 0 A/+1 0.0600 2;0 9.5 1 39.0 1 63.2 6.000 0.0789 0.0400 9 10.000 1 1.8 3 38 GGAATAAGACTTACCTTCTG TTTTTTTTTCTTTTCTTTTC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20163782 20163782 A AT 50 3 18 24 3 0 A/+1 0.0600 2;0 9.0 1 37.0 1 60.0 6.000 0.0789 0.0400 9 10.000 1 1.8 3 38 GGAATAAGACTTACCTTCTG TTTTTTTTTCTTTTCTTTTC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20197229 20197229 T A 80 2 29 49 2 0 T/A 0.0250 2;0 61.0 0 42.0 0 60.0 4.000 0.0282 0 0 2.000 2 1.5 2 71 CTGGGCATGGGGAAGCCTTT GTGCTGATTAATTACAGCAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20229977 20229978 GA G 73 3 38 32 3 0 A/-1 0.0411 2;0 11.0 0 42.0 0 60.0 6.000 0.0435 0 1 2.000 1 0 3 69 ATTGCTTGTGCCCAGGAGTT AGACCAGCCTGGGCAACGTA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20197290 20197545 A 67 2 28 36 0 2 A/ 0.0299 2;0 33.0 1 41.2 1 60.0 4.000 0.0345 0.0299 0 6.000 1 0 2 58 TGGTTGGGGGTTTTATTTTT TAGCCTTGTGTGTTTTATTA 20:20156209-20234556 INV 0 2-0-0 -NA24385_chr_20_20156208_20234556 testbed 20 20230017 20230017 C CA 80 2 41 32 0 2 C/+1 0.0250 2;0 37.9 1 44.8 0 64.0 4.000 0.0282 0 11 12.000 1 3.2 2 71 TAGGGAGAGTCCCATTTCTA AAAAAAAAAAATTAAATTAG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20230017 20230017 C CA 80 2 41 32 0 2 C/+1 0.0250 2;0 35.5 1 42.0 0 60.0 4.000 0.0282 0 11 12.000 1 3.2 2 71 TAGGGAGAGTCCCATTTCTA AAAAAAAAAAATTAAATTAG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20230017 20230020 CAAA C 77 3 37 33 3 0 A/-3 0.0390 2;0 50.0 0 42.0 0 60.0 6.000 0.0395 0 8 11.000 1 0 3 76 TAGGGAGAGTCCCATTTCTA AAAAAAAATTAAATTAGCCA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20230017 20230018 CA C 77 2 37 33 2 0 A/-1 0.0260 2;0 42.0 1 42.0 0 60.0 4.000 0.0263 0 10 11.000 1 0 2 76 TAGGGAGAGTCCCATTTCTA AAAAAAAAAATTAAATTAGC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20230017 20230021 CAAAA C 77 2 37 33 1 1 A/-4 0.0260 2;2 51.5 1 42.0 0 60.0 4.000 0.0263 0 7 11.000 1 1.0 2 76 TAGGGAGAGTCCCATTTCTA AAAAAAATTAAATTAGCCAG 20:20156209-20234556 Deletion 0 0 @@ -485,11 +485,11 @@ NA24385_chr_20_20156208_20234556 testbed 20 20165043 20165043 T G 92 4 39 49 4 0 NA24385_chr_20_20156208_20234556 testbed 20 20197820 20197820 C G 76 2 34 40 2 0 C/G 0.0263 2;0 6.0 0 42.0 0 60.0 4.000 0.0282 0 2 1.000 1 1.0 2 71 GCTTATTCTTTCAAAACAAT ATTGTGCATTGCTTTTACAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20230637 20230638 AT A 67 2 32 32 1 1 T/-1 0.0299 2;2 55.5 1 42.0 0 60.0 4.000 0.0312 0 3 4.000 1 1.5 2 64 ATTTCCTCTCACTATCCATT TTTCCTGTGATAGGCCAGTC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20197847 20197847 A C 75 3 39 33 1 2 A/C 0.0400 2;2 11.7 1 24.7 1 60.0 2.000 0.0290 0.0267 0 1.000 1 4.3 2 69 CATTGCTTTTACAAAAGCCC GCGAGCCTTTTGGTGTACAG 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20165079 20165079 G GA 93 2 46 43 2 0 G/+1 0.0215 2;0 49.3 0 38.0 1 61.6 4.000 0.0222 0 5 6.000 1 0 2 90 AGTGGGAGGAGACAAACAGT AAAAACAAAATAAAGAGAAA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20165079 20165079 G GA 93 2 46 43 2 0 G/+1 0.0215 2;0 48.0 0 37.0 1 60.0 4.000 0.0222 0 5 6.000 1 0 2 90 AGTGGGAGGAGACAAACAGT AAAAACAAAATAAAGAGAAA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20165083 20165083 A T 90 2 45 43 1 1 A/T 0.0222 2;2 15.0 1 42.0 0 60.0 4.000 0.0227 0 0 5.000 1 1.0 2 88 GGAGGAGACAAACAGTGAAA ACAAAATAAAGAGAAAGTAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20197830 20205044 T 74 2 36 38 2 0 T/+7215 0.0270 2;0 45.0 1 40.9 1 60.0 4.000 0.0282 0.0270 0 0 0 0.5 2 71 TCAAAACAATCATTGTGCAT CAAATACTATCATTCCTTCC 20:20156209-20234556 DUP 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20197838 20197839 CA C 76 2 39 35 2 0 A/-1 0.0263 2;0 25.0 0 42.0 0 60.0 4.000 0.0282 0 3 4.000 1 1.0 2 71 ATCATTGTGCATTGCTTTTA AAAGCCCAGCGAGCCTTTTG 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20197439 20197439 A AT 56 2 26 23 1 1 A/+1 0.0357 2;2 40.2 1 42.4 1 64.4 4.000 0.0435 0 12 13.000 1 1.6 2 46 AGTGGAAATTTTCTATACCA TTTTTTTTTTTTCATGGGAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20197439 20197439 A AT 56 2 26 23 1 1 A/+1 0.0357 2;2 37.5 1 39.5 1 60.0 4.000 0.0435 0 12 13.000 1 1.6 2 46 AGTGGAAATTTTCTATACCA TTTTTTTTTTTTCATGGGAT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20230179 20230179 T G 83 2 37 43 2 0 T/G 0.0241 2;0 16.0 0 32.0 0 60.0 4.000 0.0274 0 0 2.000 2 5.0 2 73 GGTGACAGAGTGAGATCTTG CTCAAGTAAATAAAATCATT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20197384 20197384 C T 68 2 37 28 0 2 C/T 0.0294 2;0 9.0 0 42.0 0 60.0 4.000 0.0317 0 0 2.000 3 3.5 2 63 TTTTAAACTGCTGTCAAAAT ATCAGGAATTGATTCAAAGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20230251 20230252 CT C 75 2 36 37 0 2 T/-1 0.0267 2;0 69.0 0 42.0 0 60.0 4.000 0.0286 0 3 4.000 1 3.0 2 70 CCCACATTCTTCAACACTTC TTTGTGACTTAGTAAAGTTT 20:20156209-20234556 Deletion 0 0 @@ -507,7 +507,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20231163 20231163 C CAGGAGGATCACTTGA NA24385_chr_20_20156208_20234556 testbed 20 20231111 20231111 C T 82 2 37 42 2 0 C/T 0.0244 2;0 10.0 0 42.0 0 60.0 4.000 0.0260 0 0 2.000 1 3.0 2 77 TTTGAAGAGGACTGTGCTGC AAGCATAGAAGTGGCGCGTG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20231112 20231112 A T 81 2 36 42 2 0 A/T 0.0247 2;0 34.0 0 42.0 0 60.0 4.000 0.0253 0 0 2.000 1 2.0 2 79 TTGAAGAGGACTGTGCTGCC AGCATAGAAGTGGCGCGTGC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20197946 20197946 T A 64 2 30 31 1 1 T/A 0.0312 2;2 43.0 1 42.0 0 60.0 4.000 0.0328 0 1 2.000 1 1.0 2 61 TATGCTTAATTTCTTCAGAC AAGTCAGAGATACAATTGGA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20230695 20230695 G GT 73 4 35 34 4 0 G/+1 0.0548 2;0 44.1 0 34.1 1 61.6 3.000 0.0455 0 5 6.000 1 0.3 3 66 TATTAAGAAGAAATTTTCTT TTTTTAAGTTGTTTCACAGA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20230695 20230695 G GT 73 4 35 34 4 0 G/+1 0.0548 2;0 43.0 0 33.2 1 60.0 3.000 0.0455 0 5 6.000 1 0.3 3 66 TATTAAGAAGAAATTTTCTT TTTTTAAGTTGTTTCACAGA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20230676 20230676 A C 68 3 35 28 2 1 A/C 0.0441 2;2 13.0 1 31.7 1 60.0 2.000 0.0312 0 1 2.000 1 2.3 2 64 GTCCCCGATTTTCTTTTCTT TTAAGAAGAAATTTTCTTGT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20230676 20230676 A T 68 2 35 28 1 1 A/T 0.0294 2;2 44.0 1 42.0 0 60.0 4.000 0.0312 0 1 2.000 1 1.0 2 64 GTCCCCGATTTTCTTTTCTT TTAAGAAGAAATTTTCTTGT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20230681 20230681 G T 73 3 37 33 2 1 G/T 0.0411 2;2 7.3 1 39.8 1 60.0 6.000 0.0423 0.0137 0 2.000 1 2.0 3 71 CGATTTTCTTTTCTTATTAA AAGAAATTTTCTTGTTTTTA 20:20156209-20234556 SNV 0 0 @@ -527,23 +527,23 @@ NA24385_chr_20_20156208_20234556 testbed 20 20166029 20166029 G GAGGTGGTGGAGGCTG NA24385_chr_20_20156208_20234556 testbed 20 20198911 20198911 T G 100 3 47 49 2 1 T/G 0.0300 2;2 15.3 1 23.3 1 60.0 2.000 0.0217 0 0 1.000 1 4.0 2 92 CTGTGCTATTCTCGTGGTAA GAATAAGTCTCACGAGATCT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20231679 20231679 A G 70 2 34 34 2 0 A/G 0.0286 2;0 8.0 0 42.0 0 60.0 4.000 0.0317 0 0 2.000 1 2.0 2 63 TGCTGCGAACCTAACTCCCT ATTGCTATATTCTTGAAGTA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20198851 20199164 A 94 3 42 46 3 0 A/ 0.0319 2;0 32.7 1 39.1 1 59.3 6.000 0.0390 0.0319 0 4.000 1 0.7 3 77 TCCCACATCTTGTGGGAGGG GAGCACAGCCTAAACTACTG 20:20156209-20234556 INV 0 3-0-0 -NA24385_chr_20_20156208_20234556 testbed 20 20231284 20231284 G GA 81 2 30 46 2 0 G/+1 0.0247 2;0 63.0 0 43.4 0 62.0 4.000 0.0267 0 6 7.000 1 0 2 75 TTAGTGTTTTTATGTTAAGA AAAAAAGGAAGAAAAGAATC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20231284 20231284 G GA 81 2 30 46 2 0 G/+1 0.0247 2;0 61.0 0 42.0 0 60.0 4.000 0.0267 0 6 7.000 1 0 2 75 TTAGTGTTTTTATGTTAAGA AAAAAAGGAAGAAAAGAATC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20198496 20198497 AC A 70 2 25 43 1 1 C/-1 0.0286 2;2 55.5 1 42.0 0 60.0 4.000 0.0299 0 1 2.000 1 0 2 67 TCTTGTATTGCCTCTGCATG CATGCAGCCTTCTCCTTTCA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20198487 20198488 CT C 73 2 29 42 0 2 T/-1 0.0274 2;0 37.0 0 42.0 0 60.0 4.000 0.0317 0 0 3.000 1 1.0 2 63 GTGTCTGCTTCTTGTATTGC CTGCATGACCATGCAGCCTT 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20231256 20231256 T TA 73 3 25 43 1 2 T/+1 0.0411 2;2 49.6 1 43.1 0 61.6 6.000 0.0448 0 5 6.000 1 0.7 3 67 ATAATAAATAGATGAATAAA AAAAATGTTAGTGTTTTTAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20231256 20231256 T TA 73 3 25 43 1 2 T/+1 0.0411 2;2 48.3 1 42.0 0 60.0 6.000 0.0448 0 5 6.000 1 0.7 3 67 ATAATAAATAGATGAATAAA AAAAATGTTAGTGTTTTTAT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20198567 20198570 TATG CATA 93 11 41 38 5 6 TATG/CATA 0.1183 2;2 9.4 1 41.3 1 60.0 22.000 0.1279 0.0108 0 1.000 1 2.5 11 86 TCCATTCATGTAGACTGACC GGTCAGTGGGTGTGTCATCC 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20231403 20231404 CT C 85 3 45 36 2 1 T/-1 0.0353 2;2 33.0 1 42.0 0 60.0 6.000 0.0385 0 2 3.000 1 2.0 3 78 TGGTTTACCTGAGGTCAATC TTCAGAAAATTCTGGAAACA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20198610 20198611 CT C 82 2 43 37 2 0 T/-1 0.0244 2;0 66.5 1 42.0 0 60.0 4.000 0.0274 0 3 4.000 1 1.5 2 73 CTTCCAAATCCTTGCCCTGG TTTCCCTCTCATCCAGAAAC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20198621 20198621 C T 80 2 47 30 2 0 C/T 0.0250 2;0 62.0 0 42.0 0 60.0 4.000 0.0278 0 1 1.000 1 3.0 2 72 TTGCCCTGGCTTTTCCCTCT ATCCAGAAACTTGTTCCCTC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20231997 20231997 C A 59 2 26 31 0 2 C/A 0.0339 2;0 23.0 1 39.5 1 60.0 4.000 0.0392 0 0 4.000 1 1.0 2 51 ACACACACACACACACACAC CCTCCCACCCTCCCAGTTGT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20231976 20231976 A AAC 86 22 19 29 14 7 A/+2 0.2558 2;2 31.6 1 39.7 1 61.5 44.000 0.3143 0.0349 20 11.000 2 1.3 22 70 CACACACACACATACAGATA ACACACACACACACACACAC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20231976 20231976 A AAC 86 22 19 29 14 7 A/+2 0.2558 2;2 28.4 1 35.7 1 55.2 44.000 0.3143 0.0349 20 11.000 2 1.3 22 70 CACACACACACATACAGATA ACACACACACACACACACAC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20231976 20231976 A C 86 3 19 29 0 3 A/C 0.0349 2;0 24.0 1 26.9 1 58.3 2.000 0.0286 0.0116 0 3.000 1 3.7 2 70 CACACACACACATACAGATA ACACACACACACACACACAC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20231953 20231953 T TCA 102 3 42 49 0 3 T/+2 0.0294 2;0 33.3 1 45.6 0 65.2 6.000 0.0330 0 14 8.000 2 2.5 3 91 AAGGTATAGTATGAGTGATT CACACACACACACATACAGA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20231953 20231953 T TCA 102 3 42 49 0 3 T/+2 0.0294 2;0 30.7 1 42.0 0 60.0 6.000 0.0330 0 14 8.000 2 2.5 3 91 AAGGTATAGTATGAGTGATT CACACACACACACATACAGA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20232049 20232050 CT C 77 2 28 47 0 2 T/-1 0.0260 2;0 39.0 0 42.0 0 60.0 4.000 0.0290 0 2 3.000 1 1.5 2 69 AGCCAGGTGGAACAATTTAG TTAATGGGAAGATGTCAATT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20166521 20166522 CT C 62 3 31 27 2 1 T/-1 0.0484 2;2 15.7 1 40.3 1 60.0 6.000 0.0508 0 4 5.000 1 0 3 59 TTTTATTATCAAATAAAGAC TTTTCTCATGATTTTTGCCT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20166585 20166586 AT A 76 3 33 40 0 3 T/-1 0.0395 2;0 53.0 0 42.0 0 60.0 6.000 0.0405 0 6 7.000 1 0 3 74 TTATATAGCTATGCCAGCTT TTTTTTGCTATTAGTTGCCA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20166585 20166585 A AT 74 5 28 34 2 3 A/+1 0.0676 2;2 34.9 1 37.2 1 62.4 4.000 0.0615 0 7 8.000 1 1.9 4 65 TTATATAGCTATGCCAGCTT TTTTTTTGCTATTAGTTGCC 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20166585 20166585 A ATT 74 2 28 34 0 2 A/+2 0.0270 2;0 21.8 0 42.4 1 62.4 4.000 0.0308 0 7 9.000 1 0 2 65 TTATATAGCTATGCCAGCTT TTTTTTTGCTATTAGTTGCC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20166585 20166585 A AT 74 5 28 34 2 3 A/+1 0.0676 2;2 33.6 1 35.8 1 60.0 4.000 0.0615 0 7 8.000 1 1.9 4 65 TTATATAGCTATGCCAGCTT TTTTTTTGCTATTAGTTGCC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20166585 20166585 A ATT 74 2 28 34 0 2 A/+2 0.0270 2;0 21.0 0 40.8 1 60.0 4.000 0.0308 0 7 9.000 1 0 2 65 TTATATAGCTATGCCAGCTT TTTTTTTGCTATTAGTTGCC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20199415 20199415 T A 78 2 44 32 2 0 T/A 0.0256 2;0 46.0 0 42.0 0 60.0 4.000 0.0286 0 0 1.000 1 1.0 2 70 GGCATCTGGTAGATCCTTGA ATGTATCTGTCAAATTGAAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20232191 20232191 C G 65 2 33 30 2 0 C/G 0.0308 2;0 21.0 0 42.0 0 60.0 4.000 0.0317 0 1 3.000 1 2.0 2 63 ACCAGATGTCTAATTAATGC CGCTGTCAGCTGCTCAGATG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20198962 20198962 T TTCTTCCTCATTTTGTCTTGCCACCACCATGTAAGAAGTGCCTTTCACCCTCCACCATGATTGTGAGACCTTCCCCAGCCACGTGGAACTGTAAGTCCAATTAAACCTCTTTCTTTTATAAGTTACCCAGTCTCGGGTATGTCTTTATCAGCAACA 88 4 52 33 1 3 T/+155 0.0455 2;2 24.0 1 36.8 1 48.5 8.000 0.0471 0.0455 70 2.000 1 1.0 4 85 TCAGGGGTTTCTACTTTTGC TCTTCCTCATTTTGTCTTGC 20:20156209-20234556 Insertion 0 4-2-2 @@ -557,9 +557,9 @@ NA24385_chr_20_20156208_20234556 testbed 20 20199115 20199115 G A 88 40 20 27 17 NA24385_chr_20_20156208_20234556 testbed 20 20166970 20166970 C T 89 4 55 28 0 4 C/T 0.0449 2;0 39.0 0 42.0 0 60.0 8.000 0.0476 0 1 1.000 1 2.8 4 84 CGCACAATGTTTTTAAAGTT ATGCATGTTGGAGTATGCAT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20166957 20166957 T C 80 80 0 0 50 30 C/C 1.0000 0;2 39.1 1 40.0 1 60.0 39.000 1.0000 0 3 1.000 1 1.7 78 78 GTTTCTCTCACTTCGCACAA GTTTTTAAAGTTCATGCATG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20232554 20232554 A T 63 4 25 34 2 2 A/T 0.0635 2;2 21.5 1 40.8 1 60.0 8.000 0.0702 0 0 3.000 1 1.0 4 57 AATTCATAAAAGCACCCTTC GGGCCCGCACACATAACCAG 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20232612 20232612 G GA 53 2 30 21 1 1 G/+1 0.0377 2;2 36.4 1 43.1 0 61.6 4.000 0.0392 0 5 6.000 1 0.5 2 51 CTCCCAGAAACCCATTCCAA AAAAACATTCTGCTCGAGGA 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20167057 20167057 C CCATTCATCAATTGATGGGCATTCGGGTTGTTTTTTCTTGGGCTATTGTGAATAATGCTGCTATGAAAATTCATGTACAGGTTTTGTGTGGACATATGTTTTTAATTCGCTTGAGTATTTTTCTAGTGCTTTTGTGGTCTTGTTTGTTACATTTACATCTGTAATCCACTGAACTAGATTTTGGTGTAAGGTGGTCATATAACAACCAAGTTCTTATCTTTCA 102 4 42 35 0 4 C/+222 0.0392 2;0 26.2 1 46.6 1 68.4 8.000 0.0541 0.0392 22 2.000 2 0 4 74 ATCAATCATACTCTGTTTAT CATTCATCAATTGATGGGCA 20:20156209-20234556 Insertion 0 4-0-0 -NA24385_chr_20_20156208_20234556 testbed 20 20167154 20167154 G GT 94 2 48 42 1 1 G/+1 0.0213 2;2 16.9 1 43.1 0 61.6 4.000 0.0233 0 5 6.000 1 0.5 2 86 CAGGTTTTGTGTGGACATAT TTTTTAATTCGCTTGAGTAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20232612 20232612 G GA 53 2 30 21 1 1 G/+1 0.0377 2;2 35.5 1 42.0 0 60.0 4.000 0.0392 0 5 6.000 1 0.5 2 51 CTCCCAGAAACCCATTCCAA AAAAACATTCTGCTCGAGGA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20167057 20167057 C CCATTCATCAATTGATGGGCATTCGGGTTGTTTTTTCTTGGGCTATTGTGAATAATGCTGCTATGAAAATTCATGTACAGGTTTTGTGTGGACATATGTTTTTAATTCGCTTGAGTATTTTTCTAGTGCTTTTGTGGTCTTGTTTGTTACATTTACATCTGTAATCCACTGAACTAGATTTTGGTGTAAGGTGGTCATATAACAACCAAGTTCTTATCTTTCA 102 4 42 35 0 4 C/+222 0.0392 2;0 23.0 1 40.9 1 60.0 8.000 0.0541 0.0392 22 2.000 2 0 4 74 ATCAATCATACTCTGTTTAT CATTCATCAATTGATGGGCA 20:20156209-20234556 Insertion 0 4-0-0 +NA24385_chr_20_20156208_20234556 testbed 20 20167154 20167154 G GT 94 2 48 42 1 1 G/+1 0.0213 2;2 16.5 1 42.0 0 60.0 4.000 0.0233 0 5 6.000 1 0.5 2 86 CAGGTTTTGTGTGGACATAT TTTTTAATTCGCTTGAGTAT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20166714 20166714 A G 70 70 0 0 43 27 G/G 1.0000 0;2 39.0 1 39.8 1 58.3 34.000 1.0000 0.0143 0 1.000 1 1.5 68 68 CACTTCAAGTGTACAATTCA TGGTTTGTAGTAGAGTTACA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20166693 20166693 C A 69 2 42 25 0 2 C/A 0.0290 2;0 12.0 0 42.0 0 60.0 4.000 0.0294 0 0 2.000 1 4.0 2 68 TCACATGCCATACAATTTGT CACTTCAAGTGTACAATTCA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20166699 20166699 C G 73 4 44 25 0 4 C/G 0.0548 2;0 7.2 1 42.0 0 60.0 8.000 0.0563 0 0 2.000 1 3.5 4 71 GCCATACAATTTGTCCACTT AAGTGTACAATTCAATGGTT 20:20156209-20234556 SNV 0 0 @@ -575,7 +575,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20199631 20199631 C G 70 3 30 37 1 2 NA24385_chr_20_20156208_20234556 testbed 20 20233000 20233000 A T 55 4 26 25 0 4 A/T 0.0727 2;0 27.0 0 42.0 0 60.0 8.000 0.0755 0 0 1.000 1 1.0 4 53 GCAGCAGATTTTAATATTCC CTTTGTAATATGCATGAGTG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20167470 20167470 C T 91 91 0 0 41 50 T/T 1.0000 0;2 35.5 1 39.0 1 60.0 12.000 1.0000 0.0330 1 1.000 1 1.4 84 84 GATATTTTATTGTATCAGCA GAGGAGGAATGGCATTGTCC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20232990 20232990 T TTAATATTCCACTTTGTAATATGCATGAGTGTTTCATGTAGTTTACAGCAGTAAGGTATTTCTCCAGTGACAAGAGGCTTACTCTAACTCAAGGATGAAGTCTTAGACCAAGTTTGTGAAACCCATGGCCCATGGGCCCAAGGTGGCTTTGAATGTGGCTCAACACAAATTTGTAAACTTTCTTAAAACATTATGACTTTTTTTTTTGCAGTTTTTTTTCTTCAGCTTATCAGCTATCTTTAGTGTTTGTATATTTTATGTGTGGTCCAAGATGATTCTTCTTGTTTCAGTGTGGCTCAGGGAAGCCAAAAGATTAGACACCCCACTTAGACCATCTTGTGAATAGTTGTGGGATTCGATGCGAGCCTGTGTATGACAGTTTTCCTTCACGTCGCCAAGCGCAGAGGAGGCAGCGCATGAAGGAGACAGGGTCTCCACCTGGGTGTTGCCACAGAATGTGCTCAGCAGCTCTAAGCATCACTTACCCTATATTTTCTGCCTTGGCCGCACATTGAGATGACCTGGGTGCTTTGAAAACACATCCATGCCTAGGCTCCGCCCCCAGAGGTTGTTTTAATTATTCTAGGGTGGGACCCAG 84 2 24 30 2 0 T/+597 0.0238 2;0 22.0 1 40.0 1 60.0 4.000 0.0370 0.0238 70 4.000 1 0 2 54 ATGTCTTAGGGCAGCAGATT TAATATTCCACTTTGTAATA 20:20156209-20234556 Insertion 0 2-0-0 -NA24385_chr_20_20156208_20234556 testbed 20 20200196 20200196 G GA 110 3 43 62 1 2 G/+1 0.0273 2;2 58.9 1 41.4 1 61.6 6.000 0.0297 0 5 6.000 1 0.3 3 101 TATGATATGGATTGGAAAGA AAAAATGACCTGAAATTCTC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20200196 20200196 G GA 110 3 43 62 1 2 G/+1 0.0273 2;2 57.3 1 40.3 1 60.0 6.000 0.0297 0 5 6.000 1 0.3 3 101 TATGATATGGATTGGAAAGA AAAAATGACCTGAAATTCTC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20167431 20167431 T TAAAAGTTAAATAGATTAGGATATTTTATTGTATCAGCACGAGGAGGAATGGCATTGTCCCATTGAGTAATAATACCCTAGTAACTGCAGAGAATTCACTGCAAGGCTAGCTACATAATATACAGGACCCATTACAAAATGAA 83 2 37 46 1 1 T/+142 0.0241 2;2 21.0 1 38.3 1 60.0 4.000 0.0247 0.0241 70 6.000 1 1.0 2 81 GCACAGATGTTCCCTACAGT AAAAGTTAAATAGATTAGGA 20:20156209-20234556 Insertion 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20167438 20167439 TA T 85 2 34 49 1 1 A/-1 0.0235 2;2 49.5 1 42.0 0 60.0 4.000 0.0247 0 2 3.000 1 1.0 2 81 TGTTCCCTACAGTTAAAAGT AATAGATTAGGATATTTTAT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20200307 20200307 A T 98 2 53 43 0 2 A/T 0.0204 2;0 48.0 0 42.0 0 60.0 4.000 0.0225 0 2 2.000 1 2.5 2 89 AGGATGGGAAAACAACCAAC ATATAAATTTTTTTCATTTC 20:20156209-20234556 SNV 0 0 @@ -584,10 +584,10 @@ NA24385_chr_20_20156208_20234556 testbed 20 20200258 20200258 T A 112 3 52 57 0 NA24385_chr_20_20156208_20234556 testbed 20 20233142 20233144 ATG A 43 3 21 19 0 3 T/-2 0.0698 2;0 37.0 0 42.0 0 60.0 6.000 0.0732 0 2 2.000 2 0 3 41 TGGGCCCAAGGTGGCTTTGA TGGCTCAACACAAATTTGTA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20200329 20200329 C TA 96 8 44 42 6 2 AC/+3 0.0833 2;2 11.0 1 33.8 1 60.0 7.000 0.0805 0.0625 0 0 0 1.4 7 87 TATAAATTTTTTTCATTTCA AAAAATCTGAGAATAAATTT 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20200329 20200329 C T 91 55 19 15 27 28 C/T 0.6044 2;2 35.7 1 37.1 1 59.2 8.167 0.6125 0.0110 0 5.000 1 1.6 49 80 TATAAATTTTTTTCATTTCA AAAAATCTGAGAATAAATTT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20233186 20233186 C CT 46 5 22 17 3 2 C/+1 0.1087 2;2 26.3 1 38.1 1 63.6 4.000 0.1000 0.0217 10 11.000 1 2.8 4 40 ACTTTCTTAAAACATTATGA TTTTTTTTTTGCAGTTTTTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20233186 20233186 C CT 46 5 22 17 3 2 C/+1 0.1087 2;2 24.8 1 35.9 1 60.0 4.000 0.1000 0.0217 10 11.000 1 2.8 4 40 ACTTTCTTAAAACATTATGA TTTTTTTTTTGCAGTTTTTT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20200410 20200411 CA C 89 37 18 34 18 19 A/-1 0.4157 2;2 36.9 1 41.9 1 60.0 74.000 0.4253 0.0225 3 4.000 1 0.5 37 87 ATTATTAAGACATTCATAAT AAATGTGTATTATAAACTTA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20233163 20233164 TA T 35 4 16 14 2 2 A/-1 0.1143 2;2 28.5 1 42.0 0 60.0 8.000 0.1212 0 2 3.000 1 0 4 33 TGTGGCTCAACACAAATTTG AACTTTCTTAAAACATTATG 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20199975 20199975 A AT 101 12 49 36 5 7 A/+1 0.1188 2;2 23.2 1 38.1 1 62.8 11.000 0.1250 0.0198 8 9.000 1 0.8 11 88 AATATTGATTTTATCCCAAA TTTTTTTTCCAGAGTTGCTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20199975 20199975 A AT 101 12 49 36 5 7 A/+1 0.1188 2;2 22.2 1 36.4 1 60.0 11.000 0.1250 0.0198 8 9.000 1 0.8 11 88 AATATTGATTTTATCCCAAA TTTTTTTTCCAGAGTTGCTT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20167207 20167208 AT A 114 2 54 58 2 0 T/-1 0.0175 2;0 56.0 0 42.0 0 60.0 4.000 0.0185 0 2 3.000 1 0.5 2 108 TTTGTGGTCTTGTTTGTTAC TTACATCTGTAATCCACTGA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20232744 20232745 TA T 63 2 33 27 2 0 A/-1 0.0317 2;0 55.0 0 42.0 0 60.0 4.000 0.0333 0 2 3.000 1 1.0 2 60 AACCAGGCATGCATTTGTGG AATTAATTTATGCCTCAAGA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20232710 20232710 C T 60 2 32 26 2 0 C/T 0.0333 2;0 39.0 0 42.0 0 60.0 4.000 0.0339 0 0 1.000 1 1.0 2 59 ACACATACTGCTCGCCCTAG AGAATCCAGACGCAACCAGG 20:20156209-20234556 SNV 0 0 @@ -600,12 +600,12 @@ NA24385_chr_20_20156208_20234556 testbed 20 20232768 20232768 C A 62 3 35 23 0 3 NA24385_chr_20_20156208_20234556 testbed 20 20200011 20200011 T A 92 5 50 36 0 5 T/A 0.0543 2;0 53.0 0 39.0 1 60.0 10.000 0.0562 0 0 1.000 1 1.4 5 89 TGCTTTTCTAGTTGGAGAAA GACTCTTTGGCATAGTAACT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20167347 20167347 C T 78 77 1 0 37 40 C/T 0.9872 0;2 33.8 1 39.1 1 60.0 11.833 1.0000 0.0641 1 1.000 1 1.6 71 71 TTATTAGTTAATTATAGATA AGATATTGTTCTTTGCAAAT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20232882 20232882 T A 63 3 25 35 3 0 T/A 0.0476 2;0 61.0 0 38.7 1 60.0 6.000 0.0492 0 0 2.000 1 2.0 3 61 AAATAGGAAATCTGATTGAT GGTTTCCCAGTGTCCATGCT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20232837 20232837 A AT 66 2 29 33 1 1 A/+1 0.0303 2;2 13.3 1 37.4 1 61.2 4.000 0.0345 0.0152 4 5.000 1 0 2 58 TGCACCTTCTGTCGACCCTT TTTTATTTTGTCTCTCAGTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20232837 20232837 A AT 66 2 29 33 1 1 A/+1 0.0303 2;2 13.0 1 36.6 1 60.0 4.000 0.0345 0.0152 4 5.000 1 0 2 58 TGCACCTTCTGTCGACCCTT TTTTATTTTGTCTCTCAGTT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20232834 20232839 CTTATT C 67 2 30 35 0 2 T/-5 0.0299 2;0 46.0 0 42.0 0 60.0 4.000 0.0323 0 7 4.000 1 0 2 62 ACGTGCACCTTCTGTCGACC TTATTTTGTCTCTCAGTTAT 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20200153 20200153 G GAT 114 3 49 58 3 0 G/+2 0.0263 2;0 65.1 0 37.2 1 62.0 6.000 0.0309 0 6 4.000 2 1.7 3 97 GCAACTGTTAATGCATCTCT ATATATCATATGTCCCACCA 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20200760 20200760 A AC 93 4 39 48 3 1 A/+1 0.0430 2;2 15.0 1 43.4 1 62.0 8.000 0.0471 0.0323 6 7.000 1 0.8 4 85 GGGTTGGAACTTTCAGGCCT CCCCCCAGCCTCCGCGGAGA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20200153 20200153 G GAT 114 3 49 58 3 0 G/+2 0.0263 2;0 63.0 0 36.0 1 60.0 6.000 0.0309 0 6 4.000 2 1.7 3 97 GCAACTGTTAATGCATCTCT ATATATCATATGTCCCACCA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20200760 20200760 A AC 93 4 39 48 3 1 A/+1 0.0430 2;2 14.5 1 42.0 1 60.0 8.000 0.0471 0.0323 6 7.000 1 0.8 4 85 GGGTTGGAACTTTCAGGCCT CCCCCCAGCCTCCGCGGAGA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20200786 20200786 G GGAGCCAGAAGTTGAGTTCAACCACCAGTGGCCAATGATTTCATCAACCATGCCTACACGATGAAGCCTCCATAAAACCCTAACCAAAGCGGTTAGGAGAACTTCTGGGTGGTAAACACTGGAGGTGCTGGGAGGGTGGCATGTCTGGAAAGCACATGGAAGCTCTGTGCTTTTCCCCCTGCCATGCCCTGTGCAGCTGGCTATTTCTGAGCCCCACCCTTTTATAATGGCCAGTAATACAGTTAGCAAACTGTTTCTCCAAGTTCTGTGAGCCATCCTAGCAAATTATCGAACCTAAGCAGGGGTCATGGGAACCTCCAGTTGATAGCCAGCCGGTCAGAAGTACAGGTGGCAACATGGACTTGCGATTGGCATGTGA 96 3 36 45 0 3 G/+378 0.0312 2;0 16.7 1 40.1 1 60.0 6.000 0.0370 0.0312 70 2.000 2 0 3 81 CAGCCTCCGCGGAGAGGAGA GAGCCAGAAGTTGAGTTCAA 20:20156209-20234556 Insertion 0 3-0-0 -NA24385_chr_20_20156208_20234556 testbed 20 20233547 20233547 G GC 70 2 35 32 0 2 G/+1 0.0286 2;0 46.2 0 40.6 1 61.6 4.000 0.0303 0 5 6.000 1 0.5 2 66 CACATCCATGCCTAGGCTCC CCCCCAGAGGTTGTTTTAAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20233547 20233547 G GC 70 2 35 32 0 2 G/+1 0.0286 2;0 45.0 0 39.5 1 60.0 4.000 0.0303 0 5 6.000 1 0.5 2 66 CACATCCATGCCTAGGCTCC CCCCCAGAGGTTGTTTTAAT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20200894 20200894 G C 63 2 26 35 0 2 G/C 0.0317 2;0 10.0 0 42.0 0 60.0 4.000 0.0328 0 0 2.000 3 1.0 2 61 GCGGTTAGGAGAACTTCTGG TGGTAAACACTGGAGGTGCT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20233640 20233640 A T 73 2 37 32 0 2 A/T 0.0274 2;0 6.0 0 42.0 0 60.0 4.000 0.0299 0 0 1.000 1 3.0 2 67 CTAAGCTAAAGCTGAGAACC CAAGCTTGCACTTTCTTGAC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20233602 20233602 C T 81 80 0 1 48 32 C/T 0.9877 0;2 31.1 1 39.8 1 60.0 39.000 1.0000 0.0741 0 1.000 1 1.4 78 78 ACCCAGTCATCAGTATTTTT AGGTGCCCCACATGCTTCTA 20:20156209-20234556 SNV 0 0 @@ -625,7 +625,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20234033 20234033 T A 78 2 36 40 2 0 NA24385_chr_20_20156208_20234556 testbed 20 20201259 20201259 G T 90 2 41 47 1 1 G/T 0.0222 2;2 9.5 1 37.0 1 60.0 4.000 0.0227 0.0111 0 2.000 2 4.0 2 88 CAGACACCCTGCTGGTGTCA AGAATTGGTCAGTGTGGGAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20234065 20234065 T A 78 2 41 35 2 0 T/A 0.0256 2;0 40.0 0 39.5 1 60.0 4.000 0.0256 0 0 2.000 1 1.0 2 78 CAATAAGGCTCATCTCACTG GGCAGGCAGAGCTCACACAT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20168533 20168533 T TTAGTACTTTAACTTAAAAATATATTCCTCTCCTTACCCAGGTCCATTAATATAAGATTTGCCACTCTCTTGGATACTCCTGGTGTGGAAAATCTTGTCAGCACCCTCATGTTGAATAAAAGCATATTGGAGGACTTAGACCGTTACAACAAGGCTCGCAAAGACCCTGTAAGTACCTGTTGTGACCAGACCTCAGGATATGGGACCATTATGATGACCCATGTAGATTCAGCCCTGAAACTTCCTTGGATCTGAGTTGGAAAATCATATGGCAGGGGGCAG 89 3 41 34 1 2 T/+281 0.0337 2;2 41.0 1 40.8 1 60.0 6.000 0.0395 0.0337 70 3.000 1 0.3 3 76 CATTTGGGGGGAATACATAT TAGTACTTTAACTTAAAAAT 20:20156209-20234556 Insertion 0 3-2-2 -NA24385_chr_20_20156208_20234556 testbed 20 20168517 20168517 T TG 78 3 43 30 2 1 T/+1 0.0385 2;2 37.5 1 43.4 0 62.0 6.000 0.0405 0 6 7.000 1 1.0 3 74 ATTACAATTCTGTCTCCATT GGGGGGAATACATATTTAGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20168517 20168517 T TG 78 3 43 30 2 1 T/+1 0.0385 2;2 36.3 1 42.0 0 60.0 6.000 0.0405 0 6 7.000 1 1.0 3 74 ATTACAATTCTGTCTCCATT GGGGGGAATACATATTTAGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20234062 20234062 C T 74 2 36 36 2 0 C/T 0.0270 2;0 75.0 0 42.0 0 60.0 4.000 0.0274 0 0 1.000 1 1.5 2 73 TTTCAATAAGGCTCATCTCA TGTGGCAGGCAGAGCTCACA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20168608 20168608 A T 80 2 55 23 0 2 A/T 0.0250 2;0 38.0 0 42.0 0 60.0 4.000 0.0278 0 0 1.000 1 1.0 2 72 GATTTGCCACTCTCTTGGAT CTCCTGGTGTGGAAAATCTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20234228 20234228 C CATTCAGCACTCTTTTTGGGCCACTGACCCTGTGTCCAGTCCCACTGTTTGGCCTGGACGCACCTACCAACTCCACCTTTGTAACGTCAGAATGGTACACACTGTCTCTGTCAAGTGACATCTTTCAGATACTGGGTGGCTCTTGATATATGCATACCCTGACGGCCTGAGCAGTTTCACAGGTGTTCTTCAATGAACACGAAG 92 7 36 34 5 2 C/+203 0.0761 2;2 33.0 1 41.1 1 60.0 14.000 0.0933 0.0761 70 1.000 1 0.1 7 75 TTTTAAGCATGTGCAGCAAA ATTCAGCACTCTTTTTGGGC 20:20156209-20234556 Insertion 0 7-2-1 @@ -633,7 +633,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20234212 20234212 A T 67 2 35 30 0 2 NA24385_chr_20_20156208_20234556 testbed 20 20201451 20201452 CT C 75 2 41 31 2 0 T/-1 0.0267 2;0 64.0 0 42.0 0 60.0 4.000 0.0286 0 3 4.000 1 0 2 70 AGGAAGAATGCCTTCCATCA TTTGAATGTGTTTCCCGAAC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201450 20201450 A G 77 3 43 30 3 0 A/G 0.0390 2;0 9.7 1 25.0 1 60.0 2.000 0.0282 0.0260 1 1.000 1 2.3 2 71 TAGGAAGAATGCCTTCCATC CTTTTGAATGTGTTTCCCGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201408 20201409 AT A 61 2 35 24 1 1 T/-1 0.0328 2;2 50.0 1 42.0 0 60.0 4.000 0.0333 0 2 3.000 1 0 2 60 TTCTCTAAGAACTATCCATC TTCAGAAGGGTACTGTTTAA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20233788 20233788 A ATTTTCTTTTC 57 45 6 6 20 25 A/+10 0.7895 2;2 35.1 1 40.1 1 56.0 90.000 0.8036 0.2807 23 6.000 5 1.0 45 56 TGGGGAGCCTGAGATGCTAC TTTTCTTTTCTTTTCTTTTC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20233788 20233788 A ATTTTCTTTTC 57 45 6 6 20 25 A/+10 0.7895 2;2 31.2 1 35.6 1 49.8 90.000 0.8036 0.2807 23 6.000 5 1.0 45 56 TGGGGAGCCTGAGATGCTAC TTTTCTTTTCTTTTCTTTTC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201004 20201005 CT C 67 2 37 28 1 1 T/-1 0.0299 2;2 27.5 1 42.0 0 60.0 4.000 0.0317 0 3 4.000 1 0 2 63 GGCTATTTCTGAGCCCCACC TTTATAATGGCCAGTAATAC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20168210 20168210 T C 63 2 36 25 0 2 T/C 0.0317 2;0 14.0 0 39.5 1 60.0 4.000 0.0328 0 0 1.000 1 1.5 2 61 CTCCCTGGGTCCCACACTCA GAAGCCAGCCCTGGTGCAAT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20233809 20233809 T TTTTCTTTTC 56 2 22 32 2 0 T/+9 0.0357 2;0 71.0 0 40.1 1 60.0 4.000 0.0392 0 2 6.000 5 1.5 2 51 TTTTCTTTTCTTTTCTTTTC TTCCTTTTCTTCCTTCCTTC 20:20156209-20234556 Insertion 0 0 @@ -643,45 +643,45 @@ NA24385_chr_20_20156208_20234556 testbed 20 20168344 20168344 G T 72 2 27 43 0 2 NA24385_chr_20_20156208_20234556 testbed 20 20168347 20168348 TA T 67 3 26 38 3 0 A/-1 0.0448 2;0 20.0 0 42.0 0 60.0 6.000 0.0462 0 1 2.000 1 0 3 65 ATCTCTGTGTTGTCTTTGGT ATGGCATTATCAGTGATATT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201170 20201170 G A 99 2 40 56 2 0 G/A 0.0202 2;0 57.0 0 42.0 0 60.0 4.000 0.0211 0 0 5.000 1 1.0 2 95 GCGATTGGCATGTGAAGTGG GGTACAGGGAGCAGCCTTGT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20233939 20233939 G T 49 21 9 16 12 9 G/T 0.4286 2;2 32.4 1 41.2 1 60.0 42.000 0.4667 0.0408 0 2.000 1 2.6 21 45 TTTTAATTCCATTTATTGTT GATGAGTCTATTCCTGTGCC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20233939 20233939 G GGATGCCTCTTCTGGTTTAGGAACAATTTGTTCCTTTTCAATAAGGCTCATGTTT 49 3 9 16 1 2 G/+54 0.0612 2;2 47.6 1 37.2 1 61.2 6.000 0.0667 0.0612 4 3.000 1 0.7 3 45 TTTTAATTCCATTTATTGTT GATGAGTCTATTCCTGTGCC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20233939 20233939 G GGATGCCTCTTCTGGTTTAGGAACAATTTGTTCCTTTTCAATAAGGCTCATGTTT 49 3 9 16 1 2 G/+54 0.0612 2;2 46.7 1 36.5 1 60.0 6.000 0.0667 0.0612 4 3.000 1 0.7 3 45 TTTTAATTCCATTTATTGTT GATGAGTCTATTCCTGTGCC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20233949 20233949 A G 47 24 9 13 13 11 A/G 0.5106 2;2 35.0 1 38.8 1 60.0 23.000 0.5349 0.0213 1 2.000 1 2.4 23 43 ATTTATTGTTGGATGAGTCT TTCCTGTGCCGTAAGTTTCC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20168394 20168395 GT G 80 2 40 38 0 2 T/-1 0.0250 2;0 19.0 0 42.0 0 60.0 4.000 0.0263 0 2 3.000 1 4.0 2 76 TATTCTTCACACTTTTTTGT TTCAGGTTTTCTATAATGAA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20201167 20201167 T TG 97 2 39 53 0 2 T/+1 0.0206 2;0 17.5 1 43.1 1 61.6 4.000 0.0267 0.0103 5 6.000 1 0 2 75 CTTGCGATTGGCATGTGAAG GGGGGTACAGGGAGCAGCCT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20201167 20201167 T TG 97 2 39 53 0 2 T/+1 0.0206 2;0 17.0 1 42.0 1 60.0 4.000 0.0267 0.0103 5 6.000 1 0 2 75 CTTGCGATTGGCATGTGAAG GGGGGTACAGGGAGCAGCCT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201783 20201783 A C 85 4 35 46 3 1 A/C 0.0471 2;2 9.2 1 40.8 1 60.0 8.000 0.0482 0 0 1.000 1 2.8 4 83 AGCTAGCTGACACATGTCAG TAGGATTCGAGTAGAATGTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20168995 20168996 CT C 81 2 38 41 0 2 T/-1 0.0247 2;0 23.0 0 42.0 0 60.0 4.000 0.0270 0 2 3.000 1 0 2 74 AAAATGAGATGGATCCTAGT TTGGGATAGGTAGATACAGT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201772 20201772 A G 87 2 38 47 2 0 A/G 0.0230 2;0 11.0 0 39.5 1 60.0 4.000 0.0235 0 0 2.000 2 1.0 2 85 CCTGGAGTGCCAGCTAGCTG CACATGTCAGATAGGATTCG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201775 20201776 CA TG 82 2 36 44 1 1 CA/TG 0.0244 2;2 11.5 1 40.8 1 60.0 4.000 0.0250 0 0 2.000 2 3.0 2 80 GGAGTGCCAGCTAGCTGACA TGTCAGATAGGATTCGAGTA 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201768 20201768 G T 84 2 40 42 1 1 G/T 0.0238 2;2 11.5 1 37.0 0 60.0 4.000 0.0253 0 1 1.000 1 4.0 2 79 GATACCTGGAGTGCCAGCTA CTGACACATGTCAGATAGGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201845 20201845 A G 103 3 45 55 3 0 A/G 0.0291 2;0 7.0 0 42.0 0 60.0 6.000 0.0300 0 1 2.000 1 1.3 3 100 CTGAACACTTTACACTACTC AGGTGGCAAAGGAGAGACAT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20169062 20169062 G GGTGCCCACCTCAGCAGCACTGGGTACCAGATTGAGGGTAGTGGGACCCTGTTTGAGCCTATAAGATGATGAGTCTGACCAGACCCTTTTGTTGAGCTGGCTGCATCCCCCAGGATTACATGGGCTGGGAAAGATCCTGCATGATAAATGTTGGGTTCTCTTTCTAGTGTA 81 2 24 24 1 1 G/+170 0.0247 2;2 60.9 1 53.9 1 84.0 4.000 0.0417 0.0247 61 2.000 1 0 2 48 TTAGGAATCCATGGGTATCT GTGCCCACCTCAGCAGCACT 20:20156209-20234556 Insertion 0 2-1-1 +NA24385_chr_20_20156208_20234556 testbed 20 20169062 20169062 G GGTGCCCACCTCAGCAGCACTGGGTACCAGATTGAGGGTAGTGGGACCCTGTTTGAGCCTATAAGATGATGAGTCTGACCAGACCCTTTTGTTGAGCTGGCTGCATCCCCCAGGATTACATGGGCTGGGAAAGATCCTGCATGATAAATGTTGGGTTCTCTTTCTAGTGTA 81 2 24 24 1 1 G/+170 0.0247 2;2 43.5 1 38.5 1 60.0 4.000 0.0417 0.0247 61 2.000 1 0 2 48 TTAGGAATCCATGGGTATCT GTGCCCACCTCAGCAGCACT 20:20156209-20234556 Insertion 0 2-1-1 NA24385_chr_20_20156208_20234556 testbed 20 20201815 20201816 GA G 84 2 32 48 2 0 A/-1 0.0238 2;0 19.0 0 42.0 0 60.0 4.000 0.0267 0 0 4.000 1 0.5 2 75 TAGAATGTTGCAGAAACCCG GGCCATTTCTGAACACTTTA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20169185 20169456 G 78 2 30 33 0 2 G/ 0.0256 2;0 39.0 1 41.4 1 60.0 4.000 0.0328 0.0256 0 2.000 1 1.0 2 61 CATCCCCCAGGATTACATGG ACATGTTTTAAGAAACAGAC 20:20156209-20234556 INV 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20169184 20169184 G T 63 2 30 31 0 2 G/T 0.0317 2;0 6.0 0 42.0 0 60.0 4.000 0.0317 0 0 3.000 1 1.0 2 63 GCATCCCCCAGGATTACATG GCTGGGAAAGATCCTGCATG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201500 20201501 CA C 83 2 42 39 2 0 A/-1 0.0241 2;0 51.0 0 42.0 0 60.0 4.000 0.0260 0 0 2.000 1 2.0 2 77 CTCATGTCCTCATTTTATTC GTACAAGTAGTTCTTTCATG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201578 20201578 C G 84 84 0 0 48 36 G/G 1.0000 0;2 35.2 1 41.0 1 60.0 168.000 1.0000 0.0119 0 1.000 1 1.7 84 84 GTTAAGTAGTTTGTTAAAGA ATATATCTGTAAGGTAGTAC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20234415 20234416 CT C 96 3 49 44 2 1 T/-1 0.0312 2;2 45.3 1 42.0 0 49.3 6.000 0.0326 0 1 2.000 1 0 3 92 TGAGCAGTTTCACAGGTGTT TCAATGAACACGAAGATTTG 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20201649 20201649 A AT 96 3 54 37 0 3 A/+1 0.0312 2;0 16.4 0 43.1 0 61.6 6.000 0.0357 0 5 6.000 1 0 3 84 GGTAATTGGTTCTGTACATC TTTTTCTGCCATGGATTTAC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20201649 20201649 A AT 96 3 54 37 0 3 A/+1 0.0312 2;0 16.0 0 42.0 0 60.0 6.000 0.0357 0 5 6.000 1 0 3 84 GGTAATTGGTTCTGTACATC TTTTTCTGCCATGGATTTAC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20234401 20234402 GT G 112 2 55 55 2 0 T/-1 0.0179 2;0 67.0 0 42.0 0 60.0 4.000 0.0190 0 2 3.000 1 0.5 2 105 ATACCCTGACGGCCTGAGCA TTCACAGGTGTTCTTCAATG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201622 20201623 CA C 94 2 51 41 2 0 A/-1 0.0213 2;0 23.0 0 42.0 0 60.0 4.000 0.0233 0 1 2.000 1 0 2 86 TTATTACTTGTAGAACAATG AGTCAGGTAATTGGTTCTGT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20234385 20234385 C A 113 2 63 48 0 2 C/A 0.0177 2;0 22.0 0 42.0 0 60.0 4.000 0.0182 0 0 3.000 1 1.0 2 110 GGCTCTTGATATATGCATAC CTGACGGCCTGAGCAGTTTC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20234396 20234397 GA G 114 2 55 56 2 0 A/-1 0.0175 2;0 44.0 0 42.0 0 60.0 4.000 0.0187 0 0 2.000 1 2.5 2 107 TATGCATACCCTGACGGCCT GCAGTTTCACAGGTGTTCTT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20201630 20201783 GTAATTGGTTCTGTACATCATTTTTCTGCCATGGATTTACTTTATTCCTGCCTTTCCTTGTGTGTTCACCCCCAGAGAAGTCATTTCTCCAGTTTGTGGCTGACCCTGTATTGAGAATGATACCTGGAGTGCCAGCTAGCTGACACATGTCAGA G 93 2 50 42 2 0 T/-153 0.0215 2;0 221.0 1 40.3 1 60.0 4.000 0.0230 0.0215 2 2.000 1 1.0 2 87 TGTAGAACAATGCAAGTCAG TAGGATTCGAGTAGAATGTT 20:20156209-20234556 Deletion 0 2-1-1 NA24385_chr_20_20156208_20234556 testbed 20 20234369 20234369 C T 104 2 53 48 1 1 C/T 0.0192 2;2 40.0 0 42.0 0 60.0 4.000 0.0196 0 0 2.000 1 2.0 2 102 CTTTCAGATACTGGGTGGCT TTGATATATGCATACCCTGA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20201697 20201697 A AC 94 2 50 40 2 0 A/+1 0.0213 2;0 47.2 0 43.1 0 61.6 4.000 0.0244 0 5 6.000 1 0 2 82 CTGCCTTTCCTTGTGTGTTC CCCCCAGAGAAGTCATTTCT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20201697 20201697 A AC 94 2 50 40 2 0 A/+1 0.0213 2;0 46.0 0 42.0 0 60.0 4.000 0.0244 0 5 6.000 1 0 2 82 CTGCCTTTCCTTGTGTGTTC CCCCCAGAGAAGTCATTTCT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20168936 20168937 GA G 83 2 45 36 2 0 A/-1 0.0241 2;0 13.0 0 39.5 1 60.0 4.000 0.0250 0 1 2.000 1 0 2 80 ATACCCAAAATCCTTCTCAG AGATAGAAAATTTGGACTTG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20169522 20169522 T G 82 3 44 35 3 0 T/G 0.0366 2;0 11.0 0 42.0 0 60.0 6.000 0.0400 0 1 3.000 1 1.0 3 75 CTGATGCCTCTACTCAGGCC TTCCCTAAGTTAATACCACC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20169574 20169574 G GT 85 2 44 37 2 0 G/+1 0.0235 2;0 21.6 0 43.1 0 61.6 4.000 0.0241 0 5 6.000 1 1.0 2 83 ATCAGAGATTGGCTATGCCT TTTTTGAACTCTACATAAAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20169574 20169574 G GT 85 2 44 37 2 0 G/+1 0.0235 2;0 21.0 0 42.0 0 60.0 4.000 0.0241 0 5 6.000 1 1.0 2 83 ATCAGAGATTGGCTATGCCT TTTTTGAACTCTACATAAAT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20202412 20202412 A G 97 3 55 38 1 2 A/G 0.0309 2;2 24.0 0 31.7 1 60.0 2.000 0.0233 0 1 1.000 1 3.0 2 86 TTGCAAGAAAACATGGAATT CATCCATTCCTCCAATGACT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20169725 20169725 G A 91 4 59 27 2 2 G/A 0.0440 2;2 17.0 1 31.8 1 41.5 3.000 0.0366 0 0 1.000 1 2.2 3 82 TATTTCTTCATTCTACTGTT AGGTCTTTCAGGGAGTTCCA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20169702 20169702 A ATTTATTTCTTCATTCTACTGTTGAGGTCTTTCAGGGAGTTCCAGTTATTTGCTCTTTTGGAAAAAAACCTTTTAGTTAATTTTTAAGTCATCAGGAGGGAGACGCCAAACACCTAAACATAATGTCATATACACAAATGTTTACTATTTATAAAGGCATCAGAGTAAATTGAAATAAAACTTCCCTTCAGCACATGGTTTGCTTTGGTTTGTCTTGCACTCTTTTAGTTCTTCATTTTTTGCTCCTTCCCTCCTGGCCCTCTAAGTGGTATGAGGTCAAGTCCTGGTTCTCAAAGTATGGTCTAAGGAACCTTGGGGGTCTCTGAAACATGAATTTTCTGGGAGTCTGCAAGGTAAAAACTGTTTTATTCCTTTTCCACTGTGTTGAGATCTGTACTTACGACGCATAAGTACATATGTACTTATGATCTGTACTTATGTACTTATGGCATTGGGTGAAACCAATGCCACC 99 2 53 31 2 0 A/+471 0.0202 2;0 34.0 1 38.5 1 27.0 4.000 0.0241 0.0202 70 2.000 1 2.0 2 83 CATGGCATGAATATACCACC TTTATTTCTTCATTCTACTG 20:20156209-20234556 Insertion 0 2-1-1 NA24385_chr_20_20156208_20234556 testbed 20 20169675 20169675 G A 88 87 0 0 53 34 A/A 0.9886 0;2 36.2 1 39.7 1 60.0 20.750 1.0000 0.0114 1 2.000 1 1.7 83 83 TCATCCATATTATAGCATGA GTATTTCATGGCATGAATAT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20202026 20202026 T TG 109 2 52 53 1 1 T/+1 0.0183 2;2 42.6 1 43.1 0 61.6 4.000 0.0200 0 5 6.000 1 0 2 100 GATCATATGAGCTACTTGTT GGGGGCTATTATTTAATTGG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20202026 20202026 T TG 109 2 52 53 1 1 T/+1 0.0183 2;2 41.5 1 42.0 0 60.0 4.000 0.0200 0 5 6.000 1 0 2 100 GATCATATGAGCTACTTGTT GGGGGCTATTATTTAATTGG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20169328 20169330 ATG TA 82 3 32 47 2 1 ATG/-1TA 0.0366 2;2 14.3 1 37.4 1 60.0 6.000 0.0395 0.0122 0 2.000 2 0.3 3 76 GACAGTTAATCTGACTACAC GAAAGATGAAAGAATATTGT 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20202074 20202074 T TCAAATCTAAGTTGCTATCAATTATAAGATGTACCTTTATTTTATGTACTATTAAGAAAAAAAATGCAGCCAATTAAATTGTAACACAACGTCTAAATGAGAGTCCTGAACAGCATGTGAATCAGTCATATAAGTCTTAGTGCTTTGAAATTTCTTTCATCTATTCAGAGAGGGGAGGCAATTTACGTGCCCTTCAATTGCATTATTTGCTGGGTGATGTGGAAAAATTTTTTTGCATGTGTCTCAGTAACAAAATGTAACACAGCTTCATCTCCTTGTCATCTTTTATTTGCTCCTGAAAGGCACTCAATCGTTGCATTGCAAGAAAACATGGAATTACATCCATTCCTCCAATGACTAATATTTGCTTCACTAATATCAAATTTGCACCTTGCTGCTCAGTTTCTGGGCCTTTATGGGAACACAACAATAAGCATTCATTTCAATGCCAAATCATGCTGTAATCTTTTTGAAGACATTGTCAGAAGCACTTAAACTCAACACATATTGTGCGTATAATGCACATGACTC 116 2 45 57 0 2 T/+530 0.0172 2;0 55.0 1 38.4 1 60.0 4.000 0.0204 0.0172 70 2.000 1 0 2 98 TGAATTAACCACCTAATTCA CAAATCTAAGTTGCTATCAA 20:20156209-20234556 Insertion 0 2-8-2 -NA24385_chr_20_20156208_20234556 testbed 20 20202129 20202129 G GA 101 8 41 49 3 5 G/+1 0.0792 2;2 35.7 1 42.0 1 62.8 16.000 0.0889 0 8 9.000 1 0.5 8 90 TTTATTTTATGTACTATTAA AAAAAAAATGCAGCCAATTA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20202129 20202129 G GA 101 8 41 49 3 5 G/+1 0.0792 2;2 34.1 1 40.1 1 60.0 16.000 0.0889 0 8 9.000 1 0.5 8 90 TTTATTTTATGTACTATTAA AAAAAAAATGCAGCCAATTA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20202129 20202131 GAA G 101 2 43 56 2 0 A/-2 0.0198 2;0 31.0 0 42.0 0 60.0 4.000 0.0208 0 6 8.000 1 1.5 2 96 TTTATTTTATGTACTATTAA AAAAAATGCAGCCAATTAAA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20202112 20202112 A T 102 3 47 51 0 3 A/T 0.0294 2;0 43.0 0 42.0 0 60.0 6.000 0.0312 0 0 4.000 1 1.7 3 96 CAATTATAAGATGTACCTTT TTTTATGTACTATTAAGAAA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20202208 20202208 T TCTTAGTGCTGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCACAATGATCTCGTATGCCGTCTTCTGCTTGAAAAAAA 79 3 29 44 3 0 T/+81 0.0380 2;0 80.8 1 41.9 1 63.2 6.000 0.0448 0.0380 9 7.000 1 0.4 3 67 ATGTGAATCAGTCATATAAG CTTAGTGCTTTGAAATTTCT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20202208 20202208 T TCTTAGTGCTGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCACAATGATCTCGTATGCCGTCTTCTGCTTGAAAAAAA 79 3 29 44 3 0 T/+81 0.0380 2;0 76.7 1 39.8 1 60.0 6.000 0.0448 0.0380 9 7.000 1 0.4 3 67 ATGTGAATCAGTCATATAAG CTTAGTGCTTTGAAATTTCT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20170033 20170033 G A 97 2 41 53 0 2 G/A 0.0206 2;0 51.0 0 32.0 1 60.0 4.000 0.0227 0 0 2.000 1 1.5 2 88 CTTGGGGGTCTCTGAAACAT AATTTTCTGGGAGTCTGCAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20202802 20202802 A T 103 4 51 48 2 2 A/T 0.0388 2;2 26.0 1 34.5 1 60.0 3.000 0.0300 0 0 3.000 1 2.0 3 100 ATCCCTCAACTTAGCTTCCA ATCATTTTTCTAATATAAAT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20202875 20202876 TA T 112 2 47 63 2 0 A/-1 0.0179 2;0 58.0 0 42.0 0 60.0 4.000 0.0183 0 4 5.000 1 0 2 109 GTGGCAATAATTTTAGCTTT AAAACATGCAAAATAATGAT 20:20156209-20234556 Deletion 0 0 @@ -695,8 +695,8 @@ NA24385_chr_20_20156208_20234556 testbed 20 20169748 20169748 T A 93 2 58 32 2 0 NA24385_chr_20_20156208_20234556 testbed 20 20169841 20169842 GT G 114 2 48 64 1 1 T/-1 0.0175 2;2 61.5 1 42.0 0 60.0 4.000 0.0189 0 2 3.000 1 2.0 2 106 ATAATGTCATATACACAAAT TTACTATTTATAAAGGCATC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20169899 20169899 G GTT 107 41 35 30 20 21 G/+2 0.3832 2;2 40.9 1 38.9 1 58.6 19.500 0.3900 0.0280 3 5.000 1 0.2 39 100 AAACTTCCCTTCAGCACATG TTTGCTTTGGTTTGTCTTGC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20169873 20169874 GA G 120 2 59 59 0 2 A/-1 0.0167 2;0 23.0 0 42.0 0 53.0 4.000 0.0174 0 2 3.000 1 0 2 115 TAAAGGCATCAGAGTAAATT AATAAAACTTCCCTTCAGCA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20202742 20202742 T TA 112 4 44 61 3 1 T/+1 0.0357 2;2 20.3 1 39.8 1 62.4 8.000 0.0381 0 7 8.000 1 1.0 4 105 TGATTTCAGGAATACCAGCT AAAAAAATGTGCACACTAGA 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20169936 20169936 A AT 103 2 50 48 1 1 A/+1 0.0194 2;2 31.0 1 38.2 1 62.0 4.000 0.0230 0 6 7.000 1 1.6 2 87 TTGCACTCTTTTAGTTCTTC TTTTTTGCTCCTTCCCTCCT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20202742 20202742 T TA 112 4 44 61 3 1 T/+1 0.0357 2;2 19.5 1 38.2 1 60.0 8.000 0.0381 0 7 8.000 1 1.0 4 105 TGATTTCAGGAATACCAGCT AAAAAAATGTGCACACTAGA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20169936 20169936 A AT 103 2 50 48 1 1 A/+1 0.0194 2;2 30.0 1 37.0 1 60.0 4.000 0.0230 0 6 7.000 1 1.6 2 87 TTGCACTCTTTTAGTTCTTC TTTTTTGCTCCTTCCCTCCT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20202689 20202689 C G 114 2 46 66 2 0 C/G 0.0175 2;0 57.0 0 42.0 0 60.0 4.000 0.0180 0 0 1.000 1 1.5 2 111 CACTGCTACTGCCTGGCTGA TGCTACTGTTGAAATGCTGT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20170520 20170520 C T 87 2 47 38 2 0 C/T 0.0230 2;0 50.0 0 42.0 0 18.0 4.000 0.0238 0 0 2.000 1 1.5 2 84 GCGACCTTGGCTCACTGCAA CTCCGCCTCCCGGGTTCAAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20203343 20203344 AT A 57 2 29 25 2 0 T/-1 0.0351 2;0 45.5 1 34.5 1 60.0 4.000 0.0377 0 3 4.000 1 1.5 2 53 AGAAAGGCTTTTTGAATTGC TTTATGCCTGTGGAAGAGAT 20:20156209-20234556 Deletion 0 0 @@ -704,13 +704,13 @@ NA24385_chr_20_20156208_20234556 testbed 20 20170563 20170563 T C 85 2 38 44 1 1 NA24385_chr_20_20156208_20234556 testbed 20 20170631 20170632 AT A 98 3 42 53 3 0 T/-1 0.0306 2;0 12.3 1 42.0 1 60.0 6.000 0.0316 0.0204 1 2.000 1 2.3 3 95 TAGAGATGGGGTTTCACCAT TGGCCAGGCTGGTCTCGAAC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20203511 20203511 G A 52 2 26 24 0 2 G/A 0.0385 2;0 60.0 0 42.0 0 60.0 4.000 0.0392 0 1 4.000 1 1.0 2 51 ATTTGTTTTGCTCAAATTGG AAAACGAGAGTTTCTCAAGG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20170690 20170690 A AAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCAGCATTGACTGTTTATTTAAAAACTAAAACTGCAACTATCTTATGGCCTAACATTTGCACTTGTGGGCATTTGATCCAGAGAAATGAAGAGTTTACACTAATGTTCATAGCAGCTATTGTCAGCAAAGATATCCTTCAACAGATGAATGGTTAAACACACTGTGGCACATCATGTC 127 2 53 35 0 2 A/+210 0.0157 2;0 37.0 1 41.9 1 60.0 4.000 0.0238 0.0157 70 3.000 1 0 2 84 CTGCCTGCCTCAGCCTCTCA AGTGCTGGGATTACAGGCGT 20:20156209-20234556 Insertion 0 2-2-1 -NA24385_chr_20_20156208_20234556 testbed 20 20203069 20203069 G GA 103 2 51 48 1 1 G/+1 0.0194 2;2 35.6 1 40.8 1 62.0 4.000 0.0206 0 6 7.000 1 0.5 2 97 TATGCTCTATCCAGTGTTAA AAAAAAGCCAGTGTCCTAGA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20203069 20203069 G GA 103 2 51 48 1 1 G/+1 0.0194 2;2 34.5 1 39.5 1 60.0 4.000 0.0206 0 6 7.000 1 0.5 2 97 TATGCTCTATCCAGTGTTAA AAAAAAGCCAGTGTCCTAGA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20203020 20203021 CT C 88 3 48 37 2 1 T/-1 0.0341 2;2 17.3 1 42.0 0 60.0 6.000 0.0380 0 0 2.000 1 1.7 3 79 ATAGAGGCTACCATGGCCCA CTTTGACCCCTGCTACATGA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20170367 20170367 T TGCTGGTGGGAAAGTAGAATGGTGTGGCCACTCTGGAAAATATTTTGGCTGTTTATTTTTTTATTTTTATTTATTTATTTGTTTATTTTGAGACAGAGTCTCACTCTTGTTGCCCAGGCTGGAGTGCGATGGCGCGACCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGGGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACACGTGCCTGCCTGTAATTTTTGAATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAG 87 2 34 43 0 2 T/+297 0.0230 2;0 62.0 1 36.8 1 60.0 4.000 0.0267 0.0230 70 2.000 1 0.5 2 75 GGAAACTGGATCTCTAGTGT GCTGGTGGGAAAGTAGAATG 20:20156209-20234556 Insertion 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20170336 20171094 CAAGGATGTGGGGAAACTGGATCTCTAGTGTTGCTGGTGGGAAAGTAGAATGGTGTGGCCACTCTGGAAAATATTTTGGCTGTTTATTTTTTTATTTTTATTTATTTATTTGTTTATTTTGAGACAGAGTCTCACTCTTGTTGCCCAGGCTGGAGTGCGATGGCGCGACCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGGGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACACGTGCCTGCCTGTAATTTTTGAATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAGGTGATCTGCCTGCCTCAGCCTCTCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCAGCATTGACTGTTTATTTAAAAACTAAAACTGCAACTATCTTATGGCCTAACATTTGCACTTGTGGGCATTTGATCCAGAGAAATGAAGAGTTTACACTAATGTTCATAGCAGCTATTGTCAGCAAAGATATCCTTCAACAGATGAATGGTTAAACACACTGTGGCACATCATGTCATGGAATACTACTCAGCAGTGAAAGGAATGAACTCTTGATACATGCCTTGGCTTGGATAAATCTCCAGAGTATTATACTGAGTGGGGAAAAAAGCCAACCCCTACAGGTTGTATCCTCTAGCGTTCCATTTGTATGATACTTTGAAGTGACAAGATTTTAGAAATGGAGAACAGGTTATCTGATGCCAGAGGTT C 69 2 28 41 0 2 A/-758 0.0290 2;0 26.0 1 31.5 1 60.0 4.000 0.0312 0.0290 7 2.000 1 1.0 2 64 CACTAGCCGCTAAATGCTGG AAGGATGCGGGGAGGGTGGG 20:20156209-20234556 Deletion 0 2-3-1 NA24385_chr_20_20156208_20234556 testbed 20 20203097 20203097 T TTACCCTCAGTGGATACCACAGACACAACAGTTTACACTTTTTCCGAAGTGCTGGAGCTACCAAATTGTTCTGAGCTTCCCAGTACCCCCAACCGAGAGGAAAGTTAAGTGAATCCTTCATAAAGCAAGTCTCAAA 98 2 49 49 2 0 T/+135 0.0204 2;0 43.0 1 39.6 1 60.0 4.000 0.0211 0.0204 70 3.000 1 0 2 95 CCAGTGTCCTAGAATCACCG TACCCTCAGTGGATACCACA 20:20156209-20234556 Insertion 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20170429 20170430 AT A 79 2 40 36 0 2 T/-1 0.0253 2;0 28.0 0 42.0 0 60.0 4.000 0.0278 0 4 5.000 1 0 2 72 TTTTGGCTGTTTATTTTTTT TTTTATTTATTTATTTGTTT 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20203181 20203181 A AC 80 3 28 48 0 3 A/+1 0.0375 2;0 61.6 0 43.1 0 61.6 6.000 0.0405 0 5 6.000 1 0.7 3 74 ATTGTTCTGAGCTTCCCAGT CCCCCAACCGAGAGGAAAGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20203181 20203181 A AC 80 3 28 48 0 3 A/+1 0.0375 2;0 60.0 0 42.0 0 60.0 6.000 0.0405 0 5 6.000 1 0.7 3 74 ATTGTTCTGAGCTTCCCAGT CCCCCAACCGAGAGGAAAGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20203141 20203141 C T 85 3 34 48 3 0 C/T 0.0353 2;0 12.0 1 31.7 1 60.0 2.000 0.0241 0 0 1.000 1 2.3 2 83 ACAACAGTTTACACTTTTTC GAAGTGCTGGAGCTACCAAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20203207 20203208 GA G 57 6 19 32 3 3 A/-1 0.1053 2;2 33.5 1 40.3 1 60.0 12.000 0.1091 0 1 2.000 1 0.5 6 55 AACCGAGAGGAAAGTTAAGT ATCCTTCATAAAGCAAGTCT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20203814 20203814 T A 111 2 51 57 2 0 T/A 0.0180 2;0 10.0 0 42.0 0 60.0 4.000 0.0194 0 0 4.000 1 1.0 2 103 TGGGAGAGAGGATCTGCAAT TTACCTTGTGTAACATCTTT 20:20156209-20234556 SNV 0 0 @@ -728,14 +728,14 @@ NA24385_chr_20_20156208_20234556 testbed 20 20170773 20170774 TA T 80 2 44 34 2 NA24385_chr_20_20156208_20234556 testbed 20 20203687 20203687 T C 81 3 41 37 1 2 T/C 0.0370 2;2 29.7 1 23.3 1 60.0 2.000 0.0256 0 0 3.000 1 2.0 2 78 CTTTGAAGTGTTTGGAAGCT TCTGTAAGAAAAGATATATA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20203658 20203658 C A 74 2 41 30 2 0 C/A 0.0270 2;0 6.0 0 42.0 0 60.0 4.000 0.0290 0 0 1.000 1 1.5 2 69 CTTTCATTTCCTTGTATGGA AGAGCTCCCTTTGAAGTGTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20203750 20203750 C A 95 2 48 45 2 0 C/A 0.0211 2;0 10.0 0 42.0 0 60.0 4.000 0.0225 0 1 4.000 1 1.0 2 89 ATTGAGCTCATTGTTTTGCC TTTTCAAACGTGTTTTTCAA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20170987 20170987 G GA 109 5 59 42 1 4 G/+1 0.0459 2;2 29.8 1 43.4 1 62.0 10.000 0.0485 0.0092 6 7.000 1 0.6 5 103 AGAGTATTATACTGAGTGGG AAAAAAGCCAACCCCTACAG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20170987 20170987 G GA 109 5 59 42 1 4 G/+1 0.0459 2;2 28.8 1 42.0 1 60.0 10.000 0.0485 0.0092 6 7.000 1 0.6 5 103 AGAGTATTATACTGAGTGGG AAAAAAGCCAACCCCTACAG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20170957 20170957 A ATAAATCTCCAGAGTATTATACTGAGTGGGGAAAAAAGCCAACCCCTACAGGTTGTATCCTCTAGCGTTCCATTTGTATGATACTTTGAAGTGACAAGATTTTAGAAATGGAGAACAGGTTATCTGATGCCAGAGGTTAAGGATGCGGGGAGGGTGGGGACAGAGGGGGCAACTCAAGGGATGTTGTGGTATTAGAACTGTTCAATATTCTGACTATAGTGGTGGATACATAAACCTATAGAGGTGATGAAATCATGTGAAACTTCATACACCACACACACACACACCCCCACAATTGTATCAATGTTGGTTTCCTGCTTGTAGTATTAGACTATGGTTTTGCAAAATGTTATTATTAAGGGATACTGAACAAAGTGTACAAGAAATTTCTGTTTTATTTCTTACACTGCATGTAAATCTACAAGTATGTCAATTAAAGAGAAAGAAAAGGAAAAGCCAGTTTCACTAAGGAATATCCTTGATGAAGCAGTAAAATTATTAAGTTTATTAAGTCTCAACCCTGAGGCCAGGTATGGTGGCTCACGCGTGCAATCCTAGCACTCTGGGAGCCCAAGGCAGGTGGATTCCTTGAGGCCAGGAGTTCAAGACCATCCTGGGCAACATGGTGTAACCTCATCTCTACTAAAAATACAAAAATTAGCTGAGCATGATGGGGCACGCCTGTAGTCCCAGTTGCTTGGGAGGC 116 2 64 52 0 2 A/+705 0.0172 2;0 62.0 1 40.4 1 60.0 4.000 0.0179 0.0172 70 1.000 1 0 2 112 TGATACATGCCTTGGCTTGG TAAATCTCCAGAGTATTATA 20:20156209-20234556 Insertion 0 2-2-1 -NA24385_chr_20_20156208_20234556 testbed 20 20171552 20171552 C CAGGATGGTCTTGAACTCCTGGCCTCA 91 5 44 42 2 3 C/+26 0.0549 2;2 20.4 1 41.2 1 61.2 10.000 0.0588 0.0549 4 2.000 1 0.6 5 85 GCAGGTGGATTCCTTGAGGC AGGAGTTCAAGACCATCCTG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20171552 20171552 C CAGGATGGTCTTGAACTCCTGGCCTCA 91 5 44 42 2 3 C/+26 0.0549 2;2 20.0 1 40.4 1 60.0 10.000 0.0588 0.0549 4 2.000 1 0.6 5 85 GCAGGTGGATTCCTTGAGGC AGGAGTTCAAGACCATCCTG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20171550 20171550 G C 90 3 44 43 0 3 G/C 0.0333 2;0 7.0 0 42.0 0 60.0 6.000 0.0353 0 0 2.000 1 1.0 3 85 AGGCAGGTGGATTCCTTGAG CCAGGAGTTCAAGACCATCC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20204362 20204362 T TGACCAATTTTTTTCTATACACACAAAACAGTTAACAAATGTGCCTAAAACTCAAAACTGTGTATTTCAGTTCTCTTGACAAATGTATCTGAATCATGACATAAACTCAACTGAGTGTGCACATCAACATCATCTTTACTAAAAAGATCAAATTTAATCCTAAGTAGTTATAATTACATCCAGATTATTCATTTGGCCATTTAAGCAAATGGAAATGAACCAACTAAAATAATTTGCAATACAGAAATTATGTCAACACC 97 2 38 45 0 2 T/+259 0.0206 2;0 28.8 1 48.2 1 69.2 4.000 0.0263 0.0206 24 4.000 1 0.6 2 76 TATCCAATGAAATTATATTT GACCAATTTTTTTCTATACA 20:20156209-20234556 Insertion 0 2-0-0 +NA24385_chr_20_20156208_20234556 testbed 20 20204362 20204362 T TGACCAATTTTTTTCTATACACACAAAACAGTTAACAAATGTGCCTAAAACTCAAAACTGTGTATTTCAGTTCTCTTGACAAATGTATCTGAATCATGACATAAACTCAACTGAGTGTGCACATCAACATCATCTTTACTAAAAAGATCAAATTTAATCCTAAGTAGTTATAATTACATCCAGATTATTCATTTGGCCATTTAAGCAAATGGAAATGAACCAACTAAAATAATTTGCAATACAGAAATTATGTCAACACC 97 2 38 45 0 2 T/+259 0.0206 2;0 25.0 1 41.8 1 60.0 4.000 0.0263 0.0206 24 4.000 1 0.6 2 76 TATCCAATGAAATTATATTT GACCAATTTTTTTCTATACA 20:20156209-20234556 Insertion 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20204461 20204461 C T 103 3 30 69 3 0 C/T 0.0291 2;0 12.0 0 42.0 0 59.7 6.000 0.0297 0 0 1.000 1 1.7 3 101 CAAATGTATCTGAATCATGA ATAAACTCAACTGAGTGTGC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20204424 20204424 T A 100 2 36 62 0 2 T/A 0.0200 2;0 68.0 0 37.0 0 60.0 4.000 0.0217 0 1 1.000 1 4.0 2 92 GCCTAAAACTCAAAACTGTG ATTTCAGTTCTCTTGACAAA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20171757 20171757 C CA 52 5 15 31 2 3 C/+1 0.0962 2;2 27.2 1 41.9 1 62.8 10.000 0.1042 0 8 9.000 1 0 5 48 ACAAGAGCAAAACTCCATCT AAAAAAAATAATAATAATAA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20171757 20171757 C CA 52 5 15 31 2 3 C/+1 0.0962 2;2 26.0 1 40.0 1 60.0 10.000 0.1042 0 8 9.000 1 0 5 48 ACAAGAGCAAAACTCCATCT AAAAAAAATAATAATAATAA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20204482 20204482 A T 95 3 34 58 0 3 A/T 0.0316 2;0 24.0 0 38.7 1 60.0 6.000 0.0330 0 0 1.000 1 1.0 3 91 ATAAACTCAACTGAGTGTGC CATCAACATCATCTTTACTA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20171310 20171310 T A 85 3 34 48 0 3 T/A 0.0353 2;0 5.0 0 28.7 1 60.0 6.000 0.0361 0 0 3.000 3 1.7 3 83 ATGGTTTTGCAAAATGTTAT ATTAAGGGATACTGAACAAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20171308 20171308 A ATTATTAAGGGATACTGAACAAAGTGTACAAGAAATTTCTGTTTTATTTCTTACACTGCATGTAAATCTACAAGTATGTCAATTAAAGAGAAAGAAAAGGAAAAGCCAGTTTCACTAAGGAATATCCTTGATGAAGCAGTAAAATTATTAAGTTTATTAAGTCTCAACCCTGAGGCCAGGTATGGTGGCTCACGCGTGCAATCCTAGCACTCTGGGAGCCCAAGGCAGGTGGATTCCTTGAGGCCAGGAGTTCAAGACCATCCTGGGCAACATGGTGTAACCTCATCTCTACTAAAAATACAAAAATTAGCTGAGCATGATGGGGCACGCC 82 2 32 50 2 0 A/+330 0.0244 2;0 24.0 1 41.5 1 60.0 4.000 0.0263 0.0244 70 3.000 3 0 2 76 CTATGGTTTTGCAAAATGTT TTATTAAGGGATACTGAACA 20:20156209-20234556 Insertion 0 2-4-2 @@ -743,14 +743,14 @@ NA24385_chr_20_20156208_20234556 testbed 20 20204152 20204164 ATGTAGGATCATT A 10 NA24385_chr_20_20156208_20234556 testbed 20 20171357 20171358 CT C 81 4 38 38 1 3 T/-1 0.0494 2;2 15.5 1 36.2 1 60.0 3.000 0.0417 0.0123 1 2.000 1 1.0 3 72 AAGAAATTTCTGTTTTATTT TACACTGCATGTAAATCTAC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20204214 20204214 G A 131 62 46 23 33 29 G/A 0.4733 2;2 30.5 1 37.3 1 59.4 9.333 0.4516 0.0382 0 1.000 1 1.5 56 124 TCAGCCTATTTATTGTTTTA TAACTCCCGATTTTGAATCT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20204165 20204165 T A 106 2 66 38 0 2 T/A 0.0189 2;0 9.0 0 42.0 0 60.0 4.000 0.0196 0 1 1.000 1 2.0 2 102 ATGTATTATGTAGGATCATT GTATTTATTTTTATTGCTCT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20204172 20204172 A AT 107 2 63 40 0 2 A/+1 0.0187 2;0 46.2 1 43.1 0 61.6 4.000 0.0198 0 5 6.000 1 0.5 2 101 ATGTAGGATCATTTGTATTT TTTTTATTGCTCTCTAGTGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20204172 20204172 A AT 107 2 63 40 0 2 A/+1 0.0187 2;0 45.0 1 42.0 0 60.0 4.000 0.0198 0 5 6.000 1 0.5 2 101 ATGTAGGATCATTTGTATTT TTTTTATTGCTCTCTAGTGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20204271 20204271 C T 135 2 70 62 1 1 C/T 0.0148 2;2 14.5 1 38.2 1 60.0 4.000 0.0157 0.0074 0 1.000 1 1.0 2 127 TTCAGTAATGCTTTTGTAGT ATTCTAATTCATTCTAAGTG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20204877 20204877 T TCATAGGGAATTATAGGTAAAGAGGTTAAAACATTAACATTTGCTCATTTCTCTTCCCTATTTTCTCATCTCAGCCGGTCTCCCCTCCCATCTGACCTCCGAATCTTCCACATTCCTCCCCGCCCCGCAACCCCCAAGCTCAACTCTAGAATTTCCTAACAGGAGTATCAAATACTATCATTCCTTCCTTTCCTACCTAAGCAATGGAATCTATGGTTTGTATTTTAAAGTCATTATGAGAGTTGACATCAACTTTAAGGAATTTTTTTTTAGCCTTAAAAGGTTAGCTTATACA 72 3 25 34 0 3 T/+294 0.0417 2;0 37.0 1 41.3 1 60.0 6.000 0.0508 0.0417 70 2.000 2 1.0 3 59 TACAGTCTTATTTCAGAAGC CATAGGGAATTATAGGTAAA 20:20156209-20234556 Insertion 0 3-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20172219 20172219 A T 85 2 47 35 2 0 A/T 0.0235 2;0 31.0 0 42.0 0 60.0 4.000 0.0247 0 0 2.000 1 1.0 2 81 ATCTGCCTCTATCCCACTTG AGGACTTGCAATTCTCCATT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20204931 20204931 T C 76 2 37 37 0 2 T/C 0.0263 2;0 44.0 1 25.9 1 60.0 4.000 0.0290 0.0132 0 3.000 1 2.5 2 69 TAACATTTGCTCATTTCTCT CCCTATTTTCTCATCTCAGC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20205036 20205036 C CAGGAGTATTTGATACTCCTGTT 73 3 33 35 1 2 C/+22 0.0411 2;2 15.0 1 40.8 1 62.8 6.000 0.0455 0.0411 8 2.000 1 1.0 3 66 TCAACTCTAGAATTTCCTAA AGGAGTATCAAATACTATCA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20205036 20205036 C CAGGAGTATTTGATACTCCTGTT 73 3 33 35 1 2 C/+22 0.0411 2;2 14.3 1 39.0 1 60.0 6.000 0.0455 0.0411 8 2.000 1 1.0 3 66 TCAACTCTAGAATTTCCTAA AGGAGTATCAAATACTATCA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20204992 20204993 CT C 79 2 35 41 1 1 T/-1 0.0253 2;2 34.0 1 42.0 0 60.0 4.000 0.0286 0 0 6.000 1 1.5 2 70 CCTCCGAATCTTCCACATTC CCCCGCCCCGCAACCCCCAA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20172237 20172237 A AT 85 7 39 36 4 3 A/+1 0.0824 2;2 34.8 1 37.4 1 62.4 6.000 0.0800 0.0235 7 8.000 1 0 6 75 TGAAGGACTTGCAATTCTCC TTTTTTTGCAGTTCAGAATA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20172237 20172237 A AT 85 7 39 36 4 3 A/+1 0.0824 2;2 33.4 1 36.0 1 60.0 6.000 0.0800 0.0235 7 8.000 1 0 6 75 TGAAGGACTTGCAATTCTCC TTTTTTTGCAGTTCAGAATA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20172635 20172635 C T 93 2 55 36 1 1 C/T 0.0215 2;2 33.5 1 42.0 0 60.0 4.000 0.0220 0 2 1.000 1 1.0 2 91 TTATCTGTTGATACCTATTG ATTATCATGTGCTTTTATAT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20205384 20205384 C G 73 3 37 33 0 3 C/G 0.0411 2;0 7.0 0 42.0 0 60.0 6.000 0.0469 0 1 2.000 1 2.0 3 64 TCTAAAATGCTAACCTAATG CATTAGAAAAATAGAAATGT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20205465 20205465 G GTAGGTAAATAGCTTACAATTCGCCCTGTTTAATCTTTGAAATAATTTTCCATTATGAGGATCATTTAATTCTGTCTATAAAATGTGAGTCAAGAACTAGGGCTTTTATTTTTACTTTCTATGAAGGAAATAAGACCCAAAACAGAATCTCCAATGCATGGGACATTTTTTGGCAGATGTTCAGAGGGAGAAAAGGAAAAGCTGGCTTGACTCA 97 2 51 46 1 1 G/+213 0.0206 2;2 34.5 1 40.5 1 32.0 4.000 0.0213 0.0206 70 2.000 1 0 2 94 TATTATTCTTGGTATGGTAG TAGGTAAATAGCTTACAATT 20:20156209-20234556 Insertion 0 2-0-0 @@ -759,11 +759,11 @@ NA24385_chr_20_20156208_20234556 testbed 20 20172797 20172798 AT A 118 3 56 59 0 NA24385_chr_20_20156208_20234556 testbed 20 20172769 20172769 G A 123 3 60 60 0 3 G/A 0.0244 2;0 6.0 1 30.0 1 60.0 2.000 0.0175 0.0163 0 1.000 1 2.7 2 114 ATTAATATAATTGTACCTAC TGGATTCTATAGAACAATTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20205509 20205510 AT A 90 3 45 41 0 3 T/-1 0.0333 2;0 55.0 0 42.0 0 60.0 6.000 0.0366 0 3 4.000 1 0 3 82 CCTGTTTAATCTTTGAAATA TTTCCATTATGAGGATCATT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20172301 20172301 A AAACTCAGATAGCTTTCCACCACCTATACATATATTAATATATTCCATATATTAATATGTTCTAAGTATTACTACTGTAGTGATGCATTTATACCTTCCAGCATTCTTCTTTGCACTTTATTACATATATCGTGTGTGTGTGTGTGTCAAATGGAAATGCCATTTTATTTTTTCCCAGTGCACAGCCAGCTATTTCAAAGCATTTATTACTGAATAATCCATTCGTTCCCTTTTGATTTTAAAATGCTGCTTTTACATTTATTAAGTTTCTATATGCCTATGTCTATTTTTAAACTCTGTTCTGTTCCGTGGATTTATCTGTTGATACCTATTGCATTATCATGTGCTTTTATATCTAATAGGGGAGTGTTCTCTCATTTGGTGTCTTCTAAATTTTCTTGTTTTTTGTTCTTGGTTATTTCCTCTCCCAAACCTTGTAATATTT 128 2 48 51 1 1 A/+444 0.0156 2;2 56.0 1 41.0 1 60.0 4.000 0.0247 0.0156 70 5.000 1 0 2 81 TGAAAACATTCTCACCCTAA AACTCAGATAGCTTTCCACC 20:20156209-20234556 Insertion 0 2-2-1 -NA24385_chr_20_20156208_20234556 testbed 20 20205138 20205138 A AT 73 2 39 29 1 1 A/+1 0.0274 2;2 56.4 1 39.0 1 63.2 4.000 0.0312 0 9 10.000 1 1.6 2 64 GTTGACATCAACTTTAAGGA TTTTTTTTTAGCCTTAAAAG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20205138 20205138 A AT 73 2 39 29 1 1 A/+1 0.0274 2;2 53.5 1 37.0 1 60.0 4.000 0.0312 0 9 10.000 1 1.6 2 64 GTTGACATCAACTTTAAGGA TTTTTTTTTAGCCTTAAAAG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20172382 20172383 GA G 88 3 36 47 3 0 A/-1 0.0341 2;0 50.0 0 42.0 0 60.0 6.000 0.0380 0 0 2.000 2 0.7 3 79 CTAAGTATTACTACTGTAGT TGCATTTATACCTTCCAGCA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20205134 20205134 A C 74 34 22 18 20 14 A/C 0.4595 2;2 37.7 1 38.3 1 59.6 33.000 0.4853 0 0 2.000 1 1.9 33 68 GAGAGTTGACATCAACTTTA GGAATTTTTTTTTAGCCTTA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20205129 20205130 CT C 70 3 37 28 0 3 T/-1 0.0429 2;0 42.0 0 35.3 1 60.0 6.000 0.0455 0 2 3.000 1 1.0 3 66 ATTATGAGAGTTGACATCAA TTAAGGAATTTTTTTTTAGC 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20172467 20172467 A AT 74 2 36 32 2 0 A/+1 0.0270 2;0 35.6 1 43.4 0 62.0 4.000 0.0299 0 6 7.000 1 0.5 2 67 TCAAATGGAAATGCCATTTT TTTTTTCCCAGTGCACAGCC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20172467 20172467 A AT 74 2 36 32 2 0 A/+1 0.0270 2;0 34.5 1 42.0 0 60.0 4.000 0.0299 0 6 7.000 1 0.5 2 67 TCAAATGGAAATGCCATTTT TTTTTTCCCAGTGCACAGCC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20172475 20172475 C G 78 5 40 33 5 0 C/G 0.0641 2;0 9.6 1 34.8 1 60.0 4.000 0.0563 0.0513 0 3.000 1 2.4 4 71 AAATGCCATTTTATTTTTTC CAGTGCACAGCCAGCTATTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20172431 20172433 CGT C 78 2 36 39 1 1 G/-2 0.0256 2;2 60.0 1 42.0 0 60.0 4.000 0.0260 0 14 8.000 2 0.5 2 77 TTGCACTTTATTACATATAT GTGTGTGTGTGTGTCAAATG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20172430 20231770 T 98 3 35 39 3 0 T/ 0.0306 2;0 18.0 1 41.3 1 60.0 6.000 0.0417 0.0306 0 0 0 1.3 3 72 TTTGCACTTTATTACATATA GCGAATAGGAAGGGTTCTCG 20:20156209-20234556 INV 0 3-0-0 @@ -775,12 +775,12 @@ NA24385_chr_20_20156208_20234556 testbed 20 20173199 20173200 CT C 123 2 58 61 0 NA24385_chr_20_20156208_20234556 testbed 20 20205967 20205968 GT G 63 2 36 25 0 2 T/-1 0.0317 2;0 11.5 1 42.0 1 60.0 4.000 0.0351 0.0159 4 5.000 1 1.5 2 57 TCATACCTGGCGATGGATAT TTTTAATTAAAACCTGGGCA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20173256 20173256 C T 98 2 34 62 0 2 C/T 0.0204 2;0 48.0 0 42.0 0 60.0 4.000 0.0211 0 0 3.000 1 1.0 2 95 GTAGTTGCTGCTGCACAGTC CTACTTATCTCCTTACACCT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20205615 20205615 C T 92 2 46 44 0 2 C/T 0.0217 2;0 38.0 0 42.0 0 60.0 4.000 0.0233 0 1 2.000 1 2.0 2 86 TAAGACCCAAAACAGAATCT CAATGCATGGGACATTTTTT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20205581 20205581 T TTCTATGAAGGAAATAAGACCCGAAACAGAATCTCCAATGCATGGGACATTTTTTGGCAGATGTTCAGAGGGAGAAAAGGAAAAGCTGGCTTGACTCATAGGATCTTGCATGTCTGTTTTTCTTTCCCATGAAAACTTGTAGTTTGAAGGAACATAAAGGAAGAAAATATTCTGCTTTCATTAAAAAATAACCTGTGCTTCCTGCTTCTGTGCAAAATAAACCCTTCATAAAGCAGCAGAAGCCATCTTCATTTACAGTTGTCACTGAAGGATGTTTCCAGGCTGGGAAGAATTTTTTTCAAGGCATTTAAAAACCGTCTGTACTAATAAAAGAAAAACACGATTTTTTCAGGTCAGAAGACTTCATCATACCTGGCGATGGATATGTTTTTAATTAAAACCTGGGCACAAAATTGGGTTGACTGTGAATCATTGTGATGCCTGATCACTCTCCTGAGACACCCACCATCATTGGTACTGGTTGCCTGCTCTTGACACCGGAGGCCAC 84 4 37 37 1 3 T/+507 0.0476 2;2 69.1 1 45.7 1 68.0 8.000 0.0533 0.0476 21 3.000 1 0.8 4 75 CTAGGGCTTTTATTTTTACT TCTATGAAGGAAATAAGACC 20:20156209-20234556 Insertion 0 4-2-2 +NA24385_chr_20_20156208_20234556 testbed 20 20205581 20205581 T TTCTATGAAGGAAATAAGACCCGAAACAGAATCTCCAATGCATGGGACATTTTTTGGCAGATGTTCAGAGGGAGAAAAGGAAAAGCTGGCTTGACTCATAGGATCTTGCATGTCTGTTTTTCTTTCCCATGAAAACTTGTAGTTTGAAGGAACATAAAGGAAGAAAATATTCTGCTTTCATTAAAAAATAACCTGTGCTTCCTGCTTCTGTGCAAAATAAACCCTTCATAAAGCAGCAGAAGCCATCTTCATTTACAGTTGTCACTGAAGGATGTTTCCAGGCTGGGAAGAATTTTTTTCAAGGCATTTAAAAACCGTCTGTACTAATAAAAGAAAAACACGATTTTTTCAGGTCAGAAGACTTCATCATACCTGGCGATGGATATGTTTTTAATTAAAACCTGGGCACAAAATTGGGTTGACTGTGAATCATTGTGATGCCTGATCACTCTCCTGAGACACCCACCATCATTGGTACTGGTTGCCTGCTCTTGACACCGGAGGCCAC 84 4 37 37 1 3 T/+507 0.0476 2;2 61.0 1 40.4 1 60.0 8.000 0.0533 0.0476 21 3.000 1 0.8 4 75 CTAGGGCTTTTATTTTTACT TCTATGAAGGAAATAAGACC 20:20156209-20234556 Insertion 0 4-2-2 NA24385_chr_20_20156208_20234556 testbed 20 20172978 20172979 CT C 147 2 84 61 1 1 T/-1 0.0136 2;2 37.0 1 42.0 0 60.0 4.000 0.0147 0 2 3.000 1 0 2 136 CCTGTGGGTCCACTCTCCAC TTCTCCACCCTGTTCTGTCT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20172986 20172986 A T 142 2 82 55 0 2 A/T 0.0141 2;0 24.0 1 34.5 1 60.0 4.000 0.0168 0 0 3.000 1 1.5 2 119 TCCACTCTCCACCTTTCTCC CCCTGTTCTGTCTCAGGGAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20205718 20205718 T C 104 61 22 21 26 35 T/C 0.5865 2;2 32.9 1 38.1 1 60.0 11.200 0.5957 0.0096 0 1.000 1 1.5 56 94 TTTTCTTTCCCATGAAAACT GTAGTTTGAAGGAACATAAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20205702 20205703 CT C 97 2 45 50 2 0 T/-1 0.0206 2;0 22.0 0 42.0 0 60.0 4.000 0.0222 0 2 3.000 1 1.0 2 90 GATCTTGCATGTCTGTTTTT TTCCCATGAAAACTTGTAGT 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20205696 20205696 G GT 95 2 44 47 1 1 G/+1 0.0211 2;2 33.9 1 43.1 0 61.6 4.000 0.0227 0 5 6.000 1 1.0 2 88 TCATAGGATCTTGCATGTCT TTTTTCTTTCCCATGAAAAC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20205696 20205696 G GT 95 2 44 47 1 1 G/+1 0.0211 2;2 33.0 1 42.0 0 60.0 4.000 0.0227 0 5 6.000 1 1.0 2 88 TCATAGGATCTTGCATGTCT TTTTTCTTTCCCATGAAAAC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20173047 20173047 T A 116 2 58 56 0 2 T/A 0.0172 2;0 37.0 0 42.0 0 60.0 4.000 0.0180 0 1 2.000 1 3.5 2 111 TTATGGGTACCTTTGCCTTT GGCTGCCCGTTGGGTTTGGT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20205810 20205810 A G 104 2 48 54 0 2 A/G 0.0192 2;0 48.0 0 39.5 1 60.0 4.000 0.0200 0 0 3.000 1 1.5 2 100 GTGCAAAATAAACCCTTCAT AAGCAGCAGAAGCCATCTTC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20173055 20173055 C T 120 2 59 58 2 0 C/T 0.0167 2;0 19.0 0 37.0 1 60.0 4.000 0.0177 0 0 1.000 1 1.0 2 113 ACCTTTGCCTTTTGGCTGCC GTTGGGTTTGGTGGATGGAG 20:20156209-20234556 SNV 0 0 @@ -796,7 +796,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20173331 20173331 T TGATCATACTGTTTCC NA24385_chr_20_20156208_20234556 testbed 20 20206160 20206161 GA G 90 2 54 34 0 2 A/-1 0.0222 2;0 37.0 0 42.0 0 60.0 4.000 0.0250 0 2 3.000 1 0 2 80 GTGTTACAGCTATTGTGTGG AACAAAAGCCATTCTGTTCT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20206151 20206151 A G 88 3 50 35 3 0 A/G 0.0341 2;0 7.0 0 37.0 1 60.0 6.000 0.0380 0 2 2.000 1 1.7 3 79 CAGCTGTTGGTGTTACAGCT TTGTGTGGGAAACAAAAGCC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20173443 20173443 A G 93 3 41 49 2 1 A/G 0.0323 2;2 37.0 1 31.7 1 60.0 2.000 0.0238 0 0 2.000 2 2.7 2 84 CTGAGTATACACTTTTTCTC TATTTTCTAAATGTTTGTCT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20173543 20173543 G GT 69 2 37 29 0 2 G/+1 0.0290 2;0 35.9 0 43.1 0 61.6 4.000 0.0308 0 5 6.000 1 0.5 2 65 AATATCTTTGAGCTTGGAGA TTTTTCAGCTGATTCTCTTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20173543 20173543 G GT 69 2 37 29 0 2 G/+1 0.0290 2;0 35.0 0 42.0 0 60.0 4.000 0.0308 0 5 6.000 1 0.5 2 65 AATATCTTTGAGCTTGGAGA TTTTTCAGCTGATTCTCTTT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20206312 20206312 T G 74 2 29 43 1 1 T/G 0.0270 2;2 33.5 1 32.0 0 60.0 4.000 0.0278 0 0 1.000 1 3.0 2 72 TCCAACAGCAGAGGGGAATG CTGAACATATCTCCTTTTGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20206273 20206273 T TTCAATGTTAGCTTACACTTCCAACAGCAGAGGGGAATGTCTGAACATATCTCCTTTTGAAAAGAATCTTGGCTTCTGACCTCTGTCAAGATGCTTGCATTTTAAATCTGTTAACTAGACCTGCGATTAGATGCCATCATTACAACACATATGC 78 2 37 41 1 1 T/+153 0.0256 2;2 51.5 1 41.8 1 60.0 4.000 0.0253 0.0256 70 3.000 1 0 2 79 AATTTCATTACTGCCCATGT TCAATGTTAGCTTACACTTC 20:20156209-20234556 Insertion 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20206901 20206901 A AAAAGTATTCCTATTTTCACTTACCTTTCACTTTTCTGCCATTGCCGTGAGAAGAACATGCTCTGGCTCTCTTGCATCAAATAAGAGAAATGTGAGGCAGGTTTGGAATCTGCAAATTGGAGCCAGACCCACCTGAGTCCAACCTAGATCAGCCTACTTCCAGCTGACCTAGAATTGCATGAGCCAGAATAAGTGACAGTTGTTTTAAGCCAATGCATTTTGAAGTGGTTTCACTT 104 2 39 49 1 1 A/+235 0.0192 2;2 35.0 1 33.9 1 60.0 4.000 0.0230 0.0192 70 4.000 1 0.5 2 87 ACTTGCTTTGGCCAGATTTT AAAGTATTCCTATTTTCACT 20:20156209-20234556 Insertion 0 2-2-2 @@ -809,7 +809,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20206984 20207050 AGAGAAATGTGAGGCAGG NA24385_chr_20_20156208_20234556 testbed 20 20174300 20174300 T C 68 37 19 12 24 13 T/C 0.5441 2;2 32.1 1 38.5 1 60.0 17.500 0.5303 0 0 1.000 1 1.6 35 66 TGGAGTCTTGCTCTATCCCC AGGCTGGAGTTCAGTGATGT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20173924 20173926 TTC T 87 4 39 44 2 2 T/-2 0.0460 2;2 16.0 1 41.0 1 60.0 8.000 0.0494 0.0230 1 3.000 1 0 4 81 GTGTAATCGTGGCTGTAGGT TGATAGATATCCCTTATCAA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20206665 20206665 A ATTATTTTCATTTAGAAACTATATCAATCTAGGAAGTTTTCAGTAGCATATAAAAAACAAACTGGCCTAAACAATCAAGGAAGTGCAGTGGGCTGTGTGGTTCTTCCCAGCCTTCATCCCTCCCTGGGCTGTGTCATTTGCTGTGTGATTTTGAGGTTCCTCCTTCTAAAGG 74 4 28 30 0 4 A/+171 0.0541 2;0 27.5 1 37.2 1 60.0 8.000 0.0667 0.0541 70 2.000 1 1.2 4 60 TTCACCCAAATGGTATATTT TTATTTTCATTTAGAAACTA 20:20156209-20234556 Insertion 0 4-1-1 -NA24385_chr_20_20156208_20234556 testbed 20 20173984 20173984 G GT 104 7 54 41 2 5 G/+1 0.0673 2;2 29.3 1 39.1 1 61.6 14.000 0.0722 0.0192 5 6.000 1 0 7 97 CTCTTTCTATCTTATTAAAA TTTTTATTATGAATGAGTGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20173984 20173984 G GT 104 7 54 41 2 5 G/+1 0.0673 2;2 28.6 1 38.1 1 60.0 14.000 0.0722 0.0192 5 6.000 1 0 7 97 CTCTTTCTATCTTATTAAAA TTTTTATTATGAATGAGTGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20207402 20207402 G GGTCAACTTAGGTCACATGTGTATCCTGACCCAGTCACTGAGGAAAGAGAGTGGGAGTATGCCACGTGGTTTACGTGAATCAGAGTCCCTCTTGAAAATGGGAGTGAGTCCAATCTCTTCCGAAATCTGTGTTGTGCCAAATTAAAGGTGGGAGTTGTAGGGTGGAACAGATGTTGAGAGGTACAAGCAATGTTAATTATGGAGTCTGAATCTCCCACTTTTGTTTTAAATTTCTATCAATATATTGTTTGGCTCAAGCCATTTTCCTTCCTCCATGTTGCTAGGCTATCTAGAGACAGAGAAATGGGATTTAAGCTCTAGATCTGAGATGTTACCTTTAAATGGCAAAGCGCATGGCCACACCCATACCCCTACAGTACTGGAAAGTGGGTGGGAACCCAAATAAGACTTTACCATTATTCTGTCAGACTTCCAACTCCTGGTATCCCAGGGTTTTAAGAAAATCCAAAGCAGGTTTGACCTATCAGAATGCGGAGATTTCTGATGTAGAGGATGAAGTTAATGCTGATGTAATTAACAGCATGGGATGAGGTGATAAGAATATCTTTCCACTGACTTCTGGTCACCATTGTTTCCAATGAGAA 90 2 49 41 0 2 G/+604 0.0222 2;0 57.0 1 37.4 1 60.0 4.000 0.0222 0.0222 70 2.000 1 0 2 90 CCTGGGCTTCACTCTGATGA GTCAACTTAGGTCACATGTG 20:20156209-20234556 Insertion 0 2-5-1 NA24385_chr_20_20156208_20234556 testbed 20 20207476 20207476 G A 125 3 67 55 0 3 G/A 0.0240 2;0 26.0 1 42.0 1 60.0 6.000 0.0242 0.0080 0 1.000 1 1.0 3 124 GAGTATGCCACGTGGTTTAC TGAATCAGAGTCCCTCTTGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20207536 20207536 T A 112 3 56 53 1 2 T/A 0.0268 2;2 7.0 0 38.7 1 60.0 6.000 0.0283 0 0 2.000 2 1.3 3 106 CTCTTCCGAAATCTGTGTTG GCCAAATTAAAGGTGGGAGT 20:20156209-20234556 SNV 0 0 @@ -818,14 +818,14 @@ NA24385_chr_20_20156208_20234556 testbed 20 20207216 20207217 GT G 86 2 48 36 0 NA24385_chr_20_20156208_20234556 testbed 20 20207200 20207200 A T 84 3 38 42 2 1 A/T 0.0357 2;2 10.3 1 25.0 1 60.0 2.000 0.0250 0.0238 1 1.000 1 1.3 2 80 CTGAAGAGTCCAAAGGTAGT TGGGTTTCGGGTAGGGTTTG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20207196 20207197 TA T 83 2 36 45 1 1 A/-1 0.0241 2;2 14.0 1 42.0 1 60.0 4.000 0.0263 0.0120 0 2.000 2 0.5 2 76 ATAACTGAAGAGTCCAAAGG GTATGGGTTTCGGGTAGGGT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20174518 20174518 A G 90 2 38 50 2 0 A/G 0.0222 2;0 6.0 0 32.0 0 60.0 4.000 0.0230 0 0 3.000 1 1.5 2 87 TCTGCCCCCCTCAACCTCCC AAGTGCTGGGATTACAGGCA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20174501 20174501 G GC 82 4 32 44 2 2 G/+1 0.0488 2;2 23.8 1 40.8 1 54.8 8.000 0.0519 0 6 7.000 1 0 4 77 CTCCTGACTTCAGATGATCT CCCCCCTCAACCTCCCAAAG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20174501 20174501 G GC 82 4 32 44 2 2 G/+1 0.0488 2;2 23.0 1 39.5 1 53.0 8.000 0.0519 0 6 7.000 1 0 4 77 CTCCTGACTTCAGATGATCT CCCCCCTCAACCTCCCAAAG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20174464 20174465 GC G 81 2 38 41 0 2 C/-1 0.0247 2;0 74.0 0 42.0 0 60.0 4.000 0.0260 0 1 2.000 1 2.0 2 77 GATGGGGTTTCACCATGTTG CAGTCTGGTCTTGAACTCCT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20174564 20174564 T C 88 2 44 42 0 2 T/C 0.0227 2;0 18.0 1 37.0 1 60.0 4.000 0.0235 0.0114 1 2.000 1 2.5 2 85 CCCCTGCGCCAGCCTCATTC AATTATTTCTCATCAGAATG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20207318 20207318 C CGTTTACACCACGTGCCATCTAGAAAACAAGAAGGCTTCTCTTCTTCAACTATCATGCAAAAGTCCTGGGCTTCACTCTGATGAGGTCAACTTAGGTCACATGTGTATCCTGACCCAGTCACTGAGGAAAGAGAGTGGGAGTATGCCACGTGGTTTACGTGAATCAGAGTCCCTCTTGAAAATGGGAGTGAGTCCAATCTCTTCCGAAATCTGTGTTGTGCCAAATTAAAGGTGGGAGTTGTAGGGTGGAACAGATGTTGAGAGGTACAAGCAATGTTAATTATGGAGTCTGAATCTCCCACTTTTGTTTTAAATTTCTATCA 87 3 49 38 2 1 C/+322 0.0345 2;2 37.0 1 40.7 1 60.0 6.000 0.0341 0.0345 70 1.000 1 0 3 88 CATAGCCATTTCAGGTTTCA GTTTACACCACGTGCCATCT 20:20156209-20234556 Insertion 0 3-5-1 NA24385_chr_20_20156208_20234556 testbed 20 20207312 20207313 GT G 86 2 43 39 2 0 T/-1 0.0233 2;0 55.0 0 42.0 0 60.0 4.000 0.0250 0 2 3.000 1 0 2 80 GATGACCATAGCCATTTCAG TTCACGTTTACACCACGTGC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20174552 20174552 C CCAGCCTCATTCTAATTATTTCTCATCAGAATGTTGTCTTCCAGTATCCAATGTCATTGATAAAATATAATCTGATACCAACCTGATTCTTGATCCTTTATGAATAAATGTGTGTTTCTTTGCTCTCCTTCTTGAGAATTAAATTTTCTTTTTGTATCTGGAATTCTGAAATTTTGCCAAGAAATATCATGTCTCTTTTGGCAGTTTGTCTTCTATGATTTCATTAATTATTTCTTCTCCTCCATTTTCTCCATTCTTCTTTTCTTAAATTCTTTTTTAGATGGATATTAGATCTTTTGAATTGAT 88 2 45 43 2 0 C/+305 0.0227 2;0 32.0 1 41.1 1 60.0 4.000 0.0230 0.0227 70 2.000 1 0.5 2 87 ACAGGCATCAGCCCCCTGCG CAGCCTCATTCTAATTATTT 20:20156209-20234556 Insertion 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20175139 20175139 T G 89 87 0 1 42 45 T/G 0.9775 0;2 30.1 1 39.1 1 60.0 20.750 0.9881 0.0899 1 2.000 1 1.7 83 84 AAAATTCTCTGCTATTTCCT AATAATTTGTCTTCTCTGCA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20175110 20175110 A AT 108 2 40 63 2 0 A/+1 0.0185 2;0 54.1 1 43.7 0 62.4 4.000 0.0211 0 7 8.000 1 2.6 2 95 CTCTGAGTATACTCTGTAGA TTTTTTTAAAAATTCTCTGC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20175110 20175110 A AT 108 2 40 63 2 0 A/+1 0.0185 2;0 52.0 1 42.0 0 60.0 4.000 0.0211 0 7 8.000 1 2.6 2 95 CTCTGAGTATACTCTGTAGA TTTTTTTAAAAATTCTCTGC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20175116 20175117 TT AA 113 17 34 61 9 8 TT/AA 0.1504 2;2 10.5 1 40.2 1 60.0 16.000 0.1538 0.0088 1 7.000 1 3.3 16 104 GTATACTCTGTAGAATTTTT AAAAATTCTCTGCTATTTCC 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20208100 20208100 G GGCACATATCCCAATGTTCTTCCAAGACTACTCTATCACTTCTTTGTAAAACTTTACTTTGCACATTTAATGTACCCCTTGCAGCTTCTGCAGGGAAGTAAATGAAATCAATGACTAATTCAGGTAATTTTTGTAAACATGGACATTAACATGATCACCAGTTACTTTCTGTGCTTCTGAGAGGCCTCCTGACTCTGAAGTATCTGAAAGGTTGAACAACCCTAATAATTGAATGCATTTTTGCCATTTAATAAATGTTTGCCATTTTACAAATATTATTGAGCATCTACTGTCCACAAGACACCGCGTTAAGTAACGTGAGGGACAGAGAATTGAACATGAGCTAAAACTTGTCTTCAAGTACCCAACTAATATAATTTGTCACTCAAGGTTTCAGGGAAACTGTGGACAGAAGAAA 62 4 13 28 4 0 G/+417 0.0645 2;0 61.0 1 41.2 1 60.0 8.000 0.0976 0.0645 70 3.000 1 0.5 4 41 AAATAGAACCAAGATCTTTT GCACATATCCCAATGTTCTT 20:20156209-20234556 Insertion 0 4-2-2 NA24385_chr_20_20156208_20234556 testbed 20 20207655 20207655 T A 99 2 54 43 1 1 T/A 0.0202 2;2 28.0 1 42.0 0 60.0 4.000 0.0215 0 0 1.000 1 1.5 2 93 CTATCAATATATTGTTTGGC CAAGCCATTTTCCTTCCTCC 20:20156209-20234556 SNV 0 0 @@ -844,7 +844,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20175465 20175466 CT C 92 2 40 50 0 NA24385_chr_20_20156208_20234556 testbed 20 20208194 20208195 GA G 67 2 38 27 0 2 A/-1 0.0299 2;0 20.0 0 39.5 1 60.0 4.000 0.0323 0 1 3.000 1 1.0 2 62 CCCCTTGCAGCTTCTGCAGG AGTAAATGAAATCAATGACT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20175526 20175526 A T 90 4 45 40 1 3 A/T 0.0444 2;2 8.0 0 34.2 1 60.0 3.000 0.0375 0 0 2.000 1 2.5 3 80 GCTCTCATTACACCAAAAAT ATTTTTGTTGTTGTTATTTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20175594 20175594 T C 84 2 42 39 0 2 T/C 0.0238 2;0 55.0 0 39.5 1 60.0 4.000 0.0260 0 0 2.000 3 2.0 2 77 GATGCACATGGCCCATCTGC GTTTTGAGCTAATAACCTCT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20208336 20208336 A AT 85 2 41 39 2 0 A/+1 0.0235 2;0 37.0 0 43.1 0 61.6 4.000 0.0260 0 5 6.000 1 0 2 77 CAACCCTAATAATTGAATGC TTTTTGCCATTTAATAAATG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20208336 20208336 A AT 85 2 41 39 2 0 A/+1 0.0235 2;0 36.0 0 42.0 0 60.0 4.000 0.0260 0 5 6.000 1 0 2 77 CAACCCTAATAATTGAATGC TTTTTGCCATTTAATAAATG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20208915 20208916 CA C 102 6 43 53 6 0 A/-1 0.0588 2;0 31.0 1 41.2 1 60.0 12.000 0.0619 0 2 3.000 1 0 6 97 GAGTTATGCTTTAAACCATA AACAGAAAACTAACATTGGA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20208909 20208909 A T 108 2 53 52 2 0 A/T 0.0185 2;0 38.0 0 42.0 0 60.0 4.000 0.0211 0 0 2.000 1 1.0 2 95 CCAGATGAGTTATGCTTTAA CCATACAAACAGAAAACTAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20176356 20176356 T TTAAGAAGTGCACAGGGATAAGGCCCAATTACGCAGTTTTATAGCAGGCCAGCCAGCCATACATGTAATCAAAATGTATGATATGGGGCCAGGCATGGTGGCTCACACCTGTAATTCCATCATTTGGGAGGCCGAGACAGGCAGATCACTTGAGGCCAGGAGTTCAAGACCTGCCTGGCCAACATGGTGAAACCCTATCTCTACTAGAATTACAAAAAAATTAGCCAGGCGTGATGGTGGGCGCCTGAAATCCCAGCTACTTGGGAGGCTGAGGTGGGAGGATCTCTTGAACCCAGGAGGTGAAGGTTGCAGTGAGCGAAGATCGCGCCAGTGTATTCCAGCCTGGGTGACAGAGTGATACTGTCTCAAACTAAACAAAACAAAACAAAGTGTGTAACTTGGGGGTGACACATTTCCACACTAACAGGTGAATAGTAATGCATCAGAGAACACCAGTGGCTCTGTTTGCCCGACTCCTGAATTTCCCACAGGCTCCGTCTCTTGTGCTGACTGGCTTGTGCTCAC 85 2 30 52 2 0 T/+524 0.0235 2;0 56.0 1 36.6 1 60.0 4.000 0.0267 0.0235 70 3.000 1 0 2 75 CATCAAGGGGGATAGAAGGT TAAGAAGTGCACAGGGATAA 20:20156209-20234556 Insertion 0 2-4-2 @@ -854,7 +854,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20208818 20208818 T A 99 3 51 45 0 3 NA24385_chr_20_20156208_20234556 testbed 20 20176019 20176020 GT G 83 4 44 35 0 4 T/-1 0.0482 2;0 39.5 1 39.5 1 60.0 8.000 0.0506 0 3 4.000 1 0.2 4 79 AAGGAGAAATATAAGTTGGT TTTGCAACCTGCATATATGA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20208792 20208792 T A 90 2 44 44 2 0 T/A 0.0222 2;0 47.0 1 42.0 0 60.0 4.000 0.0233 0 1 2.000 1 1.5 2 86 TATTAGGTTTGTTTTGGTGG AATGTCCTGGTTAGATAATT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20208769 20208769 C A 87 2 44 41 2 0 C/A 0.0230 2;0 7.0 0 42.0 0 60.0 4.000 0.0235 0 1 1.000 1 1.0 2 85 TTATGGTGGCTGTACATGGG ACTATTAGGTTTGTTTTGGT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20208880 20208880 A AT 84 3 35 40 3 0 A/+1 0.0357 2;0 39.8 1 42.2 1 62.8 6.000 0.0417 0 8 9.000 1 0 3 72 GACTCCTTCTTTGTCTTCGT TTTTTTTTCCAGATGAGTTA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20208880 20208880 A AT 84 3 35 40 3 0 A/+1 0.0357 2;0 38.0 1 40.3 1 60.0 6.000 0.0417 0 8 9.000 1 0 3 72 GACTCCTTCTTTGTCTTCGT TTTTTTTTCCAGATGAGTTA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20208895 20208895 G GAGTTATGCTTTAAACCATACAAACAGAAAACTAACATTGGAACCTAAAATTACTGTCAATGCCAAGATCATTGTGGTTGGTGCATCCAGTGTTGGAATTTCCTTCCTAGAGACATTGGTATTTTGGTGAGTTGTTTCACTCTATTGATTGATTGGTTTTTAAATAATAAAAATTATCTTCCTACATCTGAAGAGAACACCATCAGAGA 98 4 50 47 4 0 G/+208 0.0408 2;0 61.8 1 39.5 1 60.0 8.000 0.0412 0.0408 70 2.000 1 0 4 97 TTCGTATTTTTTTTCCAGAT AGTTATGCTTTAAACCATAC 20:20156209-20234556 Insertion 0 4-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20208877 20208877 C T 87 2 43 42 0 2 C/T 0.0230 2;0 48.0 0 37.0 1 60.0 4.000 0.0233 0 0 1.000 1 1.5 2 86 TTTGACTCCTTCTTTGTCTT GTATTTTTTTTCCAGATGAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20176094 20176094 A G 105 2 57 45 0 2 A/G 0.0190 2;0 6.0 0 37.0 1 60.0 4.000 0.0202 0 0 2.000 2 5.5 2 99 GCTGCTGTCATCAGAGAGTC CACTCACCTTGGAGTGCTCC 20:20156209-20234556 SNV 0 0 @@ -868,9 +868,9 @@ NA24385_chr_20_20156208_20234556 testbed 20 20176387 20176387 C A 83 3 34 46 3 0 NA24385_chr_20_20156208_20234556 testbed 20 20176391 20176392 GT G 79 2 33 44 0 2 T/-1 0.0253 2;0 61.0 0 42.0 0 60.0 4.000 0.0286 0 3 4.000 1 0 2 70 GGATAAGGCCCAATTACGCA TTTATAGCAGGCCAGCCAGC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20176453 20176453 G GTGTGAGCCACCATGCC 76 2 37 37 1 1 G/+16 0.0263 2;2 15.0 1 40.3 1 60.0 4.000 0.0274 0.0263 2 2.000 1 0.5 2 73 ATGATATGGGGCCAGGCATG TGGCTCACACCTGTAATTCC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20176457 20176457 C G 80 2 38 39 2 0 C/G 0.0250 2;0 32.0 0 39.5 1 60.0 4.000 0.0274 0 0 1.000 1 1.0 2 73 TATGGGGCCAGGCATGGTGG TCACACCTGTAATTCCATCA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20176568 20176568 C CA 94 3 54 34 1 2 C/+1 0.0319 2;2 47.1 1 43.7 0 62.4 6.000 0.0361 0 7 8.000 1 0 3 83 CCCTATCTCTACTAGAATTA AAAAAAATTAGCCAGGCGTG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20176568 20176568 C CA 94 3 54 34 1 2 C/+1 0.0319 2;2 45.3 1 42.0 0 60.0 6.000 0.0361 0 7 8.000 1 0 3 83 CCCTATCTCTACTAGAATTA AAAAAAATTAGCCAGGCGTG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20176558 20176558 A T 91 3 55 33 3 0 A/T 0.0330 2;0 30.0 0 42.0 0 60.0 6.000 0.0353 0 0 1.000 1 1.0 3 85 CATGGTGAAACCCTATCTCT CTAGAATTACAAAAAAATTA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20209289 20209289 A AT 66 2 41 22 1 1 A/+1 0.0303 2;2 34.4 1 36.2 1 61.6 4.000 0.0312 0.0152 5 6.000 1 0 2 64 TTTATGTGTTGTCTGTGGCC TTTTTGTGCTACAATAGCAG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20209289 20209289 A AT 66 2 41 22 1 1 A/+1 0.0303 2;2 33.5 1 35.2 1 60.0 4.000 0.0312 0.0152 5 6.000 1 0 2 64 TTTATGTGTTGTCTGTGGCC TTTTTGTGCTACAATAGCAG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20176615 20176616 CT C 88 2 46 39 2 0 T/-1 0.0227 2;0 60.0 0 42.0 0 60.0 4.000 0.0256 0 1 2.000 1 1.0 2 78 GGCGCCTGAAATCCCAGCTA TGGGAGGCTGAGGTGGGAGG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20176583 20176583 G A 103 2 57 44 2 0 G/A 0.0194 2;0 27.0 0 42.0 0 60.0 4.000 0.0202 0 0 2.000 1 1.0 2 99 AATTACAAAAAAATTAGCCA GCGTGATGGTGGGCGCCTGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20176587 20177018 T 104 2 57 40 2 0 T/ 0.0192 2;0 70.0 1 40.8 1 48.0 4.000 0.0233 0.0192 1 1.000 1 0 2 86 ACAAAAAAATTAGCCAGGCG TCAGAACAACTAGCACTCAG 20:20156209-20234556 INV 0 2-0-0 @@ -881,12 +881,12 @@ NA24385_chr_20_20156208_20234556 testbed 20 20210019 20210019 C CTTTGGGAACCACAGA NA24385_chr_20_20156208_20234556 testbed 20 20177301 20177301 C T 86 3 46 37 0 3 C/T 0.0349 2;0 20.0 0 42.0 0 60.0 6.000 0.0361 0 1 1.000 1 1.3 3 83 AAGAACACGGGCACATGCAT ACTTTGCCCTCAACCCCATT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20210169 20210170 GA G 72 3 39 30 1 2 A/-1 0.0417 2;2 20.0 1 42.0 0 60.0 6.000 0.0441 0 1 2.000 1 0.3 3 68 AGCCTACCATCACTCTTCTG AGCCAGCAGAGTTCTTAGCT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20209688 20209689 TA T 64 2 34 28 0 2 A/-1 0.0312 2;0 26.0 0 42.0 0 60.0 4.000 0.0317 0 3 4.000 1 1.0 2 63 TTTGGATCCCCTGGAACAGG AAACCCTTCAGGGAATATGG 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20209784 20209784 A AT 60 2 38 18 1 1 A/+1 0.0333 2;2 30.3 1 35.4 1 61.6 4.000 0.0385 0 5 6.000 1 0 2 52 AAGGTTTCCTTTCAGAGCCC TTTTTCTGATGGGTGATGCT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20209784 20209784 A AT 60 2 38 18 1 1 A/+1 0.0333 2;2 29.5 1 34.5 1 60.0 4.000 0.0385 0 5 6.000 1 0 2 52 AAGGTTTCCTTTCAGAGCCC TTTTTCTGATGGGTGATGCT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20209810 20209811 AT A 61 2 39 20 1 1 T/-1 0.0328 2;2 40.0 0 42.0 0 60.0 4.000 0.0357 0 2 3.000 1 0 2 56 CTGATGGGTGATGCTCAGGG TTCCAGCATCCCCAGTCTCT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20209916 20209917 AT A 67 2 32 33 2 0 T/-1 0.0299 2;0 53.0 0 42.0 0 60.0 4.000 0.0328 0 0 2.000 2 0 2 61 CGGGATCATGGCCTGGCATC CAGCACCTAACATGGAGCCC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20177148 20177148 T TATCACAAAATGCATGCCGTTTGTTTAAAATGCTTGTAGAAACCATCCCTTCTGTCTCTTCTGTAGGACATTGAGTACATACGGTCCCATTACAACATTGAAGATTTCATCTACTTCAGTCACCACCAGCGCGAAGAACACGGGCACATGCATCACTTTGCCCTCAACCCCATTTTCCGGCACTACACCAAGTTCTTTCTGAAGGAGATCCTGCGTTTAGGCTTTAAATCCTGTCTCTACTACCGTGTTTACCCAAAATCCAGAGAAGGCAAGGTAAGAGAATGGTGCAATTCACTTTCCCAGCAGGTCAACGTTCACAGTGTTGTTGGTGTTGTACGCCGCATTCTATTCATTCCTCTCATGATGGGTTTTGATGATAACATGGGTCTGAATTTCCAATGGCCATATTTAGTTTGGCCTTTTTCATAAACTACAGTGACATTCTGTAGGCTTCGAATTTCTGACACAATCACAACTAATATAATTGGTAGTACAATATGTTGGCTTTTCTATATTGACAAAATAGAGACTGAAAACTGTGCAGAAATGCTCTAAGAGCATGAAGATCTAATAATTTCTTATGATACGTGAGTACAATGCCAACATGATCCTATTCTGTTCCTTCAAGCCAAGAACATTTCAGTGATGAATCCATAGAATAAATTAATTCTATTTTAGAAGACTGGCATGCTATCCCAGCATTCCAAATAAGCACTATACACACCCCTACTAGGTGATGGAGAGAAAGTGCGGAGATG 99 4 32 29 2 2 T/+757 0.0404 2;2 38.0 1 40.5 1 60.0 8.000 0.0656 0.0404 70 3.000 1 1.2 4 61 AGTAATTTTTAAAAGATATT ATCACAAAATGCATGCCGTT 20:20156209-20234556 Insertion 0 4-1-1 NA24385_chr_20_20156208_20234556 testbed 20 20177107 20177108 GT G 57 4 24 29 0 4 T/-1 0.0702 2;0 28.0 0 42.0 0 60.0 8.000 0.0800 0 2 3.000 1 0.5 4 50 AATATGGAAGAGAAAAATAC TTCTTACTATCATACCTAAA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20177098 20177098 G GA 57 2 21 34 2 0 G/+1 0.0351 2;0 38.5 1 40.6 1 61.6 4.000 0.0392 0 5 6.000 1 0 2 51 GAGGTGGCAAATATGGAAGA AAAAATACGTTTCTTACTAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20177098 20177098 G GA 57 2 21 34 2 0 G/+1 0.0351 2;0 37.5 1 39.5 1 60.0 4.000 0.0392 0 5 6.000 1 0 2 51 GAGGTGGCAAATATGGAAGA AAAAATACGTTTCTTACTAT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20177701 20177701 A T 102 6 48 48 6 0 A/T 0.0588 2;0 8.0 0 42.0 0 60.0 12.000 0.0645 0 0 2.000 1 1.7 6 93 AAACTGTGCAGAAATGCTCT AGAGCATGAAGATCTAATAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20177709 20177709 G T 105 3 50 52 3 0 G/T 0.0286 2;0 16.0 0 38.7 1 60.0 6.000 0.0316 0 0 2.000 1 2.0 3 95 CAGAAATGCTCTAAGAGCAT AAGATCTAATAATTTCTTAT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20177707 20177708 AT A 105 2 53 50 0 2 T/-1 0.0190 2;0 45.0 0 42.0 0 60.0 4.000 0.0204 0 0 1.000 1 0 2 98 TGCAGAAATGCTCTAAGAGC GAAGATCTAATAATTTCTTA 20:20156209-20234556 Deletion 0 0 @@ -894,11 +894,11 @@ NA24385_chr_20_20156208_20234556 testbed 20 20177757 20177757 C A 93 2 54 36 0 2 NA24385_chr_20_20156208_20234556 testbed 20 20210509 20210509 A AAGCACCTAGGAATATTCCATTCCCAGGGTATGCCACGTTATAGTCTGAGTGCTTTACTTGTTCTGATGGGTCTCTTCCTCGAAAACTTTTGAACAGCAAGTTTTATGCAACCATTTTCGAATGATGAATTATTAAGGTGGAGCTGTGAAATTATAGCAGTTAAGAAGTT 127 4 74 31 2 2 A/+169 0.0315 2;2 31.0 1 41.6 1 60.0 8.000 0.0374 0.0315 70 2.000 1 0 4 107 TGCAAGCATGAAATGATGAG AGCACCTAGGAATATTCCAT 20:20156209-20234556 Insertion 0 4-2-1 NA24385_chr_20_20156208_20234556 testbed 20 20177808 20177808 A T 98 2 51 45 0 2 A/T 0.0204 2;0 13.0 0 42.0 0 60.0 4.000 0.0217 0 1 3.000 1 4.5 2 92 CAGTGATGAATCCATAGAAT AATTAATTCTATTTTAGAAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20177813 20177813 A T 92 2 47 43 0 2 A/T 0.0217 2;0 8.0 0 42.0 0 60.0 4.000 0.0222 0 0 2.000 1 4.5 2 90 ATGAATCCATAGAATAAATT ATTCTATTTTAGAAGACTGG 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20177860 20177860 C CACTATACACACCCCTACTATACACCCCCCTACTATACACCCCCCT 96 10 41 37 2 7 C/+45 0.1042 2;2 70.9 1 35.5 1 26.9 20.000 0.1190 0.0938 19 1.000 1 0 10 84 ATCCCAGCATTCCAAATAAG ACTATACACACCCCTACTAG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20177860 20177860 C CACTATACACACCCCTACTATACACCCCCCTACTATACACCCCCCT 96 10 41 37 2 7 C/+45 0.1042 2;2 64.1 1 32.1 1 24.3 20.000 0.1190 0.0938 19 1.000 1 0 10 84 ATCCCAGCATTCCAAATAAG ACTATACACACCCCTACTAG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20210193 20210193 G T 88 4 42 42 2 2 G/T 0.0455 2;2 18.5 1 42.0 0 60.0 8.000 0.0471 0 0 2.000 1 1.8 4 85 CCAGCAGAGTTCTTAGCTCA GACAGGTGGGGCCTTGTGAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20210180 20210180 A T 77 3 40 33 0 3 A/T 0.0390 2;0 32.0 0 35.3 1 60.0 2.000 0.0282 0 0 2.000 2 1.0 2 71 ACTCTTCTGGAAGCCAGCAG GTTCTTAGCTCAGGACAGGT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20210297 20210298 TG T 71 2 27 41 0 2 G/-1 0.0282 2;0 46.0 0 42.0 0 60.0 4.000 0.0303 0 1 2.000 1 0 2 66 GGAGACGAGCTAATCCCAAG GTTATTTTGCTCATTTAACA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20177566 20177566 C CT 99 3 43 51 0 3 C/+1 0.0303 2;0 77.7 1 31.7 1 61.6 6.000 0.0319 0.0202 5 6.000 1 1.4 3 94 ATGGCCATATTTAGTTTGGC TTTTTCATAAACTACAGTGA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20177566 20177566 C CT 99 3 43 51 0 3 C/+1 0.0303 2;0 75.7 1 30.9 1 60.0 6.000 0.0319 0.0202 5 6.000 1 1.4 3 94 ATGGCCATATTTAGTTTGGC TTTTTCATAAACTACAGTGA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20177547 20177547 T A 98 3 45 50 0 3 T/A 0.0306 2;0 6.0 0 42.0 0 60.0 6.000 0.0323 0 0 2.000 1 1.0 3 93 ACATGGGTCTGAATTTCCAA GGCCATATTTAGTTTGGCCT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20210317 20210317 C T 64 2 22 40 1 1 C/T 0.0312 2;2 36.5 1 42.0 0 60.0 4.000 0.0323 0 1 1.000 1 1.0 2 62 TGGTTATTTTGCTCATTTAA ATCACATTAACCAGATAAAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20177641 20177641 C T 90 3 42 45 1 2 C/T 0.0333 2;2 28.0 1 31.7 1 60.0 2.000 0.0233 0 1 2.000 1 2.7 2 86 AACTAATATAATTGGTAGTA AATATGTTGGCTTTTCTATA 20:20156209-20234556 SNV 0 0 @@ -912,24 +912,24 @@ NA24385_chr_20_20156208_20234556 testbed 20 20211049 20211049 T A 101 2 37 62 0 NA24385_chr_20_20156208_20234556 testbed 20 20211050 20211050 A T 98 2 38 58 0 2 A/T 0.0204 2;0 57.0 0 42.0 0 60.0 4.000 0.0215 0 0 2.000 1 2.0 2 93 GTATTTTACTTTCCCAGTTT ACTGCCATTTGAACTTAATT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20211039 20211039 T TTTCCCAGTTTAACTGCCATTTGAACTTAATTTTATACATGATTTGAGCTGAAATGAAGAAATACAGTTTTCACCCAACACTGACCACCAATGAGGATTGAATCTACATTTTGGAAGCAAAATTTAGGAGAATCAGCCTCCTTGTAGTCTTTTTTGGTTTGTTTTTGTTTTTGTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGTATGGAGCAATCTCGGTTCACTACAACCTCCGCCTCCCCCCAGGTTCAAGCGATTCTCTTGCCTCAGCCTCCCAAGTAGCTGGTACTACAGGTGCAAGCCACCATGCCCGACTCATTTTTGTATTTTCAGTAGAGATTGGGTTTCACCATGTTGGCCGGGCTGGTCTCGAACTCCTGGCCTCAAGTGACCTGCCCGCCTTGGCCTCCCAAAGTGCTAGGATTACGGGCAGGGGCCACAGCGCCCTGCTGCCTC 98 5 37 58 1 4 T/+465 0.0510 2;2 32.6 1 38.5 1 58.6 10.000 0.0521 0.0510 70 3.000 1 0.8 5 96 TAACCTACTGCGTATTTTAC TTCCCAGTTTAACTGCCATT 20:20156209-20234556 Insertion 0 5-10-2 NA24385_chr_20_20156208_20234556 testbed 20 20178250 20178250 A C 87 85 0 2 49 36 A/C 0.9770 0;2 36.4 1 39.4 1 60.0 84.000 1.0000 0 0 1.000 1 2.3 84 84 CACTCTCACACACACTCATG GTTCACACATATACTCACCC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20178359 20178359 G GT 66 4 29 30 2 2 G/+1 0.0606 2;2 30.4 1 44.0 0 62.8 8.000 0.0678 0 8 9.000 1 1.0 4 59 TTCAAGATAGATTCCCAAGG TTTTTTTTCCTGAAAATTGG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20178359 20178359 G GT 66 4 29 30 2 2 G/+1 0.0606 2;2 29.0 1 42.0 0 60.0 8.000 0.0678 0 8 9.000 1 1.0 4 59 TTCAAGATAGATTCCCAAGG TTTTTTTTCCTGAAAATTGG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20178359 20178360 GT G 71 25 23 22 14 11 T/-1 0.3521 2;2 28.6 1 39.8 1 60.0 24.000 0.3636 0.0423 7 8.000 1 0.5 24 66 TTCAAGATAGATTCCCAAGG TTTTTTTCCTGAAAATTGGT 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20211187 20211187 C CT 59 5 31 22 4 1 C/+1 0.0847 2;2 35.8 1 33.9 1 62.0 4.000 0.0741 0.0169 6 7.000 1 1.0 4 54 AGAATCAGCCTCCTTGTAGT TTTTTTGGTTTGTTTTTGTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20211187 20211187 C CT 59 5 31 22 4 1 C/+1 0.0847 2;2 34.6 1 32.8 1 60.0 4.000 0.0741 0.0169 6 7.000 1 1.0 4 54 AGAATCAGCCTCCTTGTAGT TTTTTTGGTTTGTTTTTGTT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20211135 20211136 AT A 73 2 47 24 0 2 T/-1 0.0274 2;0 39.0 0 42.0 0 60.0 4.000 0.0303 0 1 2.000 1 0 2 66 AACACTGACCACCAATGAGG TGAATCTACATTTTGGAAGC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20177940 20178999 A 85 9 38 47 9 0 C/-1059 0.1059 2;0 1084.0 1 35.4 1 60.0 18.000 0.1047 0.0471 0 0 0 0 9 86 AACCCCATGTAACACTTGCC CATTTGCATCCATAATAAAA 20:20156209-20234556 DEL 0 4-13-2 NA24385_chr_20_20156208_20234556 testbed 20 20177923 20177923 C A 90 3 40 46 1 2 C/A 0.0333 2;2 29.7 1 28.3 1 60.0 2.000 0.0244 0 0 4.000 1 1.0 2 82 ATGCCTGATGCCGATGTAAC CCATGTAACACTTGCCACAT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20210818 20210818 G C 118 3 51 64 3 0 G/C 0.0254 2;0 12.3 1 31.7 1 60.0 2.000 0.0179 0.0169 0 1.000 1 1.3 2 112 AGACAAGTATAAATTTTGAT TAAGTATTGGGTCGATTAAA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20178172 20178172 A AAC 106 2 45 49 2 0 A/+2 0.0189 2;0 24.1 0 43.2 0 65.6 4.000 0.0225 0 15 8.000 2 3.3 2 89 CATTGCCTAGAAGAGTCACA ACACACACACACACAGAGAC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20178172 20178172 A AAC 106 2 45 49 2 0 A/+2 0.0189 2;0 22.0 0 39.5 0 60.0 4.000 0.0225 0 15 8.000 2 3.3 2 89 CATTGCCTAGAAGAGTCACA ACACACACACACACAGAGAC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20178172 20178172 A C 106 2 45 49 0 2 A/C 0.0189 2;0 40.5 1 37.0 1 60.0 4.000 0.0225 0 0 3.000 1 3.0 2 89 CATTGCCTAGAAGAGTCACA ACACACACACACACAGAGAC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20210918 20210918 T TA 76 3 30 42 3 0 T/+1 0.0395 2;0 38.0 1 43.1 0 61.6 6.000 0.0435 0 5 6.000 1 0.3 3 69 ATTACACAGATTACGTACAC AAAAATAGACTGGTATCAGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20210918 20210918 T TA 76 3 30 42 3 0 T/+1 0.0395 2;0 37.0 1 42.0 0 60.0 6.000 0.0435 0 5 6.000 1 0.3 3 69 ATTACACAGATTACGTACAC AAAAATAGACTGGTATCAGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20178712 20178713 GA G 58 2 29 27 2 0 A/-1 0.0345 2;0 32.0 0 42.0 0 60.0 4.000 0.0370 0 1 4.000 1 0 2 54 AGAAGTCCAGAGGGAATGGG AGAAAGAAGAAAAACAGAAA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20211459 20211460 CA C 62 4 26 32 2 2 A/-1 0.0645 2;2 38.0 1 39.5 1 58.2 8.000 0.0656 0 2 3.000 1 0.8 4 61 ACCTGCCCGCCTTGGCCTCC AAGTGCTAGGATTACGGGCA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20178765 20178765 G GTT 58 2 33 19 2 0 G/+2 0.0345 2;0 55.5 0 41.3 1 62.8 4.000 0.0370 0 8 10.000 1 2.1 2 54 GAGATGTAGACTCTGCTCTA TTTTTTTTAGTTTTTGTTTT 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20178765 20178765 G GT 58 2 33 19 1 1 G/+1 0.0345 2;2 40.8 1 38.7 0 62.8 4.000 0.0370 0 8 9.000 1 1.0 2 54 GAGATGTAGACTCTGCTCTA TTTTTTTTAGTTTTTGTTTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20178765 20178765 G GTT 58 2 33 19 2 0 G/+2 0.0345 2;0 53.0 0 39.5 1 60.0 4.000 0.0370 0 8 10.000 1 2.1 2 54 GAGATGTAGACTCTGCTCTA TTTTTTTTAGTTTTTGTTTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20178765 20178765 G GT 58 2 33 19 1 1 G/+1 0.0345 2;2 39.0 1 37.0 0 60.0 4.000 0.0370 0 8 9.000 1 1.0 2 54 GAGATGTAGACTCTGCTCTA TTTTTTTTAGTTTTTGTTTT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20178838 20178839 CT C 83 2 58 22 0 2 T/-1 0.0241 2;0 22.0 1 37.0 1 60.0 4.000 0.0263 0.0120 0 1.000 1 0.5 2 76 ATGGCCCAGCTTTGAACTCA GAGATGGGAAGGTAACAGTT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20211683 20211683 A T 69 2 41 24 0 2 A/T 0.0290 2;0 7.0 0 42.0 0 60.0 4.000 0.0317 0 0 3.000 1 1.0 2 63 TGCAAGAAATTATAAAACAC TTTGGTCTCCTCTTCAAAGG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20211295 20211296 GT G 79 4 35 39 0 4 T/-1 0.0506 2;0 41.0 0 42.0 0 60.0 8.000 0.0571 0 1 2.000 1 0 4 70 CAACCTCCGCCTCCCCCCAG TCAAGCGATTCTCTTGCCTC 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20211286 20211286 T TC 77 10 27 38 4 6 T/+1 0.1299 2;2 35.1 1 42.9 1 62.0 20.000 0.1613 0 6 7.000 1 0.2 10 62 GGTTCACTACAACCTCCGCC CCCCCCAGGTTCAAGCGATT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20211286 20211286 T TC 77 10 27 38 4 6 T/+1 0.1299 2;2 34.0 1 41.5 1 60.0 20.000 0.1613 0 6 7.000 1 0.2 10 62 GGTTCACTACAACCTCCGCC CCCCCCAGGTTCAAGCGATT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20178517 20178518 CT C 61 2 26 32 1 1 T/-1 0.0328 2;2 18.0 0 39.5 1 60.0 4.000 0.0364 0 2 3.000 1 0.5 2 55 TCCCATGTTCTGCCTAGAGT TTGACATTGTCTCATCAGCA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20178591 20178591 A T 69 2 26 41 1 1 A/T 0.0290 2;2 28.0 1 39.5 1 60.0 4.000 0.0323 0 1 3.000 1 1.5 2 62 TATTAATATGTCTATTTATT AACAATCTAAAGTGTGTTAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20211341 20211341 A G 92 3 35 54 0 3 A/G 0.0326 2;0 18.0 1 30.3 1 60.0 2.000 0.0227 0.0217 0 2.000 1 1.7 2 88 TCCCAAGTAGCTGGTACTAC GGTGCAAGCCACCATGCCCG 20:20156209-20234556 SNV 0 0 @@ -939,10 +939,10 @@ NA24385_chr_20_20156208_20234556 testbed 20 20211984 20211984 T G 84 38 19 27 20 NA24385_chr_20_20156208_20234556 testbed 20 20179208 20179209 TG T 89 3 34 51 0 3 G/-1 0.0337 2;0 12.0 0 42.0 0 60.0 6.000 0.0361 0 2 3.000 1 0 3 83 TGAAGCAGTTCCAAATAATT GGTAAGAATTCCCAAATTCT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20179301 20179301 A ATCCCTCTGGTCAGGGCATGTATTAAGAGCTCTTCCAGGCATAAAAACAGGGTGCTGGCTAGGGTTCTGTTTTTCAGTTTGCGAAGTCACGGTCTGAAGTCCAGTGGTGAAGGATTTTAGAAAACCATTTTAGAAGCTCTTAGAAGGGCCGGGGCTATTTTTAGAACTGCAAAAAAGTCATAGGTAAACCATCTATTTATTAAAATGCATCTACAGTTGTTTTTCTGTCTTTGCTTTCCAGTCTAAATTCAATAAATGTATCATTAAAAGTTTTGATTTTACAGTCTAACTCTTCAGATTTAAATGGTTACGATGTCCTTAGTTCATTTCACCAAAACCCCTAAGATTTCATAAATG 106 3 54 26 3 0 A/+356 0.0283 2;0 16.0 1 41.5 1 60.0 6.000 0.0390 0.0283 70 1.000 1 0 3 77 ATGGGGATGGTTTTCTCTGT TCCCTCTGGTCAGGGCATGT 20:20156209-20234556 Insertion 0 3-3-1 NA24385_chr_20_20156208_20234556 testbed 20 20179287 20179287 A C 81 2 50 27 1 1 A/C 0.0247 2;2 5.0 1 34.5 1 60.0 4.000 0.0303 0 0 1.000 1 2.0 2 66 TTTTGGCTCACATTATGGGG TGGTTTTCTCTGTATCCCTC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20212049 20212049 C CT 69 3 29 37 3 0 C/+1 0.0435 2;0 30.6 0 30.9 1 61.2 2.000 0.0323 0 4 5.000 1 1.7 2 62 GGGTGTCCCAGGATCCCAGT TTTTACTTCCCCTGCTGTCC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20212049 20212049 C CT 69 3 29 37 3 0 C/+1 0.0435 2;0 30.0 0 30.3 1 60.0 2.000 0.0323 0 4 5.000 1 1.7 2 62 GGGTGTCCCAGGATCCCAGT TTTTACTTCCCCTGCTGTCC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20212056 20212099 TTCCCCTGCTGTCCTCCGTGCCCTCCTGCTCCTGGCCCTGGTGA T 75 2 36 35 0 2 T/-43 0.0267 2;0 66.0 1 37.4 1 60.0 4.000 0.0303 0.0267 5 2.000 1 1.5 2 66 CCAGGATCCCAGTCTTTTAC TCCCCAGCAGAGCCGAGGAG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20212058 20212058 C G 75 2 36 35 1 1 C/G 0.0267 2;2 5.5 1 27.0 0 60.0 4.000 0.0294 0 0 4.000 1 3.5 2 68 AGGATCCCAGTCTTTTACTT CCCTGCTGTCCTCCGTGCCC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20179342 20179342 T TA 91 2 54 34 2 0 T/+1 0.0220 2;0 47.2 0 43.1 0 61.6 4.000 0.0233 0 5 6.000 1 0 2 86 ATTAAGAGCTCTTCCAGGCA AAAAACAGGGTGCTGGCTAG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20179342 20179342 T TA 91 2 54 34 2 0 T/+1 0.0220 2;0 46.0 0 42.0 0 60.0 4.000 0.0233 0 5 6.000 1 0 2 86 ATTAAGAGCTCTTCCAGGCA AAAAACAGGGTGCTGGCTAG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20211718 20211718 T C 78 2 42 34 1 1 T/C 0.0256 2;2 14.5 1 29.5 1 60.0 4.000 0.0294 0.0128 2 3.000 1 1.5 2 68 CAAAGGACACCAAAAGCAGT TGTGTAAATTCCTATCCTTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20179048 20179051 TTAT ATAA 87 6 36 44 2 4 TTAT/ATAA 0.0690 2;2 9.0 1 36.8 1 60.0 5.000 0.0617 0.0115 1 3.000 1 3.2 5 81 TTGGGCATTTCATTAAATGT ACATTTACCTCAATAGTATG 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20211796 20211796 C A 84 40 23 21 21 19 C/A 0.4762 2;2 34.8 1 38.0 1 60.0 9.000 0.4800 0 0 3.000 1 1.9 36 75 GTGCTTTGCCCAAACTCACT CCTGATATTCCCTAGGATGT 20:20156209-20234556 SNV 0 0 @@ -964,20 +964,20 @@ NA24385_chr_20_20156208_20234556 testbed 20 20179472 20179472 A AAAAAGTCATAGGTAA NA24385_chr_20_20156208_20234556 testbed 20 20179482 20179482 A T 78 3 26 49 3 0 A/T 0.0385 2;0 10.0 0 26.7 1 60.0 2.000 0.0282 0 1 2.000 1 2.7 2 71 TAGAACTGCAAAAAAGTCAT GGTAAACCATCTATTTATTA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20179529 20179530 CT C 91 3 40 48 0 3 T/-1 0.0330 2;0 12.7 1 39.8 1 60.0 6.000 0.0337 0.0220 2 3.000 1 0 3 89 ATCTACAGTTGTTTTTCTGT TTGCTTTCCAGTCTAAATTC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20179595 20179596 CA C 90 2 50 37 2 0 A/-1 0.0222 2;0 60.0 0 42.0 0 60.0 4.000 0.0244 0 0 1.000 1 1.0 2 82 GATTTTACAGTCTAACTCTT GATTTAAATGGTTACGATGT 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20213026 20213026 G GA 45 7 25 11 7 0 G/+1 0.1556 2;0 11.4 1 41.6 1 63.6 14.000 0.1795 0.1111 10 11.000 1 2.3 7 39 ATAAATGCTATAGCAAAATA AAAAAAAAAAGAAGAAGAAG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20213026 20213026 G GA 45 7 25 11 7 0 G/+1 0.1556 2;0 10.7 1 39.3 1 60.0 14.000 0.1795 0.1111 10 11.000 1 2.3 7 39 ATAAATGCTATAGCAAAATA AAAAAAAAAAGAAGAAGAAG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20180226 20180226 T A 69 2 47 19 2 0 T/A 0.0290 2;0 53.0 0 42.0 0 60.0 4.000 0.0317 0 0 1.000 1 2.5 2 63 ACTCTCGTAATTATCTTCAT AGTGTCAGGCATTATCTACA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20180288 20180289 AT A 85 29 36 18 16 13 T/-1 0.3412 2;2 31.9 1 38.7 1 60.0 58.000 0.3766 0.0353 10 11.000 1 0.6 29 77 GTATGTTTGTTTATTTGCTG TTTTTTTTTTCCTCTCTGAC 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20180288 20180288 A AT 82 6 41 27 5 1 A/+1 0.0732 2;2 11.6 1 38.7 1 64.0 12.000 0.0952 0.0610 11 12.000 1 3.4 6 63 GTATGTTTGTTTATTTGCTG TTTTTTTTTTTCCTCTCTGA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20180288 20180288 A AT 82 6 41 27 5 1 A/+1 0.0732 2;2 10.8 1 36.2 1 60.0 12.000 0.0952 0.0610 11 12.000 1 3.4 6 63 GTATGTTTGTTTATTTGCTG TTTTTTTTTTTCCTCTCTGA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20180437 20180437 T A 75 4 40 30 1 3 T/A 0.0533 2;2 58.2 1 37.0 1 60.0 8.000 0.0571 0 0 1.000 1 2.2 4 70 GAACCCCTACGCCCACTCCC GACATCTGCCCTTCATTACT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20212791 20212792 GA G 68 2 30 36 1 1 A/-1 0.0294 2;2 26.5 1 39.5 1 60.0 4.000 0.0323 0.0147 1 2.000 1 0 2 62 GAACTGTCCTCATCTGTGCT AGGAGAGTCCCAGCAGGGGC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20212750 20212750 A T 71 3 33 35 3 0 A/T 0.0423 2;0 8.0 0 42.0 0 60.0 6.000 0.0455 0 1 1.000 1 1.3 3 66 GCCCACCTCTGCTGCCAAGC GTGTTGCAGCCCTGAGGGAG 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20212811 20212811 G GC 64 3 27 33 2 1 G/+1 0.0469 2;2 30.8 1 41.4 1 61.6 6.000 0.0517 0 5 6.000 1 0 3 58 GAAGGAGAGTCCCAGCAGGG CCCCCAGGTCCTGCCAGCCT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20212811 20212811 G GC 64 3 27 33 2 1 G/+1 0.0469 2;2 30.0 1 40.3 1 60.0 6.000 0.0517 0 5 6.000 1 0 3 58 GAAGGAGAGTCCCAGCAGGG CCCCCAGGTCCTGCCAGCCT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20180213 20180213 T A 72 2 46 23 2 0 T/A 0.0278 2;0 40.0 0 42.0 0 60.0 4.000 0.0290 0 0 2.000 1 2.5 2 69 TAGTAATGTAATTACTCTCG AATTATCTTCATTAGTGTCA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20212990 20212990 C CT 44 22 10 13 8 13 C/+1 0.5000 2;2 33.4 1 39.3 1 60.3 21.000 0.5385 0.0682 9 10.000 1 1.4 21 39 CACAAAGATATTCCAGAATC TTTTTTTTTAATTATATAAA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20212990 20212990 C CT 44 22 10 13 8 13 C/+1 0.5000 2;2 31.8 1 37.4 1 57.4 21.000 0.5385 0.0682 9 10.000 1 1.4 21 39 CACAAAGATATTCCAGAATC TTTTTTTTTAATTATATAAA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20212990 20212991 CT C 44 2 17 25 1 1 T/-1 0.0455 2;2 41.5 1 42.0 0 60.0 4.000 0.0476 0 8 9.000 1 0.5 2 42 CACAAAGATATTCCAGAATC TTTTTTTTAATTATATAAAT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20180758 20180758 G T 92 3 40 49 0 3 G/T 0.0326 2;0 12.3 1 30.0 1 60.0 2.000 0.0247 0 0 2.000 1 2.3 2 81 AGCCTAAAGCAGTAGCCACA GACCCTGCAGGGTCATGCCA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20180854 20180854 T A 84 2 43 37 0 2 T/A 0.0238 2;0 30.0 0 32.0 1 60.0 4.000 0.0263 0 0 3.000 1 1.0 2 76 CAGCATATTTTCATTTTCTT CCCTGTCCTCAAAAGCAGAT 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20180875 20180875 T TC 91 2 55 33 1 1 T/+1 0.0220 2;2 25.2 1 35.4 1 61.6 4.000 0.0263 0 5 6.000 1 0.5 2 76 CCCTGTCCTCAAAAGCAGAT CCCCCTTTCAATGATGTTTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20180875 20180875 T TC 91 2 55 33 1 1 T/+1 0.0220 2;2 24.5 1 34.5 1 60.0 4.000 0.0263 0 5 6.000 1 0.5 2 76 CCCTGTCCTCAAAAGCAGAT CCCCCTTTCAATGATGTTTT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20180932 20180933 CA C 101 4 58 38 2 2 A/-1 0.0396 2;2 47.8 1 42.0 0 60.0 8.000 0.0417 0 2 3.000 1 0.5 4 96 GTGGTCATTCGCTGTTAGGA AAGCTGACAGAGAAAACAGA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20180607 20180607 G T 76 2 37 37 1 1 G/T 0.0263 2;2 5.0 1 42.0 1 60.0 4.000 0.0270 0.0132 0 4.000 1 1.0 2 74 TCCCGCGGGCCTGGCAGATG GGTGGCAGTGCTGTCTTCAC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20213350 20213350 C T 91 2 44 45 0 2 C/T 0.0220 2;0 19.0 0 42.0 0 60.0 4.000 0.0235 0 0 2.000 1 1.0 2 85 CTCCTAATTATGGGAAAGTT CTTTTTAATCCATTATTTTT 20:20156209-20234556 SNV 0 0 @@ -988,7 +988,7 @@ NA24385_chr_20_20156208_20234556 testbed 20 20214070 20214070 C G 114 5 62 47 5 NA24385_chr_20_20156208_20234556 testbed 20 20214049 20214049 A C 116 3 65 47 0 3 A/C 0.0259 2;0 5.0 0 40.3 1 60.0 6.000 0.0265 0 0 5.000 1 1.0 3 113 CCTGTTCATTGCGCTGTGCA AAACGGCATGGGAGCGAGGC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20181278 20181279 TA T 96 5 54 36 3 2 A/-1 0.0521 2;2 40.8 1 40.0 1 60.0 10.000 0.0562 0 13 14.000 1 1.6 5 89 TACTCTTTCACTTAAGTAAG AAAAAAAAAAAAATCCCTCA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20181257 20181257 A T 93 4 49 40 0 4 A/T 0.0430 2;0 56.0 0 40.8 1 60.0 8.000 0.0488 0 0 1.000 1 1.0 4 82 TATGGGCTTGTAGTGTTTGT TACTCTTTCACTTAAGTAAG 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20214131 20214131 A AG 98 2 39 53 1 1 A/+1 0.0204 2;2 31.5 1 39.5 1 62.0 4.000 0.0241 0.0102 6 7.000 1 0 2 83 CAGGCAGCACGGACATCCAC GGGGGGCATATGGGAGATGG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20214131 20214131 A AG 98 2 39 53 1 1 A/+1 0.0204 2;2 30.5 1 38.2 1 60.0 4.000 0.0241 0.0102 6 7.000 1 0 2 83 CAGGCAGCACGGACATCCAC GGGGGGCATATGGGAGATGG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20181436 20181436 T G 89 3 41 44 3 0 T/G 0.0337 2;0 6.3 1 23.7 1 60.0 2.000 0.0244 0.0225 0 1.000 1 2.0 2 82 CCTCGCAATACGCTCGGCGC GCAGGAAGGACATCACCCGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20214179 20214179 T C 81 5 30 45 0 5 T/C 0.0617 2;0 8.0 0 42.0 0 60.0 10.000 0.0676 0 0 2.000 1 1.2 5 74 CAGGGCATACGGGACATCAG TCTGGTGCAGAGGCTGGTCT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20214169 20214169 G T 85 2 31 52 0 2 G/T 0.0235 2;0 8.0 0 42.0 0 60.0 4.000 0.0241 0 0 3.000 1 3.5 2 83 TGGACATCCACAGGGCATAC GGACATCAGTTCTGGTGCAG 20:20156209-20234556 SNV 0 0 @@ -1006,26 +1006,26 @@ NA24385_chr_20_20156208_20234556 testbed 20 20181172 20181172 T A 70 4 25 40 2 2 NA24385_chr_20_20156208_20234556 testbed 20 20213961 20213962 CA C 114 2 69 42 0 2 A/-1 0.0175 2;0 14.0 0 42.0 0 60.0 4.000 0.0187 0 1 2.000 1 0 2 107 CTGATCTCAGAGCTCAACCG ATGGACAGGTTTGTGATTGT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20181792 20181941 CAAAATTCTTTTATTATTAGATTTAACAGACATAGCATTACTCTGCTGGTTTGCTATAAAAGCTTCTGAATGCTTCTCTCGGTCTCTCTTACTCATATCTTCATAGACTTGTAATAGTTTGCACATGGGCACCTGTTCCAGAACACAGAT C 59 4 24 35 4 0 A/-149 0.0678 2;0 200.0 1 42.0 1 60.0 8.000 0.0656 0.0339 0 2.000 1 0 4 61 GATTAGAAAGCAAAGACAGA TGAGTGGCACTGGAATGCCC 20:20156209-20234556 Deletion 0 2-2-2 NA24385_chr_20_20156208_20234556 testbed 20 20181777 20181778 GA G 77 3 33 41 3 0 A/-1 0.0390 2;0 46.7 1 42.0 0 60.0 6.000 0.0395 0 2 3.000 1 0.7 3 76 TTCCTGGGAAAACAAGATTA AAGCAAAGACAGACAAAATT 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20214540 20214540 C CT 97 6 47 39 5 1 C/+1 0.0619 2;2 25.8 1 43.7 0 62.4 12.000 0.0698 0 7 8.000 1 1.9 6 86 GGGAAGATCAGCTTATTGTC TTTTTTTGTGGGTGCTTTGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20214540 20214540 C CT 97 6 47 39 5 1 C/+1 0.0619 2;2 24.8 1 42.0 0 60.0 12.000 0.0698 0 7 8.000 1 1.9 6 86 GGGAAGATCAGCTTATTGTC TTTTTTTGTGGGTGCTTTGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20181882 20181882 A T 67 3 37 27 2 1 A/T 0.0448 2;2 33.3 1 31.7 1 60.0 2.000 0.0357 0 0 1.000 1 1.7 2 56 TGCTTCTCTCGGTCTCTCTT CTCATATCTTCATAGACTTG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20214710 20214710 T G 116 8 61 47 2 6 T/G 0.0690 2;2 10.0 0 41.4 1 60.0 16.000 0.0708 0 0 1.000 1 1.0 8 113 AATAATGACATTGGTACCTG CTTGGTTTGCATTCTTTCAA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20181904 20181904 A T 72 2 44 26 2 0 A/T 0.0278 2;0 64.0 0 34.5 1 60.0 4.000 0.0286 0 1 2.000 1 2.0 2 70 TCATATCTTCATAGACTTGT ATAGTTTGCACATGGGCACC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20181960 20181960 C G 89 2 43 44 2 0 C/G 0.0225 2;0 23.0 1 29.5 1 60.0 4.000 0.0260 0 0 3.000 1 4.0 2 77 ATTGAGTGGCACTGGAATGC CACGCACTCAGCACCCAGCT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20214728 20214729 CA C 104 2 58 44 2 0 A/-1 0.0192 2;0 30.0 0 42.0 0 60.0 4.000 0.0194 0 2 3.000 1 0 2 103 TGTCTTGGTTTGCATTCTTT AACCAAGCTGAAAACAAAGC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20214320 20214321 TG T 107 2 43 61 2 0 G/-1 0.0187 2;0 28.0 0 42.0 0 60.0 4.000 0.0194 0 1 2.000 1 0 2 103 TAAGGATCCAGAACTCACCC GTGTCACTAATCACAATGGG 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20181624 20181624 C CA 92 2 39 49 0 2 C/+1 0.0217 2;0 42.4 0 43.4 0 62.0 4.000 0.0225 0 6 7.000 1 0 2 89 TCTTTATATTTGTAAAATAA AAAAAATTTATATCATTGTA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20181624 20181624 C CA 92 2 39 49 0 2 C/+1 0.0217 2;0 41.0 0 42.0 0 60.0 4.000 0.0225 0 6 7.000 1 0 2 89 TCTTTATATTTGTAAAATAA AAAAAATTTATATCATTGTA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20181567 20181568 CA C 87 3 40 44 0 3 A/-1 0.0345 2;0 59.0 0 42.0 0 60.0 6.000 0.0349 0 0 1.000 1 0 3 86 GATGGGGAGGGCACCTCCAT GACCAACTCAGAGGCAGCTT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20181583 20181583 C A 91 2 41 48 1 1 C/A 0.0220 2;2 13.0 1 42.0 0 60.0 4.000 0.0225 0 1 1.000 1 2.0 2 89 CCATCAGACCAACTCAGAGG AGCTTTGTGTCTTACATTCA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20214443 20214443 T A 94 2 35 56 2 0 T/A 0.0213 2;0 62.0 0 42.0 0 60.0 4.000 0.0247 0 0 2.000 1 1.0 2 81 TCGTTTCAGTATAACTTATC CCTCATACCCACATTAGAGA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20181663 20181663 G A 93 50 20 23 28 22 G/A 0.5376 2;2 35.5 1 39.0 1 60.0 15.667 0.5222 0 0 2.000 2 1.5 47 90 TAAATTTATATGTGAGTAGA ACTGTTCATATAAAGCAGGA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20214517 20214517 C CG 97 4 50 41 2 2 C/+1 0.0412 2;2 61.6 0 41.8 1 61.6 8.000 0.0482 0 5 6.000 1 1.8 4 83 GCAACATTAGGCCTTTTCGA GGGGGAAGATCAGCTTATTG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20214517 20214517 C CG 97 4 50 41 2 2 C/+1 0.0412 2;2 60.0 0 40.8 1 60.0 8.000 0.0482 0 5 6.000 1 1.8 4 83 GCAACATTAGGCCTTTTCGA GGGGGAAGATCAGCTTATTG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20214515 20214515 G A 93 42 25 24 25 17 G/A 0.4516 2;2 40.1 1 39.6 1 58.6 41.000 0.4659 0.0108 0 1.000 1 1.8 41 88 GAGCAACATTAGGCCTTTTC ACGGGGGAAGATCAGCTTAT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20181727 20181727 T A 86 2 46 38 0 2 T/A 0.0233 2;0 30.0 0 42.0 0 60.0 4.000 0.0238 0 0 1.000 1 1.0 2 84 TTTAATTAATGTGCAATTAG CATGGACTGATAGTTTTGTA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20181702 20181703 CT C 97 4 50 43 2 2 T/-1 0.0412 2;2 30.5 1 42.0 0 60.0 8.000 0.0435 0 6 7.000 1 0.5 4 92 GACTTCTCAATCTATCTGTC TTTTTTAATTAATGTGCAAT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20215056 20215056 T TTACTGAAACTTTGGCATAGACGATGATGGAGAAGAAGCAAGGGTTAGGTAAGAAGGCTGTGGGGAGAGGATTTTGTGGGTTTCTTGCAGTTCTGAAGAGGACACAGGTGTACTATCAGAAAGTTTTGCTGGAAAAGAGATGGCATTTAAGGACCTTGTCTTAGCAAATACTTTATTTCTACTTTGGGATGGAGATAAGGTTAGAATCAGTAGTTTTCGAAACATAGTCTGTGGCCCAGCACCATCAGCATTACCTGGGAAGCTGTCAGAGGTGGGGATACTTAGGCCCCACTCTCCAGGGACTGAATCTGAAACCTGGGGGTAGGGCCAGGCTCTGCTTTCCCAGCCCTCCAGGGAAGGCGGCAGGTCAAGGAAGTCAGAAGCGACGGTGGAGTGGAGAGGGCCCAGGAGAGTGATTCCAAAACGCAGAACTTCAGTCTCCTCACCTGTGCTGCAGGGAA 86 2 41 45 0 2 T/+460 0.0233 2;0 41.0 1 35.7 1 60.0 4.000 0.0238 0.0233 70 4.000 1 0 2 84 AATATTCTTGAAGTTGCCTT TACTGAAACTTTGGCATAGA 20:20156209-20234556 Insertion 0 2-4-2 NA24385_chr_20_20156208_20234556 testbed 20 20182434 20182434 T G 43 2 19 22 2 0 T/G 0.0465 2;0 15.0 0 37.0 0 60.0 4.000 0.0488 0 0 1.000 1 4.0 2 41 AGGGTCAGGATGAGAGATGC GACCTTCTGCAGTCAGTGCT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20214819 20214820 GA G 90 2 56 31 1 1 A/-1 0.0222 2;2 22.5 1 42.0 0 60.0 4.000 0.0250 0 1 3.000 1 0.5 2 80 GAGCAGGGCCGTGTGACAGG AGTGAGGATAGCCACAAAGC 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20214904 20214904 C CAG 69 3 22 41 0 3 C/+2 0.0435 2;0 50.2 0 44.0 0 62.8 6.000 0.0492 0 8 5.000 2 0 3 61 GGTCAGAGAATGGCCGTGGG AGAGAGAGGCAGACAGGAGA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20214904 20214904 C CAG 69 3 22 41 0 3 C/+2 0.0435 2;0 48.0 0 42.0 0 60.0 6.000 0.0492 0 8 5.000 2 0 3 61 GGTCAGAGAATGGCCGTGGG AGAGAGAGGCAGACAGGAGA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20215567 20215568 CA C 64 2 38 24 2 0 A/-1 0.0312 2;0 18.0 0 42.0 0 60.0 4.000 0.0323 0 2 3.000 1 0.5 2 62 CTGAGCATACAGTCAGGTAG AATGTCAAGCATCTGTCCAA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20182855 20182855 T A 69 2 34 31 1 1 T/A 0.0290 2;2 45.0 1 42.0 0 60.0 4.000 0.0323 0 0 1.000 1 1.5 2 62 TTCAGCACAAAGCCAAGATG ATTGTTGAAACCCAGGGTCC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20215711 20215712 CT C 59 2 24 32 0 2 T/-1 0.0339 2;0 15.0 0 42.0 0 60.0 4.000 0.0357 0 0 4.000 1 0 2 56 GGCTGGGGAGCTGGAGTCTC CCACGTGGAGGATGCCCTCT 20:20156209-20234556 Deletion 0 0 @@ -1036,32 +1036,32 @@ NA24385_chr_20_20156208_20234556 testbed 20 20182621 20182623 TCC T 41 3 17 21 0 NA24385_chr_20_20156208_20234556 testbed 20 20215462 20215904 A 69 2 23 35 0 2 A/ 0.0290 2;0 66.0 1 37.2 1 60.0 4.000 0.0333 0.0290 0 3.000 1 0 2 60 CGGTGGAGTGGAGAGGGCCC TTCTTGAGACTCCCAAACTC 20:20156209-20234556 INV 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20182780 20182781 CT C 70 2 41 27 0 2 T/-1 0.0286 2;0 41.5 1 39.5 1 41.0 4.000 0.0303 0 3 4.000 1 0.5 2 66 CATTGCTTACATTGAGTAAC TTTCCATGTTTATCTCAGTA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183343 20183344 GA G 66 2 27 37 0 2 A/-1 0.0303 2;0 11.0 0 37.0 1 60.0 4.000 0.0323 0 0 2.000 1 1.5 2 62 GTAGCAAACTGTGCAAGGCT GCAACTGTCATTACCAAATG 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20183400 20183400 G GC 54 6 18 25 4 2 G/+1 0.1111 2;2 27.4 1 34.1 1 62.4 5.000 0.1220 0.0370 7 8.000 1 3.3 5 41 TAGGTTTCACATCTCCCACC CCCCCCCGCCACAACCCCTC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20183400 20183400 G GC 54 6 18 25 4 2 G/+1 0.1111 2;2 26.3 1 32.8 1 60.0 5.000 0.1220 0.0370 7 8.000 1 3.3 5 41 TAGGTTTCACATCTCCCACC CCCCCCCGCCACAACCCCTC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183474 20183475 AT A 68 2 36 28 0 2 T/-1 0.0294 2;0 54.0 0 42.0 0 60.0 4.000 0.0323 0 2 3.000 1 1.0 2 62 TCCCTCACCATGTCCATATC TTCTCTTGCTGGCCACTCGT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183472 20183472 T A 64 4 33 27 2 2 T/A 0.0625 2;2 22.5 1 37.0 0 60.0 8.000 0.0690 0 0 1.000 1 2.2 4 58 GCTCCCTCACCATGTCCATA CATTTCTCTTGCTGGCCACT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183477 20183477 T TCTCTTGCTGGCCACTCGTCTTTCATACCTTTTATCCTATTTAAAGCATCTTAGAGTGACCATCCAGTCCCTACCTTTCACCTAGGAAGCCAATCTTCAAGGGAACAGATCACTCCAGGCATGAGTAATGGGATAGAAAGCATTTCATCTCGGTAGGTTGCCAATTTGAATCTGGCACAAGGAAGCAGTGATTGAAATTCATCACTGCATGGCAGGGAAATATGCCCTCGCTCCCACCCCAAGGCCTTCCTAATTCCTGCCTGGTTTGGACGATCAGTGTCCCGGCCACAACACCTTCCCCGTCGTTTCTATTAATTGACAGCCTACCCCGCAGCAGGTCATAAAAAAGAGCCTAGAAAACATAAATGATTTTCATCACACATTTCAGAATCAGGCCTCAAAGATTCATAGTAATGTCTCCACAGTCAACCAGTGTGAATGCATGGGTAAGAGAGAGGGCTTTTTCCTGACCAAGACCGTAATTGACATCATAGACCTGAAAGATTCTTTTCTGAGCTTGAATG 75 3 37 31 3 0 T/+523 0.0400 2;0 39.0 1 37.1 1 60.0 6.000 0.0448 0.0400 70 3.000 1 1.0 3 67 CTCACCATGTCCATATCATT CTCTTGCTGGCCACTCGTCT 20:20156209-20234556 Insertion 0 3-8-1 -NA24385_chr_20_20156208_20234556 testbed 20 20216253 20216253 T TTCCTCAGCTCTGCACCTGCCAGCCATTTTATTTCCTCCCTGCGGAGGGAGGATTAGGGCCATAATTCTTTTATCTTGGCGCACATAAAATGATGCACAAGAGGATTGAGGGAATAAGGACATATCAAACTGCCCCCCAACTTACAGCATTTGATGTTGGGTGGAAATTTGGAAGGGAAGCCCAGAAACAGCCCCGCCTGAAAACACAGGCATGAGGGCCCTCCAGTAGAGGTGACAGGTGGTCCTCGTTGCTGGGGAGTGGGATCCCAC 63 2 20 25 1 1 T/+269 0.0317 2;2 29.6 1 44.8 1 69.6 4.000 0.0488 0.0317 25 2.000 1 0 2 41 AGCTGTGCACCCTTTCCCAC TCCTCAGCTCTGCACCTGCC 20:20156209-20234556 Insertion 0 2-0-0 +NA24385_chr_20_20156208_20234556 testbed 20 20216253 20216253 T TTCCTCAGCTCTGCACCTGCCAGCCATTTTATTTCCTCCCTGCGGAGGGAGGATTAGGGCCATAATTCTTTTATCTTGGCGCACATAAAATGATGCACAAGAGGATTGAGGGAATAAGGACATATCAAACTGCCCCCCAACTTACAGCATTTGATGTTGGGTGGAAATTTGGAAGGGAAGCCCAGAAACAGCCCCGCCTGAAAACACAGGCATGAGGGCCCTCCAGTAGAGGTGACAGGTGGTCCTCGTTGCTGGGGAGTGGGATCCCAC 63 2 20 25 1 1 T/+269 0.0317 2;2 25.5 1 38.6 1 60.0 4.000 0.0488 0.0317 25 2.000 1 0 2 41 AGCTGTGCACCCTTTCCCAC TCCTCAGCTCTGCACCTGCC 20:20156209-20234556 Insertion 0 2-0-0 NA24385_chr_20_20156208_20234556 testbed 20 20216306 20216306 T A 72 2 36 34 2 0 T/A 0.0278 2;0 21.0 0 42.0 0 60.0 4.000 0.0308 0 0 2.000 1 3.5 2 65 TCCTCCCTGCGGAGGGAGGA TAGGGCCATAATTCTTTTAT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20216294 20216297 GCGG CCGC 69 6 31 32 6 0 GCGG/CCGC 0.0870 2;0 12.0 0 42.0 0 60.0 12.000 0.0968 0 0 1.000 1 3.0 6 62 AGCCACTTTATTTCCTCCCT AGGGAGGATTAGGGCCATAA 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183529 20183529 A T 67 3 38 26 1 2 A/T 0.0448 2;2 6.3 1 31.7 1 60.0 2.000 0.0345 0.0299 0 2.000 2 2.7 2 58 TATCCTATTTAAAGCATCTT GAGTGACCATCCAGTCCCTA 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183499 20183499 T TCATACCTTTTATCCTATTTAAAGCATCTTAGAGTGACCATCCAGTCCCTACCTTTCACCTAGGAAGCCAATCTTCAAGGGAACAGATCACTCCAGGCATGAGTAATGGGATAGAAAGCATTTCATCTCGGTAGGTTGCCAATTTGAATCTGGCACAAGGAAGCAGTGATTGAAATTCATCACTGCATGGCAGGGAAATATGCCCTCGCTCCCACCCCAAGGCCTTCCTAATTCCTGCCTGGTTTGGACGATCAGTGTCCCGGCCACAACACCTTCCCCGTCGTTTCTATTAATTGACAGCCTACCCCAC 73 3 39 33 1 2 T/+309 0.0411 2;2 37.0 1 40.3 1 60.0 6.000 0.0435 0.0411 70 3.000 1 0.3 3 69 TCTTGCTGGCCACTCGTCTT CATACCTTTTATCCTATTTA 20:20156209-20234556 Insertion 0 3-0-0 -NA24385_chr_20_20156208_20234556 testbed 20 20183144 20183144 T TA 59 2 32 25 0 2 T/+1 0.0339 2;0 50.3 0 38.0 1 61.6 4.000 0.0357 0 5 6.000 1 2.1 2 56 CATGGAATGGGCCTCGGTAT AAAAAGTTAAAATGCTAAAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20183144 20183144 T TA 59 2 32 25 0 2 T/+1 0.0339 2;0 49.0 0 37.0 1 60.0 4.000 0.0357 0 5 6.000 1 2.1 2 56 CATGGAATGGGCCTCGGTAT AAAAAGTTAAAATGCTAAAT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20215889 20215890 TA T 65 2 33 29 2 0 A/-1 0.0308 2;0 66.0 0 42.0 0 60.0 4.000 0.0392 0 2 3.000 1 0 2 51 TCCTTCATAGAAACTTACAT AACTCTCCCCTCCTTTCTTG 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183108 20183129 TCGAGACCATAATCCCCATGGA CCGAGGCCCATTCC 68 3 38 27 2 1 T/-22iCCGAGGCCCATTCC 0.0441 2;2 15.0 1 40.8 1 60.0 6.000 0.0476 0.0441 0 2.000 1 1.0 3 63 TTTAATCACAGGATTATTTA ATGGGCCTCGGTATTAAAAA 20:20156209-20234556 Complex 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183173 20183174 TA T 48 2 29 17 0 2 A/-1 0.0417 2;0 72.0 0 39.5 1 60.0 4.000 0.0500 0 3 4.000 1 2.0 2 40 AAAATGCTAAATTATATTAT AAATTATTTTTCTCTTTTTA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20216636 20216636 T TAATCCAACACTTACCAGTATAGTAAGACATAGGCTTGAAAAAAATGGTTTGAATTCTCCTTTTTATTTTAAGAACTTGTGGTGGAGGAAAATGTTGTGAATCACCTTTTGAGATTTTAGGGTTAATATTAAGTAACTGTTTCTATAAGCAACAGATTGCAAAAGTTCCAGGCTCTACAATTCTGCACATCACAGCCACTTGGATAGGGATGGGGAGG 81 2 32 32 1 1 T/+217 0.0247 2;2 45.5 1 40.5 1 60.0 4.000 0.0317 0.0247 70 2.000 1 0 2 63 GATAATGCCTTTCAAACAGA AATCCAACACTTACCAGTAT 20:20156209-20234556 Insertion 0 2-12-2 NA24385_chr_20_20156208_20234556 testbed 20 20216598 20216598 T A 75 2 30 43 0 2 T/A 0.0267 2;0 28.0 0 37.0 1 60.0 4.000 0.0274 0 0 2.000 1 1.0 2 73 CTGGAGACCAGGTTTCTCTC AAGTGTACTTCTCTGAAGAT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183820 20183820 A T 64 6 31 27 3 3 A/T 0.0938 2;2 53.5 1 42.0 0 60.0 12.000 0.0968 0 2 6.000 1 1.0 6 62 CTACCCCGCAGCAGGTCATA AAAAGAGCCTAGAAAACATA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20216695 20216695 C CT 56 2 27 27 1 1 C/+1 0.0357 2;2 34.9 1 43.1 0 61.6 4.000 0.0385 0 5 6.000 1 1.5 2 52 AAAAAATGGTTTGAATTCTC TTTTTATTTTAAGAACTTGT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20216695 20216695 C CT 56 2 27 27 1 1 C/+1 0.0357 2;2 34.0 1 42.0 0 60.0 4.000 0.0385 0 5 6.000 1 1.5 2 52 AAAAAATGGTTTGAATTCTC TTTTTATTTTAAGAACTTGT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183920 20183920 T G 74 3 39 32 3 0 T/G 0.0405 2;0 31.3 1 28.3 1 60.0 2.000 0.0290 0.0135 0 3.000 1 2.7 2 69 AGTCAACCAGTGTGAATGCA GGGTAAGAGAGAGGGCTTTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183983 20183984 CT C 75 2 42 31 1 1 T/-1 0.0267 2;2 43.5 1 42.0 0 60.0 4.000 0.0267 0 3 4.000 1 0.5 2 75 CATCATAGACCTGAAAGATT TTTCTGAGCTTGAATGAGCC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183990 20183990 G T 74 2 40 32 2 0 G/T 0.0270 2;0 72.0 0 42.0 0 60.0 4.000 0.0278 0 0 1.000 1 1.0 2 72 GACCTGAAAGATTCTTTTCT AGCTTGAATGAGCCATCTTG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183966 20183966 C G 73 40 19 14 23 17 C/G 0.5479 2;2 34.2 1 39.7 1 60.0 80.000 0.5634 0.0274 0 1.000 1 1.3 40 71 ACCAAGACCGTAATTGACAT ATAGACCTGAAAGATTCTTT 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20184049 20184050 GT G 64 2 32 30 2 0 T/-1 0.0312 2;0 59.0 1 37.0 1 60.0 4.000 0.0328 0 4 5.000 1 1.0 2 61 GGAGAGTTACTCTCATGGAA TTTTATTAGATGACTCGTCA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20216776 20216776 T TTCTATAAGCAACAGATTGCAAAAGTTCCAGGCTCTACAATTCTGCACATCACAGCCACTTGAACTTTTGCAATCTG 80 5 27 18 2 2 T/+76 0.0625 2;2 60.8 1 41.5 1 67.2 10.000 0.1087 0.0500 61 3.000 1 0 5 46 GGTTAATATTAAGTAACTGT TCTATAAGCAACAGATTGCA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20216776 20216776 T TTCTATAAGCAACAGATTGCAAAAGTTCCAGGCTCTACAATTCTGCACATCACAGCCACTTGAACTTTTGCAATCTG 80 5 27 18 2 2 T/+76 0.0625 2;2 47.7 1 32.6 1 52.8 10.000 0.1087 0.0500 61 3.000 1 0 5 46 GGTTAATATTAAGTAACTGT TCTATAAGCAACAGATTGCA 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183590 20183591 TC T 70 2 30 38 0 2 C/-1 0.0286 2;0 26.0 0 27.0 0 60.0 4.000 0.0308 0 1 2.000 1 1.0 2 65 TCTTCAAGGGAACAGATCAC CAGGCATGAGTAATGGGATA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183563 20183563 A AAGCCAATCTTCAAGGGAACAGATCACTCCAGGCATGAGTAATGGGATAGAAAGCATTTCATCTCGGTAGGTTGCCAATTTGAATCTGGCACAAGGAAGCAGTGATTGAAATTCATCACTGCATGGCAGGGAAATATGCCCTCGCTCCCACCCCAAGGCCTTCCTAATTCCTGCCTGGTTTGGACGATCAGTGTCCCGGCCACAACACCTTCCCCGTCGTTTCTATTAATTGACAGCCTACCCCGCAGCAGGTCATAAAAAAGAGCCTAGAAAACATAAATGATTTTCATCACACATTTCAGAATCAGGCCTCAAAGATTCATAGTAATGTCTCCACAGTCAACCAGTGTGAATGCATGGGTAAGAG 68 2 33 28 2 0 A/+366 0.0294 2;0 40.0 1 33.5 1 60.0 4.000 0.0377 0.0294 70 3.000 2 0 2 53 GTCCCTACCTTTCACCTAGG AGCCAATCTTCAAGGGAACA 20:20156209-20234556 Insertion 0 2-0-0 -NA24385_chr_20_20156208_20234556 testbed 20 20216384 20216384 G GC 52 4 29 19 4 0 G/+1 0.0769 2;0 41.3 1 34.4 1 62.0 3.000 0.0600 0.0192 6 7.000 1 1.6 3 50 GAATAAGGACATATCAAACT CCCCCCAACTTACAGCATTT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20216384 20216384 G GC 52 4 29 19 4 0 G/+1 0.0769 2;0 40.0 1 33.2 1 60.0 3.000 0.0600 0.0192 6 7.000 1 1.6 3 50 GAATAAGGACATATCAAACT CCCCCCAACTTACAGCATTT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183685 20183685 A T 77 3 29 45 3 0 A/T 0.0390 2;0 9.0 0 40.3 1 60.0 6.000 0.0429 0 0 1.000 1 1.3 3 70 TGATTGAAATTCATCACTGC TGGCAGGGAAATATGCCCTC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20183807 20183807 G A 64 36 10 17 22 14 G/A 0.5625 2;2 31.9 1 38.9 1 60.0 17.000 0.5862 0 0 1.000 1 1.7 34 58 ATTAATTGACAGCCTACCCC CAGCAGGTCATAAAAAAGAG 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20217151 20217151 T C 90 3 51 35 2 1 T/C 0.0333 2;2 37.3 1 31.7 1 60.0 2.000 0.0238 0 0 3.000 1 4.0 2 84 CTTCTAAGTCACATCATTAC TTGGGGCTTACCAGGCCTAA 20:20156209-20234556 SNV 0 0 @@ -1079,17 +1079,17 @@ NA24385_chr_20_20156208_20234556 testbed 20 20217285 20217285 T A 103 2 54 47 1 NA24385_chr_20_20156208_20234556 testbed 20 20184124 20184125 AT A 79 2 35 42 0 2 T/-1 0.0253 2;0 37.0 0 42.0 0 60.0 4.000 0.0256 0 4 5.000 1 0 2 78 AAAATTATTTTATTTCTTTA TTTTAGTTTTTGTTGGTACA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20216938 20216939 AT A 83 3 33 47 0 3 T/-1 0.0361 2;0 18.0 0 37.0 1 60.0 6.000 0.0380 0 4 5.000 1 0.7 3 79 GTTTCAGGAATATGTACAGT TTTTAATAGAATCCCCAGGT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20184156 20184156 C T 81 2 33 46 1 1 C/T 0.0247 2;2 17.0 1 42.0 0 60.0 4.000 0.0267 0 0 1.000 1 1.0 2 75 TGTTGGTACACAGTAGGTAT GATGTTTATAGGGTACATGA 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20216990 20216990 A AT 84 2 37 42 1 1 A/+1 0.0238 2;2 45.2 1 43.1 0 61.6 4.000 0.0247 0 5 6.000 1 0 2 81 TGCAGGTGGGTTTAGGAGCC TTTTTATAGACATTTGCTCA 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20217044 20217044 T TC 71 2 34 35 2 0 T/+1 0.0282 2;0 15.9 1 40.6 1 61.6 4.000 0.0299 0 5 6.000 1 0.5 2 67 CATCTATAAGGAAACCTATT CCCCCTGTAATTGCTCATTG 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20216990 20216990 A AT 84 2 37 42 1 1 A/+1 0.0238 2;2 44.0 1 42.0 0 60.0 4.000 0.0247 0 5 6.000 1 0 2 81 TGCAGGTGGGTTTAGGAGCC TTTTTATAGACATTTGCTCA 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20217044 20217044 T TC 71 2 34 35 2 0 T/+1 0.0282 2;0 15.5 1 39.5 1 60.0 4.000 0.0299 0 5 6.000 1 0.5 2 67 CATCTATAAGGAAACCTATT CCCCCTGTAATTGCTCATTG 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20184268 20184268 A G 93 2 40 50 2 0 A/G 0.0215 2;0 6.0 0 42.0 0 60.0 4.000 0.0227 0 0 2.000 1 1.5 2 88 AGTATTTATCCTGAATGAGT TTATGATCAGGAAAACACTC 20:20156209-20234556 SNV 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20184865 20184865 T TGATCTTGTTTTTTTCTGGTTGCTTATTAATGATGGTCTGATTAAATCTCAACTAATGAATTCTTTGGAGGCCTCCATTTGGATTCTGTGCATTCATTTCTCCACATTTTTTCTTTGTCCTTCTACAAAGAAAAATGACGGCTTATGGAGCCCCTCCCCCTCAGAGCTAAGTGATGGCCCTGCTTTTTCCTGGTATGTGATCTCTC 116 8 52 57 4 4 T/+205 0.0690 2;2 31.5 1 37.8 1 60.0 16.000 0.0769 0.0690 70 3.000 2 0.8 8 104 GAGCAATCATACTTTCAGAG GATCTTGTTTTTTTCTGGTT 20:20156209-20234556 Insertion 0 8-6-2 NA24385_chr_20_20156208_20234556 testbed 20 20217631 20217632 AT A 64 3 32 29 0 3 T/-1 0.0469 2;0 14.0 0 42.0 0 60.0 6.000 0.0484 0 2 3.000 1 0 3 62 AGATAAAAACATCATTAATC TTCCCCTAAATTATAAAGGA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20184872 20184874 GTT G 117 2 55 60 2 0 T/-2 0.0171 2;0 45.5 1 42.0 0 60.0 4.000 0.0174 0 5 7.000 1 2.5 2 115 CATACTTTCAGAGTGATCTT TTTTTCTGGTTGCTTATTAA 20:20156209-20234556 Deletion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20184872 20184872 G GT 120 6 56 53 4 2 G/+1 0.0500 2;2 34.0 1 41.9 1 62.4 12.000 0.0545 0 7 8.000 1 1.4 6 110 CATACTTTCAGAGTGATCTT TTTTTTTCTGGTTGCTTATT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20184872 20184872 G GT 120 6 56 53 4 2 G/+1 0.0500 2;2 32.7 1 40.3 1 60.0 12.000 0.0545 0 7 8.000 1 1.4 6 110 CATACTTTCAGAGTGATCTT TTTTTTTCTGGTTGCTTATT 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20217614 20217615 TA T 62 3 28 31 0 3 A/-1 0.0484 2;0 30.0 0 42.0 0 60.0 6.000 0.0500 0 4 5.000 1 0 3 60 TTTTACTTCCTAGACATAGA AAAACATCATTAATCATTTC 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20185004 20185004 G T 79 40 20 19 17 23 G/T 0.5063 2;2 31.0 1 40.5 1 60.0 80.000 0.5195 0 0 2.000 1 1.5 40 77 CTTCTACAAAGAAAAATGAC GCTTATGGAGCCCCTCCCCC 20:20156209-20234556 SNV 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20217744 20217744 A AT 73 5 45 21 5 0 A/+1 0.0685 2;0 47.1 1 41.3 1 62.0 10.000 0.0794 0 6 7.000 1 0.8 5 63 CAAGAATGGCATGCATTTTC TTTTTTCAGTAAGGATTTAT 20:20156209-20234556 Insertion 0 0 -NA24385_chr_20_20156208_20234556 testbed 20 20184970 20184970 A AT 90 3 47 38 3 0 A/+1 0.0333 2;0 75.4 0 43.4 0 62.0 6.000 0.0380 0 6 7.000 1 0 3 79 CTGTGCATTCATTTCTCCAC TTTTTTCTTTGTCCTTCTAC 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20217744 20217744 A AT 73 5 45 21 5 0 A/+1 0.0685 2;0 45.6 1 40.0 1 60.0 10.000 0.0794 0 6 7.000 1 0.8 5 63 CAAGAATGGCATGCATTTTC TTTTTTCAGTAAGGATTTAT 20:20156209-20234556 Insertion 0 0 +NA24385_chr_20_20156208_20234556 testbed 20 20184970 20184970 A AT 90 3 47 38 3 0 A/+1 0.0333 2;0 73.0 0 42.0 0 60.0 6.000 0.0380 0 6 7.000 1 0 3 79 CTGTGCATTCATTTCTCCAC TTTTTTCTTTGTCCTTCTAC 20:20156209-20234556 Insertion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20217738 20217739 AT A 73 2 51 20 0 2 T/-1 0.0274 2;0 60.0 0 37.0 1 60.0 4.000 0.0299 0 3 4.000 1 0 2 67 ACATTTCAAGAATGGCATGC TTTCATTTTTTCAGTAAGGA 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20185053 20185086 CCTGGTATGTGATCTCTCAGGAAGATGTCACTCA C 70 2 30 38 0 2 C/-33 0.0286 2;0 47.0 0 42.0 0 60.0 4.000 0.0303 0 4 2.000 1 0 2 66 AAGTGATGGCCCTGCTTTTT CTGGCATTCAGTTACCCTTT 20:20156209-20234556 Deletion 0 0 NA24385_chr_20_20156208_20234556 testbed 20 20184593 20184593 T TTTGAGAAAAAGGCACTGCTTCCTTTCCAGGAATGGGAGTTTACACAACTGTTATTTGTCATATTACACTCCAGAAAACCTGCTTTGAACTTAAAGAGCCCCTCCCATTGCCTCAATGTCAATAGTTGCTCCCCATCATCCACTTCAGTCACTTCAGCTCTTCATCTTGGTTTATTGTGTTCATAGAATTGTAGCGTGAACTCACCTCTCTCTCAGTTATTTTCAGAACTAAATCAACCCTTCATCCTTCCTGAGCAATCATACTTTCAGAGTGATCTTGTTTTTTTCTGGTTGCTTATTAATGATGGTCTGATTAAATCTCAACTAATGAATTCTTTGGAGGCCTCCATTTGGATTCTGTGCATTCATTTCTCCACATTTTTTCTTTGTCCTTCTACAAAGAAAAATGACGGCTTATGGAGCCCCTCCCCCTCAGAGCTAAGTGATGGCCCTGCTTTTTCCTGGTATGTGATCTCTCAGGAAGATGTCACTCACTGGCATTCAGTTACCCTTTGAATTGCCCCTTTTCATCTGGCTGTTCTTCCCAGTCCAGCTATAATTACCATCTGATGGACTGTTACTGGATACTGTTTCACTTGTGCATCTGCTGCCCTAGGAAATTGCATTATTCTCCCAGCACCTGCTAGATTTTCCCCAGCTTTATTGTTTCCCAGCCCCTTCCTTAAACTTGGTAACTTTCACCGCCAGTGGTTAGACTTCCCTTGGTTATATTTGTGGTCGGGGTATGTGGTG 85 2 35 36 1 1 T/+752 0.0235 2;2 41.5 1 41.7 1 60.0 4.000 0.0294 0.0235 70 3.000 1 0.5 2 68 ATTCCTGGAGAGGGAATGTG TTGAGAAAAAGGCACTGCTT 20:20156209-20234556 Insertion 0 2-3-1 diff --git a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_36018823-36039513.bam;chr20;36018823;36039513;-f0.001.txt b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_36018823-36039513.bam;chr20;36018823;36039513;-f0.001.txt index be34db6..f8d379c 100644 --- a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_36018823-36039513.bam;chr20;36018823;36039513;-f0.001.txt +++ b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_36018823-36039513.bam;chr20;36018823;36039513;-f0.001.txt @@ -1,14 +1,14 @@ Simple,GRCh37.fa,NA24385_chr_20_36018823_36039513.bam,chr20,36018823,36039513,-f 0.001 NA24385_chr_20_36018823_36039513 testbed 20 36037140 36037140 G A 93 2 31 60 2 0 G/A 0.0215 2;0 17.0 0 42.0 0 60.0 4.000 0.0230 0 0 2.000 2 2.0 2 87 ACAGACAGGAAAAGGGGATG AGACAGAGGGGCTGGAGTTG 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36037149 36037149 G GGGCTGGAGTTGGTGGCGGGGAGGGAGCGGCAGGGAGAGAAGCTTTTTGTCCATCTGTTTGTCGTCTGTGAGGTCCATCCCGATTCTCACTCCCCGCAGCCCTCCCCTTTCTGGGGCTTTTCCCACCCAGCCCTTGGAGCGTGTCTCCTGGGATCCTGGGGCCGTGTCCATCTGTCCGTCTGTGTGTCAGCCTCTGCCTCCCGCCTGCCTCTTGCTGTGGTCTCATTA 88 8 32 56 4 4 G/+227 0.0909 2;2 24.0 1 37.5 1 60.0 16.000 0.0870 0.0909 70 4.000 1 0.2 8 92 AAAAGGGGATGGAGACAGAG GGCTGGAGTTGGTGGCGGGG 20:36018824-36039513 Insertion 0 8-0-0 -NA24385_chr_20_36018823_36039513 testbed 20 36037191 36037191 C CT 112 3 52 55 3 0 C/+1 0.0268 2;0 53.0 1 41.4 1 61.6 6.000 0.0283 0 5 6.000 1 1.4 3 106 GGGAGCGGCAGGGAGAGAAG TTTTTGTCCATCTGTTTGTC 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36037191 36037191 C CT 112 3 52 55 3 0 C/+1 0.0268 2;0 51.7 1 40.3 1 60.0 6.000 0.0283 0 5 6.000 1 1.4 3 106 GGGAGCGGCAGGGAGAGAAG TTTTTGTCCATCTGTTTGTC 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36037197 36037198 GT G 115 2 57 56 0 2 T/-1 0.0174 2;0 47.0 0 42.0 0 60.0 4.000 0.0179 0 0 1.000 1 1.5 2 112 GGCAGGGAGAGAAGCTTTTT CCATCTGTTTGTCGTCTGTG 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36037191 36037192 CT C 111 2 54 55 2 0 T/-1 0.0180 2;0 19.0 0 39.5 1 60.0 4.000 0.0198 0 4 5.000 1 0.5 2 101 GGGAGCGGCAGGGAGAGAAG TTTTGTCCATCTGTTTGTCG 20:36018824-36039513 Deletion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36037206 36037206 T TTTGTCGTCTGTGAGGTCCATCCCGATTCTCACTCCCCGAAGCCCTCCCCTTTCTGGGGCTTTTCCCACCCAGCCCTTGGAGCGTGTCTCCTGGGATCCTGGGGCCGTGTCCATCTGTCCGTCTGTGTGTCAGCCTCTGCCTCCCGCCTGCCTCTTGCTGTGGTCTCATTAAATGCTCATCTCTTTCTTTGATTGTTCCACCCCCAGGTTGTGTGTGTGGGCACGTGTGCATGTGTCCATGTATCCAGATCTCTGTGCCTTTGTGGCTGTCCATCTGC 110 2 46 37 0 2 T/+277 0.0182 2;0 48.6 1 50.9 1 74.8 4.000 0.0253 0.0182 38 3.000 1 1.2 2 79 AGAAGCTTTTTGTCCATCTG TTGTCGTCTGTGAGGTCCAT 20:36018824-36039513 Insertion 0 2-0-0 +NA24385_chr_20_36018823_36039513 testbed 20 36037206 36037206 T TTTGTCGTCTGTGAGGTCCATCCCGATTCTCACTCCCCGAAGCCCTCCCCTTTCTGGGGCTTTTCCCACCCAGCCCTTGGAGCGTGTCTCCTGGGATCCTGGGGCCGTGTCCATCTGTCCGTCTGTGTGTCAGCCTCTGCCTCCCGCCTGCCTCTTGCTGTGGTCTCATTAAATGCTCATCTCTTTCTTTGATTGTTCCACCCCCAGGTTGTGTGTGTGGGCACGTGTGCATGTGTCCATGTATCCAGATCTCTGTGCCTTTGTGGCTGTCCATCTGC 110 2 46 37 0 2 T/+277 0.0182 2;0 39.0 1 40.8 1 60.0 4.000 0.0253 0.0182 38 3.000 1 1.2 2 79 AGAAGCTTTTTGTCCATCTG TTGTCGTCTGTGAGGTCCAT 20:36018824-36039513 Insertion 0 2-0-0 NA24385_chr_20_36018823_36039513 testbed 20 36020829 36020829 A C 45 2 19 24 1 1 A/C 0.0444 2;2 6.0 0 42.0 0 60.0 4.000 0.0500 0 0 1.000 1 2.0 2 40 AGAAGAAGTGGGAGCCAGGG TCCAGGTTCATGTTCAGATT 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36020898 36020898 T TG 51 2 27 20 0 2 T/+1 0.0392 2;0 63.7 0 40.6 1 61.6 4.000 0.0465 0 5 6.000 1 0.5 2 43 CTCTGGGCCCTGGCGGTGGG GGGGGCCACCCTGCCTGCCG 20:36018824-36039513 Insertion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36020898 36020898 T TGG 51 2 27 20 2 0 T/+2 0.0392 2;0 21.6 0 40.6 0 61.6 4.000 0.0465 0 5 7.000 1 0 2 43 CTCTGGGCCCTGGCGGTGGG GGGGGCCACCCTGCCTGCCG 20:36018824-36039513 Insertion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36029113 36029113 C CT 63 2 24 37 1 1 C/+1 0.0317 2;2 28.2 1 32.9 1 61.6 4.000 0.0328 0 5 6.000 1 1.5 2 61 AGTTATTTTTCAAAATTCCA TTTTTGGAGGTATAGTTTAC 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36020898 36020898 T TG 51 2 27 20 0 2 T/+1 0.0392 2;0 62.0 0 39.5 1 60.0 4.000 0.0465 0 5 6.000 1 0.5 2 43 CTCTGGGCCCTGGCGGTGGG GGGGGCCACCCTGCCTGCCG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36020898 36020898 T TGG 51 2 27 20 2 0 T/+2 0.0392 2;0 21.0 0 39.5 0 60.0 4.000 0.0465 0 5 7.000 1 0 2 43 CTCTGGGCCCTGGCGGTGGG GGGGGCCACCCTGCCTGCCG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36029113 36029113 C CT 63 2 24 37 1 1 C/+1 0.0317 2;2 27.5 1 32.0 1 60.0 4.000 0.0328 0 5 6.000 1 1.5 2 61 AGTTATTTTTCAAAATTCCA TTTTTGGAGGTATAGTTTAC 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36029164 36029164 C CAGTTCAGTGGGTTTTAACAACTGGATTTACTGTGTACCCCTAACCATAATGAAGATATATAACATCTCCATCACCCAGAAAGTTCCTCATGCCCTTTGCAGACAGTACCCTCCAGCCCCAAACCCAAGCACCCACTGATTTGCTTTCTGTCATTATAAATTTGTTTTGTTTATTCTAGAATTTCATACATGGAATCTTTTACATCTGGGATGCATTGTTTTTTTACTTTTTACATTTCAATTTTTTATTTTTTGAGATGAGGTCTTGCTATGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCATAGCTCACTGCAGCCTTGACCTCCCAGGCTCAATTG 59 2 27 32 0 2 C/+339 0.0339 2;0 46.0 1 37.8 1 55.5 4.000 0.0339 0.0339 70 1.000 1 0.5 2 59 ATACACCCCTTTTAAGTGTT AGTTCAGTGGGTTTTAACAA 20:36018824-36039513 Insertion 0 2-0-0 NA24385_chr_20_36018823_36039513 testbed 20 36037342 36037342 C T 63 2 27 34 2 0 C/T 0.0317 2;0 9.0 0 34.5 1 60.0 4.000 0.0317 0 1 2.000 2 1.0 2 63 GTCCGTCTGTGTGTCAGCCT TGCCTCCCGCCTGCCTCTTG 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36021002 36021003 CT C 38 2 16 20 0 2 T/-1 0.0526 2;0 56.0 0 42.0 0 60.0 4.000 0.0588 0 0 2.000 1 0 2 34 CTGTCAAGCCCTGCTGCAAC GCAGGGGGTGCTCCTATCTG 20:36018824-36039513 Deletion 0 0 @@ -17,9 +17,9 @@ NA24385_chr_20_36018823_36039513 testbed 20 36037504 36037505 CT C 87 3 54 30 0 NA24385_chr_20_36018823_36039513 testbed 20 36029439 36029604 GCCCAGGCTGGAGTGCAGTGGCGTGATCATAGCTCACTGCAGCCTTGACCTCCCAGGCTCAATTGATCTTCTCATCTCAGCCTCTCAAGTAGCTGGGACTACAGGTGCACAACATCCTGCCCAGCTACTTTTTTTTTTCGTATTTTTTGTACAGACAGAGACTTAC CTACACGACGCTCTTCCGATCTGTGCATACATTGCCGGCCCGGA 53 3 26 24 0 3 G/-166iCTACACGACGCTCTTCCGATCTGTGCATACATTGCCGGCCCGGA 0.0566 2;0 36.3 1 39.6 1 60.0 6.000 0.0638 0.0566 0 3.000 1 0 3 47 AGATGAGGTCTTGCTATGTT TGTGTAGCTCAGGCTGGTCT 20:36018824-36039513 Complex 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36029399 36029456 TTTCAATTTTTTATTTTTTGAGATGAGGTCTTGCTATGTTGCCCAGGCTGGAGTGCAG CTGCACTCCAGCCTGGGCAACATAGCAAGACCTCATCTCAAAAAATAAAAAATTGAAA 50 2 20 22 2 0 C/-62iCACTGCACTCCAGCCTGGGCAACATAGCAAGACCTCATCTCAAAAAATAAAAAATTGAAATG 0.0400 2;0 42.0 1 41.2 1 51.0 4.000 0.0465 0.0400 0 2.000 1 0 2 43 TTGTTTTTTTACTTTTTACA TGGCGTGATCATAGCTCACT 20:36018824-36039513 Complex 0 2-0-0 NA24385_chr_20_36018823_36039513 testbed 20 36036653 36036653 A AGATACAGGAAAACACAAACCAACCAACCAACCATATTTCACACCCCCTGCTCCACCCCTCCCGCCTGGAGTCTGGGGCATGTCTCCAGGGTGCATGCAGGGTGTGTGTGGTGTGTGGTGTGTGGTGTGTGTAGGGGTGTGCGGCATATGCGTGTCCCTGCTGCTGTTGCCTCCCAGGCTTTTTCCTATGAGCTTCGAAAGTCTCTTTGTTCATCCTCTGCTTCTCTCGTCCCCTCTCTTCCTCCCTCCCTAGTTACATTCTCCAGACCAGACTTCATGCTGGGTGCACGCATGCACAGACACACACACACACGCGCGCATACACATGCACACACACACACACACAC 126 3 36 27 0 3 A/+346 0.0238 2;0 23.0 1 41.9 1 60.0 6.000 0.0469 0.0238 70 9.000 2 0.7 3 64 TCTTTCTGGCAAAATAGGAA GATACAGGAAAACACAAACC 20:36018824-36039513 Insertion 0 3-0-0 -NA24385_chr_20_36018823_36039513 testbed 20 36028477 36028477 T TG 49 4 25 19 3 1 T/+1 0.0816 2;2 41.9 1 34.4 1 62.0 3.000 0.0682 0 6 7.000 1 0.3 3 44 GATCCCTGTGTGGTAGGAGT GGGGGGCTCCACTGAGTCAG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36028477 36028477 T TG 49 4 25 19 3 1 T/+1 0.0816 2;2 40.5 1 33.2 1 60.0 3.000 0.0682 0 6 7.000 1 0.3 3 44 GATCCCTGTGTGGTAGGAGT GGGGGGCTCCACTGAGTCAG 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36036613 36036613 G C 79 3 39 37 0 3 G/C 0.0380 2;0 17.3 1 31.7 1 60.0 2.000 0.0270 0.0253 0 1.000 1 3.7 2 74 AACTAAAATGTTTCCCCCAT ACAAAAAAAGAATATATATT 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36036615 36036615 C CA 74 2 35 35 1 1 C/+1 0.0270 2;2 74.4 1 38.5 1 62.4 4.000 0.0290 0 7 8.000 1 2.1 2 69 CTAAAATGTTTCCCCCATGA AAAAAAAGAATATATATTCT 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36036615 36036615 C CA 74 2 35 35 1 1 C/+1 0.0270 2;2 71.5 1 37.0 1 60.0 4.000 0.0290 0 7 8.000 1 2.1 2 69 CTAAAATGTTTCCCCCATGA AAAAAAAGAATATATATTCT 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36036711 36036711 C T 66 2 42 22 2 0 C/T 0.0303 2;0 38.0 0 42.0 0 60.0 4.000 0.0323 0 1 1.000 1 2.0 2 62 TCACACCCCCTGCTCCACCC TCCCGCCTGGAGTCTGGGGC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36036711 36036712 CT C 67 3 44 19 0 3 T/-1 0.0448 2;0 48.0 0 42.0 0 60.0 6.000 0.0508 0 0 7.000 1 1.3 3 59 TCACACCCCCTGCTCCACCC CCCGCCTGGAGTCTGGGGCA 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36036689 36036689 T TTTCACACCCCCTGCTCCACCCCTCCCGCCTGGAGTCTGGGGCATGTCTCCAGGGTGCATGCAGGGTGTGTGTGGTGTGTGGTGTGTGGTGTGTGTAGGGGTGTGCGGCATATGCGTGTCCCTGCTGCTGTTGCCTCCCAGGCTTTTTCCTATG 117 2 46 19 1 1 T/+153 0.0171 2;2 28.0 1 38.0 1 60.0 4.000 0.0345 0.0171 70 3.000 1 0 2 58 AAACCAACCAACCAACCATA TTCACACCCCCTGCTCCACC 20:36018824-36039513 Insertion 0 2-0-0 @@ -29,42 +29,42 @@ NA24385_chr_20_36018823_36039513 testbed 20 36036778 36036778 T C 168 3 91 73 3 NA24385_chr_20_36018823_36039513 testbed 20 36028601 36028601 C T 55 2 20 33 0 2 C/T 0.0364 2;0 6.0 0 39.5 1 60.0 4.000 0.0377 0 0 1.000 1 1.0 2 53 AGGCCTTCCTGCAGGAGGCC AGGTCATGAAGAAGCTGAGG 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36020368 36020828 C 55 2 30 23 1 1 C/ 0.0364 2;2 37.0 1 40.1 1 60.0 4.000 0.0385 0.0364 0 3.000 1 2.0 2 52 TCTTCATCTGGGGCCTGGAG ATCCAGGTTCATGTTCAGAT 20:36018824-36039513 INV 0 2-0-0 NA24385_chr_20_36018823_36039513 testbed 20 36036839 36036839 T A 119 4 68 47 0 4 T/A 0.0336 2;0 7.8 1 42.0 1 60.0 8.000 0.0348 0.0084 0 1.000 1 1.8 4 115 TTGCCTCCCAGGCTTTTTCC ATGAGCTTCGAAAGTCTCTT 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36020473 36020473 T TCCAAAGAAGCCTTTGGATGCC 58 3 29 25 1 2 T/+21 0.0517 2;2 12.7 1 41.0 1 62.0 6.000 0.0638 0.0517 6 4.000 1 1.0 3 47 GTGGGTGGGGATTTGGGGCA CCAAAGGCTTCTTTTCTTGA 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36020473 36020473 T TCCAAAGAAGCCTTTGGATGCC 58 3 29 25 1 2 T/+21 0.0517 2;2 12.3 1 39.7 1 60.0 6.000 0.0638 0.0517 6 4.000 1 1.0 3 47 GTGGGTGGGGATTTGGGGCA CCAAAGGCTTCTTTTCTTGA 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36036813 36036814 CT C 104 3 63 38 0 3 T/-1 0.0288 2;0 34.0 0 42.0 0 60.0 6.000 0.0300 0 0 2.000 2 2.0 3 100 GCGGCATATGCGTGTCCCTG GCTGTTGCCTCCCAGGCTTT 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36028726 36028726 C CAGGGGCACTCCGGACAGGGCAGGGAGCATGAGCCTCATTTCCTCTCATGTCTAGAATGGGCATCTTCAAAGGTGGAATGCAGTAGAGCCAAATTCTCTGTTGCCTGGGCCGGAGTGTGGTGGTGCAATCATAGCTCACTTCAGCCTCAACCTTCCAGGCTCAAGCAGTTCTCCCACCTCAGCCACCCAAGTAGCTGGGACCACAGGTGTGTGTCACCAGGCCCAGCTAATTTTTTATTTTTTGTAGAGATGGGACCCTATGTTGCCCAGGCTGGTCTCGAACTCTTGGGCTCAAGGAGTCCTCCCACTTCCACCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACAGTAATTTTTAAACTAATTAGTTATTTTTCAAAATTCCACTTTTTGGAGGTATAGTT 64 2 27 26 2 0 C/+404 0.0312 2;0 31.0 1 41.6 1 60.0 4.000 0.0400 0.0312 70 2.000 1 2.0 2 50 TGGGCGGCCGGGGCAGGGGG AGGGGCACTCCGGACAGGGC 20:36018824-36039513 Insertion 0 2-0-0 NA24385_chr_20_36018823_36039513 testbed 20 36036881 36036881 G GTCCCCTCTCTTCCTCCCTCCCTAGTTACATTCTCCAGACCAGACTTCATGCTGGGTGCACGCATGCACAGACACACACACACACGCGCGCATACACATGCACACACACACACACACACGCACACTCTGCATTTTCTATCATCTCTGTCTTCTTTTCCCATTTTTCTCTCAGAGGCTCTGAAACGCTGTGATTCATAGAGAGAAAAAGAGACAGGCAGAGATTCAGAGATTCAGACAGGACAGACAGGAAAAGGGGATGGAGACAGAGGGGCTGGAGTTGGTGGCGGGGAGGGAGCGGCAGGGAGAGAAGCTTTTTGTCCATCTGTTTGTCGTCTGTGAGGTCCATCCCGATTCTCAC 112 2 57 55 0 2 G/+357 0.0179 2;0 17.0 1 35.5 1 60.0 4.000 0.0189 0.0179 70 1.000 1 0 2 106 GTTCATCCTCTGCTTCTCTC TCCCCTCTCTTCCTCCCTCC 20:36018824-36039513 Insertion 0 2-0-0 NA24385_chr_20_36018823_36039513 testbed 20 36036969 36036969 C T 131 2 56 72 0 2 C/T 0.0153 2;0 9.0 0 42.0 0 60.0 4.000 0.0159 0 2 3.000 2 1.5 2 126 CAGACACACACACACACGCG GCATACACATGCACACACAC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36036980 36036982 GCA G 132 2 57 73 0 2 C/-2 0.0152 2;0 44.0 1 37.0 1 60.0 4.000 0.0161 0 17 9.000 2 1.0 2 124 ACACACGCGCGCATACACAT CACACACACACACACACGCA 20:36018824-36039513 Deletion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36036980 36036980 G GCA 131 4 42 57 2 2 G/+2 0.0305 2;2 59.9 1 44.9 1 67.2 8.000 0.0426 0 19 10.000 2 1.1 4 94 ACACACGCGCGCATACACAT CACACACACACACACACACG 20:36018824-36039513 Insertion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36036951 36036951 G GAC 149 6 57 72 0 6 G/+2 0.0403 2;0 48.4 1 45.2 1 65.2 12.000 0.0492 0 14 8.000 2 0.5 6 122 GCTGGGTGCACGCATGCACA ACACACACACACACGCGCGC 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36036980 36036980 G GCA 131 4 42 57 2 2 G/+2 0.0305 2;2 53.5 1 40.1 1 60.0 8.000 0.0426 0 19 10.000 2 1.1 4 94 ACACACGCGCGCATACACAT CACACACACACACACACACG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36036951 36036951 G GAC 149 6 57 72 0 6 G/+2 0.0403 2;0 44.5 1 41.6 1 60.0 12.000 0.0492 0 14 8.000 2 0.5 6 122 GCTGGGTGCACGCATGCACA ACACACACACACACGCGCGC 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36036949 36036951 CAG C 149 2 62 83 0 2 A/-2 0.0134 2;0 27.5 1 39.5 1 60.0 4.000 0.0144 0.0067 1 8.000 2 4.0 2 139 ATGCTGGGTGCACGCATGCA ACACACACACACACGCGCGC 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36037032 36037033 CT C 117 5 48 63 3 2 T/-1 0.0427 2;2 11.8 1 35.3 1 60.0 10.000 0.0459 0.0171 3 4.000 1 0.6 5 109 TTTTCTATCATCTCTGTCTT TTTCCCATTTTTCTCTCAGA 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36037047 36037047 T TCTCAGAGGCTCTGAAACGCTGTGATTCATAGAGAGAAAAAGAGACAGGCAGAGATTCAGAGATTCAGACAGGACAGACAGGAAAAGGGGATGGAGACAGAGGGGCTGGAGTTGGTGGCGGGGAGGGAGCGGCAGGGAGAGAAGCTTTTTGTCCATCTGTTTGTCGTCTGTGAGGTCCATCCCGATTCTCACTCCCCGCAGCCCTC 103 7 41 58 5 2 T/+205 0.0680 2;2 31.1 1 37.9 1 60.0 14.000 0.0693 0.0680 70 2.000 1 0.6 7 101 GTCTTCTTTTCCCATTTTTC CTCAGAGGCTCTGAAACGCT 20:36018824-36039513 Insertion 0 7-0-0 -NA24385_chr_20_36018823_36039513 testbed 20 36037040 36037040 A ATT 107 2 42 54 0 2 A/+2 0.0187 2;0 54.4 0 43.1 0 61.6 4.000 0.0225 0 5 7.000 1 1.0 2 89 CATCTCTGTCTTCTTTTCCC TTTTTCTCTCAGAGGCTCTG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36037040 36037040 A ATT 107 2 42 54 0 2 A/+2 0.0187 2;0 53.0 0 42.0 0 60.0 4.000 0.0225 0 5 7.000 1 1.0 2 89 CATCTCTGTCTTCTTTTCCC TTTTTCTCTCAGAGGCTCTG 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36037000 36037000 G A 126 2 51 71 0 2 G/A 0.0159 2;0 28.0 1 39.5 1 60.0 4.000 0.0169 0 0 1.000 1 2.0 2 118 GCACACACACACACACACAC CACACTCTGCATTTTCTATC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36037021 36037022 AT A 120 2 53 64 1 1 T/-1 0.0167 2;2 14.0 1 42.0 0 60.0 4.000 0.0182 0 0 1.000 1 0 2 110 CACACTCTGCATTTTCTATC CTCTGTCTTCTTTTCCCATT 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36037069 36037069 T A 98 2 36 60 0 2 T/A 0.0204 2;0 23.5 1 39.5 1 60.0 4.000 0.0217 0.0102 0 2.000 2 2.0 2 92 TCAGAGGCTCTGAAACGCTG GATTCATAGAGAGAAAAAGA 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36021812 36021813 GA G 59 2 32 24 0 2 A/-1 0.0339 2;0 61.0 0 42.0 0 60.0 4.000 0.0417 0 0 3.000 1 0 2 48 CAGGTCTCACCAGCTCCCAG GCGGGCTTCCAAATCTCAGA 20:36018824-36039513 Deletion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36038175 36038175 A AT 64 2 29 32 0 2 A/+1 0.0312 2;0 65.7 0 43.1 0 61.6 4.000 0.0357 0 5 6.000 1 0 2 56 TATACCCAGCTAATCTTTGT TTTTTAGTAGAGACAGGGTT 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36038175 36038175 A AT 64 2 29 32 0 2 A/+1 0.0312 2;0 64.0 0 42.0 0 60.0 4.000 0.0357 0 5 6.000 1 0 2 56 TATACCCAGCTAATCTTTGT TTTTTAGTAGAGACAGGGTT 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36021859 36021860 CT C 47 2 20 24 0 2 T/-1 0.0426 2;0 19.0 0 42.0 0 60.0 4.000 0.0500 0 1 2.000 1 0 2 40 GGGACACTTTGTAGGTCTCA TGACTTTCTCTCAGCCAGGA 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36038265 36038265 A AGTGCTGGGATTACAGGCATGAGCCATTGTACCTGGCCGACATCTTTCCTTTCTTCAGCCTGCAAATCCCACCTCCTCTGGGAAGCCCTCTTGATAACCCCCTTTGCTGGGTTCCCTTGTCTCTGATACTCCCTGCAGTGAGATCTGTCCTGGCCTTGGTCTTATCGCAGGCTGGGCACCCAGCTGGAGTCCCATTTGGACCTTCGTGGGCCTAGACACCTTGGCCCTTTCCTTAGAAAAGAAAATTAAAAATTACATGTTACGATAGCACTGGTATCAACACGAATATATTAAT 80 2 31 49 0 2 A/+294 0.0250 2;0 26.0 1 36.2 1 60.0 4.000 0.0274 0.0250 70 3.000 1 1.0 2 73 TGCCCGCCTAAGCCTCCCAA GTGCTGGGATTACAGGCATG 20:36018824-36039513 Insertion 0 2-9-2 NA24385_chr_20_36018823_36039513 testbed 20 36038228 36038229 CT C 83 2 30 51 0 2 T/-1 0.0241 2;0 25.0 0 42.0 0 60.0 4.000 0.0267 0 3 4.000 1 0 2 75 TTGGCCAGGACGGTCTTGAT TTTGACCTCATGATCTGCCC 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36021941 36021941 A G 46 3 9 34 0 3 A/G 0.0652 2;0 8.3 1 30.3 1 60.0 2.000 0.0500 0 0 2.000 1 3.0 2 40 GGTTCCCTCCCTCCCTCCCA GGCAGCTCTCGGCATCTTGA 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36021937 36021937 C A 46 3 8 35 1 2 C/A 0.0652 2;2 6.0 0 40.3 1 60.0 6.000 0.0682 0 1 3.000 1 1.0 3 44 AGGGGGTTCCCTCCCTCCCT CCAAGGCAGCTCTCGGCATC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36021984 36021985 GA G 40 2 9 27 1 1 A/-1 0.0500 2;2 18.0 1 38.2 1 60.0 4.000 0.0588 0.0250 1 2.000 1 2.0 2 34 TGTCTTGGTACATCTGAAAG AGTGAATTTCTTCCTGTCCC 20:36018824-36039513 Deletion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36038361 36038361 A AC 47 3 26 15 2 1 A/+1 0.0638 2;2 30.1 1 43.1 0 61.6 6.000 0.0811 0 5 6.000 1 0.3 3 37 TCTGGGAAGCCCTCTTGATA CCCCCTTTGCTGGGTTCCCT 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36038361 36038361 A AC 47 3 26 15 2 1 A/+1 0.0638 2;2 29.3 1 42.0 0 60.0 6.000 0.0811 0 5 6.000 1 0.3 3 37 TCTGGGAAGCCCTCTTGATA CCCCCTTTGCTGGGTTCCCT 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36030259 36030259 G A 33 2 11 20 2 0 G/A 0.0606 2;0 29.0 0 39.5 1 60.0 4.000 0.0606 0 0 1.000 1 1.0 2 33 TTACAGGTGCCCTGAGGGGT ATTCTGGGCAGCAGAAGGCC 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36030405 36030405 C CT 34 4 15 14 1 3 C/+1 0.1176 2;2 33.9 1 39.3 1 64.0 8.000 0.1333 0.0294 11 12.000 1 0.5 4 30 GTAGGCAGTGGTCAACAAGC TTTTTTTTTTTCATTTAATC 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36030405 36030405 C CT 34 4 15 14 1 3 C/+1 0.1176 2;2 31.8 1 36.8 1 60.0 8.000 0.1333 0.0294 11 12.000 1 0.5 4 30 GTAGGCAGTGGTCAACAAGC TTTTTTTTTTTCATTTAATC 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36038609 36038610 AT A 54 3 33 18 3 0 T/-1 0.0556 2;0 53.0 0 42.0 0 60.0 6.000 0.0577 0 3 4.000 1 0 3 52 AAAAGTTCGTTTTTCTTCTG TTTAAAAGAAATTGGAACAT 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36037676 36037676 G T 69 3 33 32 2 1 G/T 0.0435 2;2 28.0 1 31.7 1 60.0 2.000 0.0317 0 0 2.000 1 2.7 2 63 TTCTCCTCACTCCCCATCCT GTCCAGCCTCAGCCTCAAGG 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36029566 36029567 CT C 37 3 16 18 2 1 T/-1 0.0811 2;2 34.0 1 42.0 0 52.0 6.000 0.0938 0 9 10.000 1 0.7 3 32 CACAACATCCTGCCCAGCTA TTTTTTTTTCGTATTTTTTG 20:36018824-36039513 Deletion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36037793 36037793 A AG 65 7 23 34 5 2 A/+1 0.1077 2;2 45.3 1 39.9 1 61.6 14.000 0.1228 0.0308 5 6.000 1 0.9 7 57 TCCACTCCCACTCCGTCAGC GGGGGACCTCTGGCACAGAG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36037793 36037793 A AG 65 7 23 34 5 2 A/+1 0.1077 2;2 44.1 1 38.9 1 60.0 14.000 0.1228 0.0308 5 6.000 1 0.9 7 57 TCCACTCCCACTCCGTCAGC GGGGGACCTCTGGCACAGAG 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36029643 36029643 C T 44 2 18 24 0 2 C/T 0.0455 2;0 43.0 0 42.0 0 60.0 4.000 0.0476 0 0 1.000 1 1.0 2 42 CTCAAACTATTGGGCTCAAG GATCTTCCCACCTCGGCCTC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36021539 36021539 C A 71 2 47 22 2 0 C/A 0.0282 2;0 27.0 0 37.0 0 60.0 4.000 0.0286 0 0 1.000 1 1.0 2 70 CACTTTCGCATAGAAGTGCC TGGGCATTGGGGCTCTGCCA 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36037912 36037912 T TC 58 2 31 25 1 1 T/+1 0.0345 2;2 33.4 1 43.1 0 61.6 4.000 0.0400 0 5 6.000 1 0.5 2 50 CCCACTCAGAGCCCTGTGTC CCCCCACCTGCCTGTGCACA 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36037912 36037912 T TC 58 2 31 25 1 1 T/+1 0.0345 2;2 32.5 1 42.0 0 60.0 4.000 0.0400 0 5 6.000 1 0.5 2 50 CCCACTCAGAGCCCTGTGTC CCCCCACCTGCCTGTGCACA 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36021607 36021607 A AGCCCCCTCTGGCCTCAGTTTCCCCCTGCAGATGGGTAGGCTGGAGGAGGAGGCCTGTAGTTTTCAGCCGAGGAGCCCTTTAGGTGTGACCCGTGATTTGGGACAGAGGCAAGCCTTGCTCTAGTTTGCAGGGTTGGGGCCTGGATGGTCACTGGGTCCCAGCAGGGCCCCTGCTTGCCTCCACCCAGGTCTCACCAGCTCCCAGGAGCGGGCTTCCAAATCTCAGAGCATGGGGACACTTTGTAGGTCTCACTTGACTTTCTCTCAGCCAGGAATCTCTTCTATTACAACCTTACTTGCCCGCAGAGACAGGGGGTTCCCTCCCTCCCTCCCAAGGCAGCTCTCGGCATCTTGAGATGTCTTGGTACATCTGAAAGG 59 2 30 29 0 2 A/+377 0.0339 2;0 31.0 1 40.3 1 60.0 4.000 0.0339 0.0339 70 3.000 1 1.0 2 59 TGTGACTTTGGGCAAGTCCC GCCCCCTCTGGCCTCAGTTT 20:36018824-36039513 Insertion 0 2-0-0 NA24385_chr_20_36018823_36039513 testbed 20 36038006 36038007 CT C 60 6 34 20 0 6 T/-1 0.1000 2;0 20.3 1 34.4 1 60.0 12.000 0.1000 0.0500 11 12.000 1 1.2 6 60 CTGCCTGACATCTTTCCTTT TTTTTTTTTTTGAGACAGAG 20:36018824-36039513 Deletion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36038006 36038006 C CT 57 5 27 22 5 0 C/+1 0.0877 2;0 31.1 1 44.4 1 64.4 10.000 0.0962 0.0175 12 13.000 1 0.9 5 52 CTGCCTGACATCTTTCCTTT TTTTTTTTTTTTGAGACAGA 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36038006 36038006 C CT 57 5 27 22 5 0 C/+1 0.0877 2;0 29.0 1 41.4 1 60.0 10.000 0.0962 0.0175 12 13.000 1 0.9 5 52 CTGCCTGACATCTTTCCTTT TTTTTTTTTTTTGAGACAGA 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36029856 36029857 GA G 40 2 23 15 0 2 A/-1 0.0500 2;0 72.0 0 42.0 0 60.0 4.000 0.0556 0 0 2.000 1 0.5 2 36 CCTTTTGAGTGACAAGCACT GTGAGACTTTATTCAGAGAT 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36021688 36021688 A T 53 2 21 29 2 0 A/T 0.0377 2;0 37.0 0 42.0 0 60.0 4.000 0.0400 0 1 2.000 1 1.0 2 50 TTTCAGCCGAGGAGCCCTTT GGTGTGACCCGTGATTTGGG 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36029854 36029854 C G 43 3 23 17 2 1 C/G 0.0698 2;2 5.0 1 42.0 1 60.0 6.000 0.0750 0.0233 0 1.000 1 2.7 3 40 TGCCTTTTGAGTGACAAGCA TGAGTGAGACTTTATTCAGA 20:36018824-36039513 SNV 0 0 @@ -88,20 +88,20 @@ NA24385_chr_20_36018823_36039513 testbed 20 36022516 36022516 A G 48 2 22 23 2 0 NA24385_chr_20_36018823_36039513 testbed 20 36038895 36038944 TCTCTGTGTTTGTTTGTTTGTTTGGTTTTTTTTTTTGAGACAGGGTCTTG T 68 2 34 32 0 2 C/-49 0.0294 2;0 34.0 1 34.5 1 41.0 4.000 0.0323 0.0294 6 3.000 2 0 2 62 TCTTCATCTCTGTGTCCATC CTCTGTCTCCCAGGCTGGAA 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36030658 36030658 C T 44 42 1 1 23 19 C/T 0.9545 2;2 40.4 1 34.5 1 60.0 6.000 0.9730 0.0227 0 3.000 1 1.8 36 37 GTGCCCTGTGCTCCCTACTC CGCAGAGCACTGCTCCTGCT 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36030663 36030664 GA G 46 4 22 20 2 2 A/-1 0.0870 2;2 29.5 1 40.8 1 60.0 8.000 0.1026 0 0 2.000 1 1.0 4 39 CTGTGCTCCCTACTCCCGCA GCACTGCTCCTGCTTTCGAT 20:36018824-36039513 Deletion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36038919 36038919 G GT 72 6 32 28 1 5 G/+1 0.0833 2;2 36.8 1 34.8 1 64.0 2.000 0.0667 0 11 12.000 1 0.7 4 60 TGTGTTTGTTTGTTTGTTTG TTTTTTTTTTTGAGACAGGG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36038919 36038919 G GT 72 6 32 28 1 5 G/+1 0.0833 2;2 34.5 1 32.7 1 60.0 2.000 0.0667 0 11 12.000 1 0.7 4 60 TGTGTTTGTTTGTTTGTTTG TTTTTTTTTTTGAGACAGGG 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36038919 36038920 GT G 72 5 34 31 1 4 T/-1 0.0694 2;2 39.8 1 35.8 1 55.2 4.000 0.0597 0 10 11.000 1 0.4 4 67 TGTGTTTGTTTGTTTGTTTG TTTTTTTTTTGAGACAGGGT 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36030939 36030939 G C 25 25 0 0 12 13 C/C 1.0000 0;2 33.7 1 37.2 1 60.0 11.500 1.0000 0 0 2.000 1 2.1 23 23 AACCTGGTGTGCAAAGTGGC GACTTTGGGCTGGCTCGGCT 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36023897 36023897 A C 54 3 26 25 3 0 A/C 0.0556 2;0 5.7 1 25.3 1 60.0 2.000 0.0392 0.0370 0 4.000 1 2.7 2 51 GGGAGGAAACTTTTCCGGCC AAAGCTTTTCTATGCTCAAG 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36032163 36032163 A AC 71 2 40 28 1 1 A/+1 0.0282 2;2 53.9 1 43.1 0 61.6 4.000 0.0364 0 5 6.000 1 0 2 55 TCCTTCCCCACTTCTGTGCC CCCCCGGTCTATGTCGAGAG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36032163 36032163 A AC 71 2 40 28 1 1 A/+1 0.0282 2;2 52.5 1 42.0 0 60.0 4.000 0.0364 0 5 6.000 1 0 2 55 TCCTTCCCCACTTCTGTGCC CCCCCGGTCTATGTCGAGAG 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36023997 36023997 C A 57 2 39 16 2 0 C/A 0.0351 2;0 45.0 0 42.0 0 60.0 4.000 0.0357 0 1 1.000 1 1.0 2 56 CCAGCCCGTGGTCTCCTGCC ACGACGGCCAAAGCCTCTGC 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36023943 36023943 G GC 54 2 38 14 2 0 G/+1 0.0370 2;0 47.9 0 40.3 1 61.2 4.000 0.0392 0 4 5.000 1 1.0 2 51 GAGGGGAGGCACCAGGGCTG CCCCGTTTGACCCAGGCAGC 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36023943 36023943 G GC 54 2 38 14 2 0 G/+1 0.0370 2;0 47.0 0 39.5 1 60.0 4.000 0.0392 0 4 5.000 1 1.0 2 51 GAGGGGAGGCACCAGGGCTG CCCCGTTTGACCCAGGCAGC 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36024051 36024052 CT C 45 3 18 24 0 3 T/-1 0.0667 2;0 71.0 0 42.0 0 60.0 6.000 0.0714 0 1 2.000 1 0 3 42 CCGCCTGAGCCTGGGCCTGT TCAGCAAGGAGGTTGGGGGG 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36032290 36032290 C T 51 20 10 21 6 14 C/T 0.3922 2;2 34.1 1 37.1 1 60.0 5.667 0.3617 0 1 1.000 1 1.6 17 47 CACCTGTAGGCAGAGGCTGC GAGACAGACCCTCTGCCGCT 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36032266 36032267 GA G 55 6 24 25 3 3 A/-1 0.1091 2;2 40.5 1 42.0 0 60.0 12.000 0.1132 0 2 3.000 1 0 6 53 GCCCCTTGCCATCCATTCTG AACACCTGTAGGCAGAGGCT 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36024170 36024170 T TTGAGTGCCCAGTGTGTGCCGGGCCCTTCTATATGTGGTTGCATGGAATCTCCCCAGCAGCCCTGGGAGCACCCGCATTGTGCAGAGGAGGAAACTGAGGCCCAGATAGGGCCAGCAACCCCTCCAAGTCTCATAGCTAGGATGTGCACCTGGGATATGGAGGTCTTGCTGGGGCCAAGGGTGCGTGGCAGGACGTACTAATCAAGTGTCTCTTGGGTCCCTTGGCCCTGCCTCTGTGGCTGCCCCGGGGCTGGCTGTTGAGAGACAGGGTGGGCCTGGGGCCCCGCCTGGGCCTCCCTTCCCTCCAATGTCAGGCAGGCACAGAACGGTGTCCAGAGCAGCGGCCTGCGGGGGGGA 77 2 20 37 0 2 T/+356 0.0260 2;0 56.0 1 35.7 1 60.0 4.000 0.0364 0.0260 70 2.000 1 0 2 55 TCACAGGCTCCCAGCAGTTA TGAGTGCCCAGTGTGTGCCG 20:36018824-36039513 Insertion 0 2-4-2 -NA24385_chr_20_36018823_36039513 testbed 20 36032374 36032374 A AC 37 3 14 20 0 3 A/+1 0.0811 2;0 55.8 1 43.1 0 61.6 6.000 0.0968 0 5 6.000 1 1.0 3 31 GGTGGGTGGGTGGGATGAGT CCCCCTCAAACCCTGCCCTC 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36032374 36032374 A AC 37 3 14 20 0 3 A/+1 0.0811 2;0 54.3 1 42.0 0 60.0 6.000 0.0968 0 5 6.000 1 1.0 3 31 GGTGGGTGGGTGGGATGAGT CCCCCTCAAACCCTGCCCTC 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36024140 36024140 A T 65 2 20 43 0 2 A/T 0.0308 2;0 8.0 0 42.0 0 60.0 4.000 0.0323 0 0 3.000 1 1.0 2 62 GGCCAGGGCCACACAGCCAC GGGAGCCACTCACAGGCTCC 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36032433 36032433 G GC 45 4 18 23 2 2 G/+1 0.0889 2;2 24.1 1 42.3 1 61.6 8.000 0.0930 0.0444 5 6.000 1 0 4 43 TTCGAGATCATCACTTCCTT CCCCCATTTCACCCATGGGG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36032433 36032433 G GC 45 4 18 23 2 2 G/+1 0.0889 2;2 23.5 1 41.2 1 60.0 8.000 0.0930 0.0444 5 6.000 1 0 4 43 TTCGAGATCATCACTTCCTT CCCCCATTTCACCCATGGGG 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36023336 36023337 TG T 85 3 37 45 3 0 G/-1 0.0353 2;0 72.0 0 40.3 1 60.0 6.000 0.0361 0 3 4.000 1 0 3 83 GGCGTGTGTGTGTGTGCATG GGGTGGAATTGTCTGTGTGT 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36023323 36023323 G A 76 6 26 44 3 3 G/A 0.0789 2;2 45.0 1 42.0 0 60.0 12.000 0.0833 0 0 6.000 2 1.0 6 72 GTGTGTACATCTGGGCGTGT TGTGTGTGCATGTGGGGTGG 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36023494 36023494 T C 79 2 30 47 1 1 T/C 0.0253 2;2 5.0 1 42.0 1 60.0 4.000 0.0278 0.0127 1 1.000 1 1.0 2 72 GGCTGGGGTTGGCTTCAGCC CAGGCCTGTGGCTTCCACAT 20:36018824-36039513 SNV 0 0 @@ -113,50 +113,50 @@ NA24385_chr_20_36018823_36039513 testbed 20 36033030 36033031 CT C 38 2 16 19 2 NA24385_chr_20_36018823_36039513 testbed 20 36024943 36024944 CT C 123 2 54 64 2 0 T/-1 0.0163 2;0 56.0 0 37.0 0 60.0 4.000 0.0198 0 0 3.000 1 3.5 2 101 CCTGTCCCCCTCTCTCCCTG CCACGCAGTGTCCCACTGCC 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36024904 36024904 T TCCCCCAGCCCCCCTCCTCCCTGTCCCCCTCTCTCCCTGCTCCACGCAGTGTCCCACTGCCCGCCTTTCTCTGCAGCTGGCTGGTATGGAGGGGGCTGCCCTGAGGAGCCCCAGAGTAAGCTGGAAGGGAGGGGACAGAGGCTGGTGTCATTTGTCTCTGTAGCCCTAGGACCGGTCTGAACCGGTTGCTGGGAGAGGAGGAGGGGGCGGCCAGATCGATTGCAGCAAAGAGGGAAGAGAGCGGCAGAGGGAGCTCGCGGGGCTTGCGTGCTGGGTGAGGGCTCGGGCGTGGGCGCAGTGCTGTAGCCCACCCACCTGGGCATCCGAAGCTGACTGCAGTGTCGGGCCTGTGGGTGCCTGTGTGCCCGTGTGTCTGTGGCACACATGGCCTCTGTGCACAGGTGTTGGTCCTC 108 4 51 48 1 3 T/+412 0.0370 2;2 18.2 1 35.5 1 60.0 3.000 0.0375 0.0370 70 6.000 1 1.2 3 80 TCCTTCTTCTTCCTCTTCTT CCCCCAGCCCCCCTCCTCCC 20:36018824-36039513 Insertion 0 4-0-0 NA24385_chr_20_36018823_36039513 testbed 20 36024903 36024917 TTCCCCCAGCCCCCC T 108 3 51 48 3 0 T/-14 0.0278 2;0 69.0 0 40.3 1 60.0 6.000 0.0375 0 3 6.000 1 1.3 3 80 CTCCTTCTTCTTCCTCTTCT TCCTCCCTGTCCCCCTCTCT 20:36018824-36039513 Deletion 0 4-0-0 -NA24385_chr_20_36018823_36039513 testbed 20 36024904 36024904 T TC 108 2 51 48 0 2 T/+1 0.0185 2;0 25.7 0 40.6 1 61.6 4.000 0.0250 0 5 6.000 1 0.5 2 80 TCCTTCTTCTTCCTCTTCTT CCCCCAGCCCCCCTCCTCCC 20:36018824-36039513 Insertion 0 4-0-0 +NA24385_chr_20_36018823_36039513 testbed 20 36024904 36024904 T TC 108 2 51 48 0 2 T/+1 0.0185 2;0 25.0 0 39.5 1 60.0 4.000 0.0250 0 5 6.000 1 0.5 2 80 TCCTTCTTCTTCCTCTTCTT CCCCCAGCCCCCCTCCTCCC 20:36018824-36039513 Insertion 0 4-0-0 NA24385_chr_20_36018823_36039513 testbed 20 36024923 36024923 C T 125 4 62 59 0 4 C/T 0.0320 2;0 9.0 0 40.8 1 60.0 8.000 0.0323 0 1 3.000 1 4.0 4 124 TTCCCCCAGCCCCCCTCCTC CTGTCCCCCTCTCTCCCTGC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36033208 36033208 C T 56 3 24 29 3 0 C/T 0.0536 2;0 22.7 1 28.3 1 60.0 2.000 0.0377 0 0 1.000 1 2.3 2 53 CTTTGGGTGTGTGGTGGATT TCCCTGGGCCTCAGTGTGCC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36033265 36033265 T A 61 3 29 29 0 3 T/A 0.0492 2;0 74.0 0 40.3 1 60.0 6.000 0.0517 0 0 1.000 1 1.3 3 58 GCTGACAGTTTGTGGCATCT GCCAAGGGTCCCTGTGTGTG 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36025127 36025127 A G 88 2 47 39 2 0 A/G 0.0227 2;0 32.0 1 29.5 1 60.0 4.000 0.0256 0.0114 0 1.000 1 3.0 2 78 GGGGCGGCCAGATCGATTGC GCAAAGAGGGAAGAGAGCGG 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36033381 36033381 T TCACCATGGCCCCCTCATCATAGCAATAACATTCCCACTGCCAGGGGTTCTTGAGCCAGCCAGGCCCTGCCAGTGGGGAAGGAGGCCAAGCAGTGCCTGCCTATGAAATTTCAACTTTTCCTTTCATACGTCTTTATTACCCAAGTCTTCTCCCGTCCATTCCAGTCAAATCTGGGCTCACTCACCCCAGCGAGCTCTCAAATCCCTCTCCAACTGCCTAAGGCCCTTTGTGTAAGGTGTCTTAATACTGTCCTTTTTTTTTTTTTAACAGTGTTTTGTAGATTTCAGATGACTATGCAGAGGCCTGGGGGACCCCTGGCTCTGGGC 42 2 14 17 0 2 T/+326 0.0476 2;0 14.0 1 42.0 1 60.0 4.000 0.0741 0.0476 70 3.000 1 0 2 27 CCCCAAACATGTTGTACATT CACCATGGCCCCCTCATCAT 20:36018824-36039513 Insertion 0 2-2-2 -NA24385_chr_20_36018823_36039513 testbed 20 36033345 36033345 T TC 48 3 29 15 1 2 T/+1 0.0625 2;2 27.7 1 27.7 1 62.4 2.000 0.0488 0 7 8.000 1 2.4 2 41 ATATTTAACATGTAAAAATG CCCCCCCGCTCCGTCCCCCA 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36033345 36033345 T TC 48 3 29 15 1 2 T/+1 0.0625 2;2 26.7 1 26.7 1 60.0 2.000 0.0488 0 7 8.000 1 2.4 2 41 ATATTTAACATGTAAAAATG CCCCCCCGCTCCGTCCCCCA 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36025271 36025272 GT C 87 3 38 46 0 3 GT/-1C 0.0345 2;0 63.0 0 42.0 0 60.0 6.000 0.0349 0 0 3.000 1 1.0 3 86 CTGTGGGTGCCTGTGTGCCC GTGTCTGTGGCACACATGGC 20:36018824-36039513 Complex 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36025230 36025230 A G 78 77 0 0 21 56 G/G 0.9872 0;2 35.4 1 40.6 1 59.2 76.000 1.0000 0.0256 0 2.000 1 1.7 76 76 CCCACCCACCTGGGCATCCG AGCTGACTGCAGTGTCGGGC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36033423 36033424 AG A 48 2 21 25 1 1 G/-1 0.0417 2;2 25.0 0 42.0 0 60.0 4.000 0.0435 0 3 4.000 1 0 2 46 GCAATAACATTCCCACTGCC GGGTTCTTGAGCCAGCCAGG 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36033439 36033439 G A 44 4 19 21 0 4 G/A 0.0909 2;0 51.2 1 37.0 1 60.0 3.000 0.0714 0 0 2.000 1 1.8 3 42 TGCCAGGGGTTCTTGAGCCA CCAGGCCCTGCCAGTGGGGA 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36024417 36024417 G GGGCTGGCTGTTGAGAGACAGGGTGGGCCTGGGGCCCCGCCTGGGCCTCCCTTCCCTCCAATGTCAGGCAGGCACAGAACGGTGTCCAGAGCAGCGGCCTGCGGGGGGAGAGGGCATGGCGGTCACGGCTCCCCTCGGTGCCCCGCAGGTGCCTACTGCCTCTCAGTGTCTGACTTCGACAACGCCAAGGGCCTCAACGTGAAGCACTACAAGATCCGCAAGCTGGACAGCGGCGGCTTCTACATCACCTCCCGCACCCAGTTCAACAGCCTGCAGCAGCTGGTGGCCTACTACTCCAGTGAGCCAGCCTCGGAGGGCGGAGGGCGGGCGGGCAAAGCCTCAGCTGCAGACTCTGGGGAGGGGCCTTGGAGCCTAGAAGGGTGGGGACTTCTGTTATCCTGCTTCTCTCCCCACTTCCCCCTCCCCCCTCCCTTCCTCTCTCCTCCCTTTTCCCTCCTTTCCTTGTCTCCTTCTTCTTCCTCTTCTTTCCCCCAGCCCCCCTCCTCCCTGTCCCCCTCTCTCCCTGCTCCACGCAGTGTCCCACTGCCCGCCTTTCTCTGC 126 2 43 42 2 0 G/+560 0.0159 2;0 29.0 1 41.7 1 60.0 4.000 0.0238 0.0159 70 4.000 1 2.0 2 84 CTGCCTCTGTGGCTGCCCCG GGCTGGCTGTTGAGAGACAG 20:36018824-36039513 Insertion 0 2-0-0 -NA24385_chr_20_36018823_36039513 testbed 20 36024446 36024446 T TG 93 3 47 43 0 3 T/+1 0.0323 2;0 57.1 0 42.8 0 61.2 6.000 0.0380 0 4 5.000 1 1.7 3 79 GTTGAGAGACAGGGTGGGCC GGGGCCCCGCCTGGGCCTCC 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36024446 36024446 T TG 93 3 47 43 0 3 T/+1 0.0323 2;0 56.0 0 42.0 0 60.0 6.000 0.0380 0 4 5.000 1 1.7 3 79 GTTGAGAGACAGGGTGGGCC GGGGCCCCGCCTGGGCCTCC 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36032698 36032699 GA G 40 2 19 19 1 1 A/-1 0.0500 2;2 14.5 1 39.5 1 60.0 4.000 0.0571 0 0 2.000 1 0 2 35 ATGGAGGCAGATGTGGGGCT GCTGGGGAATCAGGGTAAAA 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36032652 36032652 C A 37 2 14 20 0 2 C/A 0.0541 2;0 10.0 0 42.0 0 60.0 4.000 0.0588 0 0 1.000 1 2.5 2 34 AGATTCCCACTGCCGCTGCC GCTCAGCCCAGCTGTTGGGA 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36024462 36024464 CCT C 91 2 45 44 0 2 C/-2 0.0220 2;0 53.0 0 39.5 1 60.0 4.000 0.0233 0 1 4.000 1 0 2 86 GGCCTGGGGCCCCGCCTGGG CCCTTCCCTCCAATGTCAGG 20:36018824-36039513 Deletion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36024518 36024518 C CG 85 2 34 44 1 1 C/+1 0.0235 2;2 27.4 1 38.2 1 62.0 4.000 0.0263 0 6 7.000 1 0 2 76 GTGTCCAGAGCAGCGGCCTG GGGGGGAGAGGGCATGGCGG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36024518 36024518 C CG 85 2 34 44 1 1 C/+1 0.0235 2;2 26.5 1 37.0 1 60.0 4.000 0.0263 0 6 7.000 1 0 2 76 GTGTCCAGAGCAGCGGCCTG GGGGGGAGAGGGCATGGCGG 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36024602 36024603 CA C 63 3 26 33 3 0 A/-1 0.0476 2;0 67.0 0 42.0 0 60.0 6.000 0.0577 0 1 2.000 1 0.3 3 52 GTGTCTGACTTCGACAACGC AGGGCCTCAACGTGAAGCAC 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36032875 36032876 CT C 39 3 19 17 0 3 T/-1 0.0769 2;0 23.7 1 40.3 1 60.0 6.000 0.0789 0 1 2.000 1 0.7 3 38 GAGGCCCTGGTCCTGGCCTC TCCCCGTACTTTGTCCCGTG 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36024680 36024681 CA C 64 2 29 33 2 0 A/-1 0.0312 2;0 28.0 0 42.0 0 60.0 4.000 0.0364 0 1 2.000 1 0 2 55 ATCACCTCCCGCACCCAGTT ACAGCCTGCAGCAGCTGGTG 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36032852 36032852 C A 39 2 19 18 0 2 C/A 0.0513 2;0 9.0 0 42.0 0 60.0 4.000 0.0513 0 0 1.000 1 1.5 2 39 ACATAGAAGAGCCAAGAGTC AGGAGGCCCTGGTCCTGGCC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36024770 36024770 T TGGGGAGGGGCCTTGGAGCCTAGAAGGGTGGGGACTTCTGTTATCCTGCTTCTCTCCCCACTTCCCCCTCCCCCCTCCCTTCCTCTCTCCTCCCTTTTCCCTCCTTTCCTTGTCTCCTTCTTCTTCCTCTTCTTTCCCCCAGCCCCCCTCCTCCCTGTCCCCCTCTCTCCCTGCTCCACGCAGTGTCCCACTGCCCGCCTTTCTCTGCAGCTGGCTGGTATGGAGGGGGCTGCCCTGAGGAGCCCCAGAGTAAGCTGGAAGGGAGG 116 5 45 40 2 3 T/+265 0.0431 2;2 33.4 1 37.0 1 60.0 10.000 0.0568 0.0431 70 6.000 1 1.0 5 88 AAAGCCTCAGCTGCAGACTC GGGGAGGGGCCTTGGAGCCT 20:36018824-36039513 Insertion 0 5-0-0 NA24385_chr_20_36018823_36039513 testbed 20 36034201 36034201 G A 52 2 26 24 2 0 G/A 0.0385 2;0 11.0 0 42.0 0 60.0 4.000 0.0385 0 0 3.000 1 2.0 2 52 GTTGTGTGTGCTCTTCGTGT TTTCCTAGGAGTGCAGGGCA 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36034263 36034263 G GA 48 4 24 20 2 2 G/+1 0.0833 2;2 50.3 1 43.1 0 61.6 8.000 0.0870 0 5 6.000 1 0 4 46 AAAGTCCTGAAAACGCTGAA AAAAATCCAAAGACCCTTCC 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36034263 36034263 G GA 48 4 24 20 2 2 G/+1 0.0833 2;2 49.0 1 42.0 0 60.0 8.000 0.0870 0 5 6.000 1 0 4 46 AAAGTCCTGAAAACGCTGAA AAAAATCCAAAGACCCTTCC 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36026238 36026239 CT C 48 2 18 27 1 1 T/-1 0.0417 2;2 18.5 1 41.4 1 60.0 4.000 0.0444 0.0208 2 3.000 1 0 2 45 GTCAAGCTGGGCCAGGGCTG TTGGCGAGGTGTGGATGGGT 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36034424 36034425 CT C 53 2 29 22 0 2 T/-1 0.0377 2;0 55.0 0 42.0 0 60.0 4.000 0.0385 0 1 2.000 1 0.5 2 52 CAACTCTGGCCACGACATTG TAATTAAAAACAAATTTCAA 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36034399 36034399 G A 63 2 32 29 2 0 G/A 0.0317 2;0 43.0 0 42.0 0 60.0 4.000 0.0333 0 1 2.000 1 1.0 2 60 AGATCACACACCTGTGCACC GAGTCAACTCTGGCCACGAC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36034549 36034551 GGT G 67 2 20 45 1 1 G/-2 0.0299 2;2 32.0 1 42.0 0 60.0 4.000 0.0312 0 19 10.000 2 0 2 64 TCTGGAGATCGCAGGGGGCG GTGTGTGTGTGTGTGTGTGG 20:36018824-36039513 Deletion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36025374 36025374 A ACCCGCCACTCTCTGTCTCTTCACTCTCTGC 67 12 36 11 6 5 A/+30 0.1791 2;2 56.9 1 39.5 1 11.9 24.000 0.2308 0.1642 21 4.000 1 0.3 12 52 TCCTGACTTCCTCTGGGATC CCCGCCACTCTCTGTCTCTT 20:36018824-36039513 Insertion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36033633 36033633 C CT 58 5 18 28 3 2 C/+1 0.0862 2;2 22.9 1 42.9 1 64.8 10.000 0.1020 0.0345 13 14.000 1 0.9 5 49 TAAGGTGTCTTAATACTGTC TTTTTTTTTTTTTAACAGTG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36025374 36025374 A ACCCGCCACTCTCTGTCTCTTCACTCTCTGC 67 12 36 11 6 5 A/+30 0.1791 2;2 50.9 1 35.2 1 10.6 24.000 0.2308 0.1642 21 4.000 1 0.3 12 52 TCCTGACTTCCTCTGGGATC CCCGCCACTCTCTGTCTCTT 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36033633 36033633 C CT 58 5 18 28 3 2 C/+1 0.0862 2;2 21.2 1 39.8 1 60.0 10.000 0.1020 0.0345 13 14.000 1 0.9 5 49 TAAGGTGTCTTAATACTGTC TTTTTTTTTTTTTAACAGTG 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36033633 36033634 CT C 55 4 22 29 1 3 T/-1 0.0727 2;2 52.8 1 40.8 1 60.0 8.000 0.0800 0 12 13.000 1 0.5 4 50 TAAGGTGTCTTAATACTGTC TTTTTTTTTTTTAACAGTGT 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36025571 36025571 C T 55 3 27 25 0 3 C/T 0.0545 2;0 12.0 0 35.3 1 60.0 6.000 0.0588 0 0 2.000 1 1.3 3 51 TGCTCCCTGCGCCCCTTTGT CTCCGCTTCTCCAGCCCTGC 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36033752 36033752 T TG 44 2 23 11 2 0 T/+1 0.0455 2;0 22.9 0 38.5 0 62.4 4.000 0.1333 0 7 8.000 1 0 2 15 AGGCCCAGACTTGCGGGGGG GGGGGGGTATCCAGAATTGG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36033752 36033752 T TG 44 2 23 11 2 0 T/+1 0.0455 2;0 22.0 0 37.0 0 60.0 4.000 0.1333 0 7 8.000 1 0 2 15 AGGCCCAGACTTGCGGGGGG GGGGGGGTATCCAGAATTGG 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36025615 36025615 T G 51 2 22 27 2 0 T/G 0.0392 2;0 22.0 0 37.0 0 60.0 4.000 0.0426 0 0 1.000 1 1.0 2 47 TGTTCTTTCCTCAGAGCCTT GCTCTGGCTGTGCCCCTGCC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36026933 36026934 CT C 66 2 34 30 1 1 T/-1 0.0303 2;2 18.5 1 42.0 1 60.0 4.000 0.0364 0.0152 0 4.000 1 0.5 2 55 CTGAGCCGCATCTCCACTCA CCCACTGCCTCCACGTTCCG 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36026891 36026891 G T 47 2 24 21 2 0 G/T 0.0426 2;0 9.0 0 37.0 1 60.0 4.000 0.0435 0 0 2.000 2 2.0 2 46 GCTAGCGGGGATCACGGTGC CTGTTTTCAAGGTGGTTTCA 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36035357 36035357 G GT 44 7 20 17 4 3 G/+1 0.1591 2;2 26.6 1 41.9 1 62.0 14.000 0.1628 0 6 7.000 1 0.3 7 43 AGCTTTTGGGGTTACAAGTG TTTTTTGGTTACTTGGATAA 20:36018824-36039513 Insertion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36035445 36035445 G GT 51 2 26 23 2 0 G/+1 0.0392 2;0 69.8 0 38.0 0 61.6 4.000 0.0408 0 5 6.000 1 0 2 49 ACGTTGCACCTAATATGTAG TTTTTAAAAATCCCACACCC 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36035357 36035357 G GT 44 7 20 17 4 3 G/+1 0.1591 2;2 25.7 1 40.6 1 60.0 14.000 0.1628 0 6 7.000 1 0.3 7 43 AGCTTTTGGGGTTACAAGTG TTTTTTGGTTACTTGGATAA 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36035445 36035445 G GT 51 2 26 23 2 0 G/+1 0.0392 2;0 68.0 0 37.0 0 60.0 4.000 0.0408 0 5 6.000 1 0 2 49 ACGTTGCACCTAATATGTAG TTTTTAAAAATCCCACACCC 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36035488 36035489 CT C 38 2 20 16 2 0 T/-1 0.0526 2;0 20.5 1 34.5 1 40.5 4.000 0.0541 0 2 3.000 1 1.0 2 37 CCTTCCTTGCTTTTTTCTTT TTCTCTTTCCTTTTCTTTTT 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36035510 36035511 CT C 38 4 18 16 2 2 T/-1 0.1053 2;2 9.0 1 33.6 1 60.0 8.000 0.1081 0.0526 2 3.000 1 0 4 37 TTCTCTTTCCTTTTCTTTTT TTATTTCCCTTTCCCCTCCC 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36027263 36027264 GA G 86 2 47 37 0 2 A/-1 0.0233 2;0 14.0 0 42.0 0 60.0 4.000 0.0244 0 1 2.000 1 0 2 82 GGTGCTCCAGGTCGACTCAT AGTGCCACATGCAGATGGCC 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36035540 36035540 T C 42 2 23 17 1 1 T/C 0.0476 2;2 23.5 1 37.0 1 60.0 4.000 0.0588 0 0 7.000 1 3.0 2 34 CTTTCCCCTCCCTCCCTCCC TTTTTTGAGATGGAGTCTTG 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36027349 36027350 GA G 82 2 33 47 0 2 A/-1 0.0244 2;0 43.0 0 42.0 0 60.0 4.000 0.0256 0 0 5.000 1 0 2 78 GACGGAGGCCCAGCGACTGG GGAACGGGCCCAAGGTCACA 20:36018824-36039513 Deletion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36035539 36035539 C CT 42 5 22 14 1 4 C/+1 0.1190 2;2 36.2 1 37.2 1 62.4 4.000 0.1053 0 7 8.000 1 0.8 4 38 CCTTTCCCCTCCCTCCCTCC TTTTTTTGAGATGGAGTCTT 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36035539 36035539 C CT 42 5 22 14 1 4 C/+1 0.1190 2;2 34.8 1 35.8 1 60.0 4.000 0.1053 0 7 8.000 1 0.8 4 38 CCTTTCCCCTCCCTCCCTCC TTTTTTTGAGATGGAGTCTT 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36034568 36035465 G 75 2 28 45 0 2 G/ 0.0267 2;0 57.0 1 41.3 1 60.0 4.000 0.0274 0.0267 0 9.000 2 0 2 73 GGGTGTGTGTGTGTGTGTGT CGCCTTCCTTGCTTTTTTCT 20:36018824-36039513 INV 0 2-0-0 NA24385_chr_20_36018823_36039513 testbed 20 36034571 36034571 G T 73 3 27 43 0 3 G/T 0.0411 2;0 17.7 1 40.3 1 60.0 6.000 0.0455 0 0 3.000 1 2.0 3 66 TGTGTGTGTGTGTGTGTGTG GTGTGGGTGTGCGTGTGTCT 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36026451 36026451 A AAACCATAGTGCCTGATTCCAAGATCCGCACAGGGCTGGGCATTGCACAGACCTGCTGTGTAGGCTGGGCCCGGTGGCCTCACTCAGAGCCTCAGTCTTCCCGACTGTGAATGGGGCTGGTGACAGTGGGACCTATGGGAGACTGTGGAGACCCTGACCCAGTGCGTGTCCACACACTAGCTGTTCGCCATGGAGAGAGAAGCCCGGCTCGCAGGAGGGAGTGCTGGGAAGCTTAGGTCTGGCATGGTCTGGGCCTGTTAGCGATTTCCCGTCTGACCCTGGAGAAACAGCAAAGCATGAGCACCGTGCAGCCCTGACAAAACCCAGACCATGC 52 4 24 22 2 2 A/+333 0.0769 2;2 65.0 1 39.5 1 60.0 8.000 0.0851 0.0769 70 3.000 1 0 4 47 CACTGTGCCCCGGACCGTGC AACCATAGTGCCTGATTCCA 20:36018824-36039513 Insertion 0 4-10-2 @@ -171,23 +171,23 @@ NA24385_chr_20_36018823_36039513 testbed 20 36036202 36036202 T TCCCTAGTGATCCCAG NA24385_chr_20_36018823_36039513 testbed 20 36028053 36028053 T TTCTCCTGCCTCAGCCTCCCGAGTATCCAGTATTACAGGCACGCACCACTACCACCTAGCTAATTTTTGTATTTTTAGTGGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAATGATCCACCCGCCTCGGCCCCCTAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCAGCCTGGACATTCTTAATAATCACAGTCCCGACAACAGCTACTGGTTCTTGAGCATTTAATCCTAGTAACAGTGCCATGAGGAGCACCCTGTCATTGTACCCATTGTACAGATGGGGAGACTGAGGCTCAGAAAGGGCCCAGGCTTTGACTGGGTTTGTCACATGGCTGTGGAGGCCACAGCTGACACTGGCGCCCAGGTGGGCAGATCCTGGATCCCTGTGTGGTAGGAGTTGGGGGGCTCCACTGAGTCAGCCTGCATCCCTCCTCAACAGGGACCTGGAACGGTACCACCAGGGTGGCCATCAAAACCCTGAAGCCTGGCACGATGTCTCCAGAGGCCTTCCTGCAGGAGGCCCAGGTCATGAAGAAGCTGAGGCATGAGAAGCTGGTGCAGTTGTATGCTGTGGTTTCAGAGGAGCCCATTTACATCGTCACGGAGTACATG 53 2 27 19 0 2 T/+637 0.0377 2;0 30.0 1 42.0 1 60.0 4.000 0.0444 0.0377 70 2.000 1 1.0 2 45 TGCCTCCCAGGCTCAAACCA TCTCCTGCCTCAGCCTCCCG 20:36018824-36039513 Insertion 0 2-2-1 NA24385_chr_20_36018823_36039513 testbed 20 36019862 36019862 C T 51 2 27 22 2 0 C/T 0.0392 2;0 50.0 0 42.0 0 60.0 4.000 0.0400 0 0 1.000 1 1.0 2 50 TGGTAAATGGAGGCTTTGAA TGAAAGATCTCAGAGAGCTG 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36036290 36036290 T A 88 2 39 47 0 2 T/A 0.0227 2;0 6.0 0 42.0 0 60.0 4.000 0.0244 0 0 2.000 2 1.0 2 82 CTGCCTCTCCCACTCCTGTC CTGGCTCCTTCTCCGGTTGG 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36028123 36028123 A AT 56 3 24 29 0 3 A/+1 0.0536 2;0 55.4 0 43.1 0 51.3 6.000 0.0612 0 5 6.000 1 0 3 49 ACCACCTAGCTAATTTTTGT TTTTTAGTGGAGACAGGGTT 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36028123 36028123 A AT 56 3 24 29 0 3 A/+1 0.0536 2;0 54.0 0 42.0 0 50.0 6.000 0.0612 0 5 6.000 1 0 3 49 ACCACCTAGCTAATTTTTGT TTTTTAGTGGAGACAGGGTT 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36028200 36028200 C T 55 3 26 26 0 3 C/T 0.0545 2;0 61.0 0 42.0 0 60.0 6.000 0.0588 0 0 2.000 1 1.0 3 51 CTCAAATGATCCACCCGCCT GGCCCCCTAAAGTGCTGGGA 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36036448 36036448 C A 65 3 20 42 3 0 C/A 0.0462 2;0 7.0 0 42.0 0 60.0 6.000 0.0476 0 1 1.000 1 1.0 3 63 GGGCCACAGTCTCCTGGCCC GCTGTCCCCTCCTTCGGCCC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36020078 36020079 GA G 53 2 27 24 2 0 A/-1 0.0377 2;0 33.0 0 42.0 0 60.0 4.000 0.0426 0 2 3.000 1 0 2 47 ACCACCCTGGCCAACATGGT AACCCCGTCTCTACTAAAAA 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36036468 36036468 C A 73 3 28 42 3 0 C/A 0.0411 2;0 20.0 0 42.0 0 60.0 6.000 0.0429 0 0 1.000 1 2.0 3 70 CGCTGTCCCCTCCTTCGGCC TGTGTAGTGTCCAGGTGTCT 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36020054 36020054 C T 55 2 29 24 0 2 C/T 0.0364 2;0 40.0 0 42.0 0 24.0 4.000 0.0377 0 2 1.000 1 1.0 2 53 ATCACTTGAGGTCAGGAGTT GAGACCACCCTGGCCAACAT 20:36018824-36039513 SNV 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36036518 36036518 G GC 69 2 25 41 0 2 G/+1 0.0290 2;0 18.0 1 40.6 1 61.6 4.000 0.0303 0 5 6.000 1 2.1 2 66 ATGAGACCCCAGGGCTCCAT CCCCCTCAGCCTTTCCTTTC 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36036518 36036518 G GC 69 2 25 41 0 2 G/+1 0.0290 2;0 17.5 1 39.5 1 60.0 4.000 0.0303 0 5 6.000 1 2.1 2 66 ATGAGACCCCAGGGCTCCAT CCCCCTCAGCCTTTCCTTTC 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36020121 36020121 G A 42 3 19 20 0 3 G/A 0.0714 2;0 31.0 0 42.0 0 60.0 6.000 0.0789 0 0 1.000 1 1.0 3 38 ACAAAAATTAGCTGGGCATG TGGGGCTTGCCTGTAATCCC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36036506 36036506 C T 76 3 25 48 3 0 C/T 0.0395 2;0 58.0 0 42.0 0 60.0 6.000 0.0448 0 0 4.000 1 2.0 3 67 TCTCCCGGGGATATGAGACC CAGGGCTCCATGCCCCCTCA 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36036590 36036591 GA G 88 2 34 52 1 1 A/-1 0.0227 2;2 23.5 1 42.0 0 60.0 4.000 0.0250 0 3 4.000 1 0 2 80 ATGCATTTTTTTCTTTTTGA AAACTAAAATGTTTCCCCCA 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36028406 36028406 C CATGGCTGTGGAGGCCACAGCTGACACTGGCGCCCAGGTGGGCAGATCCTGGATCCCTGTGTGGTAGGAGTTGGGGGGCTCCACTGAGTCAGCCTGCATCCCTCCTCAACAGGGACCTGGAACGGTACCACCAGGGTGGCCATCAAAACCCTGAAGCCTGGCACGATGTCTCCATAGGCCTTCCTGCAGGAGGCCCAGGTCATGAAGAAGCTGAGGCATG 49 3 29 17 1 2 C/+219 0.0612 2;2 48.7 1 39.2 1 60.0 6.000 0.0638 0.0612 70 2.000 3 0.7 3 47 GGCTTTGACTGGGTTTGTCA ATGGCTGTGGAGGCCACAGC 20:36018824-36039513 Insertion 0 3-0-0 NA24385_chr_20_36018823_36039513 testbed 20 36036602 36036603 GT G 92 2 42 46 0 2 T/-1 0.0217 2;0 58.0 0 42.0 0 60.0 4.000 0.0238 0 2 3.000 1 0 2 84 CTTTTTGAGAAAACTAAAAT TTCCCCCATGACAAAAAAAG 20:36018824-36039513 Deletion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36036574 36036574 A AT 85 4 32 47 1 3 A/+1 0.0471 2;2 41.6 1 41.1 1 62.4 8.000 0.0541 0 7 8.000 1 0.3 4 74 TTACTCTTAATTCTGCATGC TTTTTTTCTTTTTGAGAAAA 20:36018824-36039513 Insertion 0 0 -NA24385_chr_20_36018823_36039513 testbed 20 36027439 36027439 T TC 87 3 30 51 0 3 T/+1 0.0345 2;0 40.4 1 33.7 1 61.6 6.000 0.0429 0.0115 5 6.000 1 1.0 3 70 TGCTGGTCTAGAATGCAGCT CCCCCAGAGCCCCACAGTTA 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36036574 36036574 A AT 85 4 32 47 1 3 A/+1 0.0471 2;2 40.0 1 39.5 1 60.0 8.000 0.0541 0 7 8.000 1 0.3 4 74 TTACTCTTAATTCTGCATGC TTTTTTTCTTTTTGAGAAAA 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36027439 36027439 T TC 87 3 30 51 0 3 T/+1 0.0345 2;0 39.3 1 32.8 1 60.0 6.000 0.0429 0.0115 5 6.000 1 1.0 3 70 TGCTGGTCTAGAATGCAGCT CCCCCAGAGCCCCACAGTTA 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36035588 36035588 C G 60 4 30 26 4 0 C/G 0.0667 2;0 9.0 0 42.0 0 60.0 8.000 0.0727 0 0 1.000 1 3.5 4 55 CCTAGTCTGGAGTGCAGTGA TCACTGCAACCTCCACCTCC 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36035596 36035598 AAC A 60 3 31 23 3 0 A/-2 0.0500 2;0 18.0 0 42.0 0 60.0 6.000 0.0682 0 0 2.000 1 3.7 3 44 GGAGTGCAGTGACTCACTGC CTCCACCTCCTGGGCTCAAG 20:36018824-36039513 Deletion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36027746 36027746 G C 37 2 12 23 0 2 G/C 0.0541 2;0 7.0 0 42.0 0 60.0 4.000 0.0556 0 1 1.000 1 1.0 2 36 GGCGGGTGGGCTCCAGAGGT ACCTCTTGTTCTGGCAACAG 20:36018824-36039513 SNV 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36035909 36035909 T TTCTCTAGTCCCCACCCTCCCTTTCTGCCTCTCAGATTTTTCTCCCCATCCACCTCTTCACATCTCTGACTCTTCCCAGGCCCTCCCACACCTCCATGCCTTTGCCCAGGCTGTTTTCACCGCTGAGAATGCCCTTTCTTCCCTCTCTACAACCTGGCAAACTCCTATTCATCCTGCAAAGCACATCTCCGAGGCCACAGACCGGCCCTGGGAGC 84 3 48 36 0 3 T/+214 0.0357 2;0 52.0 1 40.0 1 60.0 6.000 0.0366 0.0357 70 3.000 1 0 3 82 TGCCTGGGTGCTGTCTCTCT TCTCTAGTCCCCACCCTCCC 20:36018824-36039513 Insertion 0 3-11-2 -NA24385_chr_20_36018823_36039513 testbed 20 36027721 36027721 T TG 44 3 11 29 3 0 T/+1 0.0682 2;0 61.0 1 31.0 1 62.0 2.000 0.0513 0 6 7.000 1 3.4 2 39 CTTAGGACAGTGTCTCATTT GGGGGGCGGGTGGGCTCCAG 20:36018824-36039513 Insertion 0 0 +NA24385_chr_20_36018823_36039513 testbed 20 36027721 36027721 T TG 44 3 11 29 3 0 T/+1 0.0682 2;0 59.0 1 30.0 1 60.0 2.000 0.0513 0 6 7.000 1 3.4 2 39 CTTAGGACAGTGTCTCATTT GGGGGGCGGGTGGGCTCCAG 20:36018824-36039513 Insertion 0 0 NA24385_chr_20_36018823_36039513 testbed 20 36019548 36019548 A T 50 2 23 25 0 2 A/T 0.0400 2;0 8.0 0 42.0 0 60.0 4.000 0.0476 0 0 2.000 2 1.0 2 42 TGGGTGGCTGGAGACTCCCC GAGGCCGGCCAGCCTGCGGA 20:36018824-36039513 SNV 0 0 \ No newline at end of file diff --git a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_38386265-38409801.bam;chr20;38386265;38409801;-f0.001.txt b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_38386265-38409801.bam;chr20;38386265;38409801;-f0.001.txt index cc90e12..2fe8852 100644 --- a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_38386265-38409801.bam;chr20;38386265;38409801;-f0.001.txt +++ b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_38386265-38409801.bam;chr20;38386265;38409801;-f0.001.txt @@ -1,11 +1,11 @@ Simple,GRCh37.fa,NA24385_chr_20_38386265_38409801.bam,chr20,38386265,38409801,-f 0.001 NA24385_chr_20_38386265_38409801 testbed 20 38404686 38404686 T TTATTTATGGGGGTTTATAGTACAGTAAACCATTAGGTTGGTGCAAAAGTCATTGTGGTTTTTGCCTTTAATTTCAATGTCAAAAACCACAATGACTTTTGCAGCAATCTAATAGTTTCTATTTTCTGCCCATCTCCTACACCTTCATCTCTCTTGGATTTGCCATCACCTAGAATGTGCCTC 88 2 38 39 0 2 T/+182 0.0227 2;0 28.5 1 40.8 1 60.0 4.000 0.0274 0.0227 70 2.000 1 2.0 2 73 GTTTTCACCTTTGCTTTCCA TATTTATGGGGGTTTATAGT 20:38386266-38409801 Insertion 0 2-2-1 NA24385_chr_20_38386265_38409801 testbed 20 38388311 38388311 A C 90 3 46 41 0 3 A/C 0.0333 2;0 8.0 0 37.0 1 60.0 6.000 0.0353 0 0 2.000 2 1.0 3 85 TGCCACCCACCTTGCAAGGC GAGGCTTAAACTCTCGTCTT 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38388329 38388329 C CT 82 3 34 44 3 0 C/+1 0.0366 2;0 44.1 0 43.1 0 61.6 6.000 0.0390 0 5 6.000 1 0 3 77 GCAGAGGCTTAAACTCTCGT TTTTTGCTCCATTCATATCC 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38388329 38388329 C CT 82 3 34 44 3 0 C/+1 0.0366 2;0 43.0 0 42.0 0 60.0 6.000 0.0390 0 5 6.000 1 0 3 77 GCAGAGGCTTAAACTCTCGT TTTTTGCTCCATTCATATCC 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38404722 38404722 G A 82 5 40 37 3 2 G/A 0.0610 2;2 15.6 1 39.3 1 60.0 10.000 0.0633 0.0244 0 2.000 1 2.2 5 79 ATAGTACAGTAAACCATTAG TTGGTGCAAAAGTCATTGTG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38404726 38404726 G C 82 6 41 34 1 5 G/C 0.0732 2;2 22.0 1 41.2 1 60.0 12.000 0.0779 0 1 1.000 1 2.2 6 77 TACAGTAAACCATTAGGTTG TGCAAAAGTCATTGTGGTTT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38404843 38404844 AT A 90 2 50 38 1 1 T/-1 0.0222 2;2 37.0 1 39.5 1 60.0 4.000 0.0235 0 2 3.000 1 1.0 2 85 TACACCTTCATCTCTCTTGG TTGCCATCACCTAGAATGTG 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38404766 38404766 C CA 96 2 57 36 2 0 C/+1 0.0208 2;0 46.2 0 43.1 0 61.6 4.000 0.0225 0 5 6.000 1 1.0 2 89 TTTGCCTTTAATTTCAATGT AAAAACCACAATGACTTTTG 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38404766 38404766 C CA 96 2 57 36 2 0 C/+1 0.0208 2;0 45.0 0 42.0 0 60.0 4.000 0.0225 0 5 6.000 1 1.0 2 89 TTTGCCTTTAATTTCAATGT AAAAACCACAATGACTTTTG 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38404793 38404793 T C 90 4 53 33 2 2 T/C 0.0444 2;2 11.2 1 37.0 1 60.0 3.000 0.0361 0 1 1.000 1 1.8 3 83 CACAATGACTTTTGCAGCAA CTAATAGTTTCTATTTTCTG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38404957 38405323 TTTCACAAGAACCCCAACCTCAGGTCTTCTCTCTCTCCTCTGAACTGAGGGGATGAACACTTTGCAGCAAGTTTAGAGATTTTTACCTCATACTTCCTTGCATTGTCCATTTCCTTTATAACTGAAGAGAAATGGCCGTATCTTATCACTCTTTCAGTTTCTTCCATATGCTATTATGGAGTAGTTAAAAATAGCTTATGGATTAAGGAAATAATTTAACAAAAAGGATATGGTGGGCAGCTTCTAAGAGGGCACTATGATCCCCACCTCCTGGTATTCACGTCATTATGTAACCTTCTCCCCTTGAGTGTGGGCAGAACCTGTGACTTTCCTCTAGCCAATACAATACAGCAATACTTATAGGCTG AATGACGTGAATACCAGGAGGTGGGGATCATAGTGCCCTCTTAGAAGCTGC 122 4 48 33 1 3 T/-367iAATGACGTGAATACCAGGAGGTGGGGATCATAGTGCCCTCTTAGAAGCTGC 0.0328 2;2 33.8 1 41.4 1 60.0 8.000 0.0476 0.0328 0 1.000 1 0 4 84 GTTGCTGCCTTCATTAAGCT CCACGTCTATGGTTAGGTTA 20:38386266-38409801 Complex 0 2-24-2 NA24385_chr_20_38386265_38409801 testbed 20 38404957 38404957 T TTTCACAAGAACCCCAACCTCAGGTCTTCTCTCTCTCCTCTGAACTGAGGGGATGAACACTTTGCAGCAAGTTTAGAGATTTTTACCTCATACTTCCTTGCATTGTCCATTTCCTTTATAACTGAAGAGAAATGGCCGTATCTTATCACTCTTTCAGTTTCTTCCATATGCTATTATGGAGTAGTTAAAAATAGCTTATGGATTAAGGAAATAATTTAACAAAAAGGATATGGTGGGCAGCTTCTAAGAGGGCACTATGATCCCCACCTCCTGGTATTCACGTCATTATGTAACCTTCTCCCCTTGAGTGTGGGCAGAACCTGTGACTTTCCTCTAGCCAATACAATACAGCAATACTTATAGGCTGCCACGTCTATGGTTAGGTTATGTAAAGTTGTGAATTCCATCTTGTTAGTAGACTCTCACTGGCTTTGAAGAAGCAAGCATCCATGTTGGGAAGGCCTACCTGGCAAGGAAATGAGGGCAGACTACAGCCAAGGAGAAACTGAGGCTCTCAGCCC 122 2 48 33 2 0 T/+520 0.0164 2;0 17.5 1 38.7 1 47.0 4.000 0.0238 0.0164 70 4.000 1 0 2 84 GTTGCTGCCTTCATTAAGCT TTCACAAGAACCCCAACCTC 20:38386266-38409801 Insertion 0 2-24-2 @@ -18,7 +18,7 @@ NA24385_chr_20_38386265_38409801 testbed 20 38388624 38388624 A G 74 2 35 36 0 2 NA24385_chr_20_38386265_38409801 testbed 20 38405035 38405036 AT A 101 2 43 56 0 2 T/-1 0.0198 2;0 26.0 0 42.0 0 60.0 4.000 0.0230 0 4 5.000 1 0 2 87 ACTTTGCAGCAAGTTTAGAG TTTTACCTCATACTTCCTTG 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38404181 38404181 A T 83 2 33 48 1 1 A/T 0.0241 2;2 12.5 1 37.0 0 60.0 4.000 0.0253 0 1 1.000 1 1.0 2 79 TCAGCAGGAAAGAGAAACTC CTGTGTTTCTGAGCCAGGAA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38387957 38387957 A T 83 3 37 43 3 0 A/T 0.0361 2;0 7.0 0 42.0 0 60.0 6.000 0.0385 0 0 3.000 1 1.3 3 78 GGACCGTTATCCCATTTCTT AAGAAAGAGGCCCAGGGGGC 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38387851 38387851 T TA 84 2 38 42 1 1 T/+1 0.0238 2;2 25.2 1 43.1 0 61.6 4.000 0.0263 0 5 6.000 1 0.5 2 76 TGACAATAAAGATAGTAATA AAAAACAAGTTGTACAGGGC 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38387851 38387851 T TA 84 2 38 42 1 1 T/+1 0.0238 2;2 24.5 1 42.0 0 60.0 4.000 0.0263 0 5 6.000 1 0.5 2 76 TGACAATAAAGATAGTAATA AAAAACAAGTTGTACAGGGC 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38404441 38404441 G A 64 2 33 28 2 0 G/A 0.0312 2;0 41.0 0 42.0 0 60.0 4.000 0.0328 0 0 1.000 1 2.0 2 61 CTGAGTCACAGATTTAGTTT CAGTGGCCCAATGTTGTCCC 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38388172 38388172 C T 72 2 43 27 0 2 C/T 0.0278 2;0 7.0 0 37.0 1 60.0 4.000 0.0290 0 0 3.000 1 1.0 2 69 AGAGAGAGAAGAGGAAAATG AAAGGTAACCAGGGGAGTAG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38388178 38388179 TA T 72 2 43 26 0 2 A/-1 0.0278 2;0 58.0 0 42.0 0 60.0 4.000 0.0290 0 1 2.000 1 0 2 69 AGAAGAGGAAAATGCAAAGG ACCAGGGGAGTAGAATGTTC 20:38386266-38409801 Deletion 0 0 @@ -28,13 +28,13 @@ NA24385_chr_20_38386265_38409801 testbed 20 38404486 38404486 T TGCAATCCTCTTGGTT NA24385_chr_20_38386265_38409801 testbed 20 38388112 38388565 C 65 3 28 37 3 0 C/ 0.0462 2;0 36.0 1 35.6 1 60.0 6.000 0.0448 0.0462 0 2.000 1 0.3 3 67 TCTCCTTACCACATATTAAG GTGACAAGTACTTTCTTTTC 20:38386266-38409801 INV 0 3-3-1 NA24385_chr_20_38386265_38409801 testbed 20 38405699 38405699 T TAATTTGGTACACAGTGATGGATAATACAGGAAGGTTCAGCAGACAAAGCCTTTTTGGAAGAATTCAAATGGATTGAAAAGTATAACTAAGGAAAGCAAGAGAGTGAGGTGACATTTGAGGCTGGGGAAGTGTGTGAGCAATGGCTTTATGGAATGTTCACAAAAGAGTTCCAGGCAGACCTGGAGATGTAGACAGGAAGCTAACTGGGGAGGCCTTAAAGCAAAAAGAAGAAAAAAAATACCAAGCCAGAAGAAAGAAAAATGGTGACAATGTAGAGAAATTGTGATAGTGAGGGGATACCTCCATGAACATTGAGAATGAGAGAAGACGGAGATGCTCCATTCATACCAGATGGCCTTTACCTTCGTATAAATGCAGGTTCTCAGGTTATCTGCTGAAAGCAAGAGAGGAAGAGGGCTTTTTAGTGTAACAATACTATTGATGACAATAAGTCACCATTTTACATCTCACTTAGGCCTCACAGCCTCCTTATGAGAGGTTTTATTTCCATCTACACTTTGTAGATAAAGATTAAAACATTCAGAGAGATTAAGTTACTTGCTAATTGTCATCCAGTTCAGAAGTGGCAGAATTTGGAAACAAACTCAGATCCTAGAGCCATGGTGTCATACTGAGGTTCTGGAACATTTTTCTGCAGATGCTGTGGGGAACATGCTCTTTGCCAGTGCTGTTTTACTGCTCTGTGTCAAGAGTGCTTTGGGAACAGTGACAGAAAACATGATGGGTTTAGACTCAGAAGGAGGAAGTGGTAGAAAACATGATGGGTTTAGATTCAGGAGGAGAAGGTGGTACAAAACATAATGAGTTTCACCTCAGGAGGAGGAAGTCTAGCAGGAGATAGAAACAGGCAGAAGAGAGGCTTTTTTATTGAGAAGACATGAAGTAATCTAGTGTATCAAGGTA 118 2 51 66 0 2 T/+924 0.0169 2;0 72.0 1 37.8 1 60.0 4.000 0.0180 0.0169 70 3.000 1 0 2 111 TTAGTCCATTATATTTGTGG AATTTGGTACACAGTGATGG 20:38386266-38409801 Insertion 0 2-2-1 NA24385_chr_20_38386265_38409801 testbed 20 38389350 38389350 T C 101 4 62 34 0 4 T/C 0.0396 2;0 7.0 0 42.0 0 60.0 8.000 0.0417 0 0 1.000 1 1.5 4 96 CTACTAGGAATTTTCTTGGC ACAGTCAGGGACATTGTTCA 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38405636 38405636 T TTGCTGACCCACAGAAATTACAAGATGATAAATGCATGTTGTGTTAGTCCATTATATTTGTGGTAATTTGGTACACAGTGATGGATAATAGAGGAAGGTTCAGCAGACAAAGCCTTTTTGGAAGGGCTTTGTC 118 4 19 29 3 1 T/+132 0.0339 2;2 51.6 1 47.8 1 71.4 8.000 0.0816 0.0254 70 2.000 1 0 4 49 CCATGTAAACTGTGCCCTCG TGCTGACCCACAGAAATTAC 20:38386266-38409801 Insertion 0 4-1-1 +NA24385_chr_20_38386265_38409801 testbed 20 38405636 38405636 T TTGCTGACCCACAGAAATTACAAGATGATAAATGCATGTTGTGTTAGTCCATTATATTTGTGGTAATTTGGTACACAGTGATGGATAATAGAGGAAGGTTCAGCAGACAAAGCCTTTTTGGAAGGGCTTTGTC 118 4 19 29 3 1 T/+132 0.0339 2;2 38.9 1 36.0 1 53.8 8.000 0.0816 0.0254 70 2.000 1 0 4 49 CCATGTAAACTGTGCCCTCG TGCTGACCCACAGAAATTAC 20:38386266-38409801 Insertion 0 4-1-1 NA24385_chr_20_38386265_38409801 testbed 20 38389277 38389278 AT A 78 2 40 36 2 0 T/-1 0.0256 2;0 15.0 0 42.0 0 60.0 4.000 0.0260 0 1 2.000 1 1.0 2 77 GCACTCTATATTCCTGTTTT TAACCTATCAGTGAGGCAGA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38389475 38389507 ATTCTAACACCTCATCTTTCTCTAAGGTTAAGC A 94 4 40 50 0 4 T/-32 0.0426 2;0 43.0 1 39.7 1 60.0 8.000 0.0444 0.0426 1 1.000 1 0 4 90 AAAATCTTGGCCACTTTTCC TAACCTGGTGAGCAGTTCCT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38405881 38405881 G T 105 4 51 50 0 4 G/T 0.0381 2;0 14.0 0 42.0 0 60.0 8.000 0.0396 0 1 2.000 1 1.0 4 101 AAAGAGTTCCAGGCAGACCT GAGATGTAGACAGGAAGCTA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38405804 38405805 GA G 111 2 54 55 2 0 A/-1 0.0180 2;0 31.0 0 39.5 1 60.0 4.000 0.0190 0 0 3.000 1 1.0 2 105 ACTAAGGAAAGCAAGAGAGT GGTGACATTTGAGGCTGGGG 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38389428 38389428 T C 98 2 54 42 0 2 T/C 0.0204 2;0 6.0 0 42.0 0 60.0 4.000 0.0222 0 0 1.000 1 1.0 2 90 ATTAGGCACTCATTGGCTTT CTGAGAAAAATGAGCTCAGG 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38389573 38389573 G GA 72 2 27 41 0 2 G/+1 0.0278 2;0 54.9 1 43.1 0 61.6 4.000 0.0308 0 5 6.000 1 1.0 2 65 AGTCAGCTTTAGGGAAATGA AAAAACAGTCAAAATAATGC 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38389573 38389573 G GA 72 2 27 41 0 2 G/+1 0.0278 2;0 53.5 1 42.0 0 60.0 4.000 0.0308 0 5 6.000 1 1.0 2 65 AGTCAGCTTTAGGGAAATGA AAAAACAGTCAAAATAATGC 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38389585 38389588 AAAT A 69 2 27 39 0 2 A/-3 0.0290 2;0 57.0 0 42.0 0 60.0 4.000 0.0345 0 3 4.000 1 1.0 2 58 GGAAATGAGAAAAACAGTCA AATGCAGCCCACGTGACACT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38405903 38406183 C 101 2 48 51 1 1 C/ 0.0198 2;2 44.0 1 36.6 1 60.0 4.000 0.0215 0.0198 1 2.000 1 0.5 2 93 AGATGTAGACAGGAAGCTAA CCTCCTTATGAGAGGTTTTA 20:38386266-38409801 INV 0 2-0-0 NA24385_chr_20_38386265_38409801 testbed 20 38389519 38389519 G C 88 88 0 0 40 48 C/C 1.0000 0;2 35.0 1 38.7 1 58.2 10.000 1.0000 0.0455 0 1.000 1 1.5 80 80 AGGTTAAGCTAACCTGGTGA CAGTTCCTAGCCTGGAATAG 20:38386266-38409801 SNV 0 0 @@ -46,7 +46,7 @@ NA24385_chr_20_38386265_38409801 testbed 20 38406112 38406113 GA G 90 3 41 44 0 NA24385_chr_20_38386265_38409801 testbed 20 38406040 38406041 AT A 102 3 53 46 3 0 T/-1 0.0294 2;0 32.0 0 42.0 0 60.0 6.000 0.0312 0 1 2.000 1 0.3 3 96 AGAGAAGACGGAGATGCTCC TCATACCAGATGGCCTTTAC 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38406061 38406063 CCT A 98 2 54 42 1 1 CT/-2A 0.0204 2;2 34.5 1 42.0 0 60.0 4.000 0.0213 0 0 2.000 1 0.5 2 94 TTCATACCAGATGGCCTTTA TCGTATAAATGCAGGTTCTC 20:38386266-38409801 Complex 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38388800 38388800 A G 89 4 41 44 0 4 A/G 0.0449 2;0 15.5 1 39.5 1 60.0 8.000 0.0482 0 1 1.000 1 4.2 4 83 AAATATTCACTGAGTCATAA GTGATTAAAAATTCAGGCTC 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38388806 38388806 T TA 84 2 35 46 0 2 T/+1 0.0238 2;0 46.7 1 43.1 0 61.6 4.000 0.0247 0 5 6.000 1 0.5 2 81 TCACTGAGTCATAAAGTGAT AAAAATTCAGGCTCTAGAAT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38388806 38388806 T TA 84 2 35 46 0 2 T/+1 0.0238 2;0 45.5 1 42.0 0 60.0 4.000 0.0247 0 5 6.000 1 0.5 2 81 TCACTGAGTCATAAAGTGAT AAAAATTCAGGCTCTAGAAT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38405200 38405200 C CTAAGAGGGCACTATGATCCCCACCTCCTGGTATTCACGTCATTATGTAACCTTCTCCCCTTGAGTGTGGGCAGAACCTGTGACTTTCCTCTAGCCAATACAATACAGCAATACTTATAGGCTGCCACGTCTATGGTTAGGTTATGTAAAGTTGTGAATTCCATCTTGTTAGTAGACTCTCACTGGCTTTGAAGAAGCAAGCATCCATGTTGGGAAGGCCTACCTGGCAAGGAAATGAGGGCAGACTACAGCCAAGGAGAAACTGAGGCTCTCAGCCCCACAGCCATTAAAGAACTGAGTTTCGCCATCAACTCCATGAGGTTAGAAGCAGATCCTTCACAGTGCAGCCTTCAGATGAGACCTCAACCCTGGCTGACGGTTTCAGTTATACTTTGAGACACCCTGAACCAGACAGCCCATGTAAACTGTGCCCTCGTTGCTGACCCACAGAAATTACAAGATGATAAATGCATGTTGTGTTAGTCCATTATATTTGTGGTAATTTGGTACACAGTGATGGATAA 126 2 66 59 0 2 C/+523 0.0159 2;0 37.0 1 41.2 1 60.0 4.000 0.0167 0.0159 70 2.000 1 0 2 120 AAGGATATGGTGGGCAGCTT TAAGAGGGCACTATGATCCC 20:38386266-38409801 Insertion 0 2-24-2 NA24385_chr_20_38386265_38409801 testbed 20 38405218 38405218 C CCCCACCTCCTGGTATTCACGTCATTATGTAACCTTCTCCCCTTGAGTGTGGGCAGAACCTGTGACTTTCCTCTAGCCAATACAATACAGCAATACTTATAGGCTGCCACGTCTATGGTTAGGTTATGTAAAGTTGTGAATTCCATCTTGTTAGTAGACTCTCACTGGCTTTGAAGAAGCAAGCATCCATGTTGGGAAGGCCTACCTGGCAAGGAAATGAGGGCAGACTACAGCCAAGGAGAAACTGAGGCTCTCAGCCCCACAGCCATTAAAGAACTGAGTTTCGCCATCAACTCCATGAGGTTAGAAGCAGATCCTTCACAGTGCAGCCTTCAGATGAGACCTCAACCCTGGCTGACGGTTTCAGTTATACTTTGAGACACCCTGAACCAGACAGCCCATGTAAACTGTGCCCTCGTTGCTGACCCACAGAAATTACAAGATGAT 112 2 53 57 1 1 C/+446 0.0179 2;2 33.5 1 36.6 1 60.0 4.000 0.0185 0.0179 70 4.000 1 0.5 2 108 TTCTAAGAGGGCACTATGAT CCCACCTCCTGGTATTCACG 20:38386266-38409801 Insertion 0 2-24-2 NA24385_chr_20_38386265_38409801 testbed 20 38388861 38388861 T A 66 3 22 41 0 3 T/A 0.0455 2;0 9.0 0 42.0 0 60.0 6.000 0.0492 0 2 1.000 1 2.7 3 61 ATGCAGTACAGCCCTGACAT GTTTAAACTATGTAAATCTT 20:38386266-38409801 SNV 0 0 @@ -65,12 +65,12 @@ NA24385_chr_20_38386265_38409801 testbed 20 38390342 38390342 C G 88 87 0 0 30 5 NA24385_chr_20_38386265_38409801 testbed 20 38406955 38406955 C T 94 2 48 44 0 2 C/T 0.0213 2;0 57.0 0 42.0 0 60.0 4.000 0.0222 0 0 2.000 1 2.0 2 90 AAAGCCTCTATTTTCTGTTT CATCTTTATGAGTCAAGCAG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38406969 38406970 CA C 85 3 46 36 3 0 A/-1 0.0353 2;0 32.0 0 40.3 1 60.0 6.000 0.0375 0 1 2.000 1 0.7 3 80 CTGTTTCCATCTTTATGAGT AGCAGTTGTTATCATGTTTT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38390578 38390578 T TTAGTCATATCCCAAGGAAGTGGTCAGGATGCTCAGATTTTACTTAATACCCTTATGAGAAATTATTTTGACTTTTTACTCCTCCACTAGGTGGTTAAACAGTGAATTTCCTTGTTTGAAGAATGCATTGATTATGTGCCAGGCAGTGTGCTAGATGCTTATACAGATTACCTAATTTAATTATCCTAATGTTCCTTTGTGGGAAGTAGTAGTATTATTACTGTTATCCAGACAAAAAGACTGGGTTCCAGAGAGATTTATCACTTGCCCAAATAAAGTGGAAGAACCAGAATTTAAAGCAGTCTTGTAACTTTGAAGACAATTTGCTCCTCTGATGTTTCCATTTTAAGGCCTCTGTTTTGCAGAGCTCTAGC 71 2 44 23 2 0 T/+373 0.0282 2;0 28.0 1 38.5 1 60.0 4.000 0.0333 0.0282 70 2.000 1 1.0 2 60 CCATTCCTTGTATGTTTATC TAGTCATATCCCAAGGAAGT 20:38386266-38409801 Insertion 0 2-3-1 -NA24385_chr_20_38386265_38409801 testbed 20 38407148 38407148 G GA 104 2 41 58 1 1 G/+1 0.0192 2;2 53.9 1 43.1 0 61.6 4.000 0.0208 0 5 6.000 1 1.0 2 96 GAAGCATTTTCCAACTTTCA AAAAAGAGTGATGGTGTGCT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38407148 38407148 G GA 104 2 41 58 1 1 G/+1 0.0192 2;2 52.5 1 42.0 0 60.0 4.000 0.0208 0 5 6.000 1 1.0 2 96 GAAGCATTTTCCAACTTTCA AAAAAGAGTGATGGTGTGCT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38407148 38407149 GA G 101 3 41 56 0 3 A/-1 0.0297 2;0 42.0 0 42.0 0 60.0 6.000 0.0306 0 4 5.000 1 1.0 3 98 GAAGCATTTTCCAACTTTCA AAAAGAGTGATGGTGTGCTC 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38390711 38390711 A G 103 2 49 52 0 2 A/G 0.0194 2;0 29.5 1 34.5 1 60.0 4.000 0.0202 0 1 1.000 1 3.0 2 99 GTTTGAAGAATGCATTGATT TGTGCCAGGCAGTGTGCTAG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38389791 38389791 C T 64 61 0 0 35 26 T/T 0.9531 0;2 36.5 1 39.2 1 60.0 19.333 0.9508 0.0469 3 3.000 1 2.0 58 61 TAAAAAACTTTTTGGAATAA TTTAGATTTGTATAAAGGTC 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38389790 38389791 AC A 64 3 0 0 2 1 T/-1 0.0469 0;2 14.3 1 34.8 1 60.0 6.000 0.0492 0.0312 0 2.000 1 3.0 3 61 TTAAAAAACTTTTTGGAATA TTTAGATTTGTATAAAGGTC 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38389778 38389778 C CT 55 2 30 23 0 2 C/+1 0.0364 2;0 61.6 0 43.1 0 61.6 4.000 0.0392 0 5 6.000 1 2.1 2 51 CATTTAAATAAATTAAAAAA TTTTTGGAATAACTTTAGAT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38389778 38389778 C CT 55 2 30 23 0 2 C/+1 0.0364 2;0 60.0 0 42.0 0 60.0 4.000 0.0392 0 5 6.000 1 2.1 2 51 CATTTAAATAAATTAAAAAA TTTTTGGAATAACTTTAGAT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38406356 38406356 A G 83 3 44 36 3 0 A/G 0.0361 2;0 35.0 0 31.7 1 60.0 2.000 0.0250 0 0 1.000 1 1.0 2 80 GTTCTGGAACATTTTTCTGC GATGCTGTGGGGAACATGCT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38406325 38406326 GT G 86 2 54 30 1 1 T/-1 0.0233 2;2 38.5 1 42.0 0 60.0 4.000 0.0241 0 0 1.000 1 0 2 83 TCAGATCCTAGAGCCATGGT CATACTGAGGTTCTGGAACA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38390137 38390137 C A 112 2 62 48 1 1 C/A 0.0179 2;2 38.0 1 42.0 0 60.0 4.000 0.0189 0 0 2.000 1 1.0 2 106 TCTGCAGACTGTAAGAAGCC AACACCTCCATCTGCTTCCT 20:38386266-38409801 SNV 0 0 @@ -83,16 +83,16 @@ NA24385_chr_20_38386265_38409801 testbed 20 38390246 38390247 GA G 87 2 31 54 0 NA24385_chr_20_38386265_38409801 testbed 20 38406531 38406531 C CCTCCTCCTGAGGTGAAA 82 2 44 35 1 1 C/+17 0.0244 2;2 12.5 1 39.8 1 60.0 4.000 0.0253 0.0244 3 3.000 1 0.5 2 79 ACAAAACATAATGAGTTTCA CTCAGGAGGAGGAAGTCTAG 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38390202 38390203 GA G 88 2 41 45 0 2 A/-1 0.0227 2;0 36.0 0 37.0 0 60.0 4.000 0.0250 0 0 5.000 1 0 2 80 TCATGGCAGAAGGGAATGGG GCCAACATGTCACAATGTGA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38407798 38407798 A T 95 3 44 46 1 2 A/T 0.0316 2;2 31.0 1 38.7 1 60.0 6.000 0.0337 0.0105 0 3.000 1 1.0 3 89 TTTATTAGCCAAACCCAAGA AGCAGACAAACCTCACTGGC 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38391304 38391304 C CA 72 32 12 14 15 17 C/+1 0.4444 2;2 38.6 1 39.7 1 60.0 31.000 0.4697 0.0833 14 15.000 1 2.0 31 66 ATGGCAAAACCCCATCTCTA AAAAAAAAAAAAAATACAAA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38391304 38391304 C CA 72 32 12 14 15 17 C/+1 0.4444 2;2 35.7 1 36.8 1 55.6 31.000 0.4697 0.0833 14 15.000 1 2.0 31 66 ATGGCAAAACCCCATCTCTA AAAAAAAAAAAAAATACAAA 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38407728 38407728 A G 83 3 32 48 2 1 A/G 0.0361 2;2 32.7 1 42.0 0 60.0 6.000 0.0385 0 0 4.000 1 1.3 3 78 AATCTAATAAAATTGGTGTC GGGGCTCCCTGGGTGCCAGT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38391436 38391436 G C 69 3 28 38 0 3 G/C 0.0435 2;0 9.0 1 28.3 1 60.0 2.000 0.0323 0.0290 0 2.000 1 2.7 2 62 CTGCAGTGAGCTGAGATCAT CCACTGAACTTCAGCATGGG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38391484 38391486 GAA G 64 2 26 34 2 0 A/-2 0.0312 2;0 40.0 0 42.0 0 60.0 4.000 0.0328 0 10 12.000 1 0.5 2 61 GCGAGATCCTCTCTCAAAAG AAAAAAAAAAGCTTATCTGC 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38391484 38391485 GA G 64 2 26 34 0 2 A/-1 0.0312 2;0 75.0 1 36.4 1 60.0 4.000 0.0328 0.0156 11 12.000 1 1.0 2 61 GCGAGATCCTCTCTCAAAAG AAAAAAAAAAAGCTTATCTG 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38391484 38391484 G GA 63 10 22 23 4 6 G/+1 0.1587 2;2 38.7 1 44.5 1 64.4 20.000 0.2000 0.0159 12 13.000 1 2.6 10 50 GCGAGATCCTCTCTCAAAAG AAAAAAAAAAAAGCTTATCT 20:38386266-38409801 Insertion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38391484 38391484 G GAA 63 3 22 23 0 3 G/+2 0.0476 2;0 46.2 0 45.1 0 64.4 6.000 0.0600 0 12 14.000 1 5.0 3 50 GCGAGATCCTCTCTCAAAAG AAAAAAAAAAAAGCTTATCT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38391484 38391484 G GA 63 10 22 23 4 6 G/+1 0.1587 2;2 36.1 1 41.5 1 60.0 20.000 0.2000 0.0159 12 13.000 1 2.6 10 50 GCGAGATCCTCTCTCAAAAG AAAAAAAAAAAAGCTTATCT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38391484 38391484 G GAA 63 3 22 23 0 3 G/+2 0.0476 2;0 43.0 0 42.0 0 60.0 6.000 0.0600 0 12 14.000 1 5.0 3 50 GCGAGATCCTCTCTCAAAAG AAAAAAAAAAAAGCTTATCT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38391629 38391630 GA G 59 2 34 23 0 2 A/-1 0.0339 2;0 54.0 0 42.0 0 60.0 4.000 0.0345 0 3 4.000 1 0 2 58 AGGTGTTTCTCTGGGAAGAG AAACCACAGCACTTTGCCGA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38408029 38408029 C A 100 3 45 51 3 0 C/A 0.0300 2;0 36.0 0 42.0 0 60.0 6.000 0.0319 0 0 3.000 1 2.7 3 94 AAAGGAAGTGTTTTTTCTCT TTTGTACTGTTATTTGCAGG 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38408018 38408018 G GT 89 2 41 44 1 1 G/+1 0.0225 2;2 43.4 1 40.8 1 62.0 4.000 0.0244 0 6 7.000 1 0 2 82 GGCCCATTGGGAAAGGAAGT TTTTTTCTCTCTTTGTACTG 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38408018 38408018 G GT 89 2 41 44 1 1 G/+1 0.0225 2;2 42.0 1 39.5 1 60.0 4.000 0.0244 0 6 7.000 1 0 2 82 GGCCCATTGGGAAAGGAAGT TTTTTTCTCTCTTTGTACTG 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38391574 38391574 C A 58 2 36 20 2 0 C/A 0.0345 2;0 7.0 0 42.0 0 60.0 4.000 0.0357 0 0 1.000 1 1.0 2 56 GCATTTTACTCCTGAATGCC AGGATACTATGCATACATTT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38391591 38391592 AT A 63 2 35 26 1 1 T/-1 0.0317 2;2 21.0 1 41.0 1 60.0 4.000 0.0328 0.0159 2 3.000 1 1.0 2 61 GCCCAGGATACTATGCATAC TTCCCTCCCTGCTGGTAGGT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38408147 38408148 AT A 122 4 78 40 3 1 T/-1 0.0328 2;2 55.2 1 42.0 0 60.0 8.000 0.0339 0 3 4.000 1 0 4 118 TATTTGCATGTGGAGTTTTC TTTGTAAACTGAGCACTTCT 20:38386266-38409801 Deletion 0 0 @@ -103,16 +103,16 @@ NA24385_chr_20_38386265_38409801 testbed 20 38391734 38391734 A G 57 3 24 30 3 0 NA24385_chr_20_38386265_38409801 testbed 20 38407261 38407262 AT A 86 2 39 42 1 1 T/-1 0.0233 2;2 10.5 1 38.7 1 60.0 4.000 0.0270 0.0116 6 7.000 1 0 2 74 AGCTATGACGTTTCTTTCCT TTTTTTCTCAATGCCTAGCT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38390889 38390889 T A 71 2 28 41 0 2 T/A 0.0282 2;0 49.5 1 42.0 0 60.0 4.000 0.0308 0 0 3.000 1 1.5 2 65 ATTTAAAGCAGTCTTGTAAC TTGAAGACAATTTGCTCCTC 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38407183 38407183 A T 95 3 43 49 0 3 A/T 0.0316 2;0 9.0 0 42.0 0 60.0 6.000 0.0337 0 0 2.000 1 1.0 3 89 TGTGCTCACCTTTTTGGCAT ATCCTGGGGTATTGAGAACC 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38407172 38407172 C CT 95 2 38 53 0 2 C/+1 0.0211 2;0 28.7 1 43.1 0 61.6 4.000 0.0233 0 5 6.000 1 0.5 2 86 AAGAGTGATGGTGTGCTCAC TTTTTGGCATAATCCTGGGG 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38407172 38407172 C CT 95 2 38 53 0 2 C/+1 0.0211 2;0 28.0 1 42.0 0 60.0 4.000 0.0233 0 5 6.000 1 0.5 2 86 AAGAGTGATGGTGTGCTCAC TTTTTGGCATAATCCTGGGG 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38390928 38390928 G GCCTCTGTTTTGCAGAGCTCTAGCTCTAGAGCAAGAAAAAACCTACGGTTTCTCTTACAGGCTGCAAAGAGATGGTGTTCACCTCTGTGTGCTTCAAGATATGGTTTACATAGCTAATGTACAGTGCTCTTAGTCAGCATTAGTTCAAGATTAAATGTTTCAGAGCCTAAAGAGTAAGATGTCAGTGATTCCTGATGGATCTAAAATAGCAAGTAAATCGTGCAGTGGTTCAAATGCTGGTT 80 2 33 37 2 0 G/+241 0.0250 2;0 32.0 1 42.0 1 60.0 4.000 0.0286 0.0250 70 2.000 1 0 2 70 TCTGATGTTTCCATTTTAAG CCTCTGTTTTGCAGAGCTCT 20:38386266-38409801 Insertion 0 2-3-1 NA24385_chr_20_38386265_38409801 testbed 20 38407521 38407522 TC T 70 2 37 31 2 0 C/-1 0.0286 2;0 34.0 0 39.5 1 60.0 4.000 0.0299 0 5 6.000 1 1.5 2 67 AGGAAACCAACCTCCTCTTC CCCCCACCTCACAGAAGAGG 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38407521 38407521 T TC 71 3 38 29 2 1 T/+1 0.0423 2;2 39.3 1 40.0 1 62.0 6.000 0.0508 0 6 7.000 1 0.7 3 59 AGGAAACCAACCTCCTCTTC CCCCCCACCTCACAGAAGAG 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38407521 38407521 T TC 71 3 38 29 2 1 T/+1 0.0423 2;2 38.0 1 38.7 1 60.0 6.000 0.0508 0 6 7.000 1 0.7 3 59 AGGAAACCAACCTCCTCTTC CCCCCCACCTCACAGAAGAG 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38391089 38391089 A T 77 2 44 31 1 1 A/T 0.0260 2;2 17.0 1 37.0 1 60.0 4.000 0.0267 0.0130 2 2.000 2 2.5 2 75 AGTTCAAGATTAAATGTTTC GAGCCTAAAGAGTAAGATGT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38407626 38407626 T TCAAACAAGAGACGACAAAATCTTGGTTACTGAGCAACTGTGGACTCCCTGCTGGGATGGCATCCTGGGCCTTGCAAAGAGAAATCTAATAAAATTGGTGTCAGGGGCTCCCTGGGTGCCAGTTCCCCTGCTGCCTGACCCCACAATCCCAATTTATTAGCCAAACCCAAGAAAGCAGACAAACCTCACTGGCTCCAGACAGGAGACTTCCAAGTGGGAGCTAATGTGGGGGC 104 2 47 31 0 2 T/+232 0.0192 2;0 57.0 1 39.2 1 60.0 4.000 0.0263 0.0192 70 2.000 1 1.0 2 76 TCTAGTAAAAAATGACCTTG CAAACAAGAGACGACAAAAT 20:38386266-38409801 Insertion 0 2-0-0 NA24385_chr_20_38386265_38409801 testbed 20 38407575 38407575 G GCTTGTATAATTAATGTGGGATTTTTCCTCCTCTAGTAAAAAATGACCTTGTCAAACAAGAGACGACAAAATCTTGGTTACTGAGCAACTGTGGACTCCCTGCTGGGATGGCATCCTGGGCCTTGCAAAGAGAAATCTAATAAAATTGGTGTCAGGGGCTCCCTGGGTGCCAGTTCCCCTGCTGCCTGACCCCACAATCCCAATTTATTAGCCAAACCCAAGAAAGCAGACAAACCTCACTGGCTCCAGACAGGAGAC 91 2 37 35 0 2 G/+257 0.0220 2;0 38.0 1 40.2 1 60.0 4.000 0.0290 0.0220 70 2.000 1 0 2 69 AATGGCCTTGGCCCCAGTTT CTTGTATAATTAATGTGGGA 20:38386266-38409801 Insertion 0 2-0-0 -NA24385_chr_20_38386265_38409801 testbed 20 38407595 38407595 A AT 83 2 51 29 2 0 A/+1 0.0241 2;0 12.3 0 40.6 1 61.6 4.000 0.0270 0 5 6.000 1 0 2 74 GCTTGTATAATTAATGTGGG TTTTTCCTCCTCTAGTAAAA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38407595 38407595 A AT 83 2 51 29 2 0 A/+1 0.0241 2;0 12.0 0 39.5 1 60.0 4.000 0.0270 0 5 6.000 1 0 2 74 GCTTGTATAATTAATGTGGG TTTTTCCTCCTCTAGTAAAA 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38407611 38407611 T A 80 3 51 23 0 3 T/A 0.0375 2;0 53.0 0 40.3 1 60.0 6.000 0.0411 0 1 6.000 1 4.0 3 73 TGGGATTTTTCCTCCTCTAG AAAAAATGACCTTGTCAAAC 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38407611 38407611 T TA 80 2 51 23 0 2 T/+1 0.0250 2;0 38.2 0 43.4 0 62.0 4.000 0.0274 0 6 7.000 1 0 2 73 TGGGATTTTTCCTCCTCTAG AAAAAATGACCTTGTCAAAC 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38407611 38407611 T TA 80 2 51 23 0 2 T/+1 0.0250 2;0 37.0 0 42.0 0 60.0 4.000 0.0274 0 6 7.000 1 0 2 73 TGGGATTTTTCCTCCTCTAG AAAAAATGACCTTGTCAAAC 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38392348 38392348 T A 98 2 42 54 1 1 T/A 0.0204 2;2 65.0 1 42.0 0 60.0 4.000 0.0217 0 1 2.000 1 1.0 2 92 TAGAGTGAGTGGGGCCATGG GGACATTGTGGGAAGGGACA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38392569 38392569 T A 45 3 17 25 0 3 T/A 0.0667 2;0 57.0 0 42.0 0 60.0 6.000 0.0769 0 0 4.000 1 1.0 3 39 GTATCTCACAAATGCAAATT TAATGTATTGTTTTCCTTTT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38408951 38408951 A T 75 2 32 40 0 2 A/T 0.0267 2;0 71.0 0 42.0 0 60.0 4.000 0.0299 0 1 1.000 1 2.0 2 67 ATATATATATATAAAAGATG CAACAAAAATAAGTGGATAA 20:38386266-38409801 SNV 0 0 @@ -125,10 +125,10 @@ NA24385_chr_20_38386265_38409801 testbed 20 38408314 38408314 T C 115 3 37 73 0 NA24385_chr_20_38386265_38409801 testbed 20 38408313 38408314 CT C 115 2 37 73 1 1 T/-1 0.0174 2;2 32.0 1 42.0 0 60.0 4.000 0.0190 0 1 2.000 1 0 2 105 TTGGGAAAATTTCTTAACTT TCACCTATAAAATGAGATAA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38392008 38392008 A T 96 2 60 34 1 1 A/T 0.0208 2;2 32.0 1 42.0 0 60.0 4.000 0.0222 0 0 2.000 2 1.0 2 90 CCTTCCATGGGTGCAGCTAT TGCCAGCCTCAGGAAACCTA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38392045 38392046 AT A 82 3 47 32 3 0 T/-1 0.0366 2;0 43.0 1 42.0 0 60.0 6.000 0.0423 0 8 9.000 1 0.3 3 71 CCTATCTTTCTGAAAAATAC TTTTTTTTCTTTCAAAGGAA 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38408417 38408417 C CA 97 4 40 50 4 0 C/+1 0.0412 2;0 61.6 0 43.1 0 61.6 8.000 0.0449 0 5 6.000 1 1.0 4 89 ATAGCAAGTCACTATACCAG AAAAATCAGCTAGAAAAAGA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38408417 38408417 C CA 97 4 40 50 4 0 C/+1 0.0412 2;0 60.0 0 42.0 0 60.0 8.000 0.0449 0 5 6.000 1 1.0 4 89 ATAGCAAGTCACTATACCAG AAAAATCAGCTAGAAAAAGA 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38408420 38408420 A AAATCAGCTAGAAAAAGAAAGTCTATTTCAAATAGCAATGAGAACTCTAAAATGTCTAGGAATTGTCTTAACAAATAATATATAAAGCCTATGGGGGAAAGTGTCAAAACTCTAATAAAGGACATAAAAAACCATCTGATAATTTTAAAGATATTCCATGCTTATGAATGAGATGTCTTAATATTTAAAGTTACCAATTATCTTCAAAGTAAACTATGAACTTAATGCAGTGACAACCTAAATTTCAGACAGATTTAAAAATATCTAGAGACTAGAAAAATGCACACAAATGTAT 95 11 45 49 6 5 A/+294 0.1158 2;2 43.7 1 40.9 1 60.0 22.000 0.1089 0.1158 70 5.000 1 0 11 101 GCAAGTCACTATACCAGCAA AATCAGCTAGAAAAAGAAAG 20:38386266-38409801 Insertion 0 11-1-1 NA24385_chr_20_38386265_38409801 testbed 20 38408366 38408366 T A 96 4 27 65 4 0 T/A 0.0417 2;0 17.0 0 42.0 0 60.0 8.000 0.0449 0 0 1.000 1 1.0 4 89 TCATAAGGTGAGGATTCAAA ATGAGAAAAACAGAATAAAC 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38408371 38408371 G GA 89 3 32 52 0 3 G/+1 0.0337 2;0 55.1 1 43.1 0 61.6 6.000 0.0370 0 5 6.000 1 0 3 81 AGGTGAGGATTCAAATATGA AAAAACAGAATAAACCCACA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38408371 38408371 G GA 89 3 32 52 0 3 G/+1 0.0337 2;0 53.7 1 42.0 0 60.0 6.000 0.0370 0 5 6.000 1 0 3 81 AGGTGAGGATTCAAATATGA AAAAACAGAATAAACCCACA 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38391989 38391990 CT C 88 2 54 32 2 0 T/-1 0.0227 2;0 75.0 0 39.5 1 60.0 4.000 0.0247 0 1 2.000 1 1.0 2 81 TTCTCAAAGCTTTATTAGGC TCCATGGGTGCAGCTATATG 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38392081 38392081 T TCTGAGGGACACAAGAAAATCAAAGAAACCAGAGCAAAGTGCAGGATGCCATATTCCTAATAGCAGGAAGAAAACAGGGTCCTGTTGTACCTTAGTGACCCCGAATTCCTCAGGGTGGAGCAAATGCAGAAGGGCTCCAGGGCCATCTGCATCTG 86 2 47 35 1 1 T/+154 0.0233 2;2 46.5 1 41.5 1 60.0 4.000 0.0247 0.0233 70 3.000 1 0 2 81 AAGGAAAGGAGAAGCTAGTT CTGAGGGACACAAGAAAATC 20:38386266-38409801 Insertion 0 2-0-0 NA24385_chr_20_38386265_38409801 testbed 20 38392082 38392082 C A 93 4 52 37 4 0 C/A 0.0430 2;0 10.0 1 26.8 1 60.0 3.000 0.0345 0.0323 0 1.000 1 1.5 3 87 AGGAAAGGAGAAGCTAGTTT TGAGGGACACAAGAAAATCA 20:38386266-38409801 SNV 0 0 @@ -137,20 +137,20 @@ NA24385_chr_20_38386265_38409801 testbed 20 38408510 38408511 AT G 100 2 45 53 0 NA24385_chr_20_38386265_38409801 testbed 20 38392264 38392264 T C 105 2 38 65 1 1 T/C 0.0190 2;2 6.0 0 34.5 1 60.0 4.000 0.0196 0 1 2.000 2 1.0 2 102 ATTATTGCATCCTCTCTGTC CTTCCGTCCTGTATATACCA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38392275 38392277 GTA G 105 3 36 66 3 0 T/-2 0.0286 2;0 23.0 0 42.0 0 60.0 6.000 0.0300 0 4 3.000 2 0 3 100 CTCTCTGTCTCTTCCGTCCT TATACCAGTAATTAAACTGA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38408675 38408676 TA T 81 3 30 48 0 3 A/-1 0.0370 2;0 64.0 0 42.0 0 60.0 6.000 0.0380 0 4 5.000 1 0.7 3 79 ACCTAAATTTCAGACAGATT AAAATATCTAGAGACTAGAA 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38408694 38408694 G GA 79 3 31 44 3 0 G/+1 0.0380 2;0 18.8 1 38.0 1 61.6 6.000 0.0400 0 5 6.000 1 0.3 3 75 TTAAAAATATCTAGAGACTA AAAAATGCACACAAATGTAT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38408694 38408694 G GA 79 3 31 44 3 0 G/+1 0.0380 2;0 18.3 1 37.0 1 60.0 6.000 0.0400 0 5 6.000 1 0.3 3 75 TTAAAAATATCTAGAGACTA AAAAATGCACACAAATGTAT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38392216 38392217 TC T 94 2 41 50 0 2 C/-1 0.0213 2;0 10.0 0 42.0 0 60.0 4.000 0.0238 0 1 2.000 1 0 2 84 TGGAGCAAATGCAGAAGGGC CAGGGCCATCTGCATCTGTG 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38392209 38392210 GA G 90 2 40 47 2 0 A/-1 0.0222 2;0 34.0 0 42.0 0 60.0 4.000 0.0247 0 1 2.000 1 0.5 2 81 CTCAGGGTGGAGCAAATGCA AGGGCTCCAGGGCCATCTGC 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38393354 38393354 C CT 98 2 48 46 1 1 C/+1 0.0204 2;2 36.4 1 41.1 1 62.4 4.000 0.0217 0 7 8.000 1 1.6 2 92 AGTTCTTTTTTATTTTTTTT TTTTTTTCCAGAGATAAAGT 20:38386266-38409801 Insertion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38393345 38393345 A AT 97 4 44 43 3 1 A/+1 0.0412 2;2 37.2 1 41.3 1 62.8 8.000 0.0494 0 8 9.000 1 0 4 81 TATTTAGTCAGTTCTTTTTT TTTTTTTTCTTTTTTTCCAG 20:38386266-38409801 Insertion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38393546 38393546 A ATGTTGGCCAGGTCAGGAGTTCGAAACCAGCCTGGCCAACATGGTGAAACCC 66 2 25 35 1 1 A/+51 0.0303 2;2 28.8 1 43.2 1 52.8 4.000 0.0351 0.0303 11 3.000 1 2.1 2 57 AGTAGAGACAGGGTTTCACC TGTTGGCCAGGCTGGTTTCG 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38393354 38393354 C CT 98 2 48 46 1 1 C/+1 0.0204 2;2 35.0 1 39.5 1 60.0 4.000 0.0217 0 7 8.000 1 1.6 2 92 AGTTCTTTTTTATTTTTTTT TTTTTTTCCAGAGATAAAGT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38393345 38393345 A AT 97 4 44 43 3 1 A/+1 0.0412 2;2 35.5 1 39.5 1 60.0 8.000 0.0494 0 8 9.000 1 0 4 81 TATTTAGTCAGTTCTTTTTT TTTTTTTTCTTTTTTTCCAG 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38393546 38393546 A ATGTTGGCCAGGTCAGGAGTTCGAAACCAGCCTGGCCAACATGGTGAAACCC 66 2 25 35 1 1 A/+51 0.0303 2;2 27.0 1 40.5 1 49.5 4.000 0.0351 0.0303 11 3.000 1 2.1 2 57 AGTAGAGACAGGGTTTCACC TGTTGGCCAGGCTGGTTTCG 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38393714 38393714 T C 89 2 45 42 2 0 T/C 0.0225 2;0 53.0 0 42.0 0 60.0 4.000 0.0238 0 0 4.000 1 1.0 2 84 TGTGATATGATTTGGCTGTG CCCCACCCAAATCTCAACTT 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38393796 38393796 C CATGGGGGCTGGTCTTTCCCATGGTATTCTCATGATAGTGAATAATTCTCACGAGATCTAATGGGTTTATCAGGAGTTTCTGCTTTTGCTTCTTCCTCATTTTCTCCTGCTATTACCATGTAAGAAGTGCCTTTCACCTCCTACATG 95 3 18 10 0 3 C/+146 0.0316 2;0 58.1 1 46.2 1 58.1 6.000 0.1034 0.0211 70 2.000 3 0 3 29 CCAGGAGGAGGTAATTGAAT ATGGGGGCTGGTCTTTCCCA 20:38386266-38409801 Insertion 0 3-4-2 +NA24385_chr_20_38386265_38409801 testbed 20 38393796 38393796 C CATGGGGGCTGGTCTTTCCCATGGTATTCTCATGATAGTGAATAATTCTCACGAGATCTAATGGGTTTATCAGGAGTTTCTGCTTTTGCTTCTTCCTCATTTTCTCCTGCTATTACCATGTAAGAAGTGCCTTTCACCTCCTACATG 95 3 18 10 0 3 C/+146 0.0316 2;0 46.2 1 36.8 1 46.2 6.000 0.1034 0.0211 70 2.000 3 0 3 29 CCAGGAGGAGGTAATTGAAT ATGGGGGCTGGTCTTTCCCA 20:38386266-38409801 Insertion 0 3-4-2 NA24385_chr_20_38386265_38409801 testbed 20 38393771 38393771 G A 90 2 48 40 2 0 G/A 0.0222 2;0 7.0 0 39.5 1 60.0 4.000 0.0227 0 0 3.000 1 3.5 2 88 AATTCCCACCTGTTGTGGGA GGACCCAGGAGGAGGTAATT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38409293 38409293 A T 120 7 54 59 5 2 A/T 0.0583 2;2 14.4 1 41.3 1 60.0 14.000 0.0614 0 0 1.000 1 2.1 7 114 TATTTGCAAATTTTAAAATT GCAAAGGACGAATATCTATA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38392897 38392897 T C 66 3 32 31 0 3 T/C 0.0455 2;0 46.3 1 35.2 1 44.0 2.000 0.0308 0.0152 1 2.000 1 0.7 2 65 GGCGTGGTGGCGTGTACCTG AATCCTAGCTACTCAGGATT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38409280 38409280 A T 123 9 57 57 7 2 A/T 0.0732 2;2 8.3 1 41.3 1 60.0 18.000 0.0750 0.0081 3 3.000 1 3.1 9 120 ATTACTTGCAAGTTATTTGC AATTTTAAAATTAGCAAAGG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38409233 38409233 T A 101 2 53 46 2 0 T/A 0.0198 2;0 6.0 0 42.0 0 60.0 4.000 0.0202 0 2 2.000 1 1.0 2 99 ATAAATACCATAGACATGGT AATAAACAGTTGACAGATTG 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38393033 38393033 C CA 71 6 30 24 2 4 C/+1 0.0845 2;2 40.3 1 43.6 1 64.1 12.000 0.1111 0 13 14.000 1 2.2 6 54 AACAGAGGGAGACTTCATCT AAAAAAAAAAAAATTGAAAA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38393033 38393033 C CA 71 6 30 24 2 4 C/+1 0.0845 2;2 37.3 1 40.3 1 59.3 12.000 0.1111 0 13 14.000 1 2.2 6 54 AACAGAGGGAGACTTCATCT AAAAAAAAAAAAATTGAAAA 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38393033 38393034 CA C 74 5 34 35 2 3 A/-1 0.0676 2;2 41.0 1 42.0 0 60.0 10.000 0.0685 0 12 13.000 1 1.2 5 73 AACAGAGGGAGACTTCATCT AAAAAAAAAAAATTGAAAAT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38409409 38409409 T A 105 3 48 54 0 3 T/A 0.0286 2;0 7.7 1 35.3 1 60.0 2.000 0.0208 0.0095 1 3.000 1 1.0 2 96 TAGTCCTAGTGACCAATAAA AAATAAAAAGATACTGAAAC 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38393028 38393028 C T 72 2 35 34 1 1 C/T 0.0278 2;2 8.0 0 34.5 1 58.0 4.000 0.0317 0 1 1.000 1 1.5 2 63 TGGGCAACAGAGGGAGACTT ATCTCAAAAAAAAAAAAATT 20:38386266-38409801 SNV 0 0 @@ -163,9 +163,9 @@ NA24385_chr_20_38386265_38409801 testbed 20 38393140 38393140 T TTTGTATTGTATTGTT NA24385_chr_20_38386265_38409801 testbed 20 38409708 38409708 T A 67 3 44 20 3 0 T/A 0.0448 2;0 7.0 0 42.0 0 32.7 6.000 0.0484 0 0 2.000 1 1.7 3 62 TTTTAGGGTACATGTGCACA TGTGCAGGTTAGTTACTTAT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38393326 38393327 AT A 109 2 54 53 1 1 T/-1 0.0183 2;2 45.5 1 42.0 0 60.0 4.000 0.0190 0 2 3.000 1 0 2 105 TTTGTCTATTTCTTCTTGTT TTAGTCAGTTCTTTTTTATT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38409630 38409631 CT C 63 2 35 26 1 1 T/-1 0.0317 2;2 14.5 1 42.0 0 60.0 4.000 0.0333 0 1 2.000 1 0 2 60 AATTTTATACTAAAATTTTC TCTATAGAAGATGATCATAA 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38409658 38409658 C CT 60 2 35 19 2 0 C/+1 0.0333 2;0 21.5 1 44.0 1 47.1 4.000 0.0408 0.0167 8 9.000 1 2.1 2 49 GAAGATGATCATAATATTTT TTTTTTTTCTTTTATTATTA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38409658 38409658 C CT 60 2 35 19 2 0 C/+1 0.0333 2;0 20.5 1 42.0 1 45.0 4.000 0.0408 0.0167 8 9.000 1 2.1 2 49 GAAGATGATCATAATATTTT TTTTTTTTCTTTTATTATTA 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38394435 38394435 T C 82 2 40 40 2 0 T/C 0.0244 2;0 56.0 1 42.0 0 60.0 4.000 0.0260 0 0 1.000 1 2.5 2 77 AGGTATCTTAAACAGAGTAT GTCAGTTCTTCCCTCCAGTT 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38394521 38394521 A AT 93 3 37 51 0 3 A/+1 0.0323 2;0 40.0 0 43.1 0 61.6 6.000 0.0370 0 5 6.000 1 0 3 81 ATTATTCAATACATATTACT TTTTTCTTCTTAACAAATTG 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38394521 38394521 A AT 93 3 37 51 0 3 A/+1 0.0323 2;0 39.0 0 42.0 0 60.0 6.000 0.0370 0 5 6.000 1 0 3 81 ATTATTCAATACATATTACT TTTTTCTTCTTAACAAATTG 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38394631 38394631 A T 81 2 45 34 1 1 A/T 0.0247 2;2 16.5 1 39.5 1 60.0 4.000 0.0256 0 0 3.000 1 1.0 2 78 ATGCTTTTCTTTTCTAAGGT AATCCAAAATTCTGACCTAT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38394857 38394857 T A 104 2 59 43 2 0 T/A 0.0192 2;0 34.0 0 42.0 0 60.0 4.000 0.0211 0 0 1.000 1 2.5 2 95 CACTCACAATGTTGTACAAC ATCACCTCTATTCAGTTCAA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38394814 38394814 G A 111 2 66 42 2 0 G/A 0.0180 2;0 9.0 0 42.0 0 60.0 4.000 0.0200 0 0 2.000 1 1.5 2 100 AAAATTAACCATTTTAAAAT AACTGTTCAATGGCATTTAG 20:38386266-38409801 SNV 0 0 @@ -175,7 +175,7 @@ NA24385_chr_20_38386265_38409801 testbed 20 38393911 38393911 C T 96 2 62 32 0 2 NA24385_chr_20_38386265_38409801 testbed 20 38394103 38394103 A G 92 2 33 56 1 1 A/G 0.0217 2;2 26.0 1 42.0 0 60.0 4.000 0.0235 0 0 1.000 1 1.5 2 85 GAATTTACATCTTTATCATT TAAAACAATTTTTTTCTATC 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38393991 38393992 CT C 95 2 44 48 2 0 T/-1 0.0211 2;0 33.0 0 42.0 0 60.0 4.000 0.0235 0 4 5.000 1 0 2 85 CCATAAGTCCAATTAAACCT TTTTCTTCCCAGTCTCAGGT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38394017 38394018 CT C 95 2 46 47 2 0 T/-1 0.0211 2;0 43.0 0 42.0 0 60.0 4.000 0.0233 0 2 3.000 1 0 2 86 CTTCCCAGTCTCAGGTACGT TTGCCAGCTGCGTAAAAACA 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38394214 38394214 C CT 70 2 34 32 2 0 C/+1 0.0286 2;0 44.1 0 43.1 0 61.6 4.000 0.0303 0 5 6.000 1 0 2 66 GACTTTATTGTTTTAGAACA TTTTTATACTTACAGAAAAT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38394214 38394214 C CT 70 2 34 32 2 0 C/+1 0.0286 2;0 43.0 0 42.0 0 60.0 4.000 0.0303 0 5 6.000 1 0 2 66 GACTTTATTGTTTTAGAACA TTTTTATACTTACAGAAAAT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38394315 38394316 TA T 71 2 38 31 0 2 A/-1 0.0282 2;0 71.0 0 34.5 1 60.0 4.000 0.0303 0 1 4.000 1 0.5 2 66 AAGAAGGTATGTTGAAGTTT ACCTCCTCAAAATATGACTT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38395409 38395410 AT A 106 2 55 49 2 0 T/-1 0.0189 2;0 29.0 0 42.0 0 60.0 4.000 0.0196 0 2 3.000 1 0 2 102 TGGTTGTTCTCTTACTTTTT TTGGCACTTTTAATATTTCA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38395432 38395432 T TGTATTTTCTTCTTGCTTGCATAGTTTCTGATAAGAAATCTGCTGTAATTTTCATCCTTATTCCTTGAGGTAACATGTTTCTTTTCCTCTGGAAGTGCTCAAGATTTTCTCCTTGTGTTTGGTTTTCTGCAGTTTG 122 3 60 50 2 1 T/+135 0.0246 2;2 44.7 1 38.2 1 60.0 6.000 0.0280 0.0246 70 2.000 1 0.7 3 107 TGGCACTTTTAATATTTCAT GTATTTTCTTCTTGCTTGCA 20:38386266-38409801 Insertion 0 3-0-0 @@ -183,12 +183,12 @@ NA24385_chr_20_38386265_38409801 testbed 20 38395563 38395563 G A 125 3 67 53 0 NA24385_chr_20_38386265_38409801 testbed 20 38395563 38395563 G C 125 2 67 53 0 2 G/C 0.0160 2;0 8.0 0 37.0 0 60.0 4.000 0.0167 0 0 3.000 1 3.0 2 120 CTTGTGTTTGGTTTTCTGCA TTTGAATTTGATATATTTGA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38395735 38395735 T A 134 2 71 60 1 1 T/A 0.0149 2;2 23.5 1 42.0 0 60.0 4.000 0.0159 0 1 1.000 1 1.0 2 126 TCTGGCACACCAATAACACA ATGTCACACCTTTTGGAATG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38395676 38399464 A 126 2 70 56 1 1 A/+3789 0.0159 2;2 19.5 1 38.8 1 60.0 4.000 0.0164 0.0159 0 0 0 1.0 2 122 ATTTGGGGAATTTCTTAGCC TTCTTCCAGTTATATCTAAG 20:38386266-38409801 DUP 0 2-0-0 -NA24385_chr_20_38386265_38409801 testbed 20 38395800 38395800 C CT 123 7 52 58 3 4 C/+1 0.0569 2;2 38.5 1 41.9 1 62.0 14.000 0.0648 0 6 7.000 1 0.4 7 108 ACTTTTATTTATTTTTCATT TTTTTTCGTTTCATTTTGAG 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38395800 38395800 C CT 123 7 52 58 3 4 C/+1 0.0569 2;2 37.3 1 40.6 1 60.0 14.000 0.0648 0 6 7.000 1 0.4 7 108 ACTTTTATTTATTTTTCATT TTTTTTCGTTTCATTTTGAG 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38394909 38394909 A G 98 2 47 49 0 2 A/G 0.0204 2;0 58.0 0 39.5 1 60.0 4.000 0.0213 0 0 2.000 1 2.0 2 94 TAAAAGAAAATGCTGTGCTT TTCAGCTGTTGCATCTCATT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38395390 38395390 G T 107 3 53 51 1 2 G/T 0.0280 2;2 19.3 1 31.7 1 60.0 2.000 0.0202 0 0 2.000 1 1.3 2 99 TCACTTGATATAGAATTCTT GTTGTTCTCTTACTTTTTAT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38395382 38395382 G T 109 3 46 59 2 1 G/T 0.0275 2;2 14.0 1 28.3 1 60.0 2.000 0.0204 0.0092 1 2.000 1 2.3 2 98 AATAAATTTCACTTGATATA AATTCTTGGTTGTTCTCTTA 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38395271 38395271 A AT 110 4 49 53 0 4 A/+1 0.0364 2;0 31.7 1 42.4 1 62.4 8.000 0.0392 0 7 8.000 1 0 4 102 TTTGTTTGAGTATGTTTTTA TTTTTTTGATATATACCTAT 20:38386266-38409801 Insertion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38396506 38396506 G GT 106 4 45 54 3 1 G/+1 0.0377 2;2 25.6 1 42.1 1 62.0 8.000 0.0400 0 6 7.000 1 0.8 4 100 CATCCTAAGTGTATCTCAGT TTTTTTCCCATATTAGGTAA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38395271 38395271 A AT 110 4 49 53 0 4 A/+1 0.0364 2;0 30.5 1 40.8 1 60.0 8.000 0.0392 0 7 8.000 1 0 4 102 TTTGTTTGAGTATGTTTTTA TTTTTTTGATATATACCTAT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38396506 38396506 G GT 106 4 45 54 3 1 G/+1 0.0377 2;2 24.8 1 40.8 1 60.0 8.000 0.0400 0 6 7.000 1 0.8 4 100 CATCCTAAGTGTATCTCAGT TTTTTTCCCATATTAGGTAA 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38396547 38396547 G GAGAATGGAGACATTTCCCTTACTGCACAGTGGATATGGCTTTAGTAAAGTCTTTTCTCTTGCCAAGTAGACTTGTCTTATGGAGAATGCTCTGGGCATATTTCAAAGTGGTTACTTTATCCTTCCTTCTGCCATATGGC 111 2 54 41 1 1 G/+139 0.0180 2;2 40.0 1 34.7 1 60.0 4.000 0.0220 0.0180 70 2.000 1 0 2 91 GACATGAAGGGTAGAGGGTG AGAATGGAGACATTTCCCTT 20:38386266-38409801 Insertion 0 2-0-0 NA24385_chr_20_38386265_38409801 testbed 20 38396771 38396771 A G 94 4 38 52 2 2 A/G 0.0426 2;2 45.5 1 42.0 0 60.0 8.000 0.0449 0 0 2.000 1 1.2 4 89 AAAAACCCAAGGAACAGTAG GGCTTCCCTAAGAGTGTGGT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38396717 38396718 GA G 100 2 46 52 0 2 A/-1 0.0200 2;0 36.5 1 42.0 0 60.0 4.000 0.0217 0 2 3.000 1 0.5 2 92 CTCTTGCCTCTTTACTGTGA AATGGGTAGGTTTTCTGTTG 20:38386266-38409801 Deletion 0 0 @@ -198,27 +198,27 @@ NA24385_chr_20_38386265_38409801 testbed 20 38395979 38395979 T G 120 2 66 52 2 NA24385_chr_20_38386265_38409801 testbed 20 38395936 38395936 T A 110 2 60 48 2 0 T/A 0.0182 2;0 51.0 0 37.0 0 60.0 4.000 0.0189 0 1 3.000 1 1.0 2 106 CTTTTGTTTCCTGTTTGATC TTCTTAGAATTTCCAACTCT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38396103 38396104 AT A 125 2 59 61 1 1 T/-1 0.0160 2;2 15.5 1 39.8 1 60.0 4.000 0.0167 0.0080 9 10.000 1 1.5 2 120 TTCTGATGCTTGTCTCTTCA TTTTTTTTTGCCTTTTAGCA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38396103 38396105 ATT A 125 2 59 61 0 2 T/-2 0.0160 2;0 21.0 0 39.5 1 60.0 4.000 0.0167 0 8 10.000 1 0.5 2 120 TTCTGATGCTTGTCTCTTCA TTTTTTTTGCCTTTTAGCAT 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38396103 38396103 A AT 123 5 47 55 3 2 A/+1 0.0407 2;2 34.6 1 41.3 1 63.6 10.000 0.0543 0 10 11.000 1 1.3 5 92 TTCTGATGCTTGTCTCTTCA TTTTTTTTTTGCCTTTTAGC 20:38386266-38409801 Insertion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38396103 38396103 A ATT 123 2 47 55 2 0 A/+2 0.0163 2;0 41.3 0 40.5 1 63.6 4.000 0.0217 0 10 12.000 1 0.5 2 92 TTCTGATGCTTGTCTCTTCA TTTTTTTTTTGCCTTTTAGC 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38396103 38396103 A AT 123 5 47 55 3 2 A/+1 0.0407 2;2 32.6 1 39.0 1 60.0 10.000 0.0543 0 10 11.000 1 1.3 5 92 TTCTGATGCTTGTCTCTTCA TTTTTTTTTTGCCTTTTAGC 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38396103 38396103 A ATT 123 2 47 55 2 0 A/+2 0.0163 2;0 39.0 0 38.2 1 60.0 4.000 0.0217 0 10 12.000 1 0.5 2 92 TTCTGATGCTTGTCTCTTCA TTTTTTTTTTGCCTTTTAGC 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38396158 38396158 A G 139 2 68 69 1 1 A/G 0.0144 2;2 16.5 1 37.0 1 60.0 4.000 0.0156 0 0 1.000 1 1.5 2 128 TTTGTTGAAAATTAAACATG CTTATTGAGTAATAGGAACT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38396367 38396367 A T 113 2 60 51 0 2 A/T 0.0177 2;0 34.0 0 39.5 1 60.0 4.000 0.0198 0 0 2.000 1 1.0 2 101 CTGTGCCTTGCAGTTCTTTT ACTGTAATTCACTGTTATTA 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38396293 38396293 A AT 101 5 43 46 3 2 A/+1 0.0495 2;2 31.8 1 44.2 0 63.2 10.000 0.0633 0 9 10.000 1 0.2 5 79 AATTTCCTCTGGTGTCCTTG TTTTTTTTTCCTTTTTTGTG 20:38386266-38409801 Insertion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38396304 38396304 C CT 111 3 50 56 3 0 C/+1 0.0270 2;0 25.8 1 43.4 1 62.0 6.000 0.0291 0.0090 6 7.000 1 1.7 3 103 GTGTCCTTGATTTTTTTTTC TTTTTTGTGTTTGAGTTTTC 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38396293 38396293 A AT 101 5 43 46 3 2 A/+1 0.0495 2;2 30.2 1 42.0 0 60.0 10.000 0.0633 0 9 10.000 1 0.2 5 79 AATTTCCTCTGGTGTCCTTG TTTTTTTTTCCTTTTTTGTG 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38396304 38396304 C CT 111 3 50 56 3 0 C/+1 0.0270 2;0 25.0 1 42.0 1 60.0 6.000 0.0291 0.0090 6 7.000 1 1.7 3 103 GTGTCCTTGATTTTTTTTTC TTTTTTGTGTTTGAGTTTTC 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38396335 38396335 C A 129 4 61 63 4 0 C/A 0.0310 2;0 8.0 0 40.8 1 60.0 8.000 0.0323 0 4 5.000 1 1.0 4 124 TTGAGTTTTCCTAAAAACTC TTTTTAATAGTCTGTGCCTT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38396327 38396327 A T 114 2 57 55 1 1 A/T 0.0175 2;2 26.5 1 42.0 0 60.0 4.000 0.0192 0 0 5.000 1 2.0 2 104 TTTTGTGTTTGAGTTTTCCT AAAACTCCTTTTTAATAGTC 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38396326 38396326 T TA 117 6 56 53 1 5 T/+1 0.0513 2;2 25.0 1 42.3 1 61.6 12.000 0.0526 0 5 6.000 1 0.2 6 114 TTTTTGTGTTTGAGTTTTCC AAAAACTCCTTTTTAATAGT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38396326 38396326 T TA 117 6 56 53 1 5 T/+1 0.0513 2;2 24.3 1 41.2 1 60.0 12.000 0.0526 0 5 6.000 1 0.2 6 114 TTTTTGTGTTTGAGTTTTCC AAAAACTCCTTTTTAATAGT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38396351 38396351 G T 117 4 63 50 1 3 G/T 0.0342 2;2 42.2 1 34.2 1 60.0 3.000 0.0280 0 0 2.000 1 1.2 3 107 ACTCCTTTTTAATAGTCTGT CCTTGCAGTTCTTTTAACTG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38396341 38396341 A T 135 3 68 62 2 1 A/T 0.0222 2;2 22.0 1 31.7 1 60.0 2.000 0.0161 0 0 2.000 1 4.0 2 124 TTTCCTAAAAACTCCTTTTT ATAGTCTGTGCCTTGCAGTT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38397479 38397479 A T 98 3 44 51 1 2 A/T 0.0306 2;2 51.3 1 40.3 1 60.0 6.000 0.0333 0 0 1.000 1 2.7 3 90 GTTTACAATATATATTCTTA CTTACTACAGTTTACCTTCA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38397643 38397643 C A 155 7 87 61 5 2 C/A 0.0452 2;2 9.9 1 39.5 1 60.0 14.000 0.0496 0.0129 0 1.000 1 2.4 7 141 ACAGAGTTTCACTCTGTCTC AGGGCTGAAGTACAGTGGCA 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38397615 38397615 C CT 142 2 66 69 0 2 C/+1 0.0141 2;0 12.2 0 42.8 0 61.2 4.000 0.0157 0 4 5.000 1 0.5 2 127 TTTTATTCTATTTTATTTTA TTTTGAGACAGAGTTTCACT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38397615 38397615 C CT 142 2 66 69 0 2 C/+1 0.0141 2;0 12.0 0 42.0 0 60.0 4.000 0.0157 0 4 5.000 1 0.5 2 127 TTTTATTCTATTTTATTTTA TTTTGAGACAGAGTTTCACT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38397605 38397605 T TTTTATTTTACTTTTGAGACAGAGTTTCACTCTGTCTCCAGGGCTGAAGTACAGTGGCATGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGTACCCACCACTACACCCAGCTATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTAAGGCTGGTCTTGAACTCCTGACCTTGTGATTCACCCGCCTCGGCCTACCAAAGTGCTGGGAATACAGGAGTGGGCCACTGATTCTTTTCTGGGCTTTTTTGTTACTGTGGTAATACCTTTTAGTTTTATATATGTTATAAAGTATGCATCACATATTTATTATTTTGTTTAAACAGCCAATTGCATCTTGAAGGATTTAAACAATAAGAACAAAATCTTACATATTTGTCCACAGACTTAATATTTCTTGTGCTA 141 2 68 73 0 2 T/+461 0.0142 2;0 41.0 1 41.3 1 60.0 4.000 0.0145 0.0142 70 4.000 1 0 2 138 TTTTATTTTATTTTATTCTA TTTATTTTACTTTTGAGACA 20:38386266-38409801 Insertion 0 2-11-2 NA24385_chr_20_38386265_38409801 testbed 20 38397630 38397632 TTC GAA 169 21 73 75 18 3 TTC/GAA 0.1243 2;2 9.7 1 39.3 1 60.0 20.000 0.1235 0.0769 0 3.000 1 2.2 20 162 TTTTACTTTTGAGACAGAGT ACTCTGTCTCCAGGGCTGAA 20:38386266-38409801 Complex 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38397767 38397767 A AT 107 2 54 47 1 1 A/+1 0.0187 2;2 32.2 1 43.1 1 62.4 4.000 0.0230 0.0093 7 8.000 1 0 2 87 ACCCACCACTACACCCAGCT TTTTTTTGTATTTTTAGTAG 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38397767 38397767 A AT 107 2 54 47 1 1 A/+1 0.0187 2;2 31.0 1 41.4 1 60.0 4.000 0.0230 0.0093 7 8.000 1 0 2 87 ACCCACCACTACACCCAGCT TTTTTTTGTATTTTTAGTAG 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38397777 38397778 AT A 100 3 49 48 3 0 T/-1 0.0300 2;0 67.0 0 42.0 0 60.0 6.000 0.0303 0 4 5.000 1 0 3 99 ACACCCAGCTATTTTTTTGT TTTTAGTAGAGACGGGGTTT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38397912 38397913 GT G 128 2 59 67 0 2 T/-1 0.0156 2;0 33.0 0 42.0 0 60.0 4.000 0.0160 0 1 2.000 1 4.0 2 125 ATTCTTTTCTGGGCTTTTTT TACTGTGGTAATACCTTTTA 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38396999 38396999 G GA 86 2 46 37 1 1 G/+1 0.0233 2;2 35.9 1 43.1 0 61.6 4.000 0.0244 0 5 6.000 1 1.5 2 82 TCAATTCTCTGATGGACTCA AAAAAGTCATGATTTTTGGT 20:38386266-38409801 Insertion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38397028 38397028 G GT 81 6 35 36 5 1 G/+1 0.0741 2;2 46.6 1 41.9 1 63.6 12.000 0.0822 0 10 11.000 1 2.1 6 73 ATGATTTTTGGTTTGTTCAG TTTTTTTTTTCTTATTGTAC 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38396999 38396999 G GA 86 2 46 37 1 1 G/+1 0.0233 2;2 35.0 1 42.0 0 60.0 4.000 0.0244 0 5 6.000 1 1.5 2 82 TCAATTCTCTGATGGACTCA AAAAAGTCATGATTTTTGGT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38397028 38397028 G GT 81 6 35 36 5 1 G/+1 0.0741 2;2 44.0 1 39.5 1 60.0 12.000 0.0822 0 10 11.000 1 2.1 6 73 ATGATTTTTGGTTTGTTCAG TTTTTTTTTTCTTATTGTAC 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38396959 38396959 T A 100 2 50 47 2 0 T/A 0.0200 2;0 21.0 0 39.5 1 60.0 4.000 0.0206 0 0 2.000 1 1.5 2 97 TATCTTTCTAGATTTCTTGG GGTACTTTGCCCTGTGACCT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38397142 38397143 AT A 115 2 61 52 2 0 T/-1 0.0174 2;0 23.0 0 42.0 0 60.0 4.000 0.0179 0 2 3.000 1 0 2 112 ATAATATATCCTTTCCCATC TTAACTTTTAGTCTATTTGC 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38397180 38397181 AT A 96 2 59 35 0 2 T/-1 0.0208 2;0 59.0 0 42.0 0 60.0 4.000 0.0215 0 4 5.000 1 0 2 93 TTGCATCTTTATATTCCAAT TTTTATAGGTAACATTTAGT 20:38386266-38409801 Deletion 0 0 @@ -229,17 +229,17 @@ NA24385_chr_20_38386265_38409801 testbed 20 38397432 38397433 AT A 114 4 54 56 2 NA24385_chr_20_38386265_38409801 testbed 20 38397424 38397425 AT A 114 2 56 56 0 2 T/-1 0.0175 2;0 61.0 0 42.0 0 60.0 4.000 0.0183 0 1 2.000 1 0 2 109 ATATTCTTTAGCTCTTGTCT TATTACATTTTACTGGTTGC 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38397336 38397352 ATTTCTTCTCCTGTTTT A 133 2 63 68 2 0 T/-16 0.0150 2;0 56.0 0 42.0 0 60.0 4.000 0.0157 0 8 7.000 1 1.0 2 127 CTTTGGTTTCTGTCTGACTA TTTCTTCTACCCTCTGTTTA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38397348 38397349 GT G 130 2 62 64 2 0 T/-1 0.0154 2;0 26.0 0 42.0 0 60.0 4.000 0.0161 0 6 7.000 1 0 2 124 TCTGACTAATTTCTTCTCCT TTTTTTCTTCTACCCTCTGT 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38397348 38397348 G GT 131 6 60 59 1 5 G/+1 0.0458 2;2 54.4 1 42.8 1 62.4 12.000 0.0504 0 7 8.000 1 1.4 6 119 TCTGACTAATTTCTTCTCCT TTTTTTTCTTCTACCCTCTG 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38397348 38397348 G GT 131 6 60 59 1 5 G/+1 0.0458 2;2 52.3 1 41.2 1 60.0 12.000 0.0504 0 7 8.000 1 1.4 6 119 TCTGACTAATTTCTTCTCCT TTTTTTTCTTCTACCCTCTG 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38398542 38398542 A T 76 2 34 40 2 0 A/T 0.0263 2;0 8.0 1 42.0 0 60.0 4.000 0.0278 0 0 2.000 1 1.5 2 72 GATAATAAATTTGTTTTTTT AGCCACCAAGTTTGTGGTAA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38398471 38398472 AT A 104 3 41 60 0 3 T/-1 0.0288 2;0 46.7 1 42.0 0 60.0 6.000 0.0309 0 4 5.000 1 1.3 3 97 ACAACTTTGCCAATATCTTG TTTTAGCCTAGTGCTCTCTG 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38398705 38398705 A T 109 2 58 49 2 0 A/T 0.0183 2;0 45.0 0 42.0 0 60.0 4.000 0.0200 0 0 2.000 2 1.5 2 100 TTTGTGTGTAAATCATGAAT TGCATGCAGTACATAAATAG 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38398774 38398774 G GA 121 7 59 47 4 3 G/+1 0.0579 2;2 37.3 1 40.4 1 62.0 14.000 0.0729 0 6 7.000 1 1.2 7 96 TTTATGACTTAGTACTTAGG AAAAAAGTCTAAAAAGACTC 20:38386266-38409801 Insertion 0 2-0-0 +NA24385_chr_20_38386265_38409801 testbed 20 38398774 38398774 G GA 121 7 59 47 4 3 G/+1 0.0579 2;2 36.1 1 39.1 1 60.0 14.000 0.0729 0 6 7.000 1 1.2 7 96 TTTATGACTTAGTACTTAGG AAAAAAGTCTAAAAAGACTC 20:38386266-38409801 Insertion 0 2-0-0 NA24385_chr_20_38386265_38409801 testbed 20 38398774 38398774 G GAAAAAAGTCTAAAAAGACTCCTTAGGGGATGATAATAAGAAACACTTGAGAAACACTGGTTCAGATGCATATTTTCATCGTCTTATTTTCCTTCAGCCTGAAGTATTTCCTTTATTGTGTCTTGTGGTGTAACTTTACCATCTGTAGGTGGTAAATTATTTCAGTGTTTCTATGTCTGAAAAAAACTTTAGTTTGCTTTCATATTTGAAAAATACTCTTGCTGGGTATAGAATTCTACATTGACAGTTTTTTACCCCTTTTATTTCATCCCCT 121 2 59 47 0 2 G/+273 0.0165 2;0 36.0 1 40.8 1 60.0 4.000 0.0208 0.0165 70 3.000 1 0.5 2 96 TTTATGACTTAGTACTTAGG AAAAAAGTCTAAAAAGACTC 20:38386266-38409801 Insertion 0 2-0-0 -NA24385_chr_20_38386265_38409801 testbed 20 38398952 38398952 G GA 78 5 27 44 3 2 G/+1 0.0641 2;2 27.2 1 37.4 1 62.4 10.000 0.0694 0 7 8.000 1 0.6 5 72 ATTTCAGTGTTTCTATGTCT AAAAAAACTTTAGTTTGCTT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38398952 38398952 G GA 78 5 27 44 3 2 G/+1 0.0641 2;2 26.2 1 36.0 1 60.0 10.000 0.0694 0 7 8.000 1 0.6 5 72 ATTTCAGTGTTTCTATGTCT AAAAAAACTTTAGTTTGCTT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38398965 38398965 G C 79 2 31 46 2 0 G/C 0.0253 2;0 7.0 0 32.0 1 60.0 4.000 0.0267 0 1 3.000 1 2.0 2 75 TATGTCTGAAAAAAACTTTA TTTGCTTTCATATTTGAAAA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38398854 38398854 G A 105 2 52 51 0 2 G/A 0.0190 2;0 22.0 0 37.0 1 60.0 4.000 0.0192 0 0 1.000 1 2.0 2 104 TTCAGATGCATATTTTCATC TCTTATTTTCCTTCAGCCTG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38397966 38397967 AT A 126 4 53 69 2 2 T/-1 0.0317 2;2 38.0 1 42.0 0 60.0 8.000 0.0323 0 2 3.000 1 0 4 124 TTATAAAGTATGCATCACAT TTATTATTTTGTTTAAACAG 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38398176 38398176 A AGATTTTGCAGATGTGATCAAAGTGTTCTTTCCTTTTAGC 99 2 45 38 0 2 A/+39 0.0202 2;0 24.1 1 42.8 1 68.8 4.000 0.0241 0.0202 23 2.000 2 0.6 2 83 TTTAACATATATAATGAAAG GATTTTGCAGATGTGATCAA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38398176 38398176 A AGATTTTGCAGATGTGATCAAAGTGTTCTTTCCTTTTAGC 99 2 45 38 0 2 A/+39 0.0202 2;0 21.0 1 37.3 1 60.0 4.000 0.0241 0.0202 23 2.000 2 0.6 2 83 TTTAACATATATAATGAAAG GATTTTGCAGATGTGATCAA 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38398223 38398283 ATCCTGGATTATTCAGAAGGCCCTCACTTAATCACTTAATTCTCTAAAAGGAAAGAACCTT A 88 3 40 47 0 3 T/-60 0.0341 2;0 101.0 1 41.1 1 60.0 6.000 0.0353 0.0227 6 3.000 1 0 3 85 GGACCTTGTAATAGGAGCTT TCCTGGCTGAAGTCAGAGGC 20:38386266-38409801 Deletion 0 2-4-2 NA24385_chr_20_38386265_38409801 testbed 20 38399584 38399584 A G 87 2 43 42 2 0 A/G 0.0230 2;0 74.0 1 42.0 0 60.0 4.000 0.0238 0 2 2.000 2 2.5 2 84 TCTCTACTTAATTTTTAAAC TATGAGAAAAATTATACATC 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38399515 38399516 AT A 81 3 35 43 1 2 T/-1 0.0370 2;2 36.7 1 41.3 1 60.0 6.000 0.0400 0.0123 3 4.000 1 0 3 75 CATAGATCTTTCTCTCAAAC TTTACATTTTACCAATAATA 20:38386266-38409801 Deletion 0 0 @@ -248,7 +248,7 @@ NA24385_chr_20_38386265_38409801 testbed 20 38399763 38399763 G T 98 2 55 41 2 0 NA24385_chr_20_38386265_38409801 testbed 20 38399872 38399872 T G 92 2 48 41 0 2 T/G 0.0217 2;0 52.0 0 34.5 1 60.0 4.000 0.0227 0 4 1.000 1 4.0 2 88 GTTAGGGGAGACCAGAACAT GTTTATTCTACGACTAATCT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38399899 38399899 A T 84 4 45 35 1 3 A/T 0.0476 2;2 49.2 1 39.5 1 60.0 8.000 0.0488 0 0 1.000 1 1.0 4 82 TCTACGACTAATCTTTCTCT GTACTGAGGCAAGAACCTAT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38398977 38398978 AT A 86 2 36 48 1 1 T/-1 0.0233 2;2 45.5 1 42.0 0 60.0 4.000 0.0238 0 2 3.000 1 1.0 2 84 AAACTTTAGTTTGCTTTCAT TTGAAAAATACTCTTGCTGG 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38398981 38398981 G GA 85 2 36 46 1 1 G/+1 0.0235 2;2 40.0 1 43.1 0 61.6 4.000 0.0256 0 5 6.000 1 0 2 78 TTTAGTTTGCTTTCATATTT AAAAATACTCTTGCTGGGTA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38398981 38398981 G GA 85 2 36 46 1 1 G/+1 0.0235 2;2 39.0 1 42.0 0 60.0 4.000 0.0256 0 5 6.000 1 0 2 78 TTTAGTTTGCTTTCATATTT AAAAATACTCTTGCTGGGTA 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38399234 38399234 G A 106 2 56 48 2 0 G/A 0.0189 2;0 35.0 0 29.5 1 60.0 4.000 0.0198 0 0 3.000 1 1.0 2 101 TCTATGTTTGGTGTTTATAG GCTTTTCAAATCTACATATT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38399248 38399248 A T 107 2 57 48 1 1 A/T 0.0187 2;2 24.0 1 42.0 0 60.0 4.000 0.0196 0 0 1.000 1 1.0 2 102 TTATAGGGCTTTTCAAATCT CATATTTATAGTTTTAATCT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38399250 38399250 A G 103 3 57 43 1 2 A/G 0.0291 2;2 15.0 1 31.7 1 60.0 2.000 0.0211 0.0194 0 2.000 2 2.7 2 95 ATAGGGCTTTTCAAATCTAC TATTTATAGTTTTAATCTAA 20:38386266-38409801 SNV 0 0 @@ -260,9 +260,9 @@ NA24385_chr_20_38386265_38409801 testbed 20 38400950 38400952 ATA TAT 80 4 31 44 NA24385_chr_20_38386265_38409801 testbed 20 38400269 38400269 T A 75 2 32 41 1 1 T/A 0.0267 2;2 7.0 0 42.0 0 60.0 4.000 0.0290 0 0 2.000 1 1.0 2 69 CCATTTTTAAATAGCCAATT AATTGGAGAGATGGAAGCAA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38400318 38400318 G A 72 2 34 36 1 1 G/A 0.0278 2;2 16.5 1 42.0 0 60.0 4.000 0.0294 0 0 1.000 1 1.0 2 68 ACAATGAAAGTGATATTGGG CTTCACAAGACTATTTCACT 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38401628 38401630 TGA T 94 2 43 49 0 2 G/-2 0.0213 2;0 53.0 0 42.0 0 60.0 4.000 0.0227 0 2 2.000 2 0 2 88 GTTTCCCCAGAAGCAGACCT GACAAGGATTTAAGTGCAAG 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38401100 38401100 T TTA 85 2 43 37 1 1 T/+2 0.0235 2;2 34.0 1 39.6 1 62.8 4.000 0.0263 0.0118 8 5.000 2 0.5 2 76 CTCTATATATTATTTACATA TATATATAGAAAATATATAT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38401100 38401100 T TTA 85 2 43 37 1 1 T/+2 0.0235 2;2 32.5 1 37.8 1 60.0 4.000 0.0263 0.0118 8 5.000 2 0.5 2 76 CTCTATATATTATTTACATA TATATATAGAAAATATATAT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38401026 38401026 A T 99 2 56 40 1 1 A/T 0.0202 2;2 34.0 1 39.5 1 60.0 4.000 0.0208 0 1 3.000 2 1.0 2 96 TTATATTTATATGTTAGAAT TATAGAGAAATATATATAGA 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38401046 38401046 A AAT 94 2 55 33 2 0 A/+2 0.0213 2;0 34.8 0 44.2 0 63.2 4.000 0.0250 0 9 5.000 2 2.6 2 80 ATATAGAGAAATATATATAG ATATATATAGAGAAAATACA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38401046 38401046 A AAT 94 2 55 33 2 0 A/+2 0.0213 2;0 33.0 0 42.0 0 60.0 4.000 0.0250 0 9 5.000 2 2.6 2 80 ATATAGAGAAATATATATAG ATATATATAGAGAAAATACA 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38401216 38401216 A T 83 3 30 50 2 1 A/T 0.0361 2;2 7.0 0 42.0 0 60.0 6.000 0.0366 0 1 2.000 1 2.0 3 82 TATCATATATTAAAATACAT ATGTATATTCAAATACTTTG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38401165 38401165 T A 75 5 32 38 1 4 T/A 0.0667 2;2 29.2 1 40.0 1 60.0 10.000 0.0714 0 1 4.000 2 3.6 5 70 TTCTATATATTTCTGTATAT ATATATAATTATATATTATA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38401157 38401159 CTG C 71 4 34 33 0 4 T/-2 0.0563 2;0 40.0 0 42.0 0 60.0 8.000 0.0645 0 1 1.000 1 4.0 4 62 TACATGTATTCTATATATTT TATATTATATATAATTATAT 20:38386266-38409801 Deletion 0 0 @@ -274,20 +274,20 @@ NA24385_chr_20_38386265_38409801 testbed 20 38401349 38401349 A T 63 2 32 29 0 2 NA24385_chr_20_38386265_38409801 testbed 20 38401402 38401403 TA T 66 2 39 24 2 0 A/-1 0.0303 2;0 46.0 0 42.0 0 60.0 4.000 0.0312 0 4 5.000 1 0 2 64 TGTTTTGGTTTGCTGAGCTA AAAATATGTCGGGGGCTAAC 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38401284 38401284 A T 72 3 25 44 0 3 A/T 0.0417 2;0 7.0 1 31.7 1 60.0 2.000 0.0308 0 0 3.000 1 2.7 2 65 ACAGTATTTCTATAAAAATA ATATTTTATATATTTCTATA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38401321 38401325 TCTAG CTAGA 78 11 34 33 0 11 T/-5iCTAGA 0.1410 2;0 16.8 1 41.6 1 60.0 22.000 0.1549 0 0 1.000 1 1.3 11 71 TATATATCTATATTTCTATG CATAGAAATATATATATTAT 20:38386266-38409801 Complex 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38401332 38401332 A AAT 78 3 30 42 3 0 A/+2 0.0385 2;0 49.8 1 43.6 1 63.6 6.000 0.0441 0 10 6.000 2 0.4 3 68 ATTTCTATGTCTAGCATAGA ATATATATATTATTAAAAAT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38401332 38401332 A AAT 78 3 30 42 3 0 A/+2 0.0385 2;0 47.0 1 41.2 1 60.0 6.000 0.0441 0 10 6.000 2 0.4 3 68 ATTTCTATGTCTAGCATAGA ATATATATATTATTAAAAAT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38401488 38401489 CT C 63 2 36 24 2 0 T/-1 0.0317 2;0 24.0 0 42.0 0 60.0 4.000 0.0323 0 1 2.000 1 1.0 2 62 AGGGTCTGGACTGAGCCACA TGAAAGATAACAAATATACT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38402628 38402629 GA G 101 2 37 60 1 1 A/-1 0.0198 2;2 13.5 1 42.0 0 60.0 4.000 0.0225 0 1 2.000 1 0 2 89 TGAGGTAAAGAAGAGTGTCT AGTCAGTAACTATTGTTTTG 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38386267 38386267 G A 64 2 25 37 2 0 G/A 0.0312 2;0 6.0 0 42.0 0 60.0 4.000 0.0364 0 0 2.000 1 2.0 2 55 CAAAAGTCCAGGATACCTGG CCTCTGTCTTCCTTTTACCA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38402681 38402682 CT C 137 2 60 74 0 2 T/-1 0.0146 2;0 31.5 1 34.5 1 60.0 4.000 0.0159 0 2 3.000 1 0.5 2 126 TTTTACCCCCACATCTTATT TTACCCACCCAAATCTTTGA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38402793 38402794 CT C 115 3 54 57 0 3 T/-1 0.0261 2;0 35.0 0 42.0 0 60.0 6.000 0.0283 0 1 3.000 1 0 3 106 GATGGGCAGGAACCATCTCC TAGTTCTAAGATCAACCCAA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38386334 38386335 GA G 100 2 55 42 2 0 A/-1 0.0200 2;0 20.5 1 39.5 1 34.5 4.000 0.0206 0 9 10.000 1 2.0 2 97 TCTGAGCACTCACTGGCACT AAAAAAAAATCACAGAAGTA 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38386334 38386334 G GA 99 3 51 39 2 1 G/+1 0.0303 2;2 44.2 1 38.5 1 63.6 6.000 0.0333 0.0101 10 11.000 1 0.4 3 90 TCTGAGCACTCACTGGCACT AAAAAAAAAATCACAGAAGT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38386334 38386334 G GA 99 3 51 39 2 1 G/+1 0.0303 2;2 41.7 1 36.3 1 60.0 6.000 0.0333 0.0101 10 11.000 1 0.4 3 90 TCTGAGCACTCACTGGCACT AAAAAAAAAATCACAGAAGT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38386327 38386781 T 106 3 57 45 0 3 T/ 0.0283 2;0 41.0 1 38.3 1 60.0 6.000 0.0312 0.0283 1 1.000 1 0 3 96 TTATATATCTGAGCACTCAC TCCTTCTCCTCTCAATCTGA 20:38386266-38409801 INV 0 3-0-0 NA24385_chr_20_38386265_38409801 testbed 20 38402744 38402744 G A 122 2 60 60 1 1 G/A 0.0164 2;2 35.5 1 39.5 1 60.0 4.000 0.0171 0 2 1.000 1 1.5 2 117 ATAAGGCAGGCAGGCAGGAA TGATGGTGGTACAAAATTAG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38386450 38386450 T TTTATGGGGATATCACCTAAGTACAGCCTGACGCCCCATGCTACCCTCACTCCCAAGACCAGCCAAGAAAGATGGATCAGGAAGCCAGGTCAACAGTTCCATCTTTGATACTTACTAGCTATAAGACTGAAGAAGTTGTCCGATATCTTTGTCTCAGTTTTTTTTATATGAAAAATGACAGACAATTCATGAGGTTGTTGTGAAGACTAAAAGAAAGATTAAAAGTATTGCATTGTTATCTCGTATAAAATTAAGACTTAAAAAAATAATTTCCCTCTCTCCATCTCTTTCTTTCTTTTCA 98 3 51 47 0 3 T/+300 0.0306 2;0 17.7 1 40.4 1 60.0 6.000 0.0326 0.0306 70 3.000 1 0.3 3 92 TCAAGGAGTGGGATGATGAC TTATGGGGATATCACCTAAG 20:38386266-38409801 Insertion 0 3-4-2 NA24385_chr_20_38386265_38409801 testbed 20 38403042 38403043 GT G 84 2 37 44 1 1 T/-1 0.0238 2;2 24.5 1 39.5 1 60.0 4.000 0.0274 0.0119 1 2.000 1 0.5 2 73 ACTTAGTGTAGATACTAAGA TGGGGGTGCATTGTTCAAAA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38402950 38402951 AT A 89 2 47 40 1 1 T/-1 0.0225 2;2 59.5 1 37.0 1 60.0 4.000 0.0238 0 1 2.000 1 0 2 84 TAAATGTGATCGTGTACCAC TCCCCCTCCTCTCTTGCCCC 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38386606 38386606 G GT 71 2 21 42 0 2 G/+1 0.0282 2;0 33.5 1 44.0 0 62.8 4.000 0.0317 0 8 9.000 1 0 2 63 TGTCCGATATCTTTGTCTCA TTTTTTTTATATGAAAAATG 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38386606 38386606 G GT 71 2 21 42 0 2 G/+1 0.0282 2;0 32.0 1 42.0 0 60.0 4.000 0.0317 0 8 9.000 1 0 2 63 TGTCCGATATCTTTGTCTCA TTTTTTTTATATGAAAAATG 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38402157 38402157 G GATCCATGCCACCATCCAGCTTTGTAGAGAAGGCAGCACTGTTTCCCTTTCTTGAAGGATCACCCTGCCCTCTAGGTGGCATATGTGTGTACCCCAAGATCTAGACACTGAGAATGGAACTCGGTAGCCTCTCTGCGGAGAAAGACAAACCCTTATGAAGATCAGATGAGGCTTTCATTGCAGGAGGCCTTATACTATTTACCC 89 6 43 46 3 3 G/+203 0.0674 2;2 27.0 1 38.0 1 60.0 12.000 0.0638 0.0674 70 3.000 1 0.7 6 94 CCTCATGTGCTCTCAGACCT ATCCATGCCACCATCCAGCT 20:38386266-38409801 Insertion 0 6-0-0 NA24385_chr_20_38386265_38409801 testbed 20 38402299 38402299 A T 64 3 21 39 0 3 A/T 0.0469 2;0 12.0 0 40.3 1 60.0 6.000 0.0492 0 1 1.000 1 1.0 3 61 GGTAGCCTCTCTGCGGAGAA GACAAACCCTTATGAAGATC 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38402328 38402329 CT C 65 2 26 37 1 1 T/-1 0.0308 2;2 22.5 1 41.2 1 60.0 4.000 0.0328 0.0154 2 3.000 1 0.5 2 61 CTTATGAAGATCAGATGAGG TTCATTGCAGGAGGCCTTAT 20:38386266-38409801 Deletion 0 0 @@ -297,35 +297,35 @@ NA24385_chr_20_38386265_38409801 testbed 20 38402470 38402548 TCAGTTGTATTTCCCATT NA24385_chr_20_38386265_38409801 testbed 20 38402469 38402470 CT C 97 4 55 38 2 2 T/-1 0.0412 2;2 49.5 1 42.0 0 60.0 8.000 0.0460 0 0 3.000 1 0 4 87 TTTGGCTTTTAGGATTTGGC CAGTTGTATTTCCCATTAGT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38402485 38402487 ATT A 96 2 51 43 2 0 T/-2 0.0208 2;0 57.0 0 42.0 0 60.0 4.000 0.0225 0 0 2.000 1 0 2 89 TGGCCTCAGTTGTATTTCCC AGTCATTTTCCCTGCAATAA 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38387243 38387248 TTTTTG GT 102 2 42 58 0 2 TTG/-4GT 0.0196 2;0 18.5 1 39.5 1 60.0 4.000 0.0215 0.0098 1 10.000 1 0.5 2 93 TTTATTTACCCTGGGTTTTT TTTTTTTTTTTAACAGATAT 20:38386266-38409801 Complex 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38387237 38387237 G GT 108 8 47 46 3 5 G/+1 0.0741 2;2 17.5 1 36.6 1 63.6 7.000 0.0778 0.0278 10 11.000 1 0.5 7 90 TGCAGTTTTATTTACCCTGG TTTTTTTTTTGTTTTTTTTT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38387237 38387237 G GT 108 8 47 46 3 5 G/+1 0.0741 2;2 16.5 1 34.5 1 60.0 7.000 0.0778 0.0278 10 11.000 1 0.5 7 90 TGCAGTTTTATTTACCCTGG TTTTTTTTTTGTTTTTTTTT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38403646 38403646 A T 79 2 45 31 1 1 A/T 0.0253 2;2 45.5 1 42.0 0 60.0 4.000 0.0286 0 2 1.000 1 1.0 2 70 CAGCCTTGCCATTCAGACCC GCTCCTTACTGGTACAACCC 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38387248 38387249 GT G 98 4 40 54 0 4 T/-1 0.0408 2;0 28.0 1 40.8 1 60.0 8.000 0.0455 0 10 11.000 1 0 4 88 TTACCCTGGGTTTTTTTTTT TTTTTTTTTTAACAGATATT 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38387248 38387248 G GT 97 4 35 44 1 3 G/+1 0.0412 2;2 34.9 1 40.8 1 64.0 8.000 0.0526 0 11 12.000 1 2.4 4 76 TTACCCTGGGTTTTTTTTTT TTTTTTTTTTTAACAGATAT 20:38386266-38409801 Insertion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38387375 38387375 G GA 86 2 40 41 0 2 G/+1 0.0233 2;0 51.3 0 43.1 0 61.6 4.000 0.0250 0 5 6.000 1 1.0 2 80 CCAAATTCATTAGAAACCAA AAAAAGAAGAGAAAAAATCA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38387248 38387248 G GT 97 4 35 44 1 3 G/+1 0.0412 2;2 32.8 1 38.2 1 60.0 8.000 0.0526 0 11 12.000 1 2.4 4 76 TTACCCTGGGTTTTTTTTTT TTTTTTTTTTTAACAGATAT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38387375 38387375 G GA 86 2 40 41 0 2 G/+1 0.0233 2;0 50.0 0 42.0 0 60.0 4.000 0.0250 0 5 6.000 1 1.0 2 80 CCAAATTCATTAGAAACCAA AAAAAGAAGAGAAAAAATCA 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38387384 38387384 G A 86 3 40 42 0 3 G/A 0.0349 2;0 10.0 0 42.0 0 60.0 6.000 0.0375 0 0 2.000 2 1.7 3 80 TTAGAAACCAAGAAAAAGAA AGAAAAAATCAACAGTAGTA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38403918 38403918 G C 74 2 31 41 2 0 G/C 0.0270 2;0 12.0 0 42.0 0 60.0 4.000 0.0274 0 2 1.000 1 1.0 2 73 CTCCTTTTGGCCTCTGGCAG ACTGGAAATCCACTTGGGGA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38403933 38403933 T A 69 2 28 39 0 2 T/A 0.0290 2;0 50.0 0 42.0 0 60.0 4.000 0.0308 0 0 4.000 1 1.0 2 65 GGCAGGACTGGAAATCCACT GGGGATGGGGTAGCAAAGGC 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38387650 38387651 TC T 112 2 50 60 0 2 C/-1 0.0179 2;0 46.0 0 39.5 1 60.0 4.000 0.0183 0 1 5.000 1 0 2 109 TTGGACACATTTTTTCTTTT CAGCCCAGATGAACTTCCTC 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38387698 38387699 GT G 105 2 36 65 2 0 T/-1 0.0190 2;0 15.0 0 34.5 1 60.0 4.000 0.0202 0 2 3.000 1 0 2 99 CCGCTCTGATGATAAGCCCT TTAGGCTCGTGCTTTCATCT 20:38386266-38409801 Deletion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38387591 38387591 A ATGGATGAAGCAGTTCTGGATGTTGGGGTTCTGGATGGCTAAGTTCTGGATAGGGCGGTTC 114 2 64 34 0 2 A/+60 0.0175 2;0 73.4 1 45.8 1 0 4.000 0.0215 0.0175 19 2.000 1 0 2 93 CTAGCTTACAGAATCAGGCA TGGATGAAGCAGTTCTGGAA 20:38386266-38409801 Insertion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38387638 38387638 A AT 109 3 46 56 0 3 A/+1 0.0275 2;0 58.9 0 43.4 0 62.0 6.000 0.0333 0 6 7.000 1 0 3 90 CCTTCCGCCAACTTGGACAC TTTTTTCTTTTTCCAGCCCA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38387591 38387591 A ATGGATGAAGCAGTTCTGGATGTTGGGGTTCTGGATGGCTAAGTTCTGGATAGGGCGGTTC 114 2 64 34 0 2 A/+60 0.0175 2;0 65.5 1 40.9 1 0 4.000 0.0215 0.0175 19 2.000 1 0 2 93 CTAGCTTACAGAATCAGGCA TGGATGAAGCAGTTCTGGAA 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38387638 38387638 A AT 109 3 46 56 0 3 A/+1 0.0275 2;0 57.0 0 42.0 0 60.0 6.000 0.0333 0 6 7.000 1 0 3 90 CCTTCCGCCAACTTGGACAC TTTTTTCTTTTTCCAGCCCA 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38403167 38403167 A T 85 3 38 42 3 0 A/T 0.0353 2;0 66.0 0 42.0 0 60.0 6.000 0.0380 0 1 2.000 4 1.0 3 79 AATAAAGTGATGAAAAAGAA GACAGTCTCAGTCCTCAAGA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38403155 38403156 GA G 86 2 42 42 1 1 A/-1 0.0233 2;2 25.5 1 42.0 0 60.0 4.000 0.0250 0 0 2.000 2 0 2 80 TTAGACACCTGCAATAAAGT TGAAAAAGAAAGACAGTCTC 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38386805 38386805 T A 73 2 29 42 2 0 T/A 0.0274 2;0 44.0 0 42.0 0 60.0 4.000 0.0278 0 0 3.000 1 1.0 2 72 TTCTCCTCTCAATCTGATGT AAAGCTCTATACAGATATTC 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38403076 38403076 G T 91 2 42 47 2 0 G/T 0.0220 2;0 34.0 0 39.5 1 60.0 4.000 0.0238 0 0 2.000 1 1.0 2 84 GTTCAAAATCTCTGATCTTT GTAAAGTTCACTCATTAAGT 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38403099 38403099 G GT 92 4 40 42 0 4 G/+1 0.0435 2;0 34.1 1 43.7 0 62.4 8.000 0.0482 0 7 8.000 1 1.0 4 83 AAAGTTCACTCATTAAGTCT TTTTTTTAAGCATCTGATCC 20:38386266-38409801 Insertion 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38403099 38403099 G GTT 92 2 40 42 2 0 G/+2 0.0217 2;0 11.4 0 43.7 0 62.4 4.000 0.0241 0 7 9.000 1 0 2 83 AAAGTTCACTCATTAAGTCT TTTTTTTAAGCATCTGATCC 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38403099 38403099 G GT 92 4 40 42 0 4 G/+1 0.0435 2;0 32.8 1 42.0 0 60.0 8.000 0.0482 0 7 8.000 1 1.0 4 83 AAAGTTCACTCATTAAGTCT TTTTTTTAAGCATCTGATCC 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38403099 38403099 G GTT 92 2 40 42 2 0 G/+2 0.0217 2;0 11.0 0 42.0 0 60.0 4.000 0.0241 0 7 9.000 1 0 2 83 AAAGTTCACTCATTAAGTCT TTTTTTTAAGCATCTGATCC 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38386708 38386709 TA T 58 3 21 34 1 2 A/-1 0.0517 2;2 28.0 1 35.9 1 60.0 6.000 0.0566 0.0172 6 7.000 1 1.7 3 53 TCTCGTATAAAATTAAGACT AAAAAATAATTTCCCTCTCT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38386735 38386735 T TCTTTCTTTCTTTTCTTCCCCTTTACTTCCTTCATTTTTCCCTGCCATCCTTCTCCTCTCAATCTGATGTTAAAGCTCTATACAGATATTCGTTATTTTGCTATTGTTGTTGTTGTTGTTGATACTATTATTATTTTTGATACCACTATTATTTTGTTGTGCAGTTTTGTTTTGTTTTGTTTTTTGAGATGGGGTTTTCCTCTGTCACCCAGGCTGGAGTGCAGTGGC 88 5 32 45 2 3 T/+227 0.0568 2;2 10.2 1 30.9 1 60.0 4.000 0.0533 0.0568 70 2.000 1 0.6 4 75 ATAATTTCCCTCTCTCCATC CTTTCTTTCTTTTCTTCCCC 20:38386266-38409801 Insertion 0 5-0-0 -NA24385_chr_20_38386265_38409801 testbed 20 38386913 38386913 G GT 70 3 48 17 1 2 G/+1 0.0429 2;2 48.6 1 43.4 0 62.0 6.000 0.0462 0 6 7.000 1 1.0 3 65 GTGCAGTTTTGTTTTGTTTT TTTTTTGAGATGGGGTTTTC 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38386913 38386913 G GT 70 3 48 17 1 2 G/+1 0.0429 2;2 47.0 1 42.0 0 60.0 6.000 0.0462 0 6 7.000 1 1.0 3 65 GTGCAGTTTTGTTTTGTTTT TTTTTTGAGATGGGGTTTTC 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38386943 38386943 T C 74 74 0 0 52 22 C/C 1.0000 0;2 36.8 1 37.5 1 59.9 9.571 1.0000 0 0 1.000 1 1.6 67 67 ATGGGGTTTTCCTCTGTCAC CAGGCTGGAGTGCAGTGGCA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38386835 38387084 CTATTGTTGTTGTTGTTGTTGATACTATTATTATTTTTGATACCACTATTATTTTGTTGTGCAGTTTTGTTTTGTTTTGTTTTTTGAGATGGGGTTTTCCTCTGTCACTCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGTAGCCTCCGCCTCCAGGGTTCCAGGGCTTCTCTTTCCTCAGTCTCCTGGGTAGCTGGGATTACAGGCACACGCTAGCACATGCCACCATACCTGGCTAATTTTTG C 73 5 38 35 0 5 T/-249 0.0685 2;0 280.0 1 41.1 1 60.0 10.000 0.0649 0.0411 4 1.000 1 0.3 5 77 TACAGATATTCGTTATTTTG TATTTTTAGTAGAGATGGGG 20:38386266-38409801 Deletion 0 3-5-2 NA24385_chr_20_38386265_38409801 testbed 20 38403250 38403250 C A 72 2 31 39 1 1 C/A 0.0278 2;2 24.0 1 42.0 0 60.0 4.000 0.0290 0 1 2.000 1 1.0 2 69 ACATTAATTCAATAGTTATG AACATCTCTGTGCCTTAGTT 20:38386266-38409801 SNV 0 0 -NA24385_chr_20_38386265_38409801 testbed 20 38387010 38387010 T TCTTTCCCGAGTCCTC 75 4 40 28 0 4 T/+15 0.0533 2;0 62.0 1 37.1 1 0 8.000 0.0597 0.0533 6 2.000 1 0.5 4 67 CTCCAGGGTTCCAGGGCTTC CTTTCCTCAGTCTCCTGGGT 20:38386266-38409801 Insertion 0 0 +NA24385_chr_20_38386265_38409801 testbed 20 38387010 38387010 T TCTTTCCCGAGTCCTC 75 4 40 28 0 4 T/+15 0.0533 2;0 60.0 1 35.9 1 0 8.000 0.0597 0.0533 6 2.000 1 0.5 4 67 CTCCAGGGTTCCAGGGCTTC CTTTCCTCAGTCTCCTGGGT 20:38386266-38409801 Insertion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38403410 38403410 T A 92 3 51 38 0 3 T/A 0.0326 2;0 7.0 0 42.0 0 60.0 6.000 0.0333 0 0 1.000 1 1.0 3 90 ATCCATTCTCTGGTAGAGGC GAATTCTAAAGATTCTGGTC 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38403330 38403331 GA G 77 2 41 34 2 0 A/-1 0.0260 2;0 42.0 0 42.0 0 60.0 4.000 0.0267 0 0 1.000 1 0 2 75 ACTTTGTGTTGTAAGAGTTA TGACCTAAGATGGAATCGAT 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38387006 38387007 CT C 70 2 39 29 1 1 T/-1 0.0286 2;2 35.5 1 42.0 0 60.0 4.000 0.0312 0 1 2.000 1 1.0 2 64 CCGCCTCCAGGGTTCCAGGG TCTCTTTCCTCAGTCTCCTG 20:38386266-38409801 Deletion 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38403524 38403524 C A 90 3 42 45 0 3 C/A 0.0333 2;0 43.0 0 40.3 1 60.0 6.000 0.0337 0 0 3.000 1 1.0 3 89 TCTTGTGCTCTGGACACAAA CCTAAGCCAGGTGTACCTGG 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38403479 38403479 G T 96 4 53 39 1 3 G/T 0.0417 2;2 12.8 1 34.2 1 60.0 3.000 0.0330 0.0312 1 3.000 1 1.5 3 91 AATCAGATGAATTCTGCAAG GACTGGCACAGAATAGGGAA 20:38386266-38409801 SNV 0 0 NA24385_chr_20_38386265_38409801 testbed 20 38403494 38403494 A AGGGAACCCTTCTTGTGCTCTGGACACAAACCCTAAGCCAGGTGTACCTGGACATCATTTTCTAGGATGCACAAAGGGTCTTCATTCATTAATGCCTTGCACATGTCAGAAGGGAAGAGAGGCTTTGGGCCTCAGCCTTGCCATTCAGACCCAGCTCCTTACTGGTACAACCCTTCCATATCCCTTACTTCCAGGGCCTGGGAGCATGGTCTGCAATGCCCAATCATGTCTGGATGTGCCTCCAGGTTCAGACATTACTATCCCTGCTTTTTCTGGTTTTCATTTCCTTTTCTTGTGTGCTAGGCTTTTG 98 2 54 44 2 0 A/+309 0.0204 2;0 30.0 1 41.1 1 60.0 4.000 0.0211 0.0204 70 4.000 1 2.0 2 95 GCAAGGGACTGGCACAGAAT GGGAACCCTTCTTGTGCTCT 20:38386266-38409801 Insertion 0 2-0-0 -NA24385_chr_20_38386265_38409801 testbed 20 38387120 38387120 C CAGGCTGTTCTCGATCTCCTGACCTCAGGTGGCAAACCCCATCTCTACTAGTAGAGATGGGGTGGAAA 105 4 43 38 2 2 C/+67 0.0381 2;2 23.5 1 49.2 1 72.4 8.000 0.0500 0.0381 32 4.000 1 0.3 4 80 TGGGGTTTCACAATGTTGGC AGGCTGTTCTCGATCTCCTG 20:38386266-38409801 Insertion 0 0 \ No newline at end of file +NA24385_chr_20_38386265_38409801 testbed 20 38387120 38387120 C CAGGCTGTTCTCGATCTCCTGACCTCAGGTGGCAAACCCCATCTCTACTAGTAGAGATGGGGTGGAAA 105 4 43 38 2 2 C/+67 0.0381 2;2 19.5 1 40.8 1 60.0 8.000 0.0500 0.0381 32 4.000 1 0.3 4 80 TGGGGTTTCACAATGTTGGC AGGCTGTTCTCGATCTCCTG 20:38386266-38409801 Insertion 0 0 \ No newline at end of file diff --git a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_44885701_44969115.bam;chr20;44885701;44969115;-f0.001.txt b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_44885701_44969115.bam;chr20;44885701;44969115;-f0.001.txt index 41f4e3a..a34ace1 100644 --- a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_44885701_44969115.bam;chr20;44885701;44969115;-f0.001.txt +++ b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_chr_20_44885701_44969115.bam;chr20;44885701;44969115;-f0.001.txt @@ -2,13 +2,13 @@ Simple,GRCh37.fa,NA24385_chr_20_44885701_44969115.bam,chr20,44885701,44969115,-f NA24385_chr_20_44885701_44969115 testbed 20 44958383 44958388 CTGCAG C 73 2 31 40 0 2 T/-5 0.0274 2;0 62.0 0 42.0 0 60.0 4.000 0.0299 0 3 1.000 1 0 2 67 GAAGCCACGTGGTCCTGGGG TGCCCCCATGCCGGGCTCCC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44892897 44892897 A AGGGACACAGTGGAATGTGTCCCAAGCTTTGTTCCTTTGGGGAACAACCTTGGCAGATCACAGGCACAGGGAAGGAAGAAAGAGAGGCCAGTTGCATACCTTGAGCTGATTCTGAGTCAGTGAGAATAATGATAGATAACATTTATAGCGCTTTTACTATGTGCCAGGCATGGTGCCATCCAATTAGCTAATAATAAGAGGTAACACTGAGTTCCATGCAGGGCACTTTATATCAATGATCTGAT 91 2 46 45 1 1 A/+244 0.0220 2;2 25.0 1 37.4 1 60.0 4.000 0.0225 0.0220 70 3.000 1 0 2 89 CCAATGAGAAGGCTAGGCAA GGGACACAGTGGAATGTGTC 20:44885702-44969115 Insertion 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44892912 44892912 T A 98 45 26 27 26 19 T/A 0.4592 2;2 38.4 1 39.7 1 60.0 21.500 0.4574 0 0 2.000 2 1.3 43 94 GGCAAAGGGACACAGTGGAA GTGTCCCAAGCTTTGTTCCT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44892872 44892872 T TCACTCCAATGAGAAGGCTAGGCAAAGGGACACAGTGGAAAGTGTCCCAAGCTTTGTTCCTTTGGGGAACAACCTTGGCAGATCACAGGCACAGGGAAGGAAGAAAGAGAGGCCAGTTGCATACCTTGAGCTGATTCTGAGTCAGTGAGAATAATGATAGATAACATTTATAGCGCTTTTACTATGTGCCAGGCATGGTGCCATCCAATTAGCTAATAATAAGAGGTAACACTGAGTTCCATGCAGGGCACTTTATATCAATGATCTGATTGAATCCTCACAATAGCTGTCTTTAAAATTTCTATTACAGAATCAGGAACAGTGGCTCAGAGAGGTTGAGGGACTTGCCCAAGGTCACACAGCTAGTTAGTGGAGGATCTGGAATTCAAACAGGCTCTGGCAGTGGGAGGGAAATGAGGATGGGCCGGGAGGTGCTCAGTGGCTGCTGGAAAGGACAGGCCTGCGTTTGGCTCTCAGCATGAACCATGTCCTTCCCCCACGCTACTTGACGTGACTTAACCCAGGCCTGAGTCCCTCCTTAAGGCCTGACCTCCCGTGCAAATTATGAACATGTATGAGTATGCACACACACACACACACCATGCACACACACACACCGTGCACACACACACACCGTGCGCACACACACACACCGTGCGCGCACACACACCGTGCGCACACACACATACCGTGTACACATGCAGACTCCTTGGCTAGCACTGCTCACCTGCCCAGGGGCAACCTGTTAGAACCCTCCACCTCAGGTGCCCCTGGCCTGCA 91 2 37 30 1 1 T/+779 0.0220 2;2 58.9 1 50.5 1 75.2 4.000 0.0312 0.0220 39 2.000 2 0.6 2 64 ATCCCCTTCACAATCTCACT CACTCCAATGAGAAGGCTAG 20:44885702-44969115 Insertion 0 2-7-2 +NA24385_chr_20_44885701_44969115 testbed 20 44892872 44892872 T TCACTCCAATGAGAAGGCTAGGCAAAGGGACACAGTGGAAAGTGTCCCAAGCTTTGTTCCTTTGGGGAACAACCTTGGCAGATCACAGGCACAGGGAAGGAAGAAAGAGAGGCCAGTTGCATACCTTGAGCTGATTCTGAGTCAGTGAGAATAATGATAGATAACATTTATAGCGCTTTTACTATGTGCCAGGCATGGTGCCATCCAATTAGCTAATAATAAGAGGTAACACTGAGTTCCATGCAGGGCACTTTATATCAATGATCTGATTGAATCCTCACAATAGCTGTCTTTAAAATTTCTATTACAGAATCAGGAACAGTGGCTCAGAGAGGTTGAGGGACTTGCCCAAGGTCACACAGCTAGTTAGTGGAGGATCTGGAATTCAAACAGGCTCTGGCAGTGGGAGGGAAATGAGGATGGGCCGGGAGGTGCTCAGTGGCTGCTGGAAAGGACAGGCCTGCGTTTGGCTCTCAGCATGAACCATGTCCTTCCCCCACGCTACTTGACGTGACTTAACCCAGGCCTGAGTCCCTCCTTAAGGCCTGACCTCCCGTGCAAATTATGAACATGTATGAGTATGCACACACACACACACACCATGCACACACACACACCGTGCACACACACACACCGTGCGCACACACACACACCGTGCGCGCACACACACCGTGCGCACACACACATACCGTGTACACATGCAGACTCCTTGGCTAGCACTGCTCACCTGCCCAGGGGCAACCTGTTAGAACCCTCCACCTCAGGTGCCCCTGGCCTGCA 91 2 37 30 1 1 T/+779 0.0220 2;2 47.0 1 40.3 1 60.0 4.000 0.0312 0.0220 39 2.000 2 0.6 2 64 ATCCCCTTCACAATCTCACT CACTCCAATGAGAAGGCTAG 20:44885702-44969115 Insertion 0 2-7-2 NA24385_chr_20_44885701_44969115 testbed 20 44958426 44958427 GA G 69 2 29 38 1 1 A/-1 0.0290 2;2 48.0 1 42.0 0 60.0 4.000 0.0323 0 0 2.000 1 0 2 62 CCCTGGCTGCTGCGGCTCCT GCACCAGGCTAGTCATGGAT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44925511 44925511 T G 60 4 22 34 3 1 T/G 0.0667 2;2 6.5 1 25.8 1 60.0 3.000 0.0545 0.0500 0 3.000 1 1.8 3 55 CAGCAAGAGTCTCCAGCTTC CCCAGCCCGTAAGACGAGCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44958277 44958277 A G 75 3 31 41 2 1 A/G 0.0400 2;2 11.0 1 31.7 1 53.7 2.000 0.0290 0 1 1.000 1 2.7 2 69 CTGGAGCTCATAACATATGA CTTGAGATTCAGCAATACAT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44893056 44893056 T A 88 3 38 47 0 3 T/A 0.0341 2;0 57.0 0 35.3 1 60.0 2.000 0.0238 0 2 2.000 2 1.3 2 84 CATTTATAGCGCTTTTACTA GTGCCAGGCATGGTGCCATC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44925849 44925849 T C 79 2 41 35 1 1 T/C 0.0253 2;2 37.0 1 34.5 1 60.0 4.000 0.0274 0 0 1.000 1 1.0 2 73 GCTCCAGGAGGGGCAGGGGC GAGTGAGGAGGTCAGGGCTC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44925843 44925843 A AG 76 3 40 33 3 0 A/+1 0.0395 2;0 10.9 1 34.9 1 61.2 6.000 0.0448 0.0132 4 5.000 1 0.3 3 67 TCAAGGGCTCCAGGAGGGGC GGGGCTGAGTGAGGAGGTCA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44925843 44925843 A AG 76 3 40 33 3 0 A/+1 0.0395 2;0 10.7 1 34.2 1 60.0 6.000 0.0448 0.0132 4 5.000 1 0.3 3 67 TCAAGGGCTCCAGGAGGGGC GGGGCTGAGTGAGGAGGTCA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44893165 44893167 TAA T 96 2 52 42 0 2 A/-2 0.0208 2;0 26.0 0 42.0 0 60.0 4.000 0.0217 0 2 4.000 1 0 2 92 ATCCTCACAATAGCTGTCTT AATTTCTATTACAGAATCAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44958719 44958719 C CAGCCTCCGGCAGCTCCTCCTGAGCCTCCTGGACTCTGAGTTTACCCCGAGAGACTCTAGGTTGGGCTGCCAGGGGAGCTGGAGGCAGGTGGGCTGGGCCCCCCCTCTGCCCCTCCCTGTGCGCCTCCTCCCTTGGGCTGGCTGTGGTG 63 2 37 20 1 1 C/+148 0.0317 2;2 44.0 1 35.7 1 60.0 4.000 0.0351 0.0317 70 2.000 3 0 2 57 TGGGGTCCTAGGCCTCCGCA AGCCTCCGGCAGCTCCTCCT 20:44885702-44969115 Insertion 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44925898 44925899 GA G 70 2 32 35 2 0 A/-1 0.0286 2;0 27.5 1 42.0 0 60.0 4.000 0.0323 0 1 3.000 1 0.5 2 62 GGGATGCGGGCTCCTTGAGG ATGCAGGCTCAGAGAGGAGA 20:44885702-44969115 Deletion 0 0 @@ -19,9 +19,9 @@ NA24385_chr_20_44885701_44969115 testbed 20 44925176 44925176 A G 88 3 49 36 3 0 NA24385_chr_20_44885701_44969115 testbed 20 44957944 44957944 A G 92 2 47 42 2 0 A/G 0.0217 2;0 6.0 0 42.0 0 60.0 4.000 0.0238 0 0 2.000 1 1.0 2 84 TTATCATATTGCCAGCCAGG TTATGCAAATGGGAGGGACA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44892354 44892355 GA G 83 2 41 40 0 2 A/-1 0.0241 2;0 62.0 0 42.0 0 60.0 4.000 0.0256 0 1 4.000 1 0 2 78 AGGGGACCGAAAGGCCAGGG AGAGCAGAGTGTGAGGGGAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44925136 44925137 GA G 84 2 44 38 1 1 A/-1 0.0238 2;2 24.0 1 39.5 1 60.0 4.000 0.0263 0 0 2.000 1 0.5 2 76 CATTATTCCTGTCCTCAATG CCAGTTAGAGAGGCAAGACA 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44957736 44957736 G GC 73 4 44 24 1 3 G/+1 0.0548 2;2 26.4 1 38.2 1 62.0 8.000 0.0580 0 6 7.000 1 0.3 4 69 CAACCCTGGGAAGCAGGCAG CCCCCCTATCATCAACCCAG 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44892185 44892185 G GC 98 4 42 49 1 3 G/+1 0.0408 2;2 32.3 1 41.8 1 61.6 8.000 0.0455 0 5 6.000 1 0.3 4 88 GCAAAGAGAAAGTACAAGGA CCCCCACATTTATAGGGGAC 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44892260 44892260 G GTT 101 2 37 56 2 0 G/+2 0.0198 2;0 43.4 0 35.6 1 62.0 4.000 0.0220 0 6 8.000 1 2.1 2 91 GAACAGTTCCCTGAGAAGGG TTTTTTAGCTGAAACCCAAA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44957736 44957736 G GC 73 4 44 24 1 3 G/+1 0.0548 2;2 25.5 1 37.0 1 60.0 8.000 0.0580 0 6 7.000 1 0.3 4 69 CAACCCTGGGAAGCAGGCAG CCCCCCTATCATCAACCCAG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44892185 44892185 G GC 98 4 42 49 1 3 G/+1 0.0408 2;2 31.5 1 40.8 1 60.0 8.000 0.0455 0 5 6.000 1 0.3 4 88 GCAAAGAGAAAGTACAAGGA CCCCCACATTTATAGGGGAC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44892260 44892260 G GTT 101 2 37 56 2 0 G/+2 0.0198 2;0 42.0 0 34.5 1 60.0 4.000 0.0220 0 6 8.000 1 2.1 2 91 GAACAGTTCCCTGAGAAGGG TTTTTTAGCTGAAACCCAAA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44957770 44957771 CT C 84 5 43 35 0 5 T/-1 0.0595 2;0 19.0 0 41.0 1 60.0 10.000 0.0735 0 0 5.000 1 0.2 5 68 AACCCAGCCCACCCACCTGC CCCTCCCTCGGGGGACATAT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44892225 44892225 G T 106 42 24 40 18 24 G/T 0.3962 2;2 35.9 1 38.6 1 60.0 20.000 0.3922 0.0094 0 1.000 1 1.6 40 102 CACTACCTCATTAGGGATGG TGGGGCAAGTTAGGGAACAG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44925012 44925013 GA G 80 3 30 47 0 3 A/-1 0.0375 2;0 52.0 0 42.0 0 24.0 6.000 0.0400 0 0 3.000 1 0 3 75 ATTTTACAGATGAGTAAACA GGCTCAGAAAGTCAAACACT 20:44885702-44969115 Deletion 0 0 @@ -35,25 +35,25 @@ NA24385_chr_20_44885701_44969115 testbed 20 44926636 44926636 A C 75 3 29 43 3 0 NA24385_chr_20_44885701_44969115 testbed 20 44959434 44959434 A C 90 90 0 0 54 36 C/C 1.0000 0;2 36.8 1 38.2 1 60.0 21.500 1.0000 0.0333 0 2.000 1 1.8 86 86 CCAGAGTTGGCCCTGGCAAT CCGGTTGTGTCGTGATAAGA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44926676 44926676 T A 87 4 37 45 4 0 T/A 0.0460 2;0 28.0 0 37.0 1 60.0 3.000 0.0375 0 0 1.000 1 1.2 3 80 CCCACTCTGCACCCATTTCC CAAAGTCACCTCTATAGATG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44893907 44893907 G A 50 18 18 14 10 8 G/A 0.3600 2;2 41.0 1 36.4 1 60.0 5.000 0.3409 0 1 3.000 1 1.2 15 44 GCCAAGCAGAGTCCCAGGAG CCCTTCTCCCTCCAAACCGC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44926590 44926590 T TC 94 2 40 47 0 2 T/+1 0.0213 2;0 63.7 0 43.1 0 61.6 4.000 0.0308 0 5 6.000 1 0.5 2 65 TTCGTCCTCTGCTCCACCAC CCCCCTACCCACCTCTTCTC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44926590 44926590 T TC 94 2 40 47 0 2 T/+1 0.0213 2;0 62.0 0 42.0 0 60.0 4.000 0.0308 0 5 6.000 1 0.5 2 65 TTCGTCCTCTGCTCCACCAC CCCCCTACCCACCTCTTCTC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44894087 44894088 CA C 68 4 33 31 2 2 A/-1 0.0588 2;2 41.8 1 39.5 1 60.0 8.000 0.0625 0 3 4.000 1 0.5 4 64 CCATGAATCCACACTTTGAG AAATACTGAAAATAGCCCCC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44926877 44926877 A G 100 100 0 0 43 57 G/G 1.0000 0;2 32.5 1 40.9 1 60.0 99.000 1.0000 0.0500 0 2.000 1 1.6 99 99 TACAGGCCACTGTTCATTCC TTCTTCTTCACTTTGGATAC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44926866 44926867 CT C 98 2 44 52 0 2 T/-1 0.0204 2;0 42.0 0 42.0 0 60.0 4.000 0.0206 0 0 1.000 1 1.5 2 97 AAAGGCTCATCTACAGGCCA GTTCATTCCATTCTTCTTCA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44893961 44893961 T TCTTTCTCTACTTTTCATAATTAATTAAAATTGTACAATTCAGCCTTGATAATGAAAGCTGCACAAATCATACATGCATAGTTTAACGAAAAGTCATAAAATGAACCCATGAATCCACACTTTGAGCAAAATACTGAAAATAGCCCCCTCCTCAGAAGCTCCTACTGTGTGTCCC 69 4 41 28 2 2 T/+174 0.0580 2;2 10.5 1 38.2 1 60.0 8.000 0.0606 0.0580 70 4.000 1 0.5 4 66 TTTTCCCCTCTTCCTCCTCC CTTTCTCTACTTTTCATAAT 20:44885702-44969115 Insertion 0 4-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44926724 44926724 T TCAGATCGGTACTTCAGACACCTGTAATGATCTATAAGGTTGTCCTCCCTCACAGCCAACCTCAATCTGTCTAGCTGCAAGTGCAGCCAATTTCTTCTGTTCTGTCCTGGAAATAGAAAAAAAAAGGCTCATCTACAGGCCACTGTTCATTCCATTCTTCTTCACTTTGGATACATAAAGTCTCCTCTCAAACTTCTCTCTTCTAGGTAAAATCATTCTGGTTCTTTTCCTTGGCTTTTCTAATCATTATCTTTAGTATCAGGTATCTTCAAATGCTGTGTTAAGGTTTTATCAGAGCCTGGCACATAGTAGGCTCACAAGAAATGTATCTTGGATGGATGGAGAAGTTGGTAGATTCTGAGGGTGAATGAGGGTGGAGAGACAGGTAGTAAGAAGACGGAAAGA 117 4 40 35 4 0 T/+404 0.0342 2;0 80.4 1 45.5 1 72.0 8.000 0.0519 0.0342 31 1.000 1 0 4 77 CCTACAGCCCAAATGCATTA CAGATCGGTACTTCAGACAC 20:44885702-44969115 Insertion 0 4-0-0 +NA24385_chr_20_44885701_44969115 testbed 20 44926724 44926724 T TCAGATCGGTACTTCAGACACCTGTAATGATCTATAAGGTTGTCCTCCCTCACAGCCAACCTCAATCTGTCTAGCTGCAAGTGCAGCCAATTTCTTCTGTTCTGTCCTGGAAATAGAAAAAAAAAGGCTCATCTACAGGCCACTGTTCATTCCATTCTTCTTCACTTTGGATACATAAAGTCTCCTCTCAAACTTCTCTCTTCTAGGTAAAATCATTCTGGTTCTTTTCCTTGGCTTTTCTAATCATTATCTTTAGTATCAGGTATCTTCAAATGCTGTGTTAAGGTTTTATCAGAGCCTGGCACATAGTAGGCTCACAAGAAATGTATCTTGGATGGATGGAGAAGTTGGTAGATTCTGAGGGTGAATGAGGGTGGAGAGACAGGTAGTAAGAAGACGGAAAGA 117 4 40 35 4 0 T/+404 0.0342 2;0 67.0 1 38.0 1 60.0 8.000 0.0519 0.0342 31 1.000 1 0 4 77 CCTACAGCCCAAATGCATTA CAGATCGGTACTTCAGACAC 20:44885702-44969115 Insertion 0 4-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44926827 44926827 G A 112 3 44 64 3 0 G/A 0.0268 2;0 22.0 1 42.0 0 60.0 6.000 0.0297 0 0 2.000 5 1.3 3 101 CAGCCAATTTCTTCTGTTCT TCCTGGAAATAGAAAAAAAA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44926839 44926840 GA G 102 4 45 53 0 4 A/-1 0.0392 2;0 49.5 1 39.5 1 60.0 8.000 0.0412 0 8 9.000 1 2.2 4 97 TCTGTTCTGTCCTGGAAATA AAAAAAAAGGCTCATCTACA 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44926839 44926839 G GA 103 9 38 46 2 7 G/+1 0.0874 2;2 43.7 1 42.7 1 63.2 18.000 0.1000 0.0097 9 10.000 1 3.2 9 90 TCTGTTCTGTCCTGGAAATA AAAAAAAAAGGCTCATCTAC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44926839 44926839 G GA 103 9 38 46 2 7 G/+1 0.0874 2;2 41.4 1 40.5 1 60.0 18.000 0.1000 0.0097 9 10.000 1 3.2 9 90 TCTGTTCTGTCCTGGAAATA AAAAAAAAAGGCTCATCTAC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44894028 44894032 TCATA T 74 4 42 28 2 2 C/-4 0.0541 2;2 55.5 1 42.0 0 60.0 8.000 0.0548 0 3 1.000 1 0.5 4 73 GATAATGAAAGCTGCACAAA CATGCATAGTTTAACGAAAA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44926811 44926811 C T 112 4 51 56 4 0 C/T 0.0357 2;0 7.0 0 42.0 0 60.0 8.000 0.0392 0 1 2.000 1 2.0 4 102 TGTCTAGCTGCAAGTGCAGC AATTTCTTCTGTTCTGTCCT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44926118 44926118 T G 66 2 33 31 0 2 T/G 0.0303 2;0 31.5 1 37.0 0 60.0 4.000 0.0345 0 1 2.000 2 4.0 2 58 CACAGGGGGTGCAGGAGCTC GTGGAGATTCTGGGGAATTG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44926101 44926101 A AG 65 3 32 30 3 0 A/+1 0.0462 2;0 44.8 1 43.1 0 61.6 6.000 0.0508 0 5 6.000 1 0.7 3 59 TGGAGGGTTAGAGCTTTCAC GGGGGTGCAGGAGCTCTGTG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44926101 44926101 A AG 65 3 32 30 3 0 A/+1 0.0462 2;0 43.7 1 42.0 0 60.0 6.000 0.0508 0 5 6.000 1 0.7 3 59 TGGAGGGTTAGAGCTTTCAC GGGGGTGCAGGAGCTCTGTG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44958974 44958974 C CGTGGGCGCCAGCCCAGGGTTCTGCCCTGGCCATCAGGGTCCTTCCCGGGCCCTGCAGAGGCGCCAAGGTGGGAGCTGGAGAGGGGCCAACAGAGAGGAGATGACACCAACCTGGCTGGCCAAAGCTCTGGCCTGGCGGGTGTGGGGTGGTGGGGAATTCCACGGGGAGGGTGGCACCCCCTGTCTACTGAATTCCTGAGTGGCCCCCTCTGTGGCCCCATCCCTGCCCTGCCTTTGGCATTTTGCCAAACCTGCCCTTGCCTCCTGGTGCCCCAATCTCTGCCTCAGTCTCTGAGCACCCCCACTGCCCCCTCTACTTGCTCTGTCCTGCATCGCTGTCTCTGGGTCTCTCCCTGTCATGGGGGATGGGGCTAGGGAGGGAGCAGGAAGCAGAGGGAAGAGGTATTGAGGGGGCATGGAGTGGGGGAGCAATTCAATTTCCAGAGTTGGCCCTGGCAATCCCGGTTGTGTCGTG 95 2 37 23 2 0 C/+474 0.0211 2;0 20.5 1 41.1 1 60.0 4.000 0.0339 0.0211 70 3.000 1 1.0 2 59 TGGGACTACATCCAAGCACC GTGGGCGCCAGCCCAGGGTT 20:44885702-44969115 Insertion 0 2-6-2 NA24385_chr_20_44885701_44969115 testbed 20 44958975 44958975 G C 63 2 39 22 1 1 G/C 0.0317 2;2 5.0 1 38.9 1 60.0 4.000 0.0328 0.0159 2 1.000 1 0.5 2 61 GGGACTACATCCAAGCACCC TGGGCGCCAGCCCAGGGTTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44926203 44926203 C T 60 2 31 26 1 1 C/T 0.0333 2;2 38.0 1 36.2 1 60.0 4.000 0.0370 0.0167 0 1.000 1 2.5 2 54 GGACTCCAAGAAGAGACGGG GCTCTGTGGGAGGTGGGGAT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44893392 44893392 C T 100 3 47 50 0 3 C/T 0.0300 2;0 8.0 0 42.0 0 60.0 6.000 0.0316 0 0 3.000 1 2.3 3 95 GCTACTTGACGTGACTTAAC CAGGCCTGAGTCCCTCCTTA 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44958816 44958816 G GC 56 4 22 29 1 3 G/+1 0.0714 2;2 41.1 1 42.4 1 62.4 8.000 0.0769 0 7 8.000 1 0 4 52 GCTGGAGGCAGGTGGGCTGG CCCCCCCTCTGCCCCTCCCT 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44926069 44926069 T TG 59 2 28 26 2 0 T/+1 0.0339 2;0 68.2 0 40.8 1 62.0 4.000 0.0526 0 6 7.000 1 1.0 2 38 GGATGGGTCTCCAGGAAGGG GGGGGGCTCCGTGGAGGGTT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44958816 44958816 G GC 56 4 22 29 1 3 G/+1 0.0714 2;2 39.5 1 40.8 1 60.0 8.000 0.0769 0 7 8.000 1 0 4 52 GCTGGAGGCAGGTGGGCTGG CCCCCCCTCTGCCCCTCCCT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44926069 44926069 T TG 59 2 28 26 2 0 T/+1 0.0339 2;0 66.0 0 39.5 1 60.0 4.000 0.0526 0 6 7.000 1 1.0 2 38 GGATGGGTCTCCAGGAAGGG GGGGGGCTCCGTGGAGGGTT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44893258 44893258 C CA 76 2 51 22 0 2 C/+1 0.0263 2;0 24.0 0 39.5 1 60.0 4.000 0.0282 0 3 4.000 1 0 2 71 TTAGTGGAGGATCTGGAATT AAACAGGCTCTGGCAGTGGG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44893605 44893605 A G 92 2 38 51 1 1 A/G 0.0217 2;2 34.0 1 42.0 0 60.0 4.000 0.0235 0 1 4.000 1 1.0 2 85 CTAGCACTGCTCACCTGCCC GGGGCAACCTGTTAGAACCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44893625 44893625 C A 99 2 36 61 1 1 C/A 0.0202 2;2 19.0 1 39.5 1 60.0 4.000 0.0208 0.0101 0 1.000 1 2.0 2 96 AGGGGCAACCTGTTAGAACC TCCACCTCAGGTGCCCCTGG 20:44885702-44969115 SNV 0 0 @@ -92,7 +92,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44927896 44927897 TC T 99 2 58 39 2 NA24385_chr_20_44885701_44969115 testbed 20 44895206 44895206 G T 85 3 43 39 3 0 G/T 0.0353 2;0 34.7 1 26.7 1 60.0 2.000 0.0253 0 1 2.000 3 2.7 2 79 CTCTGTCTTGGAGCTGCTTT ATGATGCACATATTCGGGAT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44895177 44895178 TA T 93 3 52 38 0 3 A/-1 0.0323 2;0 48.0 0 42.0 0 60.0 6.000 0.0349 0 0 2.000 1 0 3 86 CATTTCATTCCAGTCTCCCT GCCCCTTCTCTGTCTTGGAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44927972 44927980 ACGAAGCCT CACGAAGCCTC 95 2 41 52 0 2 C/-14iCCCCCCACGAAGCCTC 0.0211 2;0 7.0 1 31.3 1 30.0 4.000 0.0222 0.0105 6 1.000 1 0.5 2 90 GCTCAAATACTGCCTCCCCC CCCCCAGTGCCTTCGACCAG 20:44885702-44969115 Complex 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44960562 44960562 G GT 56 2 34 20 2 0 G/+1 0.0357 2;0 20.5 0 43.1 0 61.6 4.000 0.0392 0 5 6.000 1 0 2 51 AGTTTTCTTTGTTTGTTTTG TTTTTCCTTTTTGTTTTATT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44960562 44960562 G GT 56 2 34 20 2 0 G/+1 0.0357 2;0 20.0 0 42.0 0 60.0 4.000 0.0392 0 5 6.000 1 0 2 51 AGTTTTCTTTGTTTGTTTTG TTTTTCCTTTTTGTTTTATT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44927845 44927845 C T 95 2 58 35 2 0 C/T 0.0211 2;0 35.0 0 37.0 0 60.0 4.000 0.0213 0 1 2.000 1 2.5 2 94 TGCCCTGGTCAACGGGGCAA CAGCTGACACCGAAGCCTTT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44895075 44895075 G A 83 41 23 19 19 22 G/A 0.4940 2;2 35.9 1 37.2 1 60.0 7.200 0.4675 0 0 2.000 1 1.7 36 77 TGTCTCACCAAGGCAGAGAA GACCTGCAGGCTGGTGTGTG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44960575 44960576 GT G 53 3 32 17 3 0 T/-1 0.0566 2;0 20.3 1 42.0 0 60.0 6.000 0.0600 0 3 4.000 1 1.3 3 50 TGTTTTGGTTTTTCCTTTTT TTTATTGAGACAAGGTGTTG 20:44885702-44969115 Deletion 0 0 @@ -102,21 +102,21 @@ NA24385_chr_20_44885701_44969115 testbed 20 44959996 44959996 T C 57 22 14 20 11 NA24385_chr_20_44885701_44969115 testbed 20 44927224 44927225 GA G 127 3 49 73 1 2 A/-1 0.0236 2;2 16.0 1 42.0 0 60.0 6.000 0.0309 0 0 4.000 1 0 3 97 GGCAGATGGATGTTTAAATG GGTGGGTGGGCTGGAGGATG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44894457 44894483 CCTTCCCTTCCACCTTCTTCTCTTCTT C 95 4 57 34 2 2 C/-26 0.0421 2;2 30.5 1 33.6 1 60.0 8.000 0.0449 0.0211 5 3.000 3 1.0 4 89 TCCCCTTTTCTCCCACTTTT CTTCCTACTTCTCTTCCTGT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44959943 44959944 GA G 51 2 25 24 1 1 A/-1 0.0392 2;2 63.0 1 42.0 0 60.0 4.000 0.0465 0 0 6.000 1 1.0 2 43 GGTCGGGGGAGTAGGGGAAG GGGGAAGGAGACAGGCAGGG 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44894422 44894422 C CT 90 3 59 27 2 1 C/+1 0.0333 2;2 53.4 1 43.1 0 61.6 6.000 0.0353 0 5 6.000 1 1.0 3 85 AAATCCATTCATCCATTCTC TTTTTCTTCTTCTTTCCCCT 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44894254 44894254 G GT 84 2 45 36 2 0 G/+1 0.0238 2;0 27.2 1 43.1 0 61.6 4.000 0.0256 0 5 6.000 1 1.0 2 78 ATCTTAGTTTAGTCTTGCTT TTTTTGAGCTTGTATATCAT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44894422 44894422 C CT 90 3 59 27 2 1 C/+1 0.0333 2;2 52.0 1 42.0 0 60.0 6.000 0.0353 0 5 6.000 1 1.0 3 85 AAATCCATTCATCCATTCTC TTTTTCTTCTTCTTTCCCCT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44894254 44894254 G GT 84 2 45 36 2 0 G/+1 0.0238 2;0 26.5 1 42.0 0 60.0 4.000 0.0256 0 5 6.000 1 1.0 2 78 ATCTTAGTTTAGTCTTGCTT TTTTTGAGCTTGTATATCAT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44959785 44959831 AAAGTGAGGCTCAAAGTGGTTCAGTGATTTGCCCGAAGCTACACAGC A 59 2 37 19 2 0 A/-46 0.0339 2;0 85.0 1 34.8 1 60.0 4.000 0.0357 0.0339 5 3.000 1 0 2 56 CTCCCATTTTACAGATGGGG AAGTGCGTGTAGAGAGAAGC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44927036 44927036 G GCTCACAAGAAATGTATCTTGGATGGATGGAGAAGTTGGTAGATTCTGAGGGTGAATGAGGGTGGAGAGACAGGTAGTAAGAAGACGGAAAGAAAGGTGGTGATACACGTGTAGGTAAATAACGGGTTGGTGGATAGATGGGTGGAGGTGGGTGAGGGGTGAACTGCAGGCAGATGGATGTTTAAATGGAGGTGGGTGGGCTGGAGGATGATGGATTGGATAAATGGATGGATTGATGAATGGGTGGATGGATGGATGGATGGATGGGTGGGTGGATGGATGAGTGGATGGATGGCTGGCTTAGATGGGATGCTGGCTGGATGAATAATCTCAGCTGGCATCTCAATTTTCCCCTGC 134 2 81 52 0 2 G/+356 0.0149 2;0 62.0 1 41.4 1 60.0 4.000 0.0153 0.0149 70 2.000 1 0.5 2 131 CAGAGCCTGGCACATAGTAG CTCACAAGAAATGTATCTTG 20:44885702-44969115 Insertion 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44959794 44959795 CT C 53 3 31 16 3 0 T/-1 0.0566 2;0 53.0 0 42.0 0 60.0 6.000 0.0612 0 0 2.000 1 0.3 3 49 TACAGATGGGGAAAGTGAGG CAAAGTGGTTCAGTGATTTG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44927006 44927006 A T 138 2 86 50 1 1 A/T 0.0145 2;2 26.5 1 42.0 0 60.0 4.000 0.0153 0 0 2.000 1 1.0 2 131 GTATCTTCAAATGCTGTGTT AGGTTTTATCAGAGCCTGGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44927054 44927283 TTGGATGGATGGAGAAGTTGGTAGATTCTGAGGGTGAATGAGGGTGGAGAGACAGGTAGTAAGAAGACGGAAAGAAAGGTGGTGATACACGTGTAGGTAAATAACGGGTTGGTGGATAGATGGGTGGAGGTGGGTGAGGGGTGAACTGCAGGCAGATGGATGTTTAAATGGAGGTGGGTGGGCTGGAGGATGATGGATTGGATAAATGGATGGATTGATGAATGGGTGGA T 132 5 78 52 0 5 T/-229 0.0379 2;0 18.4 1 40.0 1 60.0 10.000 0.0403 0.0379 12 5.000 4 0.4 5 124 AGGCTCACAAGAAATGTATC TGGATGGATGGATGGATGGG 20:44885702-44969115 Deletion 0 3-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44894644 44894644 T TG 84 4 33 46 0 4 T/+1 0.0476 2;0 21.3 1 43.1 0 61.6 8.000 0.0533 0 5 6.000 1 1.0 4 75 CCTCCATCCTACTGAACTAC GGGGGCCCAGATGCCCCCTC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44894644 44894644 T TG 84 4 33 46 0 4 T/+1 0.0476 2;0 20.8 1 42.0 0 60.0 8.000 0.0533 0 5 6.000 1 1.0 4 75 CCTCCATCCTACTGAACTAC GGGGGCCCAGATGCCCCCTC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44960235 44960236 GA AC 50 16 15 16 10 6 GA/AC 0.3200 2;2 32.7 1 38.8 1 60.0 15.000 0.3333 0.0600 0 1.000 1 2.0 15 45 GACACCTACACCTGAGTCCT CATCAAAGGGGTTTCTCGCC 20:44885702-44969115 Complex 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44894668 44894670 GTC G 70 5 29 32 2 3 T/-2 0.0714 2;2 35.2 1 41.0 1 60.0 10.000 0.0781 0 16 9.000 2 0.6 5 64 GGCCCAGATGCCCCCTCTGG TCTCTCTCTCTCTCTCCCTA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44894669 44894669 T C 70 3 29 32 3 0 T/C 0.0429 2;0 15.0 1 30.3 1 60.0 2.000 0.0312 0 0 9.000 2 3.0 2 64 GCCCAGATGCCCCCTCTGGG CTCTCTCTCTCTCTCTCCCT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44894664 44894668 CTGGG C 73 2 35 35 1 1 T/-4 0.0274 2;2 49.5 1 42.0 0 60.0 4.000 0.0312 0 1 10.000 2 1.0 2 64 TGGGGGCCCAGATGCCCCCT TCTCTCTCTCTCTCTCTCCC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44960213 44960213 G A 46 3 22 21 3 0 G/A 0.0652 2;0 28.0 0 42.0 0 60.0 6.000 0.0714 0 0 2.000 2 3.0 3 42 GGAACACGGGAATCCTCTAC AGACACCTACACCTGAGTCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44927277 44927277 G A 131 3 55 72 1 2 G/A 0.0229 2;2 14.3 1 31.7 1 18.3 2.000 0.0159 0 0 3.000 1 3.0 2 126 AAATGGATGGATTGATGAAT GGTGGATGGATGGATGGATG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44927279 44927279 G GTGGATGGATGGATGGATGGATGGGTGGGGATTGATGAATGGGTGGATGGATGGATGGATGGATGGGTGGGTGGA 142 2 49 64 0 2 G/+74 0.0141 2;0 77.3 1 44.0 1 35.4 4.000 0.0183 0.0141 28 6.000 4 0 2 109 ATGGATGGATTGATGAATGG TGGATGGATGGATGGATGGA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44927279 44927279 G GTGGATGGATGGATGGATGGATGGGTGGGGATTGATGAATGGGTGGATGGATGGATGGATGGATGGGTGGGTGGA 142 2 49 64 0 2 G/+74 0.0141 2;0 65.5 1 37.3 1 30.0 4.000 0.0183 0.0141 28 6.000 4 0 2 109 ATGGATGGATTGATGAATGG TGGATGGATGGATGGATGGA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44927273 44927273 G A 122 2 51 69 1 1 G/A 0.0164 2;2 14.0 0 39.5 1 18.0 4.000 0.0172 0 3 2.000 1 3.5 2 116 GGATAAATGGATGGATTGAT AATGGGTGGATGGATGGATG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44894525 44894525 C T 132 2 58 72 2 0 C/T 0.0152 2;0 44.0 0 42.0 0 60.0 4.000 0.0157 0 0 5.000 1 2.5 2 127 CCACCTCCTGGTTGCCTGCC CCTGTTGTTCTATTGTTTTG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44927289 44927289 G T 165 2 69 92 1 1 G/T 0.0121 2;2 59.5 1 33.8 1 9.0 4.000 0.0128 0.0061 10 5.000 4 0.5 2 156 TGATGAATGGGTGGATGGAT GATGGATGGATGGGTGGGTG 20:44885702-44969115 SNV 0 0 @@ -125,7 +125,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44927343 44927343 G A 90 3 39 48 0 3 NA24385_chr_20_44885701_44969115 testbed 20 44894574 44894574 T TTCACACAGATACACACACACACACACACACACACACATTGATCCCAGCTCCTCCATCCTACTGAACTACTGGGGGCCCAGATGCCCCCTCTGGGTCTCTCTCTCTCTCTCTCCCTACCCAGATTTTGGGTATGTGGCTCCAGCCAGAGGGAGGCTCTCTGTGGACCTGAGTCTATTAAAGTTTATCTGTTTTAGAGGATTCCTGGGGCAGAGACTGGGGGAATGGTACAGCAGGGTCCTTTGTCCTCACACATCCTGTCTCTACTGTAGCAGCCTTGGGGAGAAGGCCTCTCTTCCCACTCTCACCTACTCTGGGCTGGGGTGGGAACTGAGGTGGCCCCAGGTGGCCTTATGGCTGTCCGTAGGATGCACAGCTGTGCAGGGAGAGAGGACTGGGACCTGGGTCATTCAGGGGCCAAGCCTCAGCCTCAGCTCTGCTCATTGAAGGTCTTGTGGAGCACCCGTCCTGTGCCTAGCATTGTGTCTCACCAAGGCAGAGAAGGACCTGCAGGCTGGTGTGTGTC 119 2 47 70 0 2 T/+523 0.0168 2;0 23.0 1 38.2 1 60.0 4.000 0.0202 0.0168 70 2.000 2 0 2 99 ATCTGGGAGCTGTGCACACA TCACACAGATACACACACAC 20:44885702-44969115 Insertion 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44894565 44894565 G A 121 73 20 27 31 42 G/A 0.6033 2;2 34.8 1 37.0 1 60.0 9.429 0.5893 0.0165 0 1.000 1 1.7 66 112 GTCTGCTACATCTGGGAGCT TGCACACATTCACACAGATA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44894584 44894588 TACAC T 107 38 23 34 15 23 A/-4 0.3551 2;2 43.4 1 40.7 1 60.0 76.000 0.3725 0 23 13.000 2 1.6 38 102 TGTGCACACATTCACACAGA ACACACACACACACACACAC 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44960074 44960074 A AG 63 2 24 36 2 0 A/+1 0.0317 2;0 16.4 0 43.1 0 61.6 4.000 0.0392 0 5 6.000 1 0.5 2 51 GATTTTAGTGCTGTCTGGGC GGGGGTCTGTGGGATACAGA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44960074 44960074 A AG 63 2 24 36 2 0 A/+1 0.0317 2;0 16.0 0 42.0 0 60.0 4.000 0.0392 0 5 6.000 1 0.5 2 51 GATTTTAGTGCTGTCTGGGC GGGGGTCTGTGGGATACAGA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44894552 44894552 A T 125 3 51 70 2 1 A/T 0.0240 2;2 41.7 1 42.0 0 60.0 6.000 0.0265 0 0 1.000 1 2.7 3 113 GTTCTATTGTTTTGTCTGCT CATCTGGGAGCTGTGCACAC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44927323 44927323 A G 125 4 52 69 0 4 A/G 0.0320 2;0 6.2 1 37.0 1 20.5 3.000 0.0263 0.0080 6 2.000 4 3.2 3 114 GTGGGTGGATGGATGAGTGG TGGATGGCTGGCTTAGATGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44927315 44927315 A G 162 2 67 92 1 1 A/G 0.0123 2;2 12.0 1 42.0 0 9.5 4.000 0.0139 0 1 2.000 4 2.0 2 144 ATGGATGGGTGGGTGGATGG TGAGTGGATGGATGGCTGGC 20:44885702-44969115 SNV 0 0 @@ -133,7 +133,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44895916 44895916 A C 86 3 30 53 1 2 NA24385_chr_20_44885701_44969115 testbed 20 44895908 44895908 G C 83 3 30 49 1 2 G/C 0.0361 2;2 8.0 0 40.3 1 60.0 6.000 0.0375 0 0 2.000 1 1.7 3 80 CTGGAGCAGGTGGTCCACAA TTGTGGAACAGAGATCAAGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44895886 44895887 CT C 84 2 33 49 2 0 T/-1 0.0238 2;0 30.0 0 42.0 0 60.0 4.000 0.0267 0 0 3.000 1 0 2 75 TCTGATGTTGGCCTGAGAGC CTGGAGCAGGTGGTCCACAA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44961427 44961427 T C 47 47 0 0 26 21 C/C 1.0000 0;2 32.1 1 40.7 1 60.0 94.000 1.0000 0.0638 0 3.000 3 1.6 47 47 CCCAATCCTCTGGCCTCTCC CCTCTAGCCCTCCTCCTGTA 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44895997 44895997 A ATG 68 2 24 41 0 2 A/+2 0.0294 2;0 38.2 0 43.4 0 62.0 4.000 0.0339 0 6 4.000 2 0 2 59 TCACAGTGATTCAACAAGGT TGTGTGAAGGGCTCATTCCC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44895997 44895997 A ATG 68 2 24 41 0 2 A/+2 0.0294 2;0 37.0 0 42.0 0 60.0 4.000 0.0339 0 6 4.000 2 0 2 59 TCACAGTGATTCAACAAGGT TGTGTGAAGGGCTCATTCCC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44895988 44895989 CA C 71 3 27 40 0 3 A/-1 0.0423 2;0 14.0 0 42.0 0 60.0 6.000 0.0484 0 1 2.000 1 0 3 62 TACATGTTTTCACAGTGATT ACAAGGTATGTGTGAAGGGC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44928704 44928705 TG T 81 2 41 38 2 0 G/-1 0.0247 2;0 18.0 0 42.0 0 60.0 4.000 0.0267 0 2 3.000 1 3.0 2 75 TCTGAGACACCATAGGGCCC GGCAAGTTCCAGCCTCTCCC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44928729 44928729 G T 76 75 0 0 45 30 T/T 0.9868 0;2 41.8 1 38.1 1 60.0 11.500 1.0000 0.0263 0 2.000 1 1.9 69 69 AAGTTCCAGCCTCTCCCTGG CCTCAGTTTCCCTTCTGTAT 20:44885702-44969115 SNV 0 0 @@ -143,7 +143,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44896003 44896004 GA G 68 2 25 40 0 NA24385_chr_20_44885701_44969115 testbed 20 44928788 44928788 A T 99 4 52 41 2 2 A/T 0.0404 2;2 13.0 1 39.5 1 60.0 8.000 0.0444 0 1 1.000 1 1.5 4 90 AGTCCCTAAAGGCCCTTTCA CTCCAAAATGCATAACCCTA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44961662 44962162 A 91 2 28 32 2 0 A/ 0.0220 2;0 36.0 1 41.3 1 60.0 4.000 0.0345 0.0220 0 2.000 2 0 2 58 CTCCACTCCTCTGAGCCTCT GCCAATCACAGGGGGCTTGA 20:44885702-44969115 INV 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44961659 44961659 T A 59 3 24 32 3 0 T/A 0.0508 2;0 8.0 1 31.7 1 60.0 2.000 0.0364 0.0339 0 1.000 1 2.0 2 55 TCACTCCACTCCTCTGAGCC CTAGGGGCTTGTTTAGAGGC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44928860 44928860 T TG 91 4 55 29 2 2 T/+1 0.0440 2;2 39.0 1 40.8 1 62.0 8.000 0.0506 0 6 7.000 1 0.3 4 79 GCCTTGGCAACCTCCTGGCC GGGGGGTGGGCTGCCTCTCC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44928860 44928860 T TG 91 4 55 29 2 2 T/+1 0.0440 2;2 37.8 1 39.5 1 60.0 8.000 0.0506 0 6 7.000 1 0.3 4 79 GCCTTGGCAACCTCCTGGCC GGGGGGTGGGCTGCCTCTCC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44960939 44960939 C A 62 62 0 0 31 31 A/A 1.0000 0;2 31.6 1 32.6 1 60.0 2.875 1.0000 0.0323 3 1.000 1 1.6 46 46 CCCTCTGCATCCCTACCCCC ACTGCTGACTCCAGAAGGCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44961014 44961329 C 69 3 28 37 2 1 C/ 0.0435 2;2 23.7 1 37.5 1 60.0 6.000 0.0476 0.0435 0 2.000 1 1.3 3 63 AGCCGGGCAGGATTGTTTAC ATGCGTCTTGTGGGGTAAGA 20:44885702-44969115 INV 0 3-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44928255 44928262 ATTAAAAT TTAA 72 2 32 37 2 0 A/-16iAAAAAAAATTAA 0.0278 2;0 39.5 1 40.8 1 31.5 4.000 0.0282 0 2 6.000 3 0 2 71 AGACTCCGTCTCAAAAAAAA AATAATAATAATAATAAGGG 20:44885702-44969115 Complex 0 0 @@ -165,7 +165,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44929775 44929776 TA T 90 3 43 44 3 NA24385_chr_20_44885701_44969115 testbed 20 44897010 44897012 ATC A 78 2 28 47 2 0 T/-2 0.0256 2;0 15.5 1 42.0 0 60.0 4.000 0.0294 0 2 2.000 2 0.5 2 68 CACCGCCTGCCTCGCAGCTC TCCCGCAGCTCCCCGAGGTC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44929757 44929757 A T 94 2 49 42 1 1 A/T 0.0213 2;2 34.0 1 39.5 1 60.0 4.000 0.0225 0 0 1.000 1 1.0 2 89 CAAGAAGGATATGCACTGAA TGGTAGCCAAGTGGTGGTAA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44929568 44929568 G C 78 3 34 40 0 3 G/C 0.0385 2;0 16.0 0 38.7 1 60.0 6.000 0.0417 0 1 1.000 1 4.0 3 72 GCTGGTTAAATGAATTATGG CAGCCACACAATGGAGAACC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44962357 44962357 G GA 70 4 29 37 3 1 G/+1 0.0571 2;2 31.6 1 38.6 1 61.6 8.000 0.0606 0.0143 5 6.000 1 1.8 4 66 TACAGTCTGATGGGCCTTTA AAAAACGGCTCTGCTTCACT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44962357 44962357 G GA 70 4 29 37 3 1 G/+1 0.0571 2;2 30.8 1 37.6 1 60.0 8.000 0.0606 0.0143 5 6.000 1 1.8 4 66 TACAGTCTGATGGGCCTTTA AAAAACGGCTCTGCTTCACT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44962430 44962430 A T 94 2 42 49 1 1 A/T 0.0213 2;2 21.5 1 42.0 0 60.0 4.000 0.0235 0 0 1.000 1 1.0 2 85 CTCTGAACCTCAGATTCTCC TCTGTAAAGTGGCAACAATA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44896846 44896846 G A 64 29 22 13 18 11 G/A 0.4531 2;2 40.1 1 40.1 1 60.0 58.000 0.4677 0 0 1.000 1 2.4 29 62 ACCTGCTAAAAACTCGGGCC ACCTCAGCCCTGGAAACAAT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44962372 44962372 T C 63 63 0 0 25 38 C/C 1.0000 0;2 38.7 1 39.7 1 60.0 30.500 1.0000 0.0159 0 2.000 1 1.6 61 61 CTTTAGAAAAACGGCTCTGC TCACTTGCTGTGTGACTGTG 20:44885702-44969115 SNV 0 0 @@ -186,7 +186,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44929816 44929816 G GTACATACATATATAC NA24385_chr_20_44885701_44969115 testbed 20 44929869 44929869 C T 66 3 32 31 0 3 C/T 0.0455 2;0 7.0 0 42.0 0 60.0 6.000 0.0484 0 0 6.000 2 1.0 3 62 CACACACACATACACACACA ACAGAGAGAGAATCACTCTG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44897115 44897115 T C 88 2 48 37 2 0 T/C 0.0227 2;0 7.0 0 42.0 0 60.0 4.000 0.0238 0 0 2.000 1 5.0 2 84 CTGGGGAGGCGTGGGCCTCC CCTTAAACAAGATTCAATTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44929162 44929162 C CACACTCCACCTCCCCAGCTCCCCTCCCCTACTCTGCAAGCACTACGGTGACAACAAAGAATATGGGGCGGGGCTTTCTGCTTTTTTGACTCGCAGAGGGGTCTGTGGTGTTAACATCTGGACCAACTTTCCAGAGGCCAAAACAGTTCTCTGCCATCCAGCATCCTTCCCTTCCCCAGGGACCCCCCAGTCCCCTCTTCGCTGGCCCCAAGGGGCTTCTACTTGAGGAATCTGGTGAGCGCCACACGACTCCTGCCAAAAACGTCCCAGTGGTCCCTGAAGAAATCATCGGACAAGAGCGTGAAGATGTGTGTACAAGGATGTTCATGGCAGAATTGTTTGTAATAGCGAAGGACTGGAAACAACCCAAATGTCCAACAGTGGGGGCTGGTTAAATGAATTATGGGCAGCCACACAATGGAGAACCATGCAGCTCTTGAAAAATGATGATGTAGATGTAT 99 3 46 53 1 2 C/+460 0.0303 2;2 32.7 1 35.0 1 60.0 6.000 0.0303 0.0303 70 5.000 2 0 3 99 CGTGCACACACACATACACA ACACTCCACCTCCCCAGCTC 20:44885702-44969115 Insertion 0 3-4-2 -NA24385_chr_20_44885701_44969115 testbed 20 44929156 44929156 T TAC 102 2 39 54 1 1 T/+2 0.0196 2;2 59.4 1 44.5 0 63.6 4.000 0.0225 0 10 6.000 2 0 2 89 CGTGCGCGTGCACACACACA ACACACACACTCCACCTCCC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44929156 44929156 T TAC 102 2 39 54 1 1 T/+2 0.0196 2;2 56.0 1 42.0 0 60.0 4.000 0.0225 0 10 6.000 2 0 2 89 CGTGCGCGTGCACACACACA ACACACACACTCCACCTCCC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44929264 44929266 CTG C 69 2 38 28 0 2 T/-2 0.0290 2;0 26.0 0 42.0 0 60.0 4.000 0.0303 0 2 2.000 2 1.0 2 66 TTTTTGACTCGCAGAGGGGT TGGTGTTAACATCTGGACCA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44929240 44929240 T A 82 2 53 27 2 0 T/A 0.0244 2;0 49.0 0 42.0 0 60.0 4.000 0.0253 0 0 1.000 1 1.0 2 79 GAATATGGGGCGGGGCTTTC GCTTTTTTGACTCGCAGAGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44961795 44961796 GC G 56 3 30 23 0 3 C/-1 0.0536 2;0 57.0 0 42.0 0 60.0 6.000 0.0612 0 2 3.000 1 0.3 3 49 GGGAGTGCCAGGCTTGCAGG CCAGGTTTGGCAGATGAGCC 20:44885702-44969115 Deletion 0 0 @@ -197,17 +197,17 @@ NA24385_chr_20_44885701_44969115 testbed 20 44929136 44929136 C T 136 2 47 87 0 NA24385_chr_20_44885701_44969115 testbed 20 44896345 44896346 CT C 64 2 31 31 0 2 T/-1 0.0312 2;0 44.0 0 42.0 0 60.0 4.000 0.0339 0 1 2.000 1 0 2 59 GTGTGACCTTGCATGATTTT TCCCTTCCTGCACCTCAGTC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44929111 44929111 C T 134 2 44 88 0 2 C/T 0.0149 2;0 60.0 0 42.0 0 60.0 4.000 0.0154 0 0 1.000 1 1.0 2 130 CTGGTGCCTGTCACTCTGCC ATCACACACACAAGCGCGCG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44896652 44897011 A 78 2 25 23 0 2 A/ 0.0256 2;0 21.0 1 41.8 1 60.0 4.000 0.0408 0.0256 0 2.000 1 0 2 49 CTGGAGCTGGGATGCTCCAA CTCCCGCAGCTCCCCGAGGT 20:44885702-44969115 INV 0 2-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44929418 44929418 C CA 103 2 44 55 2 0 C/+1 0.0194 2;0 54.4 1 43.1 0 61.6 4.000 0.0211 0 5 6.000 1 1.5 2 95 GAGCGCCACACGACTCCTGC AAAAACGTCCCAGTGGTCCC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44929418 44929418 C CA 103 2 44 55 2 0 C/+1 0.0194 2;0 53.0 1 42.0 0 60.0 4.000 0.0211 0 5 6.000 1 1.5 2 95 GAGCGCCACACGACTCCTGC AAAAACGTCCCAGTGGTCCC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44962200 44962201 CT A 82 2 48 32 0 2 CT/-1A 0.0244 2;0 64.0 0 39.5 1 60.0 4.000 0.0260 0 0 1.000 1 2.0 2 77 TGAACCACTCTGTGACTCAG TCCACATCTACCCCTGAGGG 20:44885702-44969115 Complex 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44896707 44896707 G A 65 3 30 32 3 0 G/A 0.0462 2;0 7.0 0 42.0 0 60.0 6.000 0.0476 0 0 3.000 1 1.0 3 63 CTACCAGATATTGGACATGG TTTCTGTCCCCTCACCCGCC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44929343 44929343 A AC 101 2 42 50 1 1 A/+1 0.0198 2;2 40.8 1 40.8 1 62.0 4.000 0.0317 0 6 7.000 1 3.6 2 63 CATCCTTCCCTTCCCCAGGG CCCCCCAGTCCCCTCTTCGC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44929343 44929343 A AC 101 2 42 50 1 1 A/+1 0.0198 2;2 39.5 1 39.5 1 60.0 4.000 0.0317 0 6 7.000 1 3.6 2 63 CATCCTTCCCTTCCCCAGGG CCCCCCAGTCCCCTCTTCGC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44896562 44896562 A G 58 30 11 17 14 16 A/G 0.5172 2;2 36.2 1 38.5 1 60.0 14.000 0.5185 0 0 2.000 1 1.6 28 54 GCAGGGGTGAGGGAAGCAGG CCACGTGGAGGGAGAAGTTG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44962172 44962172 A AG 89 2 50 33 1 1 A/+1 0.0225 2;2 63.7 1 43.1 0 61.6 4.000 0.0253 0 5 6.000 1 1.0 2 79 AAATAAGCCCTGCCAATCAC GGGGGCTTGAACCACTCTGT 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44963501 44963501 T TG 75 2 34 37 1 1 T/+1 0.0267 2;2 49.8 1 43.1 0 61.6 4.000 0.0294 0 5 6.000 1 1.0 2 68 TGCTTGGCTAAGGGGGCAAG GGGGGCTGAAATCCAGCCCA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44962172 44962172 A AG 89 2 50 33 1 1 A/+1 0.0225 2;2 62.0 1 42.0 0 60.0 4.000 0.0253 0 5 6.000 1 1.0 2 79 AAATAAGCCCTGCCAATCAC GGGGGCTTGAACCACTCTGT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44963501 44963501 T TG 75 2 34 37 1 1 T/+1 0.0267 2;2 48.5 1 42.0 0 60.0 4.000 0.0294 0 5 6.000 1 1.0 2 68 TGCTTGGCTAAGGGGGCAAG GGGGGCTGAAATCCAGCCCA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44930786 44930786 T A 75 3 31 41 3 0 T/A 0.0400 2;0 45.0 0 40.3 1 60.0 6.000 0.0417 0 0 1.000 1 1.0 3 72 GTGAGTGCAGCTTTGCACCA ATGCCACGCTAGACCCTAGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44898009 44898010 AT GC 60 33 10 15 15 18 AT/GC 0.5500 2;2 31.4 1 39.9 1 60.0 32.000 0.5926 0.0833 0 2.000 1 2.0 32 54 TTCTCTAGTGCACAGGGTGA TGACAGTGTGGGTCCCAAAT 20:44885702-44969115 Complex 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44897834 44898749 C 68 3 30 35 0 3 C/ 0.0441 2;0 49.0 1 41.9 1 60.0 6.000 0.0448 0.0441 0 3.000 1 0.3 3 67 GGCTGCCTGGGGTCTCCTTG AGTCTTGGAGGAAGGGCTAT 20:44885702-44969115 INV 0 3-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44963366 44963366 A AG 82 2 46 33 0 2 A/+1 0.0244 2;0 56.1 0 42.8 0 61.2 4.000 0.0263 0 4 5.000 1 0 2 76 CCAGCCTCAGCCCAGCACTG GGGGAGGGCGCCCCTCACGT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44963366 44963366 A AG 82 2 46 33 0 2 A/+1 0.0244 2;0 55.0 0 42.0 0 60.0 4.000 0.0263 0 4 5.000 1 0 2 76 CCAGCCTCAGCCCAGCACTG GGGGAGGGCGCCCCTCACGT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44897901 44914193 T 84 2 50 30 0 2 T/ 0.0238 2;0 43.0 1 42.0 1 60.0 4.000 0.0256 0.0238 0 0 0 1.5 2 78 CCTGCTCCAATTACCAGCCC ATAATTATCAAACCTAAGAT 20:44885702-44969115 INV 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44963439 44963439 G C 69 69 0 0 29 40 C/C 1.0000 0;2 31.8 1 40.7 1 60.0 68.000 1.0000 0.0145 0 3.000 1 1.6 68 68 ATGAGGAAAGGGCTAATAAG GTGGCCATGTACAGTTGCAC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44897890 44897890 A G 79 42 21 16 29 13 A/G 0.5316 2;2 26.0 1 41.6 1 60.0 84.000 0.5600 0.0127 0 2.000 1 1.6 42 75 TTCATTCCCATCCTGCTCCA TTACCAGCCCTGTCTCCATT 20:44885702-44969115 SNV 0 0 @@ -216,17 +216,17 @@ NA24385_chr_20_44885701_44969115 testbed 20 44930684 44930684 T TTGGGCCTTAGTCTTG NA24385_chr_20_44885701_44969115 testbed 20 44963395 44963396 CA C 73 3 32 38 0 3 A/-1 0.0411 2;0 20.0 0 42.0 0 60.0 6.000 0.0429 0 1 2.000 1 0.3 3 70 CGCCCCTCACGTGAAGTGGC AGGGTAGAATGAGTGAGGAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44930950 44930951 GT G 69 2 34 33 1 1 T/-1 0.0290 2;2 22.5 1 42.0 0 60.0 4.000 0.0303 0 2 3.000 1 0.5 2 66 TGTCTTGTGCGTTGTAGGCG TTGGCAGCATCCCTGGCCTC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44930974 44930974 C T 66 2 32 32 2 0 C/T 0.0303 2;0 18.0 0 42.0 0 60.0 4.000 0.0308 0 0 3.000 1 1.0 2 65 GGCAGCATCCCTGGCCTCTA CCATCAGATGACAGCAGCAG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44931050 44931050 T TG 56 5 22 29 3 2 T/+1 0.0893 2;2 32.9 1 43.4 0 62.0 10.000 0.1000 0 6 7.000 1 0.6 5 50 AGACATTGCCAAGAGTCCTC GGGGGGCAAAATTGCCCCCA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44931050 44931050 T TG 56 5 22 29 3 2 T/+1 0.0893 2;2 31.8 1 42.0 0 60.0 10.000 0.1000 0 6 7.000 1 0.6 5 50 AGACATTGCCAAGAGTCCTC GGGGGGCAAAATTGCCCCCA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44931039 44931039 C T 61 2 29 30 1 1 C/T 0.0328 2;2 23.5 1 37.0 1 60.0 4.000 0.0333 0 0 2.000 1 1.0 2 60 AAAATGTCTCGAGACATTGC AAGAGTCCTCTGGGGGGCAA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44898065 44898065 T TAGCTAACTTTTGTCAAGTGCTTGATAACCACCATTCTAAGCATTCACGAATGTAATCCATTTACTTCTCACATAACCCTATGAGGCAGATCCTATTTCTATTGCCATGTTGCCATGGAGACAAAGTGCAGAGAAGTGACTTGTCCAAGATCACACAGGCAGTCTGACGTCAGAGCCATGCTCCGAACCAGGGGCTCCCCACACCGTGCACCCTCTCTCCATTCCACGTGGCCCGTTGTGGGTGGTTGAGCAGACAGAGGATGCCAAGAGGAGCCAGCCTGCCAGGGACAAGTAAGGGCACCTGCTCTGCCAGGGAAACTGGCCTGTTGCTTTCATTCTTGGGCTGGGGGCCTGAGGTCAGCATTCTCCCTGCCCCAAGCCTACCCCCTGCGGATTTCCCCATCCACCTCCTCAGGGACTTCCAGCCTTGTGACTTCTTCCTACTGGACTGCAACCCTGGACCTCTGGAGGCAGGGGCTGAGGTCTGATTCATCTCCAAACCCCAGAGCCTCACCCAGGAACCAGTATGTAGTAGGTGCTCAAAAAAGACTTGTTTTTATCCAAGGGAGTCAGGTAGGCTTGCTGCAGCAGGAGACATTTGAACTGATCCTTGAAGGATAAGTAGGGGTTCGCCATATAGAGCAAAGGGGAAAGGAATTCCAGGCAGAGGGAAGAAGCTGAGCAAAGTCTTGG 61 2 22 30 1 1 T/+692 0.0328 2;2 35.0 1 40.9 1 60.0 4.000 0.0385 0.0328 70 2.000 1 1.0 2 52 ATAATAAATAGTACTGAGCA AGCTAACTTTTGTCAAGTGC 20:44885702-44969115 Insertion 0 2-2-1 -NA24385_chr_20_44885701_44969115 testbed 20 44930920 44930920 T TG 62 2 29 29 1 1 T/+1 0.0323 2;2 36.9 1 35.9 1 62.4 4.000 0.0370 0 7 8.000 1 0.5 2 54 CATGAGTCTTTGCAGTGGGG GGGGGGGACTGTCTTGTGCG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44930920 44930920 T TG 62 2 29 29 1 1 T/+1 0.0323 2;2 35.5 1 34.5 1 60.0 4.000 0.0370 0 7 8.000 1 0.5 2 54 CATGAGTCTTTGCAGTGGGG GGGGGGGACTGTCTTGTGCG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44963680 44963680 A T 71 8 27 35 5 3 A/T 0.1127 2;2 13.6 1 41.4 1 60.0 16.000 0.1212 0 0 2.000 1 3.4 8 66 GGCCACCTCTCTGAGAGAGG GGCCAGGCAGAATATCCTTA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44963706 44963706 C A 61 2 31 28 1 1 C/A 0.0328 2;2 9.0 1 42.0 0 60.0 4.000 0.0357 0 0 2.000 1 1.5 2 56 GGCAGAATATCCTTAAGGAT TTCTCATGTTAGCAACAGCA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44963672 44963672 G C 76 11 28 37 7 4 G/C 0.1447 2;2 12.1 1 39.2 1 60.0 10.000 0.1370 0 0 3.000 2 3.6 10 73 GTTGTCAGGGCCACCTCTCT AGAGAGGAGGCCAGGCAGAA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44963664 44963664 A T 74 8 29 37 4 4 A/T 0.1081 2;2 12.2 1 37.6 1 60.0 16.000 0.1143 0 0 2.000 1 3.8 8 70 CATAGCAGGTTGTCAGGGCC CCTCTCTGAGAGAGGAGGCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44897326 44897327 GA G 84 2 31 50 0 2 A/-1 0.0238 2;0 28.0 0 42.0 0 60.0 4.000 0.0270 0 0 5.000 1 0 2 74 TCTCCTAGGATGGGAGAGGG GAGGCCAGAGATGGCAGGAA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44897298 44897298 G A 89 44 19 26 18 26 G/A 0.4944 2;2 27.0 1 36.1 1 60.0 13.667 0.4824 0.0225 0 2.000 1 1.9 41 85 CCCCAGACTCCAGCACGGCC GCCGCTTTCTCCTAGGATGG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44930143 44930143 A AAT 61 3 23 30 1 2 A/+2 0.0492 2;2 36.2 1 40.2 1 65.2 6.000 0.0588 0.0164 14 8.000 2 0.4 3 51 TGTAACTTGCCTATTAAAAA ATATATATATATATGTATAT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44930143 44930143 A AAT 61 3 23 30 1 2 A/+2 0.0492 2;2 33.3 1 37.0 1 60.0 6.000 0.0588 0.0164 14 8.000 2 0.4 3 51 TGTAACTTGCCTATTAAAAA ATATATATATATATGTATAT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44930438 44930439 GA G 61 2 26 33 0 2 A/-1 0.0328 2;0 69.0 0 42.0 0 60.0 4.000 0.0339 0 2 3.000 1 0.5 2 59 CCAGCTTGGGCAACAAGAGT AACTCCGTCTCAAATATATA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44930541 44930541 C CTATACATGGCAATGTGCCCTCAACTTCTGGGCTCCTGGACAGGAGGTCCCCACCAGCGGGTGCATCCTTCTCTCCTCTCTAAGTGCCTGTGTATTAGCATGGTCCAGCTCTCTGGGGAGGGGCCAGGCAACCCTGG 81 3 41 20 1 2 C/+136 0.0370 2;2 29.7 1 41.0 1 60.0 6.000 0.0492 0.0370 70 2.000 1 0 3 61 GAAAGAATGAGGCTGGTGAA TATACATGGCAATGTGCCCT 20:44885702-44969115 Insertion 0 3-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44897778 44897778 C CTGCAAACTGATCTTTCATGGTTTGCCACCACAGCAGGCTGCCTGGGGTCTCCTTGCTGCTCAGTGTCCCGCTCTGCCCCAGGTCTTTCTTATTCATTCCCATCCTGCTCCAATTACCAGCCCTGTCTCCATTCCTATCACAGAATATCAAAGCTGGAAATCCATGACTCCTCATTTTCCTGATGGAGAGAGGCCCAGAGAGGGGATGCACTTCTCTAG 67 3 25 33 3 0 C/+218 0.0448 2;0 49.0 1 41.3 1 60.0 6.000 0.0500 0.0448 70 1.000 1 0 3 60 ATCTGGCTGCTAACTCTCTT TGCAAACTGATCTTTCATGG 20:44885702-44969115 Insertion 0 3-0-0 @@ -237,7 +237,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44897615 44897615 T C 54 21 16 17 12 NA24385_chr_20_44885701_44969115 testbed 20 44963148 44963149 TG T 75 2 31 42 2 0 G/-1 0.0267 2;0 21.0 0 42.0 0 60.0 4.000 0.0286 0 1 2.000 1 0 2 70 GCCAGCAGTTAAAGTCCCCC GTTGTCTAATTTAATCACAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44931747 44931748 CT C 73 2 28 43 1 1 T/-1 0.0274 2;2 20.5 1 42.0 0 60.0 4.000 0.0303 0 2 3.000 1 0 2 66 AGGCCAAGCTCCTTGTGTGG TTCAAGACCCACGGGACCTG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44899055 44899056 GA G 44 5 18 18 3 2 A/-1 0.1136 2;2 46.0 1 42.0 0 60.0 10.000 0.1351 0 0 6.000 1 0.8 5 37 GGCAGCACTGAGCCAGGCCT GGGGGCTTTTACTTTATCCC 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44899056 44899056 A AG 44 2 18 18 0 2 A/+1 0.0455 2;0 62.1 1 43.1 0 61.6 4.000 0.0541 0 5 6.000 1 1.0 2 37 GCAGCACTGAGCCAGGCCTG GGGGGCTTTTACTTTATCCC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44899056 44899056 A AG 44 2 18 18 0 2 A/+1 0.0455 2;0 60.5 1 42.0 0 60.0 4.000 0.0541 0 5 6.000 1 1.0 2 37 GCAGCACTGAGCCAGGCCTG GGGGGCTTTTACTTTATCCC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44899021 44899022 TG T 54 4 28 20 2 2 G/-1 0.0741 2;2 16.5 1 40.1 1 60.0 8.000 0.0769 0.0370 3 4.000 1 1.0 4 52 ACTGTGAGCAGGGCCCCATC GGGTGACAGATAGGCAGCAC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44899022 44899266 GGGGTGACAGATAGGCAGCACTGAGCCAGGCCTGAGGGGGCTTTTACTTTATCCCCTCTCCTGACAAGCGATAGAGCTGGCAGATAAGGCATCTTCTTCCTTAATCTCCGGTCTCGGGCTGGAACAAGAAAGGGGGGCGAGACTGGCACCTTGTTCAAGCCTGAATCCTCTTCTTCCTGAGTTTAAAGCTATGGATTCTAGTCATGGATTCTTCATGGGAATCCTTTCTCCAGGAGGCACTGCAG TTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCACGGGTCATTTCTTGATCGT 54 2 28 20 0 2 G/-245iTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCACGGGTCATTTCTTGATCGT 0.0370 2;0 60.0 1 38.3 1 60.0 4.000 0.0385 0.0370 1 2.000 1 3.0 2 52 CTGTGAGCAGGGCCCCATCT GTGTTGAAGGAAATGGAGTT 20:44885702-44969115 Complex 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44964573 44964614 AAGGACCAGATATGGTGGCTCACGCCTGTAATCCCAGCACTT CTGACCTCAGGTGATTCACCCGCCTTGGCCTCCCAAAGTGC 67 2 35 30 2 0 A/-42iCTGACCTCAGGTGATTCACCCGCCTTGGCCTCCCAAAGTGC 0.0299 2;0 31.5 1 41.6 1 45.5 4.000 0.0317 0.0299 0 3.000 1 0.5 2 63 TCTTTTGTCAAATGTAGATC TGGGAGGCCAAGGCGGGTGA 20:44885702-44969115 Complex 0 0 @@ -263,12 +263,12 @@ NA24385_chr_20_44885701_44969115 testbed 20 44898322 44898322 A G 84 47 27 10 22 NA24385_chr_20_44885701_44969115 testbed 20 44898410 44898410 G T 72 2 25 45 0 2 G/T 0.0278 2;0 6.0 0 42.0 0 60.0 4.000 0.0294 0 0 5.000 1 2.5 2 68 GTTGCTTTCATTCTTGGGCT GGGGCCTGAGGTCAGCATTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44963964 44963965 GT G 65 2 32 31 2 0 T/-1 0.0308 2;0 50.0 0 42.0 0 60.0 4.000 0.0312 0 1 2.000 1 1.0 2 64 TTTCAGAGAGCCTACAGTGT TCAGGAGCAGCAGACTTGCA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44963932 44963932 T TTCTGTAGAAATTTTCAGAGAGCCTACAGTGTGTTCAGGAGCAGCAGACTTGCAGGGAGGGGTGGAGATGGTGTAGCTTTTCCCAGTGCATTTGGCTGTGGAATCCTTCATTTTAGGACTCTTATTCATCCTGGGATCCTAGTGTCTATCTCTGGGCTTATTAGTGAGTGGATGTCATCCCCAAGGACAGAGAACGCTCCTATTCCTGGCCATAACTCTAGACTCAAGGCAC 84 4 38 27 2 2 T/+231 0.0476 2;2 24.0 1 38.3 1 60.0 8.000 0.0606 0.0476 70 3.000 1 0.2 4 66 CATCGAGTTAAGTGGTTTCT TCTGTAGAAATTTTCAGAGA 20:44885702-44969115 Insertion 0 4-1-1 -NA24385_chr_20_44885701_44969115 testbed 20 44931516 44931516 T TC 87 4 34 47 1 3 T/+1 0.0460 2;2 21.0 1 43.1 0 61.6 8.000 0.0563 0 5 6.000 1 0.5 4 71 AGGAATGGGAACTCCTTCTC CCCCCATGCCCAGGCAGTTA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44931516 44931516 T TC 87 4 34 47 1 3 T/+1 0.0460 2;2 20.5 1 42.0 0 60.0 8.000 0.0563 0 5 6.000 1 0.5 4 71 AGGAATGGGAACTCCTTCTC CCCCCATGCCCAGGCAGTTA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44964282 44964282 A G 79 2 33 43 1 1 A/G 0.0253 2;2 43.5 1 37.0 1 60.0 4.000 0.0270 0 0 2.000 1 3.5 2 74 AAGGAAAATCTAGCAAAAAT GGTCTCCCTTCAAATCGGTG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44964236 44964236 T C 92 92 0 0 43 49 C/C 1.0000 0;2 32.4 1 39.0 1 59.7 17.400 1.0000 0.0978 0 2.000 1 1.6 87 87 AAGATTGCGAGTGGGCAAGA TGCTAGATCTTGCCTTCCTT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44898707 44898708 CA C 66 5 33 28 0 5 A/-1 0.0758 2;0 27.8 1 42.0 0 60.0 10.000 0.0806 0 2 3.000 1 0.2 5 62 TAGGGGTTCGCCATATAGAG AAGGGGAAAGGAATTCCAGG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44964310 44964310 G T 79 2 33 44 0 2 G/T 0.0253 2;0 53.0 0 42.0 0 60.0 4.000 0.0270 0 0 6.000 1 1.0 2 74 CTTCAAATCGGTGAAGTGTG GGGGAGCATCCTGAGTCCAC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44964308 44964308 T TG 80 3 29 44 1 2 T/+1 0.0375 2;2 40.3 1 40.0 1 62.0 6.000 0.0441 0 6 7.000 1 1.0 3 68 CCCTTCAAATCGGTGAAGTG GGGGGGAGCATCCTGAGTCC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44964308 44964308 T TG 80 3 29 44 1 2 T/+1 0.0375 2;2 39.0 1 38.7 1 60.0 6.000 0.0441 0 6 7.000 1 1.0 3 68 CCCTTCAAATCGGTGAAGTG GGGGGGAGCATCCTGAGTCC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44964128 44964129 CT C 73 3 47 21 0 3 T/-1 0.0411 2;0 19.0 0 38.7 1 60.0 6.000 0.0448 0 0 3.000 1 1.7 3 67 ATCCCCAAGGACAGAGAACG CCTATTCCTGGCCATAACTC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44898567 44898567 C A 61 3 24 34 0 3 C/A 0.0492 2;0 33.0 0 42.0 0 60.0 6.000 0.0492 0 2 4.000 1 3.0 3 61 GTCTGATTCATCTCCAAACC CAGAGCCTCACCCAGGAACC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44898563 44898563 A T 60 31 12 17 12 19 A/T 0.5167 2;2 35.3 1 38.3 1 58.2 14.500 0.5179 0.0167 0 3.000 1 1.5 29 56 TGAGGTCTGATTCATCTCCA ACCCCAGAGCCTCACCCAGG 20:44885702-44969115 SNV 0 0 @@ -283,7 +283,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44965839 44965839 G T 55 2 28 23 2 0 NA24385_chr_20_44885701_44969115 testbed 20 44932876 44932877 AG T 75 2 35 37 0 2 AAG/-1AT 0.0267 2;0 48.0 0 42.0 0 60.0 4.000 0.0299 0 1 2.000 1 0 2 67 ATCATGTGCAAAACCAAACA GAGGAACTGCTGCATTTACC 20:44885702-44969115 Complex 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44932285 44932285 G T 114 4 71 38 2 2 G/T 0.0351 2;2 29.5 1 40.8 1 60.0 8.000 0.0364 0 2 3.000 1 1.0 4 110 GAAGAGGTGCTATTTGGGTT GGTCCTTAATGCTTTGGAAT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44899566 44899566 G T 84 2 45 37 0 2 G/T 0.0238 2;0 8.0 0 42.0 0 60.0 4.000 0.0260 0 0 3.000 1 2.0 2 77 TCATCTCTCTGAGCCTCAGT CCCTGTTCTGTGAAACAGGG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44899533 44899533 C CAGGCAGGCCACCTCATCTCTCTGAGCCTCAGTGCCCTGTTCTGTGAAACAGGGAACAGGAATCCCACGTTCGTTGTGAAGCTTGAATAGTTGATGAATATAAAAGTAATCCTCTGGAAAGAGTCAAGTGCTGTAACCAAGTGAGGTTTGATTATTATTCCCCACAGGCAAGAGTGGAGCAGTCATGAGAGTGGAAG 77 2 17 20 1 1 C/+196 0.0260 2;2 88.9 1 57.2 1 86.0 4.000 0.0556 0.0260 66 2.000 2 0 2 36 TGCTACCAAATGTGTGACCT AGGCAGGCCACCTCATCTCT 20:44885702-44969115 Insertion 0 2-7-2 +NA24385_chr_20_44885701_44969115 testbed 20 44899533 44899533 C CAGGCAGGCCACCTCATCTCTCTGAGCCTCAGTGCCCTGTTCTGTGAAACAGGGAACAGGAATCCCACGTTCGTTGTGAAGCTTGAATAGTTGATGAATATAAAAGTAATCCTCTGGAAAGAGTCAAGTGCTGTAACCAAGTGAGGTTTGATTATTATTCCCCACAGGCAAGAGTGGAGCAGTCATGAGAGTGGAAG 77 2 17 20 1 1 C/+196 0.0260 2;2 62.0 1 39.9 1 60.0 4.000 0.0556 0.0260 66 2.000 2 0 2 36 TGCTACCAAATGTGTGACCT AGGCAGGCCACCTCATCTCT 20:44885702-44969115 Insertion 0 2-7-2 NA24385_chr_20_44885701_44969115 testbed 20 44899373 44899373 T C 70 2 39 29 0 2 T/C 0.0286 2;0 6.0 0 42.0 0 60.0 4.000 0.0323 0 0 1.000 1 1.0 2 62 TTACCCCATGGATGGAACAG CTGGAACTCCAAGGAGAAGT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44932157 44932347 AATGCTTTATATGTAAATATATGTAAATGCTTTATATGTAAATATATATATATACATTTTAAACTGGATAATGAATGTATGGTCAGACAGGCAGATGGGTGATGCAAGGAAGAGGTGCTATTTGGGTTGGGTCCTTAATGCTTTGGAATATCTTCGGGGAAGGTTGTTCAGGTGGAAGGGCAGGTGGGGCT GGGAGATAAAGGA 75 2 33 42 2 0 AGGCAGGTGGGGCT/-178GGGAGATAAAGGA 0.0267 2;0 53.0 1 42.0 1 60.0 4.000 0.0270 0.0267 0 3.000 1 0 2 74 CACAATGCTTAACACATAGT GGATGCAGGAGTGTCAGATT 20:44885702-44969115 Complex 0 2-3-1 NA24385_chr_20_44885701_44969115 testbed 20 44932106 44932106 G A 66 2 28 35 1 1 G/A 0.0303 2;2 14.5 1 39.5 1 60.0 4.000 0.0308 0.0152 0 1.000 1 1.5 2 65 TGTCAGCTGGGATTCAGGCT CTTGCTCACCATTGTGTCTC 20:44885702-44969115 SNV 0 0 @@ -311,7 +311,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44966696 44966696 T TGGGCCTCCCTCTGAA NA24385_chr_20_44885701_44969115 testbed 20 44933926 44933927 GA G 66 2 26 36 0 2 A/-1 0.0303 2;0 25.0 0 34.5 1 60.0 4.000 0.0328 0 0 3.000 1 2.5 2 61 ATATCTAGGCTTTCTCTAGA GGCCAGAATCAAAACACAAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44966658 44966658 G A 46 45 0 0 21 24 A/A 0.9783 0;2 37.4 1 38.5 1 60.0 10.250 1.0000 0 0 2.000 1 1.5 41 41 GAGCAGGGAGTGGAGTGGCT CCGACATCCACAGCTGATGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44966678 44966678 C T 44 2 20 22 0 2 C/T 0.0455 2;0 50.0 0 42.0 0 60.0 4.000 0.0476 0 0 1.000 1 2.0 2 42 GCCGACATCCACAGCTGATG AGGGACTCGTGTGTGCCTGG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44933997 44933997 T TGAGGAACCCGGGGTGGAGGAACGTGGAATG 84 28 22 31 13 14 T/+30 0.3333 2;2 62.0 1 37.0 1 6.4 56.000 0.3590 0.2976 19 3.000 1 0.2 28 78 GCTCCATCTTAAAGGTGCTT GAGGAACCCGGGGTGGAGGG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44933997 44933997 T TGAGGAACCCGGGGTGGAGGAACGTGGAATG 84 28 22 31 13 14 T/+30 0.3333 2;2 56.1 1 33.5 1 5.8 56.000 0.3590 0.2976 19 3.000 1 0.2 28 78 GCTCCATCTTAAAGGTGCTT GAGGAACCCGGGGTGGAGGG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44966772 44966772 A T 41 2 16 22 2 0 A/T 0.0488 2;0 58.0 0 39.5 1 60.0 4.000 0.0541 0 1 1.000 1 1.5 2 37 CCCCAGTCACGCCACCTATT GCCTGGCTGCCCTGGGCACA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44933303 44933306 GGAA G 69 2 32 34 2 0 G/-3 0.0290 2;0 36.0 0 42.0 0 60.0 4.000 0.0303 0 4 5.000 1 0 2 66 GGCATGGAGGGAAATGTGGG GAAGGGAATTCCTCCAGGTT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44900505 44900505 A T 96 5 43 48 3 2 A/T 0.0521 2;2 32.4 1 40.0 1 60.0 10.000 0.0538 0 0 1.000 1 2.4 5 93 CTATAATGACTCCCAAGCTT GTATCCTCAGTCCTAACCTC 20:44885702-44969115 SNV 0 0 @@ -324,12 +324,12 @@ NA24385_chr_20_44885701_44969115 testbed 20 44900771 44900771 C G 76 36 20 20 23 NA24385_chr_20_44885701_44969115 testbed 20 44900847 44900847 T A 76 2 38 35 2 0 T/A 0.0263 2;0 48.0 0 42.0 0 60.0 4.000 0.0282 0 2 1.000 1 1.5 2 71 GTCCAGAAGTTTAAGATGAC CTTAGGTTTTTGGTTTAACA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44900810 44900812 ATC A 89 2 55 32 0 2 T/-2 0.0225 2;0 61.0 0 42.0 0 60.0 4.000 0.0233 0 2 2.000 2 0 2 86 GACCACTTCACATCATTTCC TCCATTCTAATTCCGTCCAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44900641 44900642 GT G 108 4 50 54 2 2 T/-1 0.0370 2;2 41.5 1 40.8 1 60.0 8.000 0.0388 0 3 4.000 1 0.8 4 103 AAAACTGACTCTTCTCTGGG TTTCCATCTTCGTGAATGAC 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44900669 44900669 A ATCTGTCAAGTGTTCCAGGCCAGAAGGCTGGAAGTCATGCTTGGCAGCTCTCATCCCTGCACCCCCAATGGGCAATCTATTAAGTCTGGTCCACTTTACCTTCTAAATAACTCTCTAAATTGACCACTTCACATCATTTCCATCTCCATTCTAATTCCGTCCAGAAGTTTAAGATGACTCTTAGGTTTTTGGTTTAACACTGGATGGTGGTGTGATACTTAC 107 7 36 41 6 1 A/+221 0.0654 2;2 35.7 1 37.9 1 66.5 14.000 0.0854 0.0561 45 1.000 1 0.7 7 82 TCTTCGTGAATGACACCCTC TCTGTCAAGTGTTCCAGGCC 20:44885702-44969115 Insertion 0 7-2-1 +NA24385_chr_20_44885701_44969115 testbed 20 44900669 44900669 A ATCTGTCAAGTGTTCCAGGCCAGAAGGCTGGAAGTCATGCTTGGCAGCTCTCATCCCTGCACCCCCAATGGGCAATCTATTAAGTCTGGTCCACTTTACCTTCTAAATAACTCTCTAAATTGACCACTTCACATCATTTCCATCTCCATTCTAATTCCGTCCAGAAGTTTAAGATGACTCTTAGGTTTTTGGTTTAACACTGGATGGTGGTGTGATACTTAC 107 7 36 41 6 1 A/+221 0.0654 2;2 28.9 1 30.7 1 53.9 14.000 0.0854 0.0561 45 1.000 1 0.7 7 82 TCTTCGTGAATGACACCCTC TCTGTCAAGTGTTCCAGGCC 20:44885702-44969115 Insertion 0 7-2-1 NA24385_chr_20_44885701_44969115 testbed 20 44900734 44900735 CA C 101 3 50 48 0 3 A/-1 0.0297 2;0 18.0 0 42.0 0 60.0 6.000 0.0312 0 1 5.000 1 2.3 3 96 ATCTCTCATCCCTGCACCCC ATGGGCAATCTATTAAGTCT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44933451 44933451 G GTAATTAAAGAAAGGGATCCTTTTCTGGGGGTAAGCAGCCCCATAGGCCCATGGCTGGTAAGTATATGAAGCCTTTTTGCAAATTAGAGAAAGATGCCCCCTCCTCCAGGCAGGCACAGCCTGTCTTTGGGGCACCTGACTTGGAGAGTGGAGCTTAAAATAGATTTCAGTCCCCGCTCTCCTCC 91 7 33 38 6 1 G/+184 0.0769 2;2 49.9 1 36.9 1 60.0 14.000 0.0909 0.0769 70 2.000 1 1.6 7 77 CCAGATGGGCCACCTTTGGA TAATTAAAGAAAGGGATCCT 20:44885702-44969115 Insertion 0 7-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44966226 44966226 G GA 35 4 16 14 0 4 G/+1 0.1143 2;0 8.5 1 40.2 1 63.6 8.000 0.1212 0.0857 10 11.000 1 0 4 33 GAGTGACACCCTGTCTCGAG AAAAAAAAAAGGAGACCAAG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44966226 44966226 G GA 35 4 16 14 0 4 G/+1 0.1143 2;0 8.0 1 37.9 1 60.0 8.000 0.1212 0.0857 10 11.000 1 0 4 33 GAGTGACACCCTGTCTCGAG AAAAAAAAAAGGAGACCAAG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44966226 44966227 GA G 37 3 15 19 2 1 A/-1 0.0811 2;2 29.0 1 40.8 1 60.0 6.000 0.0857 0.0270 9 10.000 1 1.7 3 35 GAGTGACACCCTGTCTCGAG AAAAAAAAAGGAGACCAAGG 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44902055 44902055 C CA 78 2 37 37 1 1 C/+1 0.0256 2;2 12.3 1 34.6 1 61.6 4.000 0.0274 0.0128 5 6.000 1 0 2 73 TTTAGCTGAAGAGTTGGCCC AAAAACCTAGTCTCCTGTTT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44902055 44902055 C CA 78 2 37 37 1 1 C/+1 0.0256 2;2 12.0 1 33.8 1 60.0 4.000 0.0274 0.0128 5 6.000 1 0 2 73 TTTAGCTGAAGAGTTGGCCC AAAAACCTAGTCTCCTGTTT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44902046 44902046 A G 72 39 19 14 17 22 A/G 0.5417 2;2 29.3 1 38.5 1 59.7 12.000 0.5294 0.0417 2 2.000 2 1.5 36 68 TTAGCCCTTTTTAGCTGAAG GTTGGCCCCAAAAACCTAGT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44967572 44967572 C CCAGGGCCAAGGGGTCCATGGCCCCAGATGCATTAACTCCTGGAGTGGAGATGGATGGGGAGGAGGGGCGGGTTTTTAGCTGGAGTGGTCAAGGAAGCCTCTCCGGGGAGGTGGTATTTGATCAGCAACATAAAGTGGGCAAAGGAGCTGCCATGCGAAGATTTGAGTCAAATTCATTGCAGGCAGAGGGAACAGCAAGTCTAAGGGCTCTGGGGTAAGAAGGAACAATGAGGCCAAGGTGGCTGGAACAAAGTGACCAGCGAAGGGAGAAGACAGAGAGGCGCATGGACCACACATGATGTAAGGTCTGGCTTTGGTGAGGACTCGGGATTGTATTCCCAGCAAGGTGGGATGCTACGGAAGGGTTCTGAGTCAGGCGTGATGCATT 76 2 35 41 1 1 C/+387 0.0263 2;2 34.0 1 32.3 1 60.0 4.000 0.0286 0.0263 70 2.000 1 2.5 2 70 TTATTCTGAGAAGGGCTTCA CAGGGCCAAGGGGTCCATGG 20:44885702-44969115 Insertion 0 2-8-1 NA24385_chr_20_44885701_44969115 testbed 20 44902141 44902141 T C 82 2 48 31 0 2 T/C 0.0244 2;0 9.0 0 42.0 0 60.0 4.000 0.0278 0 0 3.000 1 5.0 2 72 GGCACATCGTTATGGCTCAA AAATATTTGTTGATTAAATG 20:44885702-44969115 SNV 0 0 @@ -340,7 +340,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44901897 44901897 C CTATGTTCTCTGGGCT NA24385_chr_20_44885701_44969115 testbed 20 44967833 44967834 GA G 70 2 31 36 2 0 A/-1 0.0286 2;0 60.0 0 37.0 1 60.0 4.000 0.0299 0 1 2.000 1 0 2 67 GCTGGAACAAAGTGACCAGC AGGGAGAAGACAGAGAGGCG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44935063 44935063 T A 69 4 42 23 1 3 T/A 0.0580 2;2 7.0 0 42.0 0 60.0 8.000 0.0645 0 0 4.000 1 1.0 4 62 AAAGGGGTTGTCTCCAGGGG CCCCTGATGGGGCCACCCAA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44967928 44967928 A G 67 3 35 28 3 0 A/G 0.0448 2;0 10.7 1 31.7 1 60.0 2.000 0.0317 0.0299 2 1.000 1 4.3 2 63 TCCCAGCAAGGTGGGATGCT CGGAAGGGTTCTGAGTCAGG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44902338 44902338 A AGG 78 2 33 40 0 2 A/+2 0.0256 2;0 24.1 1 34.1 1 61.6 4.000 0.0282 0.0128 5 7.000 1 0 2 71 GAATGGGGAGCGACAATGGC GGGGGTATCAGATAGGTGAG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44902338 44902338 A AGG 78 2 33 40 0 2 A/+2 0.0256 2;0 23.5 1 33.2 1 60.0 4.000 0.0282 0.0128 5 7.000 1 0 2 71 GAATGGGGAGCGACAATGGC GGGGGTATCAGATAGGTGAG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44934946 44934946 T A 71 2 38 31 2 0 T/A 0.0282 2;0 38.0 0 42.0 0 60.0 4.000 0.0299 0 0 1.000 1 1.0 2 67 TTCCGGCTCTGGGTATAGCT ACCATGTGACCTCGGGCTGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44967742 44967742 A G 70 69 0 0 35 34 G/G 0.9857 0;2 32.6 1 39.6 1 60.0 22.000 1.0000 0.0571 0 3.000 1 1.3 66 66 CCATGCGAAGATTTGAGTCA ATTCATTGCAGGCAGAGGGA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44967679 44967680 GA G 67 2 27 38 1 1 A/-1 0.0299 2;2 5.0 1 34.5 1 60.0 4.000 0.0333 0.0149 0 6.000 1 3.0 2 60 GTCAAGGAAGCCTCTCCGGG GGTGGTATTTGATCAGCAAC 20:44885702-44969115 Deletion 0 0 @@ -364,13 +364,13 @@ NA24385_chr_20_44885701_44969115 testbed 20 44967215 44967215 C T 70 2 40 28 1 1 NA24385_chr_20_44885701_44969115 testbed 20 44967207 44967207 T TCACTAACCTGTAACTAAAATATCGCATTTTTCTTCAATTATAAATGTTGGCAACATACCACGGTAGTATTAGCAGTGCCTGTGACTTTGTCACCAACAGAAATCAGATATTTCCTATCACATTACAGTTGTTGCATACATTTTGAAACATCATTGACACTCATCACTGCTTCAAAATTGTTGTGGTTAATAGAACTGCCACGAGATCTTGTTATTTAATGCATTAATAAAGAAGTGCATCTAGTACTGTATCACTCATTTGTTTTGTAAATATTTTGAAAACGATTTCTATATAATTGGCTGCCTTGATAAATCTATGTATTTTCGTCTATGCCTTTAAAATCATTATTCTGAGAAGGGCTTCACCAGGGCCAAGGGGTCCATGGCCCCAGATGCATTAACTCCTGGAGTGGAGATGGATGGGGAGGAGGGGCGGGTTTTTAGCTGGAGTGGTCAAGGAAGCCTCTCCGGGGAGGTGGTATTTGATCAGCAACATAAAGTGGGCAAAGGAGCTGCCATGCGAAGATTTGAGTCAAATTCATTGCAGGCAGAGGGAAC 76 5 44 28 2 3 T/+557 0.0658 2;2 14.6 1 38.1 1 60.0 10.000 0.0685 0.0658 70 2.000 1 0.4 5 73 AAAAAAATTATATTTTTATC CACTAACCTGTAACTAAAAT 20:44885702-44969115 Insertion 0 5-8-1 NA24385_chr_20_44885701_44969115 testbed 20 44901667 44901668 CT C 66 2 37 27 2 0 T/-1 0.0303 2;0 45.0 0 42.0 0 60.0 4.000 0.0303 0 1 2.000 1 0 2 66 CCCAAGTTGTGTGGATGAGG TCCAATCCATGATTTAAGGC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44901637 44901637 C CCCTGGCATACCCAAGTTGTGTGGATGAGGCTTCCAATCCATGATTTAAGGCTGGGTCATCTCTGGTTCACCCTTACCCCAAGGGTGAATCCTTTGGAGTTCCAGTTTATTTTGGTGAGAATCTCTCACCTGATTTTCCACCTTGTTCAGGCCATGAACTTGGATTTCAATTCCCCTTATGCCGTGAGATCATCAGAAAACAAATTCAGATTTTCAAGGATCAGCAAATGCCCTCTGGACAAAAGTAGTTTCTATGCTCTCTAAGTTCTCTGGGCTTCTGTTTTTCCTTCAGTTTTGACCTAATAATTCCTGGTAATTCCTTACAAAGAGCTTACTTGTCAGCTCTGTGATGCACCAAAATAAA 68 2 37 30 1 1 C/+363 0.0294 2;2 51.5 1 39.0 1 60.0 4.000 0.0294 0.0294 70 3.000 1 0 2 68 AAAATTAAAGGTTTGAGGTT CCTGGCATACCCAAGTTGTG 20:44885702-44969115 Insertion 0 2-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44967186 44967186 G GA 73 2 44 24 1 1 G/+1 0.0274 2;2 62.9 1 38.5 1 62.4 4.000 0.0294 0 7 8.000 1 0 2 68 GGTCAGTGAAGTTAGAGGAG AAAAAAATTATATTTTTATC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44967186 44967186 G GA 73 2 44 24 1 1 G/+1 0.0274 2;2 60.5 1 37.0 1 60.0 4.000 0.0294 0 7 8.000 1 0 2 68 GGTCAGTGAAGTTAGAGGAG AAAAAAATTATATTTTTATC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44901745 44901746 AT A 70 4 25 41 2 2 T/-1 0.0571 2;2 18.5 1 39.2 1 60.0 8.000 0.0588 0.0286 3 4.000 1 0 4 68 ATCCTTTGGAGTTCCAGTTT TTTGGTGAGAATCTCTCACC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44968681 44968682 AT A 65 2 30 33 2 0 T/-1 0.0308 2;0 55.0 0 39.5 1 60.0 4.000 0.0312 0 2 3.000 1 0.5 2 64 CCCACCGGGTACAACTACAA TTAACTGCTTATTGGACATC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44968641 44968641 A T 78 3 30 45 3 0 A/T 0.0385 2;0 73.0 0 42.0 0 60.0 6.000 0.0390 0 0 2.000 1 1.0 3 77 AATTCTAATTAGGTTTTGTT TTAGCAGTAGAATAAAATTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44902946 44902947 GT G 80 2 39 38 0 2 T/-1 0.0250 2;0 49.0 0 42.0 0 60.0 4.000 0.0308 0 2 3.000 1 0 2 65 AGGCTGGGTTTGCAGCCAGG TTCCCTGGCCTAGGTCCTCA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44902974 44902974 G A 70 27 23 20 17 10 G/A 0.3857 2;2 39.9 1 40.0 1 60.0 54.000 0.3913 0 0 1.000 1 1.6 27 69 GGCCTAGGTCCTCAACAAGG TCTTTGGTGCCAACCTGGAC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44968452 44968452 C CT 98 2 40 54 0 2 C/+1 0.0204 2;0 48.3 0 43.1 0 61.6 4.000 0.0217 0 5 6.000 1 0 2 92 GTGGGGTTTCCAGGAACAGG TTTTTATAGGAAGCTGACTC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44968452 44968452 C CT 98 2 40 54 0 2 C/+1 0.0204 2;0 47.0 0 42.0 0 60.0 4.000 0.0217 0 5 6.000 1 0 2 92 GTGGGGTTTCCAGGAACAGG TTTTTATAGGAAGCTGACTC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44935705 44935705 C T 47 4 22 21 4 0 C/T 0.0851 2;0 9.0 0 32.0 1 60.0 3.000 0.0667 0 0 1.000 1 1.8 3 45 TGTGCTGGGGGCACCTCGGC AGCCCCAGAAACCTGGGGAG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44902939 44902939 A G 92 3 47 42 0 3 A/G 0.0326 2;0 8.0 0 40.3 1 60.0 6.000 0.0349 0 2 1.000 1 2.0 3 86 GCTGGGAAGGCTGGGTTTGC GCCAGGGTTTCCCTGGCCTA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44968544 44968544 T A 79 2 24 53 0 2 T/A 0.0253 2;0 74.0 0 42.0 0 60.0 4.000 0.0290 0 0 4.000 1 1.0 2 69 GTCACTTTCCCCAAAAGCAT TTGGGACCATGAGGAAATCA 20:44885702-44969115 SNV 0 0 @@ -384,12 +384,12 @@ NA24385_chr_20_44885701_44969115 testbed 20 44936154 44936156 GTC G 29 2 15 12 2 NA24385_chr_20_44885701_44969115 testbed 20 44968916 44968916 C T 77 2 34 41 1 1 C/T 0.0260 2;2 6.5 1 34.5 1 33.0 4.000 0.0267 0.0130 2 2.000 1 3.0 2 75 CGAGACCATCCTGGCTAACA GGTGAAATCCCATCTCTACT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44903224 44903251 CAAGAGAAATGAAAACATATGTCCACAT C 95 2 34 58 2 0 A/-27 0.0211 2;0 18.0 1 42.0 1 60.0 4.000 0.0220 0.0211 2 2.000 2 0 2 91 TTCATTCCTAGGTGTCTACA AAAAGCTCATACGAAAATGT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44968755 44968755 C A 76 2 53 21 1 1 C/A 0.0263 2;2 41.5 1 42.0 0 60.0 4.000 0.0267 0 0 2.000 1 1.0 2 75 TGTGTCTAATTCCGGGTCTG CGTCTTTGTCTCAAGTAATT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44968720 44968720 G GC 73 5 42 25 1 4 G/+1 0.0685 2;2 42.2 1 43.4 0 62.0 10.000 0.0758 0 6 7.000 1 0 5 66 ATCTCCCTCAGAATAACATA CCCCCCAGACTCATTGTGTC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44968720 44968720 G GC 73 5 42 25 1 4 G/+1 0.0685 2;2 40.8 1 42.0 0 60.0 10.000 0.0758 0 6 7.000 1 0 5 66 ATCTCCCTCAGAATAACATA CCCCCCAGACTCATTGTGTC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44903240 44903240 A T 91 3 33 52 0 3 A/T 0.0330 2;0 24.0 0 38.7 1 60.0 6.000 0.0341 0 0 2.000 2 1.3 3 88 TACACAAGAGAAATGAAAAC TATGTCCACATAAAAGCTCA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44968798 44968798 C T 88 2 63 23 1 1 C/T 0.0227 2;2 22.0 1 42.0 0 60.0 4.000 0.0235 0 0 1.000 1 1.0 2 85 TTTTCGGGGAATCCATATAT TGTAAGAAAAGAGAACTAAT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44935327 44935328 GA G 58 2 34 22 1 1 A/-1 0.0345 2;2 25.0 1 42.0 0 60.0 4.000 0.0370 0 4 5.000 1 2.0 2 54 GGGAACAGTTGAGTGCTACA AAAACTGAGGCAGACAGGAT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44968064 44968064 G GC 64 64 0 0 34 30 +1/+1 1.0000 0;2 35.3 1 39.0 1 59.3 20.333 0.9839 0.2031 1 2.000 1 1.4 61 62 CCAGGAGCTAGGGGTCTGCA CATCCAGTGAAAGATCACGT 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44935366 44935366 T TG 47 8 20 15 5 3 T/+1 0.1702 2;2 59.0 1 42.4 1 62.4 16.000 0.2222 0 7 8.000 1 1.0 8 36 GATAGAAGATGGGTCGGGGT GGGGGGGACGAGGAAATGGT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44935366 44935366 T TG 47 8 20 15 5 3 T/+1 0.1702 2;2 56.8 1 40.8 1 60.0 16.000 0.2222 0 7 8.000 1 1.0 8 36 GATAGAAGATGGGTCGGGGT GGGGGGGACGAGGAAATGGT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44935362 44935533 GGGTTGGGGGGGACGAGGAAATGGTCATTGGTGGGCAAAGACCAAAGGATGTCACTATGGGTGTAGAGGCCAAGTTTCAACAAGGGCTGTAGACTAGGGGCAACTGAGGGGGACGGAGTGGGCACTGATGGACACATATACGGGATACAAATGAAGGACAGAGAGTCGCGGT G 51 2 30 21 0 2 G/-171 0.0392 2;0 242.0 1 41.6 1 60.0 4.000 0.0385 0.0392 4 4.000 1 0 2 52 ACAGGATAGAAGATGGGTCG GGTTAGGGAGGAGCCTTTGG 20:44885702-44969115 Deletion 0 2-1-1 NA24385_chr_20_44885701_44969115 testbed 20 44967953 44967953 A G 69 3 41 25 0 3 A/G 0.0435 2;0 17.3 1 25.0 1 60.0 2.000 0.0323 0.0290 0 1.000 1 4.0 2 62 AGGGTTCTGAGTCAGGCGTG TGCATTCAGATTTCTCAATT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44968040 44968040 A G 60 60 0 0 37 23 G/G 1.0000 0;2 35.4 1 37.5 1 59.2 9.000 1.0000 0 0 2.000 1 1.7 54 54 TGGGTAGGAGGGGAAGCAGG AGACCAGGAGCTAGGGGTCT 20:44885702-44969115 SNV 0 0 @@ -398,28 +398,28 @@ NA24385_chr_20_44885701_44969115 testbed 20 44935243 44935243 A G 93 2 28 63 2 0 NA24385_chr_20_44885701_44969115 testbed 20 44935256 44935258 ACA TGT 92 7 29 55 1 6 ACA/TGT 0.0761 2;2 9.3 1 40.6 1 60.0 14.000 0.0787 0.0109 0 2.000 2 1.9 7 89 ATGGAAGAGGAGTGTCCCAG CTGGGACAAGGAGGGAAATA 20:44885702-44969115 Complex 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44968348 44968348 A C 86 4 53 26 4 0 A/C 0.0465 2;0 9.0 1 30.8 1 60.0 3.000 0.0405 0 0 1.000 1 2.2 3 74 CCCCCAATATTACCTGGGGG GCAATGTGCCCAGCTCAGAG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44968215 44968215 T C 77 2 40 35 0 2 T/C 0.0260 2;0 25.0 0 42.0 0 60.0 4.000 0.0263 0 0 2.000 1 1.5 2 76 GCTTTGGCTTATGCCACTCC GGAACTCGCTTTCCTGCCAT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44902761 44902761 T TG 68 2 37 28 1 1 T/+1 0.0294 2;2 18.5 1 38.0 1 61.6 4.000 0.0312 0 5 6.000 1 0 2 64 GAAAATTTTGTCATCTCCCT GGGGGAGAGGACTCTGCAGC 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44968304 44968304 C CT 76 3 46 26 2 1 C/+1 0.0395 2;2 31.1 1 43.1 0 61.6 6.000 0.0411 0 5 6.000 1 0.3 3 73 AAAACTGCTAGTAGCCTCCT TTTTTCCATTTCCTTACTAA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44902761 44902761 T TG 68 2 37 28 1 1 T/+1 0.0294 2;2 18.0 1 37.0 1 60.0 4.000 0.0312 0 5 6.000 1 0 2 64 GAAAATTTTGTCATCTCCCT GGGGGAGAGGACTCTGCAGC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44968304 44968304 C CT 76 3 46 26 2 1 C/+1 0.0395 2;2 30.3 1 42.0 0 60.0 6.000 0.0411 0 5 6.000 1 0.3 3 73 AAAACTGCTAGTAGCCTCCT TTTTTCCATTTCCTTACTAA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44904163 44904163 T C 100 43 31 25 26 17 T/C 0.4300 2;2 42.0 1 38.5 1 60.0 13.333 0.4348 0.0200 0 1.000 1 1.4 40 92 TTTATGATGCTTATTTTTTG CACCCTCTCTCCTCCATAGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44904142 44904143 AT A 96 2 54 40 2 0 T/-1 0.0208 2;0 25.0 0 37.0 1 60.0 4.000 0.0222 0 2 3.000 1 2.0 2 90 ACATATTATGCGATTTACTT TTATGATGCTTATTTTTTGT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44936741 44936741 G A 50 2 32 16 1 1 G/A 0.0400 2;2 29.0 1 42.0 0 60.0 4.000 0.0435 0 1 3.000 1 1.0 2 46 GGAGGGGGCGCGCAGGGCCG GCGCAGGCACCCCGGCTCCT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44903991 44903992 CT C 93 4 33 56 4 0 T/-1 0.0430 2;0 32.8 1 40.1 1 60.0 8.000 0.0449 0.0108 1 3.000 1 1.2 4 89 ATATCTGTGGGCCTCCCTCC TGCCATCTGACTATCTTTGT 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44936779 44936779 G GC 41 2 26 12 2 0 G/+1 0.0488 2;0 23.8 0 38.2 1 62.0 4.000 0.0526 0 6 7.000 1 0.5 2 38 CCTCCTGCGGCTGGAGGCTC CCCCCCGCGCCGCCTGCCCG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44936779 44936779 G GC 41 2 26 12 2 0 G/+1 0.0488 2;0 23.0 0 37.0 1 60.0 4.000 0.0526 0 6 7.000 1 0.5 2 38 CCTCCTGCGGCTGGAGGCTC CCCCCCGCGCCGCCTGCCCG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44904018 44904018 G GAAAAGCAACCCGACCACTCCACCTAAAATCACAGCCCCTCTCCAAGGCTCTGCCAACTCCCCTTTCTCTATTCTTTACTTTCCATAGCTCTTATCACCTTCTAACATATTATGCGATTTACTTATTTATGATGCTTATTTTTTGTCACCCTCTCTCCTCCATAGCACGTACACTTCAAGGGGATAGGAATCTTTGTTGGTTCAATTCACTGATGTATCCTTAGGGCATAGAATAGTACCTGGCATGGAAAGGTGCTCAACAAATATTTGTTGAGTGGTTGAATTAATAAGTGATTCAACAAACGTTGTCTGAACACCCTCTCTGTGCCAGGAGCTGAGCCTTCAGAAGCGCATTGAATGAGCAAATCTCTCACCCTTAGATGTCTTGCATTTTAGTGGTAGAGACCATAGGTGAAAAAA 115 3 53 60 1 2 G/+419 0.0261 2;2 21.0 1 37.2 1 60.0 6.000 0.0270 0.0261 70 10.000 1 0 3 111 TCTGACTATCTTTGTTCAAT AAAAGCAACCCGACCACTCC 20:44885702-44969115 Insertion 0 3-6-2 NA24385_chr_20_44885701_44969115 testbed 20 44904377 44904377 G T 103 2 53 47 2 0 G/T 0.0194 2;0 74.0 0 42.0 0 60.0 4.000 0.0202 0 0 1.000 1 1.0 2 99 CCTTCAGAAGCGCATTGAAT AGCAAATCTCTCACCCTTAG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44937141 44937141 T TG 34 4 11 19 2 2 T/+1 0.1176 2;2 27.1 1 35.8 1 62.0 8.000 0.1333 0.0294 6 7.000 1 0.5 4 30 AGGGAGTGTGCGTGTCTGAC GGGGGGAAGTGTGCAAGGGA 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44904431 44904431 G GA 80 4 32 30 2 2 G/+1 0.0500 2;2 15.3 1 41.0 1 64.4 8.000 0.0645 0.0250 12 13.000 1 0.5 4 62 TAGTGGTAGAGACCATAGGT AAAAAAAAAAAATTAAGCCA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44937141 44937141 T TG 34 4 11 19 2 2 T/+1 0.1176 2;2 26.2 1 34.6 1 60.0 8.000 0.1333 0.0294 6 7.000 1 0.5 4 30 AGGGAGTGTGCGTGTCTGAC GGGGGGAAGTGTGCAAGGGA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44904431 44904431 G GA 80 4 32 30 2 2 G/+1 0.0500 2;2 14.2 1 38.2 1 60.0 8.000 0.0645 0.0250 12 13.000 1 0.5 4 62 TAGTGGTAGAGACCATAGGT AAAAAAAAAAAATTAAGCCA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44904431 44904432 GA G 81 26 27 28 15 11 A/-1 0.3210 2;2 39.6 1 41.7 1 60.0 52.000 0.3250 0.0123 11 12.000 1 0.8 26 80 TAGTGGTAGAGACCATAGGT AAAAAAAAAAATTAAGCCAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44937162 44937162 C T 43 2 18 23 2 0 C/T 0.0465 2;0 26.0 0 42.0 0 60.0 4.000 0.0465 0 1 2.000 1 1.0 2 43 GGGGGGAAGTGTGCAAGGGA GGATCCCTTCCTTCCTCCCG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44904233 44904233 T A 110 6 43 61 2 4 T/A 0.0545 2;2 29.8 1 31.8 1 60.0 2.000 0.0388 0.0091 0 1.000 1 1.8 4 103 GTTGGTTCAATTCACTGATG ATCCTTAGGGCATAGAATAG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44904247 44904247 A T 112 2 42 67 0 2 A/T 0.0179 2;0 33.0 0 42.0 0 60.0 4.000 0.0194 0 0 1.000 1 1.0 2 103 CTGATGTATCCTTAGGGCAT GAATAGTACCTGGCATGGAA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44937010 44937010 G A 54 3 21 30 0 3 G/A 0.0556 2;0 25.0 0 42.0 0 60.0 6.000 0.0577 0 0 2.000 1 1.0 3 52 CGCGGCCGCCCGCAGGAGCC GAGGGAGAGCGGGAGCGAGA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44904293 44904293 T C 123 4 53 65 4 0 T/C 0.0325 2;0 21.0 0 40.8 1 60.0 8.000 0.0370 0 0 2.000 1 1.8 4 108 CTCAACAAATATTTGTTGAG GGTTGAATTAATAAGTGATT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44969099 44969099 C CAA 34 26 3 3 9 16 C/+2 0.7647 2;2 40.1 1 41.2 1 60.3 25.000 0.7353 0.0588 10 12.000 1 1.5 25 34 AAAAGAGCGAGACTCCATCT AAAAAAAAAAGAAAAGAGAA 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44969099 44969099 C CA 34 2 3 3 0 2 C/+1 0.0588 2;0 44.0 1 39.2 1 63.6 4.000 0.0588 0 10 11.000 1 0.5 2 34 AAAAGAGCGAGACTCCATCT AAAAAAAAAAGAAAAGAGAA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44969099 44969099 C CAA 34 26 3 3 9 16 C/+2 0.7647 2;2 37.9 1 38.9 1 57.1 25.000 0.7353 0.0588 10 12.000 1 1.5 25 34 AAAAGAGCGAGACTCCATCT AAAAAAAAAAGAAAAGAGAA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44969099 44969099 C CA 34 2 3 3 0 2 C/+1 0.0588 2;0 41.5 1 37.0 1 60.0 4.000 0.0588 0 10 11.000 1 0.5 2 34 AAAAGAGCGAGACTCCATCT AAAAAAAAAAGAAAAGAGAA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44903634 44903634 G A 79 2 49 28 1 1 G/A 0.0253 2;2 28.5 1 42.0 0 60.0 4.000 0.0263 0 0 2.000 1 1.0 2 76 GGCTCTTTCTGGGGTGAAAG AATGTTCTGCAACTGCGTGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44903466 44903467 CA C 65 3 29 33 2 1 A/-1 0.0462 2;2 39.3 1 39.5 1 60.0 6.000 0.0476 0.0154 12 13.000 1 1.7 3 63 GCAATGAAATGAGCCAGATG AAAAAAAAAAAACCAAAAAT 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44903466 44903466 C CA 60 21 14 13 10 10 C/+1 0.3500 2;2 48.8 1 42.7 1 61.7 42.000 0.4286 0 13 14.000 1 3.5 21 49 GCAATGAAATGAGCCAGATG AAAAAAAAAAAAACCAAAAA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44903466 44903466 C CA 60 21 14 13 10 10 C/+1 0.3500 2;2 45.3 1 39.7 1 57.4 42.000 0.4286 0 13 14.000 1 3.5 21 49 GCAATGAAATGAGCCAGATG AAAAAAAAAAAAACCAAAAA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44936200 44936200 T C 24 9 7 8 6 3 T/C 0.3750 2;2 21.7 1 34.6 1 60.0 3.500 0.3500 0.1250 0 1.000 1 2.6 7 20 AGAGCAGCGCTGGCTCTCGC CACCGCCAGCCCGCCCGACG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44936194 44936194 T C 21 5 7 9 2 3 T/C 0.2381 2;2 26.6 1 38.0 1 60.0 10.000 0.2632 0 3 2.000 2 2.8 5 19 AGGAAGAGAGCAGCGCTGGC CTCGCTCACCGCCAGCCCGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44968990 44968990 C A 65 2 26 36 2 0 C/A 0.0308 2;0 9.0 0 42.0 0 41.5 4.000 0.0339 0 2 1.000 1 1.0 2 59 GGCACCTGTAGTCCCAGCTA TCGGGAGGCTGAGGCAGGAG 20:44885702-44969115 SNV 0 0 @@ -428,7 +428,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44903443 44903443 T C 76 35 0 0 18 1 NA24385_chr_20_44885701_44969115 testbed 20 44903719 44904109 A 104 2 40 55 1 1 A/ 0.0192 2;2 24.0 1 40.1 1 60.0 4.000 0.0208 0.0192 0 5.000 1 1.0 2 96 GCTTACAATGGGTGAATTTT TATCACCTTCTAACATATTA 20:44885702-44969115 INV 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44903734 44903734 T A 94 4 41 49 4 0 T/A 0.0426 2;0 40.0 0 42.0 0 60.0 8.000 0.0440 0 1 2.000 2 1.0 4 91 ATTTTAGAGCATGTAAATTA ACCTCAATAAAGCTTTTGGA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44903692 44903692 A C 87 2 36 49 2 0 A/C 0.0230 2;0 5.0 0 42.0 0 15.0 4.000 0.0235 0 0 2.000 1 2.0 2 85 AATTTACGAAAACTCATTGA TTGTGTGCTTACAATGGGTG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44936448 44936448 G GC 20 4 9 7 4 0 G/+1 0.2000 2;0 59.4 1 42.8 0 61.2 8.000 0.2000 0 4 5.000 1 1.5 4 20 GGGAGGGGCCGGGGAGCCGA CCCCGCTAGCAGGGTTGGGG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44936448 44936448 G GC 20 4 9 7 4 0 G/+1 0.2000 2;0 58.2 1 42.0 0 60.0 8.000 0.2000 0 4 5.000 1 1.5 4 20 GGGAGGGGCCGGGGAGCCGA CCCCGCTAGCAGGGTTGGGG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44903706 44903706 A T 110 2 46 62 0 2 A/T 0.0182 2;0 44.0 0 42.0 0 60.0 4.000 0.0190 0 0 1.000 1 1.0 2 105 CATTGAATTGTGTGCTTACA TGGGTGAATTTTAGAGCATG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44937870 44937871 CT C 58 2 31 25 0 2 T/-1 0.0345 2;0 44.0 1 42.0 0 60.0 4.000 0.0351 0 1 2.000 1 2.5 2 57 CATCCTTAACTTGGTGCCAC TGACCTGGAGAAGTCTCCCA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44905202 44905203 CA C 109 2 41 65 2 0 A/-1 0.0183 2;0 61.0 0 39.5 1 60.0 4.000 0.0187 0 0 2.000 1 0.5 2 107 AGGGCTACCCGAGCACCTTC GGTTCTATCTCCTTTAATCC 20:44885702-44969115 Deletion 0 0 @@ -438,7 +438,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44905355 44905356 CT C 75 2 25 48 1 NA24385_chr_20_44885701_44969115 testbed 20 44938131 44938131 T C 75 32 30 13 17 15 T/C 0.4267 2;2 40.8 1 38.0 1 58.3 9.667 0.4085 0.0133 0 1.000 1 1.8 29 71 GATAGGACCAGTGACTCCCA AGACCCACCCTTTGTCTTGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44938214 44938215 GA G 85 2 42 41 0 2 A/-1 0.0235 2;0 54.0 0 42.0 0 60.0 4.000 0.0250 0 1 2.000 1 1.0 2 80 TGGCTTCCAGATAGGTGAGT AGGATAACAGGAGACTGGAC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44905466 44905466 C CAA 77 32 24 21 17 15 C/+2 0.4156 2;2 36.0 1 38.8 1 60.0 31.000 0.4189 0.0390 1 3.000 1 0.9 31 74 CAGGGAAGATGCCAGATCCA AGAGTGTGAGCTTCTCCACC 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44938178 44938178 G GCC 85 2 37 40 0 2 G/+2 0.0235 2;0 28.9 0 43.4 0 62.0 4.000 0.0263 0 6 8.000 1 0 2 76 GGTCCCCTTAGGAGTTGCCC CCCCCCTATTCCCCATGGCT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44938178 44938178 G GCC 85 2 37 40 0 2 G/+2 0.0235 2;0 28.0 0 42.0 0 60.0 4.000 0.0263 0 6 8.000 1 0 2 76 GGTCCCCTTAGGAGTTGCCC CCCCCCTATTCCCCATGGCT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44905246 44905246 A C 91 3 47 41 1 2 A/C 0.0330 2;2 7.0 1 23.7 1 60.0 2.000 0.0241 0.0220 0 2.000 1 1.3 2 83 ACATCAGCAACTATACTGGG GGAAGGAACTGCTGGCATCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44905321 44905321 G C 73 31 13 29 17 14 G/C 0.4247 2;2 31.2 1 39.6 1 60.0 30.000 0.4286 0.0548 0 1.000 1 2.6 30 70 GTGTATCCAGCATGCAGGTA AGTCTAATGACGACGTTGGA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44938091 44938091 T C 81 3 49 28 2 1 T/C 0.0370 2;2 25.3 1 35.3 1 41.7 2.000 0.0274 0 0 1.000 1 2.7 2 73 CCCCACTCCTGAGTTCCCAA ATGAGGTCGTTGATGGTAGG 20:44885702-44969115 SNV 0 0 @@ -451,25 +451,25 @@ NA24385_chr_20_44885701_44969115 testbed 20 44904659 44904659 A C 107 2 53 51 2 NA24385_chr_20_44885701_44969115 testbed 20 44937228 44937228 A AGC 53 50 1 0 30 20 A/+2 0.9434 0;2 35.3 1 40.0 1 60.0 49.000 0.9800 0.1698 2 2.000 2 1.2 49 50 TGCAGGGCCCGCCGGGCAGG GCCGCGCAGCGCCAAGCCGC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44937289 44937289 A G 41 19 17 4 12 7 A/G 0.4634 2;2 28.9 1 32.0 1 60.0 5.333 0.4706 0 1 1.000 1 2.5 16 34 CCCCGCAGCCGGGGAACCCC GCCCCCGCCCCCCGGATCGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44937296 44937296 G C 41 2 26 11 2 0 G/C 0.0488 2;0 21.5 1 34.5 1 60.0 4.000 0.0606 0 0 6.000 1 5.0 2 33 GCCGGGGAACCCCAGCCCCC CCCCCCGGATCGCGCCCCTC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44937296 44937296 G GC 41 2 26 11 2 0 G/+1 0.0488 2;0 49.6 0 33.1 0 62.0 4.000 0.0606 0 6 7.000 1 6.2 2 33 GCCGGGGAACCCCAGCCCCC CCCCCCGGATCGCGCCCCTC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44937296 44937296 G GC 41 2 26 11 2 0 G/+1 0.0488 2;0 48.0 0 32.0 0 60.0 4.000 0.0606 0 6 7.000 1 6.2 2 33 GCCGGGGAACCCCAGCCCCC CCCCCCGGATCGCGCCCCTC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44904838 44904838 A C 114 43 28 41 18 25 A/C 0.3772 2;2 33.6 1 39.0 1 60.0 13.333 0.3774 0.0263 0 3.000 2 1.5 40 106 AGAGAAGATGCTGGCCACAC CAGCTGGAACTCTCTGACTG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44904707 44904707 T TGATGGGGGCAGAGGAGAGATGCTGGTGAGGTGGTTGCTGGTGCCAGGCTGCAGAGGACTTTGGGCACATCCAAATATGTAGCAGTGAGCTCAGTGGGGCACCCACCAATCAGAGAAGATGCTGGCCACACACAGCTGGAACTCTCTGACTGAATCTCTGCAGAGCCTGAAGCCAAAGGAGAGACCCTGGACTTTAGACATGTTGGTGATCCCTGAAGCGTTTAAACAAGGGAGTGACAGTGATTAGATTCACCTTTTAAAGGATCACTTCGGCTGTCAAGAGCAGAACAGACTGGAGGGGCCGGAGTTGCTTCAGGGAGGCTGGATAGGAGACTGTTTAGCTAGTCCGGCTGGGAG 96 5 58 35 3 2 T/+356 0.0521 2;2 52.8 1 40.6 1 60.0 10.000 0.0549 0.0521 70 2.000 1 0 5 91 TCCAGCTGAAATATGAACTG GATGGGGGCAGAGGAGAGAT 20:44885702-44969115 Insertion 0 5-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44937593 44937593 C G 58 19 19 20 14 5 C/G 0.3276 2;2 30.8 1 40.9 1 60.0 38.000 0.3333 0 2 1.000 1 1.1 19 57 AGAGGAGCAGGGGCGCAGGC AGGGTAGGAGCAGGCTTCTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44938975 44938976 AT A 83 2 37 44 0 2 T/-1 0.0241 2;0 39.0 1 42.0 0 60.0 4.000 0.0250 0 8 9.000 1 2.5 2 80 CTTCTCTCTCTTTTATTTTT TTTTTTTTGAGATGGGGGTC 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44938975 44938975 A AT 82 40 20 21 16 23 A/+1 0.4878 2;2 35.0 1 40.1 1 60.0 80.000 0.5128 0.0244 9 10.000 1 0.9 40 78 CTTCTCTCTCTTTTATTTTT TTTTTTTTTGAGATGGGGGT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44938975 44938975 A AT 82 40 20 21 16 23 A/+1 0.4878 2;2 33.4 1 38.2 1 57.2 80.000 0.5128 0.0244 9 10.000 1 0.9 40 78 CTTCTCTCTCTTTTATTTTT TTTTTTTTTGAGATGGGGGT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44938974 44938974 T C 81 2 35 44 2 0 T/C 0.0247 2;0 44.5 1 39.5 1 60.0 4.000 0.0260 0 0 1.000 1 1.5 2 77 TCTTCTCTCTCTTTTATTTT ATTTTTTTTTGAGATGGGGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44905988 44905988 T G 73 33 20 20 16 17 T/G 0.4521 2;2 44.8 1 38.5 1 60.0 32.000 0.4638 0.0411 2 3.000 1 1.7 32 69 TGGAGAGCAGCGGGCCAGGT GGGAGGGCGCTGTCACAGCC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44938776 44938776 C CTCTTCCTCCAGGCTCTGGTGTGTGCTGTTCATCTCTGGAGTCAGACCTACTTAGTTGTCCACAGGTTGTTTTGGTCTGGGACACTGTAGG 79 3 16 17 0 3 C/+90 0.0380 2;0 49.3 1 42.8 1 62.9 6.000 0.0857 0.0253 70 2.000 1 1.0 3 35 AGTTCCCATTCCTTCTTTGC TCTTCCTCCAGGCTCTGGTG 20:44885702-44969115 Insertion 0 3-0-0 +NA24385_chr_20_44885701_44969115 testbed 20 44938776 44938776 C CTCTTCCTCCAGGCTCTGGTGTGTGCTGTTCATCTCTGGAGTCAGACCTACTTAGTTGTCCACAGGTTGTTTTGGTCTGGGACACTGTAGG 79 3 16 17 0 3 C/+90 0.0380 2;0 40.3 1 35.0 1 51.5 6.000 0.0857 0.0253 70 2.000 1 1.0 3 35 AGTTCCCATTCCTTCTTTGC TCTTCCTCCAGGCTCTGGTG 20:44885702-44969115 Insertion 0 3-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44938853 44938854 TG T 83 2 36 45 1 1 G/-1 0.0241 2;2 65.5 1 42.0 0 60.0 4.000 0.0256 0 2 3.000 1 2.0 2 78 GTCCACAGGTTGTTTTGGTC GGACACTGTTGCTGTCACAT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44938851 44938851 T C 78 49 15 14 20 29 T/C 0.6282 2;2 37.2 1 39.1 1 60.0 48.000 0.6400 0.0256 0 1.000 1 1.8 48 75 TTGTCCACAGGTTGTTTTGG CTGGGACACTGTTGCTGTCA 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44906076 44906076 C CA 71 6 27 37 3 3 C/+1 0.0845 2;2 38.6 1 34.9 1 62.0 5.000 0.0794 0.0282 6 7.000 1 1.6 5 63 ACACACCACGTCTATTTTTG AAAAAATGAATAAGGCAATA 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44938844 44938844 G GT 79 3 34 42 0 3 G/+1 0.0380 2;0 18.4 0 42.8 0 61.2 6.000 0.0390 0 4 5.000 1 1.0 3 77 TACTTAGTTGTCCACAGGTT TTTTGGTCTGGGACACTGTT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44906076 44906076 C CA 71 6 27 37 3 3 C/+1 0.0845 2;2 37.3 1 33.8 1 60.0 5.000 0.0794 0.0282 6 7.000 1 1.6 5 63 ACACACCACGTCTATTTTTG AAAAAATGAATAAGGCAATA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44938844 44938844 G GT 79 3 34 42 0 3 G/+1 0.0380 2;0 18.0 0 42.0 0 60.0 6.000 0.0390 0 4 5.000 1 1.0 3 77 TACTTAGTTGTCCACAGGTT TTTTGGTCTGGGACACTGTT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44938838 44938838 C T 78 2 31 45 2 0 C/T 0.0256 2;0 29.0 0 42.0 0 60.0 4.000 0.0263 0 0 2.000 2 1.0 2 76 CAGACCTACTTAGTTGTCCA AGGTTGTTTTGGTCTGGGAC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44906413 44906413 T TGATGGTTGTAACGAGGAGGGGGCGGGCACCAGATTGGAGTGGGCTGAGCAGTGAGTGGGAGAGTGAAGCGAAGACAACTTGATAAGTTGGGCTTTGAAGGGAAGGAGGGAGGGGGCGGTAGCTGGA 103 2 55 47 2 0 T/+126 0.0194 2;0 23.0 1 41.6 1 60.0 4.000 0.0227 0.0194 70 2.000 2 0.5 2 88 GAAGGCCACCTGTGACCTGG GATGGTTGTAACGAGGAGGG 20:44885702-44969115 Insertion 0 2-6-1 NA24385_chr_20_44885701_44969115 testbed 20 44939146 44939147 AT A 66 2 32 31 2 0 T/-1 0.0303 2;0 29.0 0 39.5 1 60.0 4.000 0.0333 0 3 4.000 1 1.0 2 60 TTCCTATCCCAATGTTTCCT TTTCAGGCTCATTCTACCGT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44906303 44906303 C CCCGCCCCCCACTGGTCCAGTGCTGATAAGAGACCAAGGGGGAGGGGCCCCTTGAGGTGAGGATCAGGGCGTCCTCAGTGACAGCACCAGGAAGGCCACCTGTGACCTGGTGATGGTTGTAACGAGGAGGGGGCGGGCACCAGATTGGAGTGGGCTGAGCAGTGAGTGGGAGAGTGAAGCGAAGACAACTTGATAAGTTGGGCTTTGAAGGGAAGGAGGGAGGGGGCGGTAGCTGGAGTCCAGCTA 109 7 58 34 3 4 C/+245 0.0642 2;2 30.1 1 38.2 1 53.7 14.000 0.0769 0.0642 70 3.000 1 1.7 7 91 GGGGTGAGTTTGGAGGAGGG CCGCCCCCCACTGGTCCAGT 20:44885702-44969115 Insertion 0 7-6-1 NA24385_chr_20_44885701_44969115 testbed 20 44939034 44939034 G T 89 2 41 46 2 0 G/T 0.0225 2;0 14.0 0 42.0 0 60.0 4.000 0.0235 0 0 1.000 1 1.5 2 85 CTGGATTCCTGGACTCAGGT ATCATTCTGCCTCAGCCTCT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44906339 44906339 A AG 99 2 55 39 0 2 A/+1 0.0202 2;0 48.8 1 40.6 1 61.6 4.000 0.0225 0 5 6.000 1 3.1 2 89 CCAGTGCTGATAAGAGACCA GGGGGAGGGGCCCCTTGAGG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44906339 44906339 A AG 99 2 55 39 0 2 A/+1 0.0202 2;0 47.5 1 39.5 1 60.0 4.000 0.0225 0 5 6.000 1 3.1 2 89 CCAGTGCTGATAAGAGACCA GGGGGAGGGGCCCCTTGAGG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44906315 44906315 T C 100 59 30 11 30 29 T/C 0.5900 2;2 26.3 1 40.3 1 60.0 28.500 0.6064 0.0100 1 2.000 1 1.6 57 94 GAGGAGGGCCCGCCCCCCAC GGTCCAGTGCTGATAAGAGA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44939093 44939093 G A 90 50 23 15 27 23 G/A 0.5556 2;2 28.1 1 33.3 1 60.0 4.000 0.5263 0.0222 1 1.000 1 1.6 40 76 GGCATGTGCTGCTGCACCCA CTCCCCATGACTCTTTATTA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44938399 44938400 CT C 62 4 27 30 0 4 T/-1 0.0645 2;0 38.5 1 42.0 0 60.0 8.000 0.0690 0 0 3.000 1 0.5 4 58 CCTCCTTCCCCAATTTCCAT CCATCTCCACACCCTAGTCC 20:44885702-44969115 Deletion 0 0 @@ -496,7 +496,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44905819 44905849 GAGATTTAAGGGGTGGCA NA24385_chr_20_44885701_44969115 testbed 20 44938583 44939018 T 94 2 53 28 2 0 T/ 0.0213 2;0 29.0 1 36.9 1 60.0 4.000 0.0260 0.0213 1 3.000 1 0 2 77 ATTTCCCTTCATTGATCTCT TTCCTGGACTCAGGTGATCA 20:44885702-44969115 INV 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44939950 44939950 A G 77 38 21 17 25 13 A/G 0.4935 2;2 32.0 1 38.7 1 60.0 37.000 0.5000 0.0130 0 3.000 2 1.4 37 74 GTGGTGAGTCTACAAATAAG GAGACACCACTCCTCCAGGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44939963 44939964 CT C 73 2 43 28 1 1 T/-1 0.0274 2;2 26.5 1 42.0 0 60.0 4.000 0.0290 0 0 4.000 1 1.0 2 69 AAATAAGAGAGACACCACTC CCAGGGATTGGGTAGGATGA 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44939916 44939916 C CT 69 3 35 29 1 2 C/+1 0.0435 2;2 63.0 1 43.4 0 62.0 6.000 0.0476 0 6 7.000 1 0 3 63 AGTTAGAGTTTGAACGTGTG TTTTTTATATCGTGTGGTGA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44939916 44939916 C CT 69 3 35 29 1 2 C/+1 0.0435 2;2 61.0 1 42.0 0 60.0 6.000 0.0476 0 6 7.000 1 0 3 63 AGTTAGAGTTTGAACGTGTG TTTTTTATATCGTGTGGTGA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44907020 44907020 A T 74 2 29 42 0 2 A/T 0.0270 2;0 55.0 0 39.5 1 60.0 4.000 0.0303 0 0 3.000 1 1.0 2 66 CAGGCCTCAGTTTCTCCTTA AGGTTGTTTCAGCTCCAGGA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44907101 44907101 T A 69 41 13 15 17 24 T/A 0.5942 2;2 37.7 1 37.8 1 60.0 9.250 0.5873 0 0 1.000 1 1.6 37 63 TCTGCCACCCCAGCCACCAA GTCTGGATTAAGGAAAACTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44907098 44907099 CA C 72 2 29 41 2 0 A/-1 0.0278 2;0 65.0 0 42.0 0 60.0 4.000 0.0312 0 1 2.000 1 2.5 2 64 GCCTCTGCCACCCCAGCCAC ATGTCTGGATTAAGGAAAAC 20:44885702-44969115 Deletion 0 0 @@ -507,7 +507,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44906628 44906998 G 72 2 36 31 NA24385_chr_20_44885701_44969115 testbed 20 44906627 44906627 A G 67 2 35 29 0 2 A/G 0.0299 2;0 7.0 0 42.0 0 60.0 4.000 0.0339 0 2 2.000 1 1.0 2 59 GGGGGCGAAAGTGTAGATCC GGCAGAAGGTAGGGGGCAGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44939455 44939456 TA T 64 3 30 31 2 1 A/-1 0.0469 2;2 12.3 1 40.8 1 60.0 6.000 0.0508 0.0312 1 2.000 1 0 3 59 CACTCTGGTCTGGGAGAAGG AGCTGGGACTCCTGCTGCAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44906523 44906752 AGGGGGCGGTAGCTGGAGAGGAAGGCAGGGCCGAGGGAGGGCTTTCTTAAAGGAGAGAGTTGGGTGTGCTCAGTGCTAATGAGAGGGGGCGAAAGTGTAGATCCAGGCAGAAGGTAGGGGGCAGGAGGCGTTGGCCGAGACAAGAGGAAGGAAGGATCCTCCGTGATGACAGGTGACAAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGCGAAAGGGTGATCAAGGGGT A 105 4 54 51 4 0 G/-229 0.0381 2;0 288.0 1 39.0 1 60.0 8.000 0.0396 0.0190 6 1.000 1 0 4 101 GGCTTTGAAGGGAAGGAGGG GGGGGCCCCAGGGAGCTGGG 20:44885702-44969115 Deletion 0 2-2-2 -NA24385_chr_20_44885701_44969115 testbed 20 44906523 44906523 A AG 104 9 46 43 5 4 A/+1 0.0865 2;2 38.0 1 40.3 1 61.6 18.000 0.1125 0 5 6.000 1 1.3 9 80 GGCTTTGAAGGGAAGGAGGG GGGGGCGGTAGCTGGAGAGG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44906523 44906523 A AG 104 9 46 43 5 4 A/+1 0.0865 2;2 37.0 1 39.2 1 60.0 18.000 0.1125 0 5 6.000 1 1.3 9 80 GGCTTTGAAGGGAAGGAGGG GGGGGCGGTAGCTGGAGAGG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44906572 44906654 AAGGAGAGAGTTGGGTGTGCTCAGTGCTAATGAGAGGGGGCGAAAGTGTAGATCCAGGCAGAAGGTAGGGGGCAGGAGGCGTT TATCTGTACTCAGTCAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAGTC 97 3 42 51 3 0 A/-83iTATCTGTACTCAGTCAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAGTC 0.0309 2;0 70.3 1 36.3 1 60.0 6.000 0.0357 0.0309 0 2.000 1 2.0 3 84 GCCGAGGGAGGGCTTTCTTA GGCCGAGACAAGAGGAAGGA 20:44885702-44969115 Complex 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44906559 44906560 GA G 98 2 43 50 1 1 A/-1 0.0204 2;2 11.5 1 42.0 1 60.0 4.000 0.0233 0.0102 0 6.000 1 0 2 86 AGAGGAAGGCAGGGCCGAGG GGGCTTTCTTAAAGGAGAGA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44906583 44906583 T TGGGTGTGCTCAGTGCTAATGAGAGGGGGCGAAAGTGTAGATCCAGGCAGAAGGTAGGGGGCAGGAGGCGTTGGCCGAGACAAGAGGAAGGAAGGATCCTCCGTGATGACAGGTGACAAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGCGAAAGGGTGATCAAGGGGTGGGGGCCCCAGGGAGCTGGGAACAGAACCCAGGCCTCTCCCCCTGGGCTCCTAGGCACTCCCTCTGGGGGACCACCCTCCAGTTCTACACTTCTGGGGGCAGTCCCCAGCTTTGCTTCTCGTGCTGGCCACCAGCCCAGCCTGGGCTTGCAGGCCCTTCAGCTGGCCTCAGGGCCCAGGCAGCCTCTTGGTTCTGTGCATCTCTGGTGCATTGCATGACCTTCAGTGAGTCCTCCCCACCTCTGCCCCAGGCCTCAGTTTCTCCTTAAAGGTTGTTTCAGCTCCAGGAGACTAGAACTCCATGGTTCAATGCCCCTTCCAGTCCTGCCTCTGCCACCCCAGCCACCAATGTCTGGATTAAGGAAAACTCAGGATGGGCCTTCTGACCTAGAGA 84 2 38 43 2 0 T/+562 0.0238 2;0 30.0 1 33.1 1 60.0 4.000 0.0282 0.0238 70 2.000 2 1.5 2 71 GCTTTCTTAAAGGAGAGAGT GGGTGTGCTCAGTGCTAATG 20:44885702-44969115 Insertion 0 2-0-0 @@ -518,18 +518,18 @@ NA24385_chr_20_44885701_44969115 testbed 20 44939622 44939622 T G 71 2 28 41 2 0 NA24385_chr_20_44885701_44969115 testbed 20 44939595 44939596 CA C 73 2 30 41 0 2 A/-1 0.0274 2;0 27.0 0 42.0 0 60.0 4.000 0.0286 0 0 5.000 1 1.5 2 70 CGTGGGCAAGCCACTTCCCC GCATTGATGTGAAGAGAAAA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44906817 44906817 T C 92 2 40 49 0 2 T/C 0.0217 2;0 5.5 1 29.5 1 60.0 4.000 0.0247 0.0109 0 5.000 1 2.0 2 81 GGGCTCCTAGGCACTCCCTC GGGGGACCACCCTCCAGTTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44940971 44941317 G 132 3 70 59 3 0 G/ 0.0227 2;0 29.0 1 41.4 1 60.0 6.000 0.0254 0.0227 0 2.000 2 1.3 3 118 GTCCTCATCCCGCACTCTCA ACCCTAGCCCCTCCCCAGAG 20:44885702-44969115 INV 0 3-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44908261 44908261 T TA 74 3 31 39 0 3 T/+1 0.0405 2;0 14.4 0 43.1 0 61.6 6.000 0.0429 0 5 6.000 1 2.4 3 70 ATATAATGTATGCTAAAGTC AAAAATGGTCTGCAGTGATA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44908261 44908261 T TA 74 3 31 39 0 3 T/+1 0.0405 2;0 14.0 0 42.0 0 60.0 6.000 0.0429 0 5 6.000 1 2.4 3 70 ATATAATGTATGCTAAAGTC AAAAATGGTCTGCAGTGATA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44940996 44940996 T C 130 2 70 58 2 0 T/C 0.0154 2;0 10.5 1 35.4 1 60.0 4.000 0.0179 0.0077 0 4.000 1 3.0 2 112 CCGTTTCCCTTTCTCTCTTC CCCCACACTTCCTTCTCCTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44940844 44940844 A ATGTCTGTCTCCCTCTCTCTGTTTCTCTGTCTCTTCCCATCTCTGTTTCTTCGGGGCACCCAGTCTCCCTCTGTCTCCCTCTTGCCTGTCCTATTCTGGTTCTCTCTGTCCTCATCCCGCACTCTCAGTGCCCCGTTTCCCTTTCTCTCTTCTCCCCACACTTCCTTCTCCTCTTCCTCCTTCCCTCCTTCCTTCCCACTCCCCTCCTCCCGCTCCCT 83 3 22 37 1 2 A/+217 0.0361 2;2 51.7 1 38.5 1 60.0 6.000 0.0545 0.0361 70 2.000 1 0.7 3 55 GTCCTGTTCTCTCTGCCTCC TGTCTGTCTCCCTCTCTCTG 20:44885702-44969115 Insertion 0 3-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44908035 44908035 A G 106 54 29 23 20 34 A/G 0.5094 2;2 39.6 1 39.7 1 60.0 17.000 0.5000 0.0189 0 2.000 1 2.4 51 102 CATCTTACGGGTCCATCGCT AGGGAGTGGACAAATAAAAT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44941290 44941290 C CG 78 2 45 29 1 1 C/+1 0.0256 2;2 26.9 1 43.4 0 62.0 4.000 0.0274 0 6 7.000 1 0.5 2 73 GGACGGGGCCGCCAGCCCGC GGGGGGCGTAGGGAGCAGCC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44941290 44941290 C CG 78 2 45 29 1 1 C/+1 0.0256 2;2 26.0 1 42.0 0 60.0 4.000 0.0274 0 6 7.000 1 0.5 2 73 GGACGGGGCCGCCAGCCCGC GGGGGGCGTAGGGAGCAGCC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44908308 44908308 C T 63 39 8 16 23 16 C/T 0.6190 2;2 39.0 1 38.5 1 60.0 12.000 0.6102 0 0 1.000 1 1.8 36 59 AAGCTCATCCTAGGAGCTGG GCTGAGGAAGTGGGAGGGGA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44908411 44908411 A T 50 2 23 25 0 2 A/T 0.0400 2;0 6.0 0 42.0 0 60.0 4.000 0.0417 0 0 1.000 1 1.5 2 48 AATGGATTCAGGTATTTCTT TAAAATTAAAATTATTTTTA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44908378 44908378 T A 50 3 24 21 0 3 T/A 0.0600 2;0 7.0 0 42.0 0 60.0 6.000 0.0652 0 0 1.000 1 2.3 3 46 CAGCTTCATCGACAGTGCCC GATTTCTAAGAGAATGGATT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44941139 44941139 T A 96 2 54 39 0 2 T/A 0.0208 2;0 67.0 0 34.5 1 60.0 4.000 0.0290 0 0 2.000 1 3.5 2 69 CCCGCTTTGTCTGTGGGAGC GGAAGTTAAAAGCTTTTCCG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44940439 44940439 G GGTGTGT 69 14 10 12 8 6 G/+6 0.2029 2;2 49.1 1 39.1 1 53.2 28.000 0.3590 0 33 19.000 2 0.6 14 39 TTGAGCAGGGGTCAGTGAAG GTGTGTGTGTGTGTGTGTGT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44940439 44940439 G GGTGTGT 69 14 10 12 8 6 G/+6 0.2029 2;2 41.9 1 33.4 1 45.4 28.000 0.3590 0 33 19.000 2 0.6 14 39 TTGAGCAGGGGTCAGTGAAG GTGTGTGTGTGTGTGTGTGT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44907724 44907724 G A 98 2 52 44 2 0 G/A 0.0204 2;0 62.0 0 37.0 1 60.0 4.000 0.0217 0 0 3.000 1 4.0 2 92 GTGAATCCTGTGTCTCTCTG GTGGACCTCAGCGGTGTCTG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44907715 44907715 G GTC 88 2 50 33 1 1 G/+2 0.0227 2;2 13.5 1 41.6 1 62.4 4.000 0.0247 0.0114 7 4.000 2 1.6 2 81 TGGCTCTAAGTGAATCCTGT TCTCTCTGGGTGGACCTCAG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44907715 44907715 G GTC 88 2 50 33 1 1 G/+2 0.0227 2;2 13.0 1 40.0 1 60.0 4.000 0.0247 0.0114 7 4.000 2 1.6 2 81 TGGCTCTAAGTGAATCCTGT TCTCTCTGGGTGGACCTCAG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44940343 44940343 A T 62 4 26 32 4 0 A/T 0.0645 2;0 6.0 0 42.0 0 60.0 8.000 0.0741 0 1 1.000 1 1.5 4 54 AAATGTCTCCTGAAGGGCAA GTCACCCCCAGTTGAGAGCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44940313 44940313 T A 62 2 32 28 0 2 T/A 0.0323 2;0 7.0 0 42.0 0 60.0 4.000 0.0351 0 0 1.000 1 1.0 2 57 TGACAACTAAAAATGTGTCC GACATTGCCAAATGTCTCCT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44907944 44907944 A G 103 54 27 22 29 25 A/G 0.5243 2;2 37.2 1 39.7 1 60.0 26.000 0.5200 0.0485 0 1.000 1 2.9 52 100 GTCAGTGTGAGAGAAATATC GCATGTGTAGCAGGAGGTGT 20:44885702-44969115 SNV 0 0 @@ -552,13 +552,13 @@ NA24385_chr_20_44885701_44969115 testbed 20 44909266 44909267 GT G 63 3 32 27 3 NA24385_chr_20_44885701_44969115 testbed 20 44941859 44941860 TA T 69 2 39 27 1 1 A/-1 0.0290 2;2 30.0 1 42.0 0 60.0 4.000 0.0323 0 1 3.000 1 0 2 62 CCGCTGGGGAAACCAAGGTT AGGGGAGAAAGTGACTTGCT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44941847 44941848 GA G 60 3 35 22 3 0 A/-1 0.0500 2;0 51.0 0 42.0 0 60.0 6.000 0.0566 0 2 4.000 1 0 3 53 GTCCCCATGCTACCGCTGGG AACCAAGGTTTAAGGGGAGA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44909157 44909157 G A 55 2 32 21 2 0 G/A 0.0364 2;0 6.0 0 42.0 0 60.0 4.000 0.0385 0 3 6.000 1 1.0 2 52 TCCTCTGAGCACCTTCTCAG GGGGCTGGCAGTCTCCAGGC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44941948 44941948 C CT 81 2 49 29 0 2 C/+1 0.0247 2;0 46.2 0 40.6 1 61.6 4.000 0.0267 0 5 6.000 1 1.5 2 75 TCCTTCCTCTCCTTTCCCCT TTTTTCCTCAAGGAAGTGGG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44941948 44941948 C CT 81 2 49 29 0 2 C/+1 0.0247 2;0 45.0 0 39.5 1 60.0 4.000 0.0267 0 5 6.000 1 1.5 2 75 TCCTTCCTCTCCTTTCCCCT TTTTTCCTCAAGGAAGTGGG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44909480 44909480 G C 63 62 0 0 35 27 C/C 0.9841 0;2 31.6 1 40.1 1 60.0 61.000 0.9839 0.0635 1 1.000 1 2.4 61 62 GCTCTCTTTCCCTCTTCCAA AGCTTCTCCAACTCTGAGCA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44909469 44909469 C T 63 57 0 0 33 24 T/T 0.9048 0;2 33.6 1 39.4 1 60.0 56.000 0.9032 0 0 3.000 1 2.5 56 62 TGTTATGTCCTGCTCTCTTT CCTCTTCCAAGAGCTTCTCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44909468 44909469 TC T 63 6 0 0 2 4 T/-1 0.0952 0;2 5.8 1 35.6 1 60.0 12.000 0.0968 0.0476 2 3.000 1 1.7 6 62 ATGTTATGTCCTGCTCTCTT CCTCTTCCAAGAGCTTCTCC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44942228 44942228 C G 60 2 33 25 2 0 C/G 0.0333 2;0 12.0 0 42.0 0 60.0 4.000 0.0351 0 0 1.000 1 2.5 2 57 CAAGCCTTGGGAACTTGGCA TCCATCCAGGGCCTAAGCAC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44909413 44909413 C T 66 3 31 32 3 0 C/T 0.0455 2;0 20.0 1 30.3 1 60.0 6.000 0.0462 0 0 1.000 1 1.3 3 65 AAGACCTAGTTTGCAGGTTG TGCGGGCAAAATGTGTATGG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44942177 44942177 G GA 77 2 29 45 1 1 G/+1 0.0260 2;2 8.2 1 42.6 1 61.6 4.000 0.0278 0.0130 5 6.000 1 0 2 72 GCTGGGGTGGGGCCAGGTGG AAAAACAGGAGCCCAGCACC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44942177 44942177 G GA 77 2 29 45 1 1 G/+1 0.0260 2;2 8.0 1 41.5 1 60.0 4.000 0.0278 0.0130 5 6.000 1 0 2 72 GCTGGGGTGGGGCCAGGTGG AAAAACAGGAGCCCAGCACC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44942209 44942216 AAGCCTTG CAAGGCTT 74 6 31 37 0 6 C/-10iCCCAAGGCTT 0.0811 2;0 20.3 1 41.2 1 60.0 12.000 0.0845 0 0 3.000 1 1.3 6 71 CCCAGCACCTGCCAAGTTCC GGAACTTGGCACTCCATCCA 20:44885702-44969115 Complex 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44942154 44942154 T TGGGCTGGGGTGGGGCCAGGTGGGAAAAACAGGAGCCCAGCACCTGCCAAGTTCCAAGCCTTGGGAACTTGGCACTCCATCCAGGGCCTAAGCACAACGGCAGCACTATGGACAGTGGCTATGGCCCAGGCCAGGATCCAGCTTTACACCGGAAGCTCTCCCGCAGCCTGGTGGGCCCGCCCTGCTTCTGGGCATGACATCTCAGCCCACATCCCAGCTCCCTAACCCCGCTCCTGTAACCTCTGTCTGGGGCTAGGTCCCAACCTTCTGTCTCCTACACACACTCTGTCTCTTCTCTCTCTCTCTCTTTGGACCCAGATCCAAAGCCAGTGGGAAAGACGCGCCTCCCTCCTTTCCCTCTCCCTACCTGTCAGCCCTAGACAGCTTCTGCAGCCCTGAGGCCTGACACTGCAGGTGGCTGCGTGGAGATGGGAATAAGAGTCCCCTGAGCTTCCCTGAAAGTCCCTAAAGACACAGCAGAGTACAGCAGAAACTGAGCACTTGGACCTTCCCTCTTGAGCCCCCTTCCCTGGGGTGGTGGGGTGAGACAGCCCTACCACACTCCCCACACACACTTCAAACACCGACTCTCCCTGAATTATTCACCTGCCTCTCCCCAGGGCTGCTGCAGAGCGCCCAGCCCAGGTGCTGAGGAGGAAAAAAGCAGAAAGGCCCATTAAATTTAAACACCGCTGAGGATTGTCAGATGTG 79 3 34 45 3 0 T/+710 0.0380 2;0 36.0 1 39.1 1 60.0 6.000 0.0395 0.0380 70 4.000 1 0 3 76 AAAGGCTACTTTGTCTGTGG GGGCTGGGGTGGGGCCAGGT 20:44885702-44969115 Insertion 0 3-5-1 NA24385_chr_20_44885701_44969115 testbed 20 44941445 44941445 G T 90 47 17 25 18 29 G/T 0.5222 2;2 32.8 1 33.1 1 60.0 3.700 0.4805 0.0222 0 4.000 1 3.5 37 77 GGACCGCAGGGAGGGGGAGG GACTACTTGGGGAGGGGACT 20:44885702-44969115 SNV 0 0 @@ -567,7 +567,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44941463 44941465 ACT GC 82 2 15 21 NA24385_chr_20_44885701_44969115 testbed 20 44941565 44941565 G GC 72 72 0 0 31 41 +1/+1 1.0000 0;2 41.1 1 39.2 1 60.0 17.000 1.0000 0.1250 0 1.000 1 1.0 68 68 GAGCCACAGGCGCCGAGGCC TGCGCCCTTAAGCACCTCCA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44908749 44908749 T TGCTTCAAGCTCTGGGGTAAAAACAACAGCCCGGGTGCGGTAGCTCACACCTGTAATCCCAGCACATTGAGAGGCCGAGGTGGGCATATCACTTGAGCTCAGGTGTTTGAGACCAGCCTGATCAATATGGCAAAACCCCATCTCTACTAAAAATACAAGAATTAGCTAGGTGTGGTGGTGTGGGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTG 59 2 26 32 2 0 T/+254 0.0339 2;0 21.0 1 39.9 1 60.0 4.000 0.0364 0.0339 70 2.000 1 1.5 2 55 GGCTGGGCCTCTTTTTCTGC GCTTCAAGCTCTGGGGTAAA 20:44885702-44969115 Insertion 0 2-2-2 NA24385_chr_20_44885701_44969115 testbed 20 44941353 44941353 A C 91 3 41 47 3 0 A/C 0.0330 2;0 10.7 1 23.7 1 60.0 2.000 0.0267 0.0220 0 1.000 1 4.0 2 75 CAGAGGGACCCGGGACCCGA CGAGGGCGCCCCACCTGGGA 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44908549 44908549 A AT 57 2 30 22 1 1 A/+1 0.0351 2;2 49.2 1 44.0 0 62.8 4.000 0.0426 0 8 9.000 1 2.1 2 47 CATTTTCTAGTTGACGGAGC TTTTTTTTAACCCATGTGAA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44908549 44908549 A AT 57 2 30 22 1 1 A/+1 0.0351 2;2 47.0 1 42.0 0 60.0 4.000 0.0426 0 8 9.000 1 2.1 2 47 CATTTTCTAGTTGACGGAGC TTTTTTTTAACCCATGTGAA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44941435 44941436 GA G 92 3 36 53 3 0 A/-1 0.0326 2;0 9.0 1 38.7 1 60.0 6.000 0.0357 0.0109 0 8.000 1 2.3 3 84 GGGGCCGACGGGACCGCAGG GGGGGAGGGGACTACTTGGG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44941438 44941438 G C 90 48 19 23 19 29 G/C 0.5333 2;2 34.4 1 38.9 1 59.4 23.000 0.5412 0 0 5.000 1 3.6 46 85 GCCGACGGGACCGCAGGGAG GGGAGGGGACTACTTGGGGA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44908985 44908985 G A 67 2 26 38 1 1 G/A 0.0299 2;2 22.0 0 42.0 0 26.0 4.000 0.0308 0 3 3.000 1 3.0 2 65 AGGAGAATCGCTTGAACCTG GAGGTGGAGGTTGCAGTGAG 20:44885702-44969115 SNV 0 0 @@ -597,11 +597,11 @@ NA24385_chr_20_44885701_44969115 testbed 20 44942498 44942499 CT C 52 2 22 26 0 NA24385_chr_20_44885701_44969115 testbed 20 44909751 44909752 CT C 80 2 44 34 0 2 T/-1 0.0250 2;0 38.0 0 42.0 0 60.0 4.000 0.0256 0 2 3.000 1 0 2 78 GGGGCCATCTTGAACTCTAC TTAGGGCAGTAGGGGGCCAT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44942512 44942512 T A 57 2 25 29 2 0 T/A 0.0351 2;0 8.0 0 42.0 0 60.0 4.000 0.0426 0 0 2.000 2 1.0 2 47 ACGCGCCTCCCTCCTTTCCC CTCCCTACCTGTCAGCCCTA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44909699 44909699 C A 79 2 37 40 2 0 C/A 0.0253 2;0 42.5 1 42.0 0 60.0 4.000 0.0256 0 1 2.000 1 4.0 2 78 CTCACAAGCAAAGGTCTTCC AATCTCAATTGATTTCTGGG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44909805 44909805 A ATAGACTTCTTTCAGAAGTCTATT 75 4 45 23 1 3 A/+23 0.0533 2;2 14.2 1 40.8 1 63.2 8.000 0.0588 0.0533 9 3.000 1 1.6 4 68 CAAGGGAGTGACATGTCTAA TAGACTTCTGAAAGAACATG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44909805 44909805 A ATAGACTTCTTTCAGAAGTCTATT 75 4 45 23 1 3 A/+23 0.0533 2;2 13.5 1 38.8 1 60.0 8.000 0.0588 0.0533 9 3.000 1 1.6 4 68 CAAGGGAGTGACATGTCTAA TAGACTTCTGAAAGAACATG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44909820 44909820 A AACATGTTGTCTGTGTGGAGGGTGGCTTTGGAAGGGAAGCCCAGCGGTAGAGAGACTGCCTGGAGGCAGGGAGGCCTTGAGGAGGCTGTGGTGAACAGTTCAGGTGACAGATGGGGCCCTGAGATCCCTTCTAATCCTGTGAGATGCCTGGGGGACTGGAGGAGGCCAGGGAAGAGTAGAGTGGCTGGACTGGATTTTGAAAGATGCTAGGATTTTCTTGGAGATTGAAAGGAAACCTGTGATGTATATG 75 2 45 27 0 2 A/+249 0.0267 2;0 46.0 1 41.9 1 60.0 4.000 0.0290 0.0267 70 2.000 1 0 2 69 TCTAAATAGACTTCTGAAAG ACATGTTGTCTGTGTGGAGG 20:44885702-44969115 Insertion 0 2-6-2 NA24385_chr_20_44885701_44969115 testbed 20 44909815 44909816 GA G 73 2 43 27 2 0 A/-1 0.0274 2;0 49.0 0 42.0 0 60.0 4.000 0.0299 0 2 3.000 1 0 2 67 ACATGTCTAAATAGACTTCT AAGAACATGTTGTCTGTGTG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44942532 44942532 A AGACAGCTTCTGCAGCCCTGAGGCCTGACACTGCAGGTGGCTGCGTGGAGATGGGAATAAGAGTCCCCTGAGCTTCCCTGAAAGTCCCTAAAGACACAGCAGAGTACAGCAGAAACTGAGCACTTGGACCTTCCCTCTTGAGCCCCCTTCCCTGGGGTGGTGGGGTGAGACAGCCCTACCACACTCCCCACACACACTTCAAACACCGACTCTCCCTGAATTATTCACCTGCCTCTCCCCAGGGCTGCTGCAGAGCGCCCAGCCCAGGTGCTGAGGAGGAAAAAAGCAGAAAGGCCCATTAAATTTAAACACCGCTGAGGATTGTCAGATGTGAGGTTCTATTCCTGGCCTAGAGAAGAGCCGCCAGTGGGAAGGGAAAGGGGATCTGCAAGGGGATGAGGACGAGGGACCCACCCCGGGCCGAGTGACCTGCTGAGCACCAGGAGGGCTGGGGCCAACATGCCAGGGAACCCGGACCTTCCTTCACCTGAAGGTTCTCACCCATGAGG 60 3 32 28 1 2 A/+508 0.0500 2;2 19.0 1 31.5 1 56.7 6.000 0.0545 0.0500 70 3.000 1 0 3 55 TCTCCCTACCTGTCAGCCCT GACAGCTTCTGCAGCCCTGA 20:44885702-44969115 Insertion 0 3-3-1 -NA24385_chr_20_44885701_44969115 testbed 20 44909763 44909763 A AG 85 7 43 34 4 3 A/+1 0.0824 2;2 28.0 1 39.5 1 61.6 14.000 0.0897 0.0353 5 6.000 1 0.4 7 78 AACTCTACCTTTAGGGCAGT GGGGGCCATTGAAAGTTTGA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44909763 44909763 A AG 85 7 43 34 4 3 A/+1 0.0824 2;2 27.3 1 38.4 1 60.0 14.000 0.0897 0.0353 5 6.000 1 0.4 7 78 AACTCTACCTTTAGGGCAGT GGGGGCCATTGAAAGTTTGA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44909574 44909574 T G 83 2 44 37 0 2 T/G 0.0241 2;0 30.0 1 29.5 1 60.0 4.000 0.0263 0.0120 1 1.000 1 3.5 2 76 CCACAGTGTCCAACACAAAG AGGTTCTCAGGAAAGTCTGT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44942446 44942448 TTC T 44 3 16 25 1 2 T/-2 0.0682 2;2 37.7 1 40.3 1 60.0 6.000 0.0811 0 13 7.000 2 0.7 3 37 TCCTACACACACTCTGTCTC TCTCTCTCTCTCTTTGGACC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44909659 44909659 T TAACTGGGGTAGCAGACCTACTCACAAGCAAAGGTCTTCCCAATCTCAATTGATTTCTGGGGTCAGCTCACTGGGGCCATCTTGAACTCTACCTTTAGGGCAGTAGGGGGCCATTGAAAGTTTGATCAAGGGAGTGACATGTCTAAATAGACTTCTGAAAGAACATGTTGTCTGTGTGGAGGGTGGCTTTGGAAGGGAAGCCCAGC 76 6 30 44 3 3 T/+205 0.0789 2;2 45.3 1 39.9 1 60.0 12.000 0.0800 0.0789 70 1.000 1 0 6 75 CAGGAAAAGTCACCACAATC AACTGGGGTAGCAGACCTAC 20:44885702-44969115 Insertion 0 6-6-2 @@ -615,67 +615,67 @@ NA24385_chr_20_44885701_44969115 testbed 20 44911305 44911305 C T 54 2 26 26 0 2 NA24385_chr_20_44885701_44969115 testbed 20 44943939 44943940 TA T 63 2 25 36 2 0 A/-1 0.0317 2;0 48.0 0 42.0 0 60.0 4.000 0.0345 0 2 3.000 1 0 2 58 ACACCACAAAAAAGAAATGA AACAATACAAATCAGGGCTT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44944367 44944368 AT A 54 2 22 30 2 0 T/-1 0.0370 2;0 20.0 0 42.0 0 60.0 4.000 0.0400 0 1 2.000 1 0 2 50 GCAAATGGCACTTCACCCCT TCCATCTTGCTGTGACATCA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44911564 44911564 T TAGGGACAGGAGTGGGAGCAGCTGGCCAGGTCTAGGGGAGCCTGGAGTCCAGAGACCCAGGTTCATGGCCCAGGGCTTCCACAGACTCTGTGCAGCTCTCGCCTCTTCCTGGCCCTCCTCCACTGCCATCCTTTGCTTCCACATCCTTTCATTTTTGTTTACAGCATGCAGTACGGCATGGGGTGCCCCCCACATCCAGTTATGGCAAGAAGCATAACTGTCTCCATTTTACAGAGGAGATGCCTGGATGTACCTCTGGTCACACAAGTGGTGCAAGCTCGAGTTGGGGTTGGAACCTATGTCTTCAGCCTCCAAGTGCACTGGGAATGCATTCTGGGAGCAGGGGGAGGTCTGGAGTCTGAGTAGAGTGGACAGGACATGAGCTCCAGAATTACACAGACTCAGATTCCGATTCCAGCTGCGTGACCTGGGACACGTTCCCTAACATCTCTGGTCTTCCACTTTCCCATCCGTACACTGCAGTAATGATAGGAACTGCCCCCGGGGCTATGGTG 65 2 19 21 1 1 T/+514 0.0308 2;2 57.5 1 35.8 1 60.0 4.000 0.0476 0.0308 70 1.000 1 1.5 2 42 GAAGGCGGGCTCTTCAAAGC AGGGACAGGAGTGGGAGCAG 20:44885702-44969115 Insertion 0 2-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44911389 44911389 C CG 78 3 37 33 2 1 C/+1 0.0385 2;2 62.3 1 43.1 0 61.6 6.000 0.0423 0 5 6.000 1 0 3 71 TCCCCCAGTGAGTTCTCCCC GGGGGAGGGAAGGGTGGGTG 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44911389 44911389 C CGG 78 2 37 33 0 2 C/+2 0.0256 2;0 47.2 0 43.1 0 61.6 4.000 0.0282 0 5 7.000 1 0 2 71 TCCCCCAGTGAGTTCTCCCC GGGGGAGGGAAGGGTGGGTG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44911389 44911389 C CG 78 3 37 33 2 1 C/+1 0.0385 2;2 60.7 1 42.0 0 60.0 6.000 0.0423 0 5 6.000 1 0 3 71 TCCCCCAGTGAGTTCTCCCC GGGGGAGGGAAGGGTGGGTG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44911389 44911389 C CGG 78 2 37 33 0 2 C/+2 0.0256 2;0 46.0 0 42.0 0 60.0 4.000 0.0282 0 5 7.000 1 0 2 71 TCCCCCAGTGAGTTCTCCCC GGGGGAGGGAAGGGTGGGTG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44910766 44910766 T A 73 3 29 41 0 3 T/A 0.0411 2;0 24.0 0 42.0 0 60.0 6.000 0.0423 0 1 1.000 1 1.0 3 71 ATGAGTCTGATGATCATGCT CATTTATTCATTGAAAAAAT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44910779 44910779 G GA 78 7 34 35 3 4 G/+1 0.0897 2;2 49.2 1 42.7 1 62.0 14.000 0.0946 0 6 7.000 1 0.3 7 74 TCATGCTTCATTTATTCATT AAAAAATAATTATTGAGTGC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44910779 44910779 G GA 78 7 34 35 3 4 G/+1 0.0897 2;2 47.6 1 41.3 1 60.0 14.000 0.0946 0 6 7.000 1 0.3 7 74 TCATGCTTCATTTATTCATT AAAAAATAATTATTGAGTGC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44910815 44910816 CA C 81 3 36 40 2 1 A/-1 0.0370 2;2 10.3 1 31.9 1 60.0 6.000 0.0380 0.0247 2 3.000 1 0.3 3 79 AGTGCCTGCACCATGGTTGG AAGAGGGAAGAGAATGGTGG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44910815 44910815 C T 82 2 40 40 0 2 C/T 0.0244 2;0 34.0 0 42.0 0 60.0 4.000 0.0250 0 1 3.000 1 1.5 2 80 AGTGCCTGCACCATGGTTGG AAAGAGGGAAGAGAATGGTG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44910638 44910638 C A 108 2 56 50 0 2 C/A 0.0185 2;0 6.0 0 39.5 1 60.0 4.000 0.0189 0 1 3.000 2 1.0 2 106 GTATCTTACCGAAATTCACA AGCTGGCAGAGCAGGAGCTG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44910643 44910643 G GGCAGAGCAGGAGCTGGATCTAAGGTCCACTATGACAGCTTTCTCCTATGGACAGGATATGAGAAAGGAGTTTACAGTTCATCATAAAAATCACAGCTCCTGGCTTTTGAATGCTTACTATGT 104 3 32 38 1 2 G/+122 0.0288 2;2 72.7 1 51.2 1 78.8 6.000 0.0423 0.0288 48 2.000 1 0 3 71 TTACCGAAATTCACACAGCT GCAGAGCAGGAGCTGGATCT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44910643 44910643 G GGCAGAGCAGGAGCTGGATCTAAGGTCCACTATGACAGCTTTCTCCTATGGACAGGATATGAGAAAGGAGTTTACAGTTCATCATAAAAATCACAGCTCCTGGCTTTTGAATGCTTACTATGT 104 3 32 38 1 2 G/+122 0.0288 2;2 55.3 1 39.0 1 60.0 6.000 0.0423 0.0288 48 2.000 1 0 3 71 TTACCGAAATTCACACAGCT GCAGAGCAGGAGCTGGATCT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44943455 44943456 CT C 57 2 32 23 0 2 T/-1 0.0351 2;0 16.0 0 42.0 0 60.0 4.000 0.0385 0 1 3.000 1 0 2 52 CCCTCATGGGTAGCACAGCC TGACTCTCATGCCTGATGGG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44943481 44943481 T TCACAGATGACGACTTCTTAGGAACAGGCAGTTGGATGCCACGGAGAAAGTGCTAGGTATCCTGAGAAGCCTAAGATCTTCCGGCTGTGGCTCCGACCTCAACTCTCTCTGTGTTTTGGGCAGGTCTCTAGTTCTTTCTTTTCTTGGCCTGGGTTTTCTATTGCATAAAATAAAGGAGGAGAGGTGGGGGAAGATTTCATGATGACCAAGAGCCCTTCCGGGGTC 69 4 31 30 2 2 T/+224 0.0580 2;2 27.2 1 39.7 1 60.0 8.000 0.0690 0.0580 70 2.000 1 0 4 58 TCTCATGCCTGATGGGGCCA CACAGATGACGACTTCTTAG 20:44885702-44969115 Insertion 0 4-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44910709 44910709 A AATACCTTCCTTTTTGTCCCCAAAGATACCGATACTGATGAGTCTGATGATCATGCTTCATTTATTCATTGAAAAAATAATTATTGAGTGCCTGCACCATGGTTGGCAAAGAGGGAAGAGAATGGTGGTAGAACAGG 74 2 27 46 2 0 A/+136 0.0270 2;0 49.0 1 41.3 1 60.0 4.000 0.0278 0.0270 70 2.000 1 0 2 72 TATCACTAGACTTGAATACG ATACCTTCCTTTTTGTCCCC 20:44885702-44969115 Insertion 0 2-7-1 -NA24385_chr_20_44885701_44969115 testbed 20 44911103 44911103 G GA 54 2 33 17 0 2 G/+1 0.0370 2;0 73.4 0 43.4 0 62.0 4.000 0.0408 0 6 7.000 1 1.0 2 49 GACAAAATAAAAAGGGAAAG AAAAAATGCCAGCTACAGCC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44911103 44911103 G GA 54 2 33 17 0 2 G/+1 0.0370 2;0 71.0 0 42.0 0 60.0 4.000 0.0408 0 6 7.000 1 1.0 2 49 GACAAAATAAAAAGGGAAAG AAAAAATGCCAGCTACAGCC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44911099 44911099 A T 52 50 1 0 31 19 A/T 0.9615 0;2 44.3 1 33.1 1 60.0 4.000 1.0000 0 0 3.000 1 1.8 40 40 AAGTGACAAAATAAAAAGGG AAGGAAAAAATGCCAGCTAC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44943861 44943861 C T 99 2 48 49 2 0 C/T 0.0202 2;0 54.0 0 39.5 1 60.0 4.000 0.0206 0 0 1.000 1 1.5 2 97 CAGTTGTTAGAGTCTTTTTC AGGAATTTTGCAAGCCAGGT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44910970 44910970 A T 60 2 26 31 2 0 A/T 0.0333 2;0 37.0 0 42.0 0 60.0 4.000 0.0345 0 0 3.000 2 1.0 2 58 CTGGGGAGAAAGGGGTCTCT CACACAGTGGGTGGAGATGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44910933 44910933 G C 46 45 1 0 22 23 G/C 0.9783 0;2 34.0 1 37.6 1 60.0 21.500 0.9773 0.0217 2 6.000 1 1.6 43 44 ATTCCACAGTAGATTTGCCC GGGGGTGGGAGCAGCACTGG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44945129 44945129 C CG 76 2 35 38 0 2 C/+1 0.0263 2;0 41.1 0 43.1 0 61.6 4.000 0.0294 0 5 6.000 1 2.6 2 68 GTGTCAGTTTTAGGAAGTGG GGGGGAGTCAGGGAAATAAC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44945129 44945129 C CG 76 2 35 38 0 2 C/+1 0.0263 2;0 40.0 0 42.0 0 60.0 4.000 0.0294 0 5 6.000 1 2.6 2 68 GTGTCAGTTTTAGGAAGTGG GGGGGAGTCAGGGAAATAAC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44912328 44912328 T A 78 2 38 38 1 1 T/A 0.0256 2;2 48.5 1 39.5 1 60.0 4.000 0.0290 0 0 1.000 1 4.5 2 69 GGTATCCACCCACCCCTGAT CTGAGTTGGATGTCTACCCT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44944948 44944949 GA G 99 3 42 53 0 3 A/-1 0.0303 2;0 25.7 1 42.0 0 44.0 6.000 0.0341 0 1 2.000 1 0 3 88 TACTATGTGGCAAGCACTGA ATACAGGACCAAATGTGGGG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44912138 44912138 G T 76 3 42 31 2 1 G/T 0.0395 2;2 44.7 1 31.7 1 60.0 2.000 0.0278 0 0 1.000 1 3.0 2 72 CTCCATGGAAGCTGGATATT CTGTCATTACCGTAGTTACA 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44944965 44944965 T TG 111 2 51 56 0 2 T/+1 0.0180 2;0 26.5 0 42.8 0 61.2 4.000 0.0198 0 4 5.000 1 0 2 101 TGAGAATACAGGACCAAATG GGGGATGACTCATGGGCTCC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44944965 44944965 T TG 111 2 51 56 0 2 T/+1 0.0180 2;0 26.0 0 42.0 0 60.0 4.000 0.0198 0 4 5.000 1 0 2 101 TGAGAATACAGGACCAAATG GGGGATGACTCATGGGCTCC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44944978 44944979 TG T 102 2 51 49 0 2 G/-1 0.0196 2;0 56.0 0 39.5 1 60.0 4.000 0.0211 0 2 3.000 1 0 2 95 CCAAATGTGGGGATGACTCA GGCTCCTACATCCCAGTTGG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44912523 44912523 G GATCCCACCACAGCCAAATGTTGCCTGACTTCCCTGAGCAGCAGATGAATGAGTCCTCACAGCTAACAAACGGCTGTCGGAAAGGTGGGAGAATGAAGGTAATTAGTCCCCTTAATGCCGACTTCAGACTAATCTTTCACACTTAAGGAAATTGTTCCAATGATTTTCTTATTTTCAGGGGAGCTCGTT 72 3 25 46 1 2 G/+188 0.0417 2;2 33.7 1 38.4 1 60.0 6.000 0.0423 0.0417 70 2.000 1 1.3 3 71 GAGCCAAAGCAGGAGCGGAG ATCCCACCACAGCCAAATGT 20:44885702-44969115 Insertion 0 3-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44945204 44945204 T TCACACCTGTAATCCCAGCACTTTGGAAGGCCGAGGCAGCCTCGGCCTTCCAAAGTGCTGGGATTACAGGTGTGAGCCAC 70 2 19 33 2 0 T/+79 0.0286 2;0 36.8 1 49.5 1 74.2 4.000 0.0435 0.0286 38 2.000 1 0.6 2 46 AGAATGCCAGGTGTGGTGGC CACACCTGTAATCCCAGCAC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44945204 44945204 T TCACACCTGTAATCCCAGCACTTTGGAAGGCCGAGGCAGCCTCGGCCTTCCAAAGTGCTGGGATTACAGGTGTGAGCCAC 70 2 19 33 2 0 T/+79 0.0286 2;0 29.5 1 39.7 1 59.5 4.000 0.0435 0.0286 38 2.000 1 0.6 2 46 AGAATGCCAGGTGTGGTGGC CACACCTGTAATCCCAGCAC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44912400 44912400 A G 70 4 31 34 1 3 A/G 0.0571 2;2 13.0 1 34.2 1 60.0 3.000 0.0508 0.0429 0 1.000 1 1.8 3 59 CAGAGAGCAGCTTCACATGG GTCCCGGGCCTTTCTGCACT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44945228 44945228 G T 72 3 23 46 2 1 G/T 0.0417 2;2 9.0 1 31.7 1 40.0 2.000 0.0308 0 0 2.000 1 1.7 2 65 ACCTGTAATCCCAGCACTTT GAAGGCCGAGGCAGGTGAGT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44912455 44912455 T TCA 80 2 28 44 0 2 T/+2 0.0250 2;0 29.0 0 45.1 0 64.4 4.000 0.0303 0 12 7.000 2 2.7 2 66 TCCATTTCTCTGTTTCTGTC CACACACACACATATGCACA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44912455 44912455 T TCA 80 2 28 44 0 2 T/+2 0.0250 2;0 27.0 0 42.0 0 60.0 4.000 0.0303 0 12 7.000 2 2.7 2 66 TCCATTTCTCTGTTTCTGTC CACACACACACATATGCACA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44912468 44912468 T A 79 3 32 43 1 2 T/A 0.0380 2;2 6.0 1 31.7 1 60.0 2.000 0.0299 0.0253 0 1.000 1 4.0 2 67 TTCTGTCTCACACACACACA ATGCACACACACCACACGCA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44945239 44945301 GCAGGTGAGTCACATTGAGGTCAGGAGTTCGAGACCAGCTTGGCCAACATGGTGAAACCCTGT ACAGGGTTTCACCATGTTGGCCAAGCTGGTCTCGAACTCCTGACCTCAATGTGACTCACCTGC 71 2 24 45 0 2 G/-69iGAGACAGGGTTTCACCATGTTGGCCAAGCTGGTCTCGAACTCCTGACCTCAATGTGACTCACCTGCCTC 0.0282 2;0 37.0 1 42.0 1 59.0 4.000 0.0290 0.0282 0 2.000 2 0 2 69 CAGCACTTTGGAAGGCCGAG CTCTATAAAAATACAAAATT 20:44885702-44969115 Complex 0 2-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44912471 44912471 G GCA 70 2 30 36 1 1 G/+2 0.0286 2;2 41.6 1 39.0 1 63.2 4.000 0.0345 0 9 5.000 2 0 2 58 TGTCTCACACACACACATAT CACACACACCACACGCATAC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44912471 44912471 G GCA 70 2 30 36 1 1 G/+2 0.0286 2;2 39.5 1 37.0 1 60.0 4.000 0.0345 0 9 5.000 2 0 2 58 TGTCTCACACACACACATAT CACACACACCACACGCATAC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44944556 44944556 T C 61 3 39 18 3 0 T/C 0.0492 2;0 47.0 1 31.7 1 60.0 2.000 0.0351 0 0 1.000 1 2.7 2 57 ATCCTCATCTCCTAGAACCT GCCTGGCACATAGTAGGTAC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44911748 44911748 G GC 62 3 31 25 2 1 G/+1 0.0484 2;2 66.1 1 41.7 1 62.0 6.000 0.0545 0 6 7.000 1 0 3 55 CATGCAGTACGGCATGGGGT CCCCCCACATCCAGTTATGG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44911748 44911748 G GC 62 3 31 25 2 1 G/+1 0.0484 2;2 64.0 1 40.3 1 60.0 6.000 0.0545 0 6 7.000 1 0 3 55 CATGCAGTACGGCATGGGGT CCCCCCACATCCAGTTATGG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44911769 44911770 CA C 56 2 29 24 2 0 A/-1 0.0357 2;0 73.0 1 42.0 0 60.0 4.000 0.0400 0 1 2.000 1 1.0 2 50 CCCCCCACATCCAGTTATGG AGAAGCATAACTGTCTCCAT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44944601 44944601 G T 82 3 42 37 3 0 G/T 0.0366 2;0 7.0 0 42.0 0 60.0 6.000 0.0390 0 0 2.000 2 2.0 3 77 TCATTTCAGTGACTAAATGA TGTGACCTTGGGCAAGTCAT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44911664 44911664 G GCCTCTTCCTGGCCCTCCTCCACTGCCATCCTTTGCTTCCACATCCTTTCATTTTTGTTTACAGCATGCAGTACGGCATGGGGTGCCCCCCACATCCAGTTATGGCAAGAAGCATAACTGTCTCCATTTTACAGAGGAGATGCCTGGATGTACCTCTGGTCACACAAGTGGTGCAAGCTCGAGTTGGGGTTGGAACCTATGTCTTCAGCCTCCAAGTGCACTGGGAATGCATTCTGGGAGCAGGGGGAGGTCTGGAGTCTGAGTAGAGTGGA 62 2 26 36 0 2 G/+271 0.0323 2;0 45.5 1 41.6 1 60.0 4.000 0.0351 0.0323 70 1.000 1 0 2 57 ACAGACTCTGTGCAGCTCTC CCTCTTCCTGGCCCTCCTCC 20:44885702-44969115 Insertion 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44911733 44911733 A T 66 2 35 28 2 0 A/T 0.0303 2;0 7.0 0 42.0 0 60.0 4.000 0.0328 0 0 1.000 1 1.0 2 61 CATTTTTGTTTACAGCATGC GTACGGCATGGGGTGCCCCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44911682 44911682 T A 62 2 30 30 0 2 T/A 0.0323 2;0 6.0 0 37.0 1 60.0 4.000 0.0364 0 0 2.000 1 1.5 2 55 TCGCCTCTTCCTGGCCCTCC CCACTGCCATCCTTTGCTTC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44944880 44944880 A AC 84 3 29 42 0 3 A/+1 0.0357 2;0 26.4 1 36.3 1 61.6 2.000 0.0455 0 5 6.000 1 0 2 44 CCCATCTGCTGCTCCCTCCC CCCCCTCCCCACCTCATTCA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44944880 44944880 A AC 84 3 29 42 0 3 A/+1 0.0357 2;0 25.7 1 35.3 1 60.0 2.000 0.0455 0 5 6.000 1 0 2 44 CCCATCTGCTGCTCCCTCCC CCCCCTCCCCACCTCATTCA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44911916 44911917 TG T 66 2 32 32 2 0 G/-1 0.0303 2;0 11.0 0 42.0 0 60.0 4.000 0.0308 0 1 2.000 1 1.0 2 65 TCTGGGAGCAGGGGGAGGTC GAGTCTGAGTAGAGTGGACA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44911910 44911911 GA G 67 3 34 30 0 3 A/-1 0.0448 2;0 14.3 1 30.0 1 60.0 2.000 0.0339 0 0 7.000 1 2.0 2 59 ATGCATTCTGGGAGCAGGGG GGTCTGGAGTCTGAGTAGAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44944649 44944649 A G 84 2 41 41 2 0 A/G 0.0238 2;0 22.5 1 34.5 1 58.0 4.000 0.0256 0 2 2.000 1 2.0 2 78 GCCTGAATTTCAGTTGCCTC ACACCTCACCTGGCAGGATG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44911954 44911954 A G 65 65 0 0 40 25 G/G 1.0000 0;2 36.0 1 40.1 1 59.6 64.000 1.0000 0.0154 0 2.000 1 1.7 64 64 GACAGGACATGAGCTCCAGA TTACACAGACTCAGATTCCG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44913378 44913378 T A 88 2 55 31 2 0 T/A 0.0227 2;0 8.0 0 42.0 0 60.0 4.000 0.0241 0 0 1.000 1 2.5 2 83 AAACTGGAACCCATGGTGTC GACACCAAAGCACGCCATTT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44913402 44913402 T C 96 2 57 37 1 1 T/C 0.0208 2;2 8.0 0 37.0 1 60.0 4.000 0.0235 0 0 3.000 1 1.5 2 85 ACCAAAGCACGCCATTTCTG CCCTCCAGGCCGCCTCTGTG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44946112 44946112 G GC 52 2 32 17 1 1 G/+1 0.0385 2;2 25.3 1 43.4 0 62.0 4.000 0.0465 0 6 7.000 1 0 2 43 TTTGCTGCTTTTTCTCACCG CCCCCCGCAGCTCTCACCTC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44946112 44946112 G GC 52 2 32 17 1 1 G/+1 0.0385 2;2 24.5 1 42.0 0 60.0 4.000 0.0465 0 6 7.000 1 0 2 43 TTTGCTGCTTTTTCTCACCG CCCCCCGCAGCTCTCACCTC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44946134 44946134 C A 45 25 9 11 16 9 C/A 0.5556 2;2 35.9 1 37.5 1 60.0 11.500 0.5610 0 0 2.000 2 1.9 23 41 CCCCCGCAGCTCTCACCTCG GACCTGAACCCCACGAGGGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44945927 44945927 T TTTGAAGCAAAGCAAACATGCGGCCTATTTATGTATCTATAGAGAATTAATTGGCGAGCGGCAGCAAGAAGCAGATTATAAATTAGAATCATTTTCGCCAACTGAAACCCATTCATCTTGCTTCAGAACGGGCCTGTCACCTCCTCCTGACTAATTCCTTTTAAATTTGCTGCTTTTTCTCACCGGCCCCCCGCAGCTCTCACCTCGCGACCTGAACCCCACGAGGGGTGCCTCCGGGAAGGGCCATGGCCAAGCTCTGTGCTTTTCTGAGCCCACTCTCTTCCTCCTCCAGCCTCCTGGAACTCCCCCCGTGCCCCACAGCTGGTCCTGGGCCTGAGCCCATGCCTTGCACTGCTGTCTCTCCTTCCCCTCTGCTCTGGAACCTCCCTCAGCCCCTCTCTGGCTCTGGCCTGTCCCCTGAGAATCCGGCAGGTTGGGCCCCCCACCAGCCTCACCTTGCAGAGGCTCAGGCCAGGCTGGTGGTTAAGGGAAAAGGGCACATGGGGCTGCCATCCGGGGGGACCCTGGGGCACTGGCCACTGCCGCCTGCTTTTGATTCTGGGCTCCACGGGAATCAAAGGGAAGCCACGCTGCTGGGTCCCTGGCAGGTCTGGCTCTGGCTTCTCTCACCTGGAGCCTGTGGAGATGAAAGGCCAGGGCAGGTGCCAGAGGC 72 2 30 30 0 2 T/+672 0.0278 2;0 48.0 1 34.3 1 60.0 4.000 0.0364 0.0278 70 3.000 1 0.5 2 55 AGAGTGTAATGTTTATTACG TTGAAGCAAAGCAAACATGC 20:44885702-44969115 Insertion 0 2-4-2 NA24385_chr_20_44885701_44969115 testbed 20 44946348 44946349 GA G 68 2 31 35 2 0 A/-1 0.0294 2;0 38.0 0 42.0 0 60.0 4.000 0.0312 0 1 2.000 1 0 2 64 GGCTCTGGCCTGTCCCCTGA ATCCGGCAGGTTGGGCCCCC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44913597 44914137 C 122 2 64 56 0 2 C/ 0.0164 2;0 44.0 1 39.6 1 60.0 4.000 0.0174 0.0164 0 3.000 1 1.0 2 115 CCTCACTCCTCATCAGCACT TTGCTAAACATTCCAAAGTG 20:44885702-44969115 INV 0 2-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44946364 44946364 G GC 67 2 34 29 1 1 G/+1 0.0299 2;2 43.4 0 43.4 0 62.0 4.000 0.0323 0 6 7.000 1 0 2 62 CTGAGAATCCGGCAGGTTGG CCCCCCACCAGCCTCACCTT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44946364 44946364 G GC 67 2 34 29 1 1 G/+1 0.0299 2;2 42.0 0 42.0 0 60.0 4.000 0.0323 0 6 7.000 1 0 2 62 CTGAGAATCCGGCAGGTTGG CCCCCCACCAGCCTCACCTT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44913549 44913550 CT C 112 2 59 51 2 0 T/-1 0.0179 2;0 64.0 0 39.5 1 60.0 4.000 0.0198 0 1 2.000 1 2.5 2 101 AAGTCTGAAAGGTGTTTGTC TCTGGGATGGGCACAGATCA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44913552 44913553 CT C 116 2 63 51 0 2 T/-1 0.0172 2;0 71.0 0 39.5 1 60.0 4.000 0.0190 0 0 1.000 1 3.5 2 105 TCTGAAAGGTGTTTGTCCTT GGGATGGGCACAGATCATTT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44946411 44946412 TA T 85 2 57 26 2 0 A/-1 0.0235 2;0 62.0 0 42.0 0 60.0 4.000 0.0238 0 1 2.000 1 1.0 2 84 GCTCAGGCCAGGCTGGTGGT AGGGAAAAGGGCACATGGGG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44913632 44913632 C T 127 4 68 55 4 0 C/T 0.0315 2;0 5.0 0 42.0 0 60.0 8.000 0.0317 0 0 5.000 1 1.0 4 126 ATCTCTGCTCAGGCTTTCCC CGACCCCCAACCTGACCACT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44913628 44913628 T TC 121 2 62 55 2 0 T/+1 0.0165 2;0 56.5 0 43.1 0 61.6 4.000 0.0190 0 5 6.000 1 0 2 105 CTCCATCTCTGCTCAGGCTT CCCCCGACCCCCAACCTGAC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44913628 44913628 T TC 121 2 62 55 2 0 T/+1 0.0165 2;0 55.0 0 42.0 0 60.0 4.000 0.0190 0 5 6.000 1 0 2 105 CTCCATCTCTGCTCAGGCTT CCCCCGACCCCCAACCTGAC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44913514 44913514 G GGAAAATGGGAGGGAAAGTCTGAAAGGTGTTTGTCCTTCTGGGATGGGCACAGATCATTTTTCCCTCACTCCTCATCAGCACTCATTCCTGCCTCTCCATCTCTGCTCAGGCTTTCCCCCGACCCCCAACCTGACCACTGTACCCAGTGCTGATCACTCCTGGTCTTCATTCATCCCCAACAGCCCCAGACTTCTCTTTCGCCCCTGTACCTGGTGGGGACTCATTGGTTCCCATGTTTAGCTGCATTCTGGGAAGCTTGCCTTTGCATGTGCCGTGACCATCCGGTCTGTGGACCAGGTTGCAGCATTGTTAGCAGAACTGCCTGGTGATTGGCTGTGCCAAAGGAGAATTGTTCTCGAACAGGCCAAATGGGAAAACGAGACTTTGT 96 5 54 39 2 3 G/+388 0.0521 2;2 19.4 1 35.8 1 60.0 10.000 0.0532 0.0521 70 3.000 1 0.4 5 94 TAGTGCAGCTTTACTAGGTG GAAAATGGGAGGGAAAGTCT 20:44885702-44969115 Insertion 0 5-2-2 NA24385_chr_20_44885701_44969115 testbed 20 44913524 44913524 A G 101 3 55 41 1 2 A/G 0.0297 2;2 5.0 1 38.7 1 60.0 6.000 0.0316 0.0099 0 3.000 1 1.3 3 95 TTACTAGGTGGGAAAATGGG GGGAAAGTCTGAAAGGTGTT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44913488 44913488 C G 99 2 57 40 2 0 C/G 0.0202 2;0 8.0 0 42.0 0 60.0 4.000 0.0211 0 0 2.000 1 1.0 2 95 CCAGGAGAAACTGTCTCCTG CGAGATAGTGCAGCTTTACT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44945646 44945646 A G 49 2 30 17 2 0 A/G 0.0408 2;0 8.0 0 34.5 1 60.0 4.000 0.0455 0 0 1.000 1 1.0 2 44 CCCAAAGAGTGTGACACAGG GTCTCAAAAGGAAGATGGAG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44945605 44945605 C CATTAGGATTAGGAAGATGGTCCCAAAGAGTGTGACACAGGAGTCTCAAAAGGAAGATGGAGGGACTCCCCTGTGCCTCCCTCCCTCCCTCGCCGCCTGGGCGTCTCCTGAGTGGGGAGCCCGGGCTCGCTGTGGGTGTCGGCAGCTTTTGGATCAGCAATTTATCTCCTGGTGCCTCGAGTTTCCTGGAGCTGGGCACTTCCTCCCCACTCAGCCCCGCTCCCTTGAGCGGCAAAGACAGGTGTGAGGAATTAGCTGTGGGGACTAATGCCGTGACAGGAACCG 59 2 23 23 0 2 C/+284 0.0339 2;0 28.0 1 41.1 1 60.0 4.000 0.0426 0.0339 70 3.000 2 0.5 2 47 CTACCCCTCCCTCCATCTCT ATTAGGATTAGGAAGATGGT 20:44885702-44969115 Insertion 0 2-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44945455 44945455 G GA 39 9 12 14 4 5 G/+1 0.2308 2;2 46.8 1 39.3 1 64.0 8.000 0.2424 0 11 12.000 1 1.5 8 33 AGAGTGAGACTCTCATCTCA AAAAAAAAAAAGACATAAAG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44945455 44945455 G GA 39 9 12 14 4 5 G/+1 0.2308 2;2 43.9 1 36.9 1 60.0 8.000 0.2424 0 11 12.000 1 1.5 8 33 AGAGTGAGACTCTCATCTCA AAAAAAAAAAAGACATAAAG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44912642 44912644 GAC AAT 77 63 1 0 23 40 GAC/AAT 0.8182 0;2 35.4 1 37.7 1 60.0 6.875 0.8871 0.1818 0 1.000 1 2.8 55 62 TAATTAGTCCCCTTAATGCC TTCAGACTAATCTTTCACAC 20:44885702-44969115 Complex 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44913060 44913061 CT C 40 2 17 21 2 0 T/-1 0.0500 2;0 39.0 0 42.0 0 60.0 4.000 0.0513 0 0 3.000 1 1.0 2 39 CCACTGCAGAAAATTCAGAC CAACACCTTCTGGGATCTTT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44945917 44945918 GT G 61 2 30 28 0 2 T/-1 0.0328 2;0 31.0 0 39.5 1 60.0 4.000 0.0385 0 2 3.000 1 0.5 2 52 AGAAGGGGACAGAGTGTAAT TTATTACGTTTGAAGCAAAG 20:44885702-44969115 Deletion 0 0 @@ -691,16 +691,16 @@ NA24385_chr_20_44885701_44969115 testbed 20 44947449 44947449 A T 90 2 46 41 0 2 NA24385_chr_20_44885701_44969115 testbed 20 44947407 44947407 C T 88 2 40 46 0 2 C/T 0.0227 2;0 39.0 0 42.0 0 60.0 4.000 0.0238 0 2 2.000 1 1.0 2 84 GCCGTGAGGACCTGCTGCAG CTCAGTGGTTCTGATTGATC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44947411 44947411 A C 88 2 38 48 2 0 A/C 0.0227 2;0 7.0 0 39.5 1 60.0 4.000 0.0241 0 0 1.000 1 3.0 2 83 TGAGGACCTGCTGCAGCCTC GTGGTTCTGATTGATCCTAC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44947226 44947226 C CCAGCCTGGGTGACAGAGCGAGACTCTGTCACACACAAAAAAATATTGCAATACTTTTGTCCTGGCCAGCCCATGGACCAAATGTTCTCTCCTGCTCCCATTTCACCTACGGACACCTCCTCTTGCCAAGGTCCAAAAACTAAAGGTTGACTCCTCTGGCGGCCGTGAGGACCTGCTGCAGCCTCAGTGGTTCTGATTGATCCTACGTGCTGAACTGAGGGTTAAATATTTTGTTTATCTGCCCTGCTTGCATCCCA 89 2 31 19 0 2 C/+256 0.0225 2;0 44.0 1 41.2 1 60.0 4.000 0.0426 0.0225 70 2.000 2 0 2 47 CAAGATCATGCCACTGCACT CAGCCTGGGTGACAGAGCGA 20:44885702-44969115 Insertion 0 2-2-2 -NA24385_chr_20_44885701_44969115 testbed 20 44947310 44947310 T TTC 71 2 46 22 1 1 T/+2 0.0282 2;2 43.4 1 43.4 0 62.0 4.000 0.0333 0 6 4.000 2 0.5 2 60 GCCAGCCCATGGACCAAATG TCTCTCCTGCTCCCATTTCA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44947310 44947310 T TTC 71 2 46 22 1 1 T/+2 0.0282 2;2 42.0 1 42.0 0 60.0 4.000 0.0333 0 6 4.000 2 0.5 2 60 GCCAGCCCATGGACCAAATG TCTCTCCTGCTCCCATTTCA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44914551 44914875 C 88 3 43 39 3 0 C/ 0.0341 2;0 37.0 1 41.4 1 60.0 6.000 0.0366 0.0341 0 3.000 1 0 3 82 TGACCTTAGGCATGTCTCTT GAAAGGGACATGCTCAAGCT 20:44885702-44969115 INV 0 3-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44913843 44913844 AT A 111 4 40 67 0 4 T/-1 0.0360 2;0 42.0 0 40.8 1 60.0 8.000 0.0381 0 1 2.000 1 0.2 4 105 GTTAGCAGAACTGCCTGGTG TGGCTCTGCCAAAGGAGAAT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44946672 44946672 A C 61 2 17 42 0 2 A/C 0.0328 2;0 12.0 0 27.0 0 60.0 4.000 0.0345 0 1 1.000 1 1.0 2 58 CCTTCCCTTCCTTCTGTCTG GCTGCCGTTGGTCCTTTGAG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44913696 44913696 G GC 110 3 59 47 3 0 G/+1 0.0273 2;0 29.6 0 42.8 0 61.2 6.000 0.0294 0 4 5.000 1 0 3 102 GTCTTCATTCATCCCCAACA CCCCAGACTTCTCTTTCGCC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44913696 44913696 G GC 110 3 59 47 3 0 G/+1 0.0273 2;0 29.0 0 42.0 0 60.0 6.000 0.0294 0 4 5.000 1 0 3 102 GTCTTCATTCATCCCCAACA CCCCAGACTTCTCTTTCGCC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44913717 44913717 C A 103 3 51 49 0 3 C/A 0.0291 2;0 8.0 0 40.3 1 60.0 6.000 0.0297 0 1 4.000 1 3.0 3 101 CCCCAGACTTCTCTTTCGCC CTGTACCTGGTGGGGACTCA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44913682 44913683 AT A 111 4 63 44 4 0 T/-1 0.0360 2;0 56.0 0 42.0 0 60.0 8.000 0.0370 0 1 2.000 1 1.0 4 108 GCTGATCACTCCTGGTCTTC TCATCCCCAACAGCCCCAGA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44913734 44913735 CT C 84 2 42 40 2 0 T/-1 0.0238 2;0 74.0 0 39.5 1 60.0 4.000 0.0253 0 0 2.000 1 1.0 2 79 GCCCCTGTACCTGGTGGGGA CATTGGTTCCCATGTTTAGC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44914168 44914169 CT C 84 2 34 47 2 0 T/-1 0.0238 2;0 12.0 0 39.5 1 60.0 4.000 0.0250 0 1 2.000 1 0 2 80 TTCCAAAGTGCCCAGGACAC TCCCCCCAAACACCCATACA 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44914170 44914170 T TC 84 5 33 44 2 3 T/+1 0.0595 2;2 38.6 1 40.3 1 49.6 10.000 0.0676 0 6 7.000 1 1.4 5 74 CCAAAGTGCCCAGGACACCT CCCCCCAAACACCCATACAC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44914170 44914170 T TC 84 5 33 44 2 3 T/+1 0.0595 2;2 37.4 1 39.0 1 48.0 10.000 0.0676 0 6 7.000 1 1.4 5 74 CCAAAGTGCCCAGGACACCT CCCCCCAAACACCCATACAC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44914134 44914134 A G 83 81 0 2 32 49 A/G 0.9759 0;2 41.9 1 39.3 1 59.3 39.500 0.9753 0 0 2.000 1 1.4 79 81 TCTAGTGGGTGGAGGGCAGG ATGTTGCTAAACATTCCAAA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44946810 44946811 GA G 41 2 22 17 0 2 A/-1 0.0488 2;0 73.0 0 42.0 0 60.0 4.000 0.0488 0 0 3.000 1 1.5 2 41 GGTTCAAGGTGCAGGCCCTG GTGAGCCCAGCCTAGGTTTG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44915360 44915360 C CTGGGCGGGGAAGGACCCCACCTCTGGTCTTCCTCCGTGGCAGCCAGCTGCTATATCTGTCTAACATCCTTATCTGAGCTCTGCCCTCCTCTGCTCTAGAAAGCCCTATGGCTCCTGTGGCCCAGACCCAATTCCAGACTCATCTGTCTGCCATTCAGGGTCCTTCATGTCTCTTCCTTTCTGTGGCTCCAGCCTCCTTTCTTGCATTCCAATACCATGGAGTCCTGTGCTGCTCAAACTCTTATTCATTTATTCATCCATTCAATCAATCATCCATTTATTCAATAAACATTTACTAAGCCCTCTGAGGGATAGAGGGGATGAAGCTGTGAACAAGACGGGCATGGTCCGTCATCCCATGGAATTTAATATCAAGCAGAAAAGACAGACGTTAGGTCTGTGTCAGTTTAGCTCTTTATCATCTGTGTAACCTTGCATGAATAACCTCTTCTGT 83 2 41 32 0 2 C/+453 0.0241 2;0 32.0 1 39.6 1 60.0 4.000 0.0278 0.0241 70 2.000 1 0.5 2 72 GTGCCAGCCTTGCCTGGTTG TGGGCGGGGAAGGACCCCAC 20:44885702-44969115 Insertion 0 2-3-1 @@ -718,12 +718,12 @@ NA24385_chr_20_44885701_44969115 testbed 20 44947566 44947566 C T 100 2 36 61 0 NA24385_chr_20_44885701_44969115 testbed 20 44914791 44914792 CT C 86 2 54 30 1 1 T/-1 0.0233 2;2 11.0 0 37.0 1 60.0 4.000 0.0241 0 3 4.000 1 0.5 2 83 TATGGAGCACTTACTGTATG TTTCATGGGATCTTCCTGTC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44914795 44914795 T TCATGGGATCTTCCTGTCAACCCTGGAAGGCAGGTGTTCTCTTACTCAAAGAGAAGATGAGGAAACGGGGGCTCAGAGAGGGAAAGGGACATGCTCAAGCTGGATTTGAACCCAGCTGCCTGGCTCTTTCAGCTCTCCCACTCTGATGCTGGGC 92 3 60 31 2 1 T/+153 0.0326 2;2 64.0 1 41.5 1 60.0 6.000 0.0349 0.0326 70 4.000 1 0 3 86 GAGCACTTACTGTATGCTTT CATGGGATCTTCCTGTCAAC 20:44885702-44969115 Insertion 0 3-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44914800 44914800 G A 103 2 68 32 0 2 G/A 0.0194 2;0 9.0 0 42.0 0 60.0 4.000 0.0200 0 0 3.000 1 2.0 2 100 CTTACTGTATGCTTTTCATG GATCTTCCTGTCAACCCTGG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44947885 44947885 A AG 77 2 30 45 0 2 A/+1 0.0260 2;0 63.2 0 40.3 1 61.2 4.000 0.0274 0 4 5.000 1 0.5 2 73 CCCCAGATTGGCCACAGCCT GGGGTGTCCAAAAGTCCCAA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44947885 44947885 A AG 77 2 30 45 0 2 A/+1 0.0260 2;0 62.0 0 39.5 1 60.0 4.000 0.0274 0 4 5.000 1 0.5 2 73 CCCCAGATTGGCCACAGCCT GGGGTGTCCAAAAGTCCCAA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44947852 44947852 T TGTGCTCCCTTCTCCCCAGATTGGCCACAGCCTAGGGGTGTCCAAAAGTCCCAAGACTGAGACAGAGAGACAGATTGGCCCAGTACTGCAGGCAGCATTCAGGCAGTTGTCAAGGGCCTATGGAAAAGTTCAAGATGTGAAAAGGAAAAAAGAAAAGATAAGCTCCAAAATACAAAAAGAAAACTGCAAAATCAAAATTAGTAAGTGTTTAATTAAATGTCTACAAAATCTAGCATTGTGCCAACTAGTCAGTGCCAATTCTGTTCATCCCTCCTCTACTCATGCATAGGAGAGGTCTGAAGTGGGAGTCGGTGCATTTTATGCATGTGCTGTGGTGTGGCACGGGGACCTTCAAAGCAGGAGTGTGCTGGGGTTCAATCTCTTGGGTCACAGCTCTGTTCCTTGCTCACTGGGTG 68 4 18 47 2 2 T/+415 0.0588 2;2 42.5 1 35.0 1 60.0 8.000 0.0588 0.0588 70 2.000 1 1.0 4 68 CACCTCAGCTAACTGACCTC GTGCTCCCTTCTCCCCAGAT 20:44885702-44969115 Insertion 0 4-4-2 NA24385_chr_20_44885701_44969115 testbed 20 44914987 44914987 A AAGCCTTATTCCCCAGCATCCCCCGGGGTCTCAGTCTCACCCCATTAGCGCTGCTTTAAAAAGTGCGGACCGACCAGGGCGCGTTATTGCCCACATAAATCAGGCAGCTCCAAGTATGGAACACCTTTAAACAAACAGCTGATGGGAGTG 82 2 26 56 2 0 A/+149 0.0244 2;0 90.0 1 36.6 1 52.0 4.000 0.0250 0.0244 70 2.000 1 0 2 80 TCTGACCACGCCTGGCCCTC AGCCTTATTCCCCAGCATCC 20:44885702-44969115 Insertion 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44947720 44947720 C T 64 2 36 25 1 1 C/T 0.0312 2;2 19.0 1 42.0 0 60.0 4.000 0.0339 0 0 4.000 2 1.0 2 59 CAGCTGTTGGGCCTGAGACT TCTCTGTGCTGAGCTCCTGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44915047 44915047 A G 82 2 37 42 0 2 A/G 0.0244 2;0 46.0 0 39.5 1 60.0 4.000 0.0256 0 0 5.000 1 1.0 2 78 CCCATTAGCGCTGCTTTAAA AGTGCGGACCGACCAGGGCG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44947824 44947824 A AAGGGGAGCACCTCAGCTAACTGACCTCTGTGCTCCCTTCTCCCCAGACTGGCCACAGCCTAGGGGTGTCCAAAAGTCCCAAGACTGAGACAGAGAGACAGATTGGCCCAGTACTGCAGGCAGCATTCAGGCAGTTGTCAAGGGCCTATGG 69 2 15 34 1 1 A/+150 0.0290 2;2 64.7 1 52.9 1 78.4 4.000 0.0455 0.0290 47 2.000 1 0.7 2 44 GAGGCAGACCTGGAGTCCTT AGGGGAGCACCTCAGCTAAC 20:44885702-44969115 Insertion 0 2-4-2 +NA24385_chr_20_44885701_44969115 testbed 20 44947824 44947824 A AAGGGGAGCACCTCAGCTAACTGACCTCTGTGCTCCCTTCTCCCCAGACTGGCCACAGCCTAGGGGTGTCCAAAAGTCCCAAGACTGAGACAGAGAGACAGATTGGCCCAGTACTGCAGGCAGCATTCAGGCAGTTGTCAAGGGCCTATGG 69 2 15 34 1 1 A/+150 0.0290 2;2 49.5 1 40.5 1 60.0 4.000 0.0455 0.0290 47 2.000 1 0.7 2 44 GAGGCAGACCTGGAGTCCTT AGGGGAGCACCTCAGCTAAC 20:44885702-44969115 Insertion 0 2-4-2 NA24385_chr_20_44885701_44969115 testbed 20 44949152 44949153 AT A 100 2 45 53 2 0 T/-1 0.0200 2;0 49.0 0 42.0 0 60.0 4.000 0.0215 0 1 2.000 1 1.0 2 93 GCATAATACCATCTATTTGA TAAATGTGCATTCAGATGGT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44916405 44916406 CT C 62 3 31 28 1 2 T/-1 0.0484 2;2 34.3 1 42.0 1 60.0 6.000 0.0508 0.0161 0 2.000 1 0.3 3 59 GAATCTTATTCTGTTTGGAA CACCCAGGCTACTGTGGGTG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44916458 44916458 C A 100 5 51 44 1 4 C/A 0.0500 2;2 5.6 1 41.0 1 60.0 10.000 0.0556 0 1 1.000 1 2.2 5 90 GGCCCCCGCCCCTTCACCTG TGGGGTCCCCCATCAGGTGG 20:44885702-44969115 SNV 0 0 @@ -736,7 +736,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44916340 44916340 A AGCAATGGGAAGCTAT NA24385_chr_20_44885701_44969115 testbed 20 44916664 44917182 AAGACCTTGAGGTGGCCCCATTCACAGATTTGGGGAAGAGAGGGAAGTAGCAAGTTTGGAGGATAAGGAACCATTTATGTAGCTTAACATTCCCCAATGTGTGGAGGCCTGTGAGCCCTTGCATGTACTGTTCCAGGGAGAATGTCCTTCCCCAATCTTGTCTGATGGGGGATTTTGTATGAATCACTCAAAGCCAGGCTCCAATATCCCCTCCAATATATGAATCCCTCCCTGGTACCCCAGATTTGGTCTCTCTCCCCTATGTGTCCACACCTCTCCCAGCACCCTGTACCTCATAGAGCTCTTGGCTCCTTCAGTTTCCTCTGCTGTTTCCATCTCATTTCCCTCCAAGTTTTCGAAGGCCCCAGAGGGTAGTCCCTGGGCCACTCCTCCTCAGATGACCACATGTAACCCCGCAGCTTGAAACCCCATGGATTTGCTGATGACACCCAAATATGTGTGTCCAACTCAGATGTCTGCCCAAAACCCAACACATAGAGCCTCTTGCCTGTTCAGTGC A 104 5 54 50 5 0 A/-518 0.0481 2;0 548.0 1 36.7 1 60.0 10.000 0.0481 0.0288 3 2.000 1 0.3 5 104 AAGATGAGGACCTGTTCGGT AGATATCTAAAACGCCCTTC 20:44885702-44969115 Deletion 0 3-10-2 NA24385_chr_20_44885701_44969115 testbed 20 44949379 44949379 A AT 87 2 34 51 0 2 A/+1 0.0230 2;0 60.0 0 42.0 0 60.0 4.000 0.0247 0 0 4.000 1 1.0 2 81 TCATTTGCAAGAACACATAT AAACAAAGGATCTCTTGTGA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44949401 44949402 CT C 87 2 29 55 1 1 T/-1 0.0230 2;2 27.0 1 42.0 0 60.0 4.000 0.0244 0 1 2.000 1 0.5 2 82 AACAAAGGATCTCTTGTGAT TGCTCCATTATCTTGCTCCA 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44916678 44916678 G GCCCCATTCACAGATTTGGGGAAGAGAGGGAAGTAGCAAGTTTGGAGGATAAGGAACCATTTATGTAGCTTAACATTCCCTCTCTT 120 3 26 24 0 3 G/+85 0.0250 2;0 30.4 1 41.7 1 60.8 6.000 0.0588 0.0167 70 2.000 1 0 3 51 TTCGGTAAGACCTTGAGGTG CCCCATTCACAGATTTGGGG 20:44885702-44969115 Insertion 0 3-0-0 +NA24385_chr_20_44885701_44969115 testbed 20 44916678 44916678 G GCCCCATTCACAGATTTGGGGAAGAGAGGGAAGTAGCAAGTTTGGAGGATAAGGAACCATTTATGTAGCTTAACATTCCCTCTCTT 120 3 26 24 0 3 G/+85 0.0250 2;0 25.2 1 34.6 1 50.4 6.000 0.0588 0.0167 70 2.000 1 0 3 51 TTCGGTAAGACCTTGAGGTG CCCCATTCACAGATTTGGGG 20:44885702-44969115 Insertion 0 3-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44916691 44916692 AT A 99 3 48 48 2 1 T/-1 0.0303 2;2 14.7 1 39.8 1 60.0 6.000 0.0341 0.0202 2 3.000 1 2.0 3 88 TGAGGTGGCCCCATTCACAG TTGGGGAAGAGAGGGAAGTA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44949291 44949292 CT C 98 2 42 53 0 2 T/-1 0.0204 2;0 55.0 0 42.0 0 60.0 4.000 0.0220 0 2 3.000 1 0 2 91 TAAAATAAGACAAGTGACCA TTCAGAGGGCTCATAGTCTA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44949310 44949310 C T 110 2 50 56 1 1 C/T 0.0182 2;2 9.5 1 42.0 0 60.0 4.000 0.0200 0 1 1.000 1 1.5 2 100 ACTTTCAGAGGGCTCATAGT TAGGAGGGGAGATACATACG 20:44885702-44969115 SNV 0 0 @@ -744,7 +744,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44949256 44949256 T A 121 2 55 64 1 NA24385_chr_20_44885701_44969115 testbed 20 44949269 44949269 T A 106 2 48 56 2 0 T/A 0.0189 2;0 36.0 0 42.0 0 60.0 4.000 0.0200 0 0 2.000 2 1.0 2 100 ATTGAAATAAAATAAAACAA ATAAAATAAGACAAGTGACC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44949341 44949341 A T 97 2 40 54 0 2 A/T 0.0206 2;0 30.0 0 42.0 0 60.0 4.000 0.0225 0 1 3.000 1 1.0 2 89 GATACATACGAAAAAATTGC TTTATACAAAATCATGCTCA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44949330 44949331 GA G 99 92 5 1 40 52 A/-1 0.9293 2;2 32.9 1 40.7 1 60.0 184.000 0.9388 0.0808 5 6.000 1 0.8 92 98 CTAGGAGGGGAGATACATAC AAAAATTGCATTTATACAAA 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44915937 44915937 G GAGTACTTCTTACTCCAT 93 2 38 52 1 1 G/+17 0.0215 2;2 13.3 1 40.3 1 61.2 4.000 0.0225 0.0215 4 2.000 1 1.5 2 89 TCCTCTGATCATTTACTATG AGTAAGAAGTACTCCGTAAG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44915937 44915937 G GAGTACTTCTTACTCCAT 93 2 38 52 1 1 G/+17 0.0215 2;2 13.0 1 39.5 1 60.0 4.000 0.0225 0.0215 4 2.000 1 1.5 2 89 TCCTCTGATCATTTACTATG AGTAAGAAGTACTCCGTAAG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44915773 44915774 CT C 77 2 34 39 1 1 T/-1 0.0260 2;2 36.5 1 42.0 0 60.0 4.000 0.0274 0 2 3.000 1 0 2 73 AGGTCTGTGTCAGTTTAGCT TTATCATCTGTGTAACCTTG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44915732 44915732 C T 76 2 42 32 1 1 C/T 0.0263 2;2 9.0 0 42.0 0 60.0 4.000 0.0282 0 0 2.000 1 1.5 2 71 CATCCCATGGAATTTAATAT AAGCAGAAAAGACAGACGTT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44948544 44948544 A T 62 3 25 34 0 3 A/T 0.0484 2;0 59.0 0 42.0 0 60.0 6.000 0.0484 0 0 1.000 1 1.0 3 62 ACGATATTCGAATGTGTAAC GTTAATAATGGCCATTGGAG 20:44885702-44969115 SNV 0 0 @@ -752,19 +752,19 @@ NA24385_chr_20_44885701_44969115 testbed 20 44948546 44948549 TTAA T 61 2 22 37 NA24385_chr_20_44885701_44969115 testbed 20 44948903 44948903 G C 92 3 59 30 3 0 G/C 0.0326 2;0 8.0 0 42.0 0 60.0 6.000 0.0337 0 0 1.000 1 3.0 3 89 GCTCCTGGGTGTAAATTTCA TGAAATTCTCAGCATGACTG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44948929 44948929 A C 78 2 54 22 0 2 A/C 0.0256 2;0 6.0 0 42.0 0 60.0 4.000 0.0294 0 0 2.000 1 1.0 2 68 TTCTCAGCATGACTGGGAGG ACAAGTCTGAGGATTCTTGT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44916056 44916056 G A 59 59 0 0 31 28 A/A 1.0000 0;2 30.2 1 38.4 1 59.0 10.800 1.0000 0.0339 0 2.000 1 1.9 54 54 GAGCATCTGACAGGGAGCTC GACTAGTCTGGGGCTCTTGG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44917275 44917275 C CA 77 3 33 40 2 1 C/+1 0.0390 2;2 41.1 1 43.1 0 61.6 6.000 0.0423 0 5 6.000 1 0.7 3 71 AAATAATGAGAACATAAATT AAAAACTGCTCCTCTTCCAG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44917275 44917275 C CA 77 3 33 40 2 1 C/+1 0.0390 2;2 40.0 1 42.0 0 60.0 6.000 0.0423 0 5 6.000 1 0.7 3 71 AAATAATGAGAACATAAATT AAAAACTGCTCCTCTTCCAG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44917318 44917318 C T 80 3 30 47 3 0 C/T 0.0375 2;0 61.0 0 42.0 0 60.0 6.000 0.0390 0 0 2.000 1 1.0 3 77 TTCCCCAGTTCGGTAACTGG AACTCCATGCTTCCAGCTGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44950446 44950459 CTTGGGTTCAAAGA TCTTGAGGGGT 80 5 42 33 3 2 C/-14iTCTTGAGGGGT 0.0625 2;2 46.2 1 38.0 1 60.0 10.000 0.0667 0.0125 0 4.000 1 0.8 5 75 CTTACTTCTCTGTTAAAGGG GCTGGCTTTAGATCCAGGTG 20:44885702-44969115 Complex 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44917653 44917653 A AGATCCAACAAGAATTGGCTTCTTGTTACTTCTCTGACCTTTTCCTAGTCCCCTCTCCCTCTATTTCAGCCACACTGGCCCTCTGGCTCTTCTCTGAATAGACCAGGTATGATCCCACCTTTGGGCCTTTGCACTTGCTGGTCCTCTTGCCTGGAACACCCTCGCCCCTGATGTCTGCCTGGCTCACTCTCTCCCTTCCTTCGAGGGTCTGCTCAAATGGCTGACCCCATGCACCTTTCCCTTACAACCTGTGATAAACTAGCTCCTCAGTTCCCCAGGCCATTCATATCCCCTCATCCTGCTTTCTTCACCTTCTCCATAACACTTATCACTATCTGATATATTATAAATG 94 3 23 14 2 1 A/+351 0.0319 2;2 53.3 1 52.3 1 78.0 6.000 0.0811 0.0319 46 2.000 1 0.4 3 37 TCGGAGTAAAATGGCTCATA GATCCAACAAGAATTGGCTT 20:44885702-44969115 Insertion 0 3-0-0 +NA24385_chr_20_44885701_44969115 testbed 20 44917653 44917653 A AGATCCAACAAGAATTGGCTTCTTGTTACTTCTCTGACCTTTTCCTAGTCCCCTCTCCCTCTATTTCAGCCACACTGGCCCTCTGGCTCTTCTCTGAATAGACCAGGTATGATCCCACCTTTGGGCCTTTGCACTTGCTGGTCCTCTTGCCTGGAACACCCTCGCCCCTGATGTCTGCCTGGCTCACTCTCTCCCTTCCTTCGAGGGTCTGCTCAAATGGCTGACCCCATGCACCTTTCCCTTACAACCTGTGATAAACTAGCTCCTCAGTTCCCCAGGCCATTCATATCCCCTCATCCTGCTTTCTTCACCTTCTCCATAACACTTATCACTATCTGATATATTATAAATG 94 3 23 14 2 1 A/+351 0.0319 2;2 41.0 1 40.2 1 60.0 6.000 0.0811 0.0319 46 2.000 1 0.4 3 37 TCGGAGTAAAATGGCTCATA GATCCAACAAGAATTGGCTT 20:44885702-44969115 Insertion 0 3-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44950417 44950417 A C 75 2 42 30 0 2 A/C 0.0267 2;0 28.5 1 32.0 0 60.0 4.000 0.0294 0 2 3.000 1 2.5 2 68 ACTAGAGCACACTGAATTGA ACCGTCTTCTTACTTCTCTG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44950522 44950522 C T 75 2 34 39 1 1 C/T 0.0267 2;2 6.0 0 37.0 1 60.0 4.000 0.0270 0 0 1.000 1 1.0 2 74 GCTGTACTGCACTCTTGGAC AGTTATTTGACCTTTCTGGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44917544 44917544 C T 43 2 17 24 0 2 C/T 0.0465 2;0 43.0 0 42.0 0 60.0 4.000 0.0526 0 2 5.000 1 1.0 2 38 TCCCTGCTTCTGCCCTGGCC CCTGCAGACTGTTCTCAGTT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44950334 44950334 A AC 70 2 31 31 2 0 A/+1 0.0286 2;0 12.3 0 43.1 0 61.6 4.000 0.0400 0 5 6.000 1 1.0 2 50 CCCCTCAAGACCCAGACCTC CCCCCTCCTGGAAGCCTCAC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44950334 44950334 A AC 70 2 31 31 2 0 A/+1 0.0286 2;0 12.0 0 42.0 0 60.0 4.000 0.0400 0 5 6.000 1 1.0 2 50 CCCCTCAAGACCCAGACCTC CCCCCTCCTGGAAGCCTCAC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44950323 44950323 A T 69 3 33 32 2 1 A/T 0.0435 2;2 18.7 1 31.7 1 60.0 2.000 0.0357 0.0290 2 3.000 1 2.0 2 56 ACTCCTATGCACCCCTCAAG CCCAGACCTCACCCCCTCCT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44950390 44950391 AT A 80 2 40 38 2 0 T/-1 0.0250 2;0 30.0 0 42.0 0 60.0 4.000 0.0274 0 1 2.000 1 2.0 2 73 ACAACCCCCAAACCTCTCCT TGCAGACTAGAGCACACTGA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44950348 44951101 G 103 2 38 38 2 0 G/ 0.0194 2;0 29.0 1 40.9 1 60.0 4.000 0.0282 0.0194 0 3.000 1 0 2 71 GACCTCACCCCCTCCTGGAA AGAGGACAGGGTCCGGAGTA 20:44885702-44969115 INV 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44949684 44949684 T A 59 3 23 33 1 2 T/A 0.0508 2;2 33.3 1 42.0 0 60.0 6.000 0.0545 0 0 3.000 1 1.0 3 55 AGGGAATGAAATTGAAATAG GGGTTTTAGTTGCCATGGGA 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44916919 44916919 T TC 78 2 36 40 0 2 T/+1 0.0256 2;0 55.6 1 37.7 1 61.2 4.000 0.0267 0 4 5.000 1 2.0 2 75 TACCCCAGATTTGGTCTCTC CCCCTATGTGTCCACACCTC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44916919 44916919 T TC 78 2 36 40 0 2 T/+1 0.0256 2;0 54.5 1 37.0 1 60.0 4.000 0.0267 0 4 5.000 1 2.0 2 75 TACCCCAGATTTGGTCTCTC CCCCTATGTGTCCACACCTC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44916877 44916877 C A 90 4 39 47 2 2 C/A 0.0444 2;2 24.5 1 39.5 1 60.0 8.000 0.0455 0.0222 0 2.000 1 1.0 4 88 CCAGGCTCCAATATCCCCTC AATATATGAATCCCTCCCTG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44916969 44917090 T 87 2 34 50 2 0 T/ 0.0230 2;0 30.0 1 41.0 1 60.0 4.000 0.0256 0.0230 0 4.000 1 0 2 78 CCTGTACCTCATAGAGCTCT CCCATGGATTTGCTGATGAC 20:44885702-44969115 INV 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44916967 44916968 CT C 85 2 32 51 2 0 T/-1 0.0235 2;0 16.0 0 42.0 0 60.0 4.000 0.0253 0 1 2.000 1 0 2 79 ACCCTGTACCTCATAGAGCT TGGCTCCTTCAGTTTCCTCT 20:44885702-44969115 Deletion 0 0 @@ -780,57 +780,57 @@ NA24385_chr_20_44885701_44969115 testbed 20 44917191 44917191 A G 81 2 35 44 1 1 NA24385_chr_20_44885701_44969115 testbed 20 44917186 44917186 T C 77 2 30 45 2 0 T/C 0.0260 2;0 6.0 0 42.0 0 60.0 4.000 0.0278 0 0 1.000 1 3.5 2 72 TCTTGCCTGTTCAGTGCAGA ATCTAAAACGCCCTTCAAAA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44917049 44917052 ACTC A 93 5 47 41 0 5 C/-3 0.0538 2;0 38.0 0 42.0 0 60.0 10.000 0.0549 0 6 3.000 3 0 5 91 CAGAGGGTAGTCCCTGGGCC CTCCTCAGATGACCACATGT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44917044 44917044 G GGGCCACTCCTCCTCAGATGACCACATGTAACCCCGCAGCTTGAAACCCCATGGATTTGCTGATGACACCCAAATATGTGTGTCCAACTCAGATGTCTGCCCAAAACCCAACACATAGAGCCTCTTGCCTGTTCAGTGCAGATATCTAAAACGCCCTTCAAAACCCTCATGTCTGAACCCGGACTCCTGAGTCCTACCCCCAACCACACACAAATAATGAGAACATAAATTCAAAAACTGCTCCTCTTCCAGCATTCCCCAGTTCGGTAACTGGCAACTCCATGCTTCCAGCTGCTTCCGCCAAAAGCCTTGAAGTCAGTCTTGACTTCACACCCCACATCCAATCCATCAGCAAATCTTGCCAGCTCTACCTTAAAATAGATCCAGAATCTGGCCGATCTTGCCACCTTCATTGTTAGCAGCCTGGTCCGGCCACCATCATCTCTCACCTGGATGATTGCAACAGCCTCCTAACTGGTATCCCTGCTTCTGCCCT 96 2 47 49 0 2 G/+495 0.0208 2;0 47.0 1 40.0 1 60.0 4.000 0.0211 0.0208 70 3.000 1 0 2 95 GGCCCCAGAGGGTAGTCCCT GGCCACTCCTCCTCAGATGA 20:44885702-44969115 Insertion 0 2-2-1 -NA24385_chr_20_44885701_44969115 testbed 20 44949775 44949775 G GC 70 2 37 31 1 1 G/+1 0.0286 2;2 29.8 1 37.2 1 61.6 4.000 0.0308 0.0143 5 6.000 1 2.1 2 65 TATCAGCTTCTGGTGTCTGG CCCCCTGCAACTCAAGCTGG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44949775 44949775 G GC 70 2 37 31 1 1 G/+1 0.0286 2;2 29.0 1 36.2 1 60.0 4.000 0.0308 0.0143 5 6.000 1 2.1 2 65 TATCAGCTTCTGGTGTCTGG CCCCCTGCAACTCAAGCTGG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44949761 44949762 CT C 68 3 33 32 3 0 T/-1 0.0441 2;0 17.7 1 37.0 1 60.0 6.000 0.0469 0 1 2.000 1 1.7 3 64 GACACTTCTTGCCTTATCAG TCTGGTGTCTGGGCCCCCTG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44951202 44951853 C 99 2 30 67 0 2 C/ 0.0202 2;0 33.0 1 42.0 1 60.0 4.000 0.0204 0.0202 0 2.000 1 0 2 98 CCTGGCTCCTGCCTGGCTCC AATGTCCCTGTTTCGGAGTC 20:44885702-44969115 INV 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44918429 44918536 A 115 4 46 65 0 4 A/ 0.0348 2;0 33.0 1 32.4 1 60.0 8.000 0.0354 0.0348 0 3.000 1 0 4 113 CTGGGAGGGGAGGAAGCTAG GAGGCTAACCTGTGGATTTA 20:44885702-44969115 INV 0 4-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44951089 44951089 T C 113 3 68 42 3 0 T/C 0.0265 2;0 8.7 1 31.7 1 60.0 2.000 0.0187 0.0177 0 1.000 1 2.0 2 107 GCCATCCTCTCTGGGTGATG AGCATGTGAGGCAGAGGACA 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44951057 44951057 C CCTCCCACTCAAGCCATCCTCTCCCTCCCCGCCACCTCTGTCTCACTGCCTCTCCTGCCAG 117 2 64 36 1 1 C/+60 0.0171 2;2 35.3 1 41.9 1 68.4 4.000 0.0202 0.0171 22 2.000 1 0 2 99 GCCCCCTGGCCGGGTTCCAG CTCCCACTCAAGCCATCCTC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44951057 44951057 C CCTCCCACTCAAGCCATCCTCTCCCTCCCCGCCACCTCTGTCTCACTGCCTCTCCTGCCAG 117 2 64 36 1 1 C/+60 0.0171 2;2 31.0 1 36.8 1 60.0 4.000 0.0202 0.0171 22 2.000 1 0 2 99 GCCCCCTGGCCGGGTTCCAG CTCCCACTCAAGCCATCCTC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44951146 44951146 C T 93 2 43 46 0 2 C/T 0.0215 2;0 68.0 0 42.0 0 60.0 4.000 0.0225 0 0 2.000 1 1.0 2 89 CCATCACCAGCCAGACTGCC TTGGTCTTGCCAGAGGCCTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44918392 44918393 GA G 90 4 39 46 2 2 A/-1 0.0444 2;2 51.0 1 42.0 0 60.0 8.000 0.0476 0 1 2.000 1 0.5 4 84 GAAATTTTCCTGCCATTTCT AGGACCTGGGGTCACCTGGG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44951159 44951160 GA G 86 6 33 47 2 4 A/-1 0.0698 2;2 50.3 1 40.3 1 60.0 12.000 0.0741 0 0 3.000 1 1.7 6 81 GACTGCCCTTGGTCTTGCCA GGCCTCCTTGGTGCCCGCCT 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44951475 44951475 G GA 94 6 45 39 1 5 G/+1 0.0638 2;2 51.6 1 40.7 1 63.2 12.000 0.0706 0.0106 9 10.000 1 1.6 6 85 GGCGGGGAGGGAGCTGGTGA AAAAAAAAACCACGAAATTT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44951475 44951475 G GA 94 6 45 39 1 5 G/+1 0.0638 2;2 49.0 1 38.6 1 60.0 12.000 0.0706 0.0106 9 10.000 1 1.6 6 85 GGCGGGGAGGGAGCTGGTGA AAAAAAAAACCACGAAATTT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44951434 44951434 G A 120 2 58 60 2 0 G/A 0.0167 2;0 48.0 0 42.0 0 60.0 4.000 0.0174 0 0 2.000 2 1.5 2 115 ACTTGAGAGGGAGCTGGCAG AGAGGCAGTGAGACAGAGGT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44951427 44951427 C T 114 2 55 56 0 2 C/T 0.0175 2;0 29.5 1 34.5 1 60.0 4.000 0.0192 0 0 1.000 1 1.5 2 104 AGAGTGGACTTGAGAGGGAG TGGCAGGAGAGGCAGTGAGA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44951500 44951500 T A 73 2 32 39 0 2 T/A 0.0274 2;0 43.0 0 39.5 1 60.0 4.000 0.0299 0 0 1.000 1 1.0 2 67 AAAAACCACGAAATTTAAAG GAATGAATTATTTACTGCAG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44918565 44918666 TTGGAAGTTCAGGAAACTAAAGTTTTAGAACAGGCCAAGAGTTTAGGGTTAGGGTCTGAATTAAGGTTTGGAGTTTGGAAAACAGGTTGAAGCTTTGGATTT AATATTAACTATAAATCC 103 2 50 47 1 1 T/-102iAATATTAACTATAAATCC 0.0194 2;2 18.0 1 39.0 1 60.0 4.000 0.0220 0.0194 0 3.000 1 1.0 2 91 CCTGTGGATTTAGAATTCTG AAAGTTAATATTCAGAATTC 20:44885702-44969115 Complex 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44885810 44885810 T A 50 2 27 21 2 0 T/A 0.0400 2;0 46.0 0 42.0 0 60.0 4.000 0.0465 0 2 2.000 2 1.0 2 43 ATAGAAAAATTAGCTGGGTG GCTGGCATGTGCCTGTAGTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44918532 44918532 T A 115 2 54 59 1 1 T/A 0.0174 2;2 19.5 1 32.7 1 60.0 4.000 0.0182 0.0087 0 1.000 1 2.5 2 110 AGGTTTCCAACTTGGCTTCA GTTTGAGGCTAACCTGTGGA 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44885783 44885783 C CA 62 3 28 28 1 2 C/+1 0.0484 2;2 44.7 1 43.7 0 62.4 6.000 0.0508 0 7 8.000 1 0.3 3 59 ATGGCAAAACCCTGTCTCTA AAAAAAATAGAAAAATTAGC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44885783 44885783 C CA 62 3 28 28 1 2 C/+1 0.0484 2;2 43.0 1 42.0 0 60.0 6.000 0.0508 0 7 8.000 1 0.3 3 59 ATGGCAAAACCCTGTCTCTA AAAAAAATAGAAAAATTAGC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44885883 44885883 C G 34 19 12 3 10 9 C/G 0.5588 2;2 26.8 1 33.2 1 60.0 5.333 0.5517 0 0 1.000 1 2.7 16 29 TCACCTGAGCTTGGGGAGGT GAGGCTGCAATGAGACATGA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44950670 44950670 G C 87 7 47 33 0 7 G/C 0.0805 2;0 7.0 0 42.0 0 60.0 14.000 0.0875 0 0 1.000 1 1.3 7 80 GGGGAGGAATAAATGAAGCA TGGGCATGAGTTCTTGGCTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44917912 44917912 T A 82 2 41 39 2 0 T/A 0.0244 2;0 7.0 0 39.5 1 60.0 4.000 0.0256 0 0 1.000 1 4.5 2 78 CCTTACAACCTGTGATAAAC AGCTCCTCAGTTCCCCAGGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44917915 44918342 C 99 3 41 37 3 0 C/ 0.0303 2;0 44.0 1 38.8 1 60.0 6.000 0.0390 0.0303 0 3.000 1 0 3 77 TACAACCTGTGATAAACTAG GGATTATGGCTAGACAGAGC 20:44885702-44969115 INV 0 3-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44950538 44950538 C CTGGGCCTTCTATTTCTCATCTGTACAATGGAAATAGAAAGAGTACCTATCAGAAAAATAAAAACAAACAAAAACGCTCCAAACCACTCAAATACCCACCTCATGGGGATTTGGGGAGGAATAAATGAAGCAGTGGGCATGAGTTCTTGGCTCAGTGCCCAGCACATAGTAAGTGATCAATAAATGTTGGCCATTATTGTCTGTCTCCCTCCACCAAGCCAGGAGTTCCTGGAGATCAAGGCAGAATCTGATCTGCGTTTGGGGGCCCAGCACCTCCCCAGGGTCTACTTGTTGAACAGTTATCTGCCAGACATTCCATTACTGTGTACTAAGAGATTCCACATAGGTGCCCACCATTAGCATATTTGAGCCATGGGTCTTAGAACTGGCACTCAGATTGGAGTTGTTCCATGCTTTTGATCTGGGGCCTGGCAGTGTCTATGATGGG 104 2 40 44 1 1 C/+447 0.0192 2;2 17.0 1 40.0 1 60.0 4.000 0.0235 0.0192 70 3.000 1 0.5 2 85 GGACCAGTTATTTGACCTTT TGGGCCTTCTATTTCTCATC 20:44885702-44969115 Insertion 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44917767 44917767 C T 56 2 36 17 2 0 C/T 0.0357 2;0 65.0 0 37.0 1 60.0 4.000 0.0392 0 0 3.000 1 2.0 2 51 TGAATAGACCAGGTATGATC CACCTTTGGGCCTTTGCACT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44950596 44950596 T TA 111 3 60 46 0 3 T/+1 0.0270 2;0 40.0 1 42.5 1 61.6 6.000 0.0294 0.0090 5 6.000 1 0.3 3 102 AAGAGTACCTATCAGAAAAA AAAAACAAACAAAAACGCTC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44950596 44950596 T TA 111 3 60 46 0 3 T/+1 0.0270 2;0 39.0 1 41.4 1 60.0 6.000 0.0294 0.0090 5 6.000 1 0.3 3 102 AAGAGTACCTATCAGAAAAA AAAAACAAACAAAAACGCTC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44918159 44918159 T G 83 4 43 35 0 4 T/G 0.0482 2;0 6.0 0 42.0 0 60.0 8.000 0.0526 0 1 1.000 1 1.2 4 76 GCATAGTTTTTATCTATCTG CTTCCTGTTTGTCTGCTTGT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44950938 44950939 GA G 77 2 34 41 2 0 A/-1 0.0260 2;0 26.0 0 42.0 0 60.0 4.000 0.0282 0 0 3.000 1 0 2 71 TAGAACTGGCACTCAGATTG GTTGTTCCATGCTTTTGATC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44950989 44950990 GA G 99 3 58 37 3 0 A/-1 0.0303 2;0 23.0 0 42.0 0 60.0 6.000 0.0333 0 1 2.000 1 0.3 3 90 GCAGTGTCTATGATGGGAGT AGGGGCCACCGCTAGCCAGA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44918218 44918218 G A 89 84 0 0 43 41 A/A 0.9438 0;2 37.3 1 38.4 1 60.0 13.000 0.9512 0.0225 0 1.000 1 1.5 78 82 AGCGGGAAGCCACTGGATCC ATTCTCCACTGCTTTCCTGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44918218 44918220 GAT AA 89 5 0 0 2 3 AAT/-1AA 0.0562 0;2 12.0 1 38.0 1 60.0 4.000 0.0488 0.0337 0 2.000 1 2.0 4 82 AGCGGGAAGCCACTGGATCC TCTCCACTGCTTTCCTGGTG 20:44885702-44969115 Complex 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44950997 44950997 C T 97 4 56 36 4 0 C/T 0.0412 2;0 41.0 0 38.2 1 60.0 8.000 0.0430 0 0 1.000 1 4.2 4 93 TATGATGGGAGTGAAGGGGC ACCGCTAGCCAGATCTCTTT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44918054 44918054 C CT 89 2 55 30 1 1 C/+1 0.0225 2;2 56.8 1 43.4 0 62.0 4.000 0.0233 0 6 7.000 1 0.5 2 86 CATGATTTTAGGGGTGTTGT TTTTTTGCTTGATGCTGTAT 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44950797 44950797 T TG 80 2 37 38 1 1 T/+1 0.0250 2;2 19.0 1 43.1 1 61.6 4.000 0.0267 0.0125 5 6.000 1 0.5 2 75 GGCAGAATCTGATCTGCGTT GGGGGCCCAGCACCTCCCCA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44918054 44918054 C CT 89 2 55 30 1 1 C/+1 0.0225 2;2 55.0 1 42.0 0 60.0 4.000 0.0233 0 6 7.000 1 0.5 2 86 CATGATTTTAGGGGTGTTGT TTTTTTGCTTGATGCTGTAT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44950797 44950797 T TG 80 2 37 38 1 1 T/+1 0.0250 2;2 18.5 1 42.0 1 60.0 4.000 0.0267 0.0125 5 6.000 1 0.5 2 75 GGCAGAATCTGATCTGCGTT GGGGGCCCAGCACCTCCCCA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44950856 44950856 T A 77 2 36 39 2 0 T/A 0.0260 2;0 28.0 0 29.5 1 60.0 4.000 0.0270 0 0 2.000 1 1.0 2 74 GTTATCTGCCAGACATTCCA TACTGTGTACTAAGAGATTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44919465 44919466 GA G 75 2 31 39 0 2 A/-1 0.0267 2;0 30.0 0 42.0 0 60.0 4.000 0.0377 0 0 2.000 1 0.5 2 53 TAGTTTTGCAGAGTTGCAGA GCCCAAGCAGGGTCTATGGG 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44919483 44919483 T TG 76 9 23 38 3 6 T/+1 0.1184 2;2 39.2 1 42.3 1 62.0 18.000 0.1667 0 6 7.000 1 2.9 9 54 GAGAGCCCAAGCAGGGTCTA GGGGGGTGTGTTTGGAAGGA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44919483 44919483 T TG 76 9 23 38 3 6 T/+1 0.1184 2;2 37.9 1 40.9 1 60.0 18.000 0.1667 0 6 7.000 1 2.9 9 54 GAGAGCCCAAGCAGGGTCTA GGGGGGTGTGTTTGGAAGGA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44886782 44886782 T TGACCTTGCTGGCAGTGACTTGGTGGAGTAGTGGGTGCACACACATGACTGGAACAGGTTCAAGAGAACTGGGAGGAGGGAAGGTGGGGACATGTGTGGGTGGGCGATGGTCCCTCTTGGGATTTGTGAAGGTTCATTTGCCTGTTGCCCCCACCCCCCAACCGCATCCCAGTAGAGATGGCTCAAGACTGAGGCTCAGGACACAAATCAGCATCCACACAATGCCACCAGGGCAGCTTCAGCTGTGTGGGGAGGGCCAGAAGAGCCTCCTTCTCCCTGCACC 72 4 39 23 2 2 T/+282 0.0556 2;2 37.5 1 41.1 1 60.0 8.000 0.0656 0.0556 70 2.000 1 0 4 61 AGTGGGGCGGAGGTCATTAG GACCTTGCTGGCAGTGACTT 20:44885702-44969115 Insertion 0 4-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44919508 44919508 T TG 81 2 37 38 0 2 T/+1 0.0247 2;0 45.7 1 43.1 0 61.6 4.000 0.0299 0 5 6.000 1 3.1 2 67 GGTGTGTTTGGAAGGAAGGC GGGGGTGTGGCATGGATAGT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44919508 44919508 T TG 81 2 37 38 0 2 T/+1 0.0247 2;0 44.5 1 42.0 0 60.0 4.000 0.0299 0 5 6.000 1 3.1 2 67 GGTGTGTTTGGAAGGAAGGC GGGGGTGTGGCATGGATAGT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44952274 44952274 C T 31 3 14 14 0 3 C/T 0.0968 2;0 7.0 0 42.0 0 60.0 6.000 0.1000 0 0 1.000 1 1.7 3 30 AAACCCAGGGTAAGGAAAGA AGCAGGTGTTCCCTGCTACT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44919326 44919326 A G 120 3 47 70 2 1 A/G 0.0250 2;2 6.0 0 30.3 1 60.0 2.000 0.0183 0 0 5.000 1 2.3 2 109 GCAGACTCTAAGGGAGAGGA GGGGGTTAGGGTGGAGATGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44952174 44952174 C G 55 3 22 30 3 0 C/G 0.0545 2;0 8.0 0 25.0 1 60.0 2.000 0.0426 0 0 5.000 1 7.0 2 47 TTGGCCCCAAATCCTGGTCT CCCCTTGCCGTCACGGGGCA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44886605 44886607 CTG C 40 2 17 20 0 2 T/-2 0.0500 2;0 15.0 0 39.5 1 60.0 4.000 0.0571 0 2 2.000 2 0 2 35 TGTAGGGAGGGAGTGGTGAA TGCCGAATGCTGCCATTGAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44919737 44919738 GA G 77 2 29 46 2 0 A/-1 0.0260 2;0 26.0 0 42.0 0 60.0 4.000 0.0267 0 2 3.000 1 0.5 2 75 ACCAGCCTGGCCAACATGGC AACCCTGTCTCTACTAAAAA 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44886934 44886934 A AC 74 7 29 29 2 5 A/+1 0.0946 2;2 20.7 1 42.7 1 58.8 14.000 0.1228 0 6 7.000 1 0.1 7 57 TTCATTTGCCTGTTGCCCCC CCCCCCAACCGCATCCCAGT 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44886934 44886934 A ACC 74 2 29 29 0 2 A/+2 0.0270 2;0 57.9 0 43.4 0 62.0 4.000 0.0351 0 6 8.000 1 0.5 2 57 TTCATTTGCCTGTTGCCCCC CCCCCCAACCGCATCCCAGT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44886934 44886934 A AC 74 7 29 29 2 5 A/+1 0.0946 2;2 20.0 1 41.3 1 56.9 14.000 0.1228 0 6 7.000 1 0.1 7 57 TTCATTTGCCTGTTGCCCCC CCCCCCAACCGCATCCCAGT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44886934 44886934 A ACC 74 2 29 29 0 2 A/+2 0.0270 2;0 56.0 0 42.0 0 60.0 4.000 0.0351 0 6 8.000 1 0.5 2 57 TTCATTTGCCTGTTGCCCCC CCCCCCAACCGCATCCCAGT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44887034 44887034 A G 78 2 34 40 2 0 A/G 0.0256 2;0 9.5 1 39.5 1 60.0 4.000 0.0299 0 0 3.000 1 2.0 2 67 GCAGCTTCAGCTGTGTGGGG GGGCCAGAAGAGCCTCCTTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44952536 44952536 A G 45 2 22 21 2 0 A/G 0.0444 2;0 16.0 0 42.0 0 60.0 4.000 0.0476 0 0 1.000 1 1.0 2 42 CCTGAGGGTGGGGGGTCTCC TGGAGTCAAGGAGGAGAGAG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44919588 44919588 A G 92 2 47 43 2 0 A/G 0.0217 2;0 8.0 0 39.5 1 60.0 4.000 0.0235 0 0 1.000 1 2.0 2 85 TGTCCAATGCACCCTCTGCA CTTATGTGACTGCCTTGTTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44919608 44919609 CA C 76 3 43 30 0 3 A/-1 0.0395 2;0 50.0 0 42.0 0 60.0 6.000 0.0411 0 1 2.000 1 0 3 73 ACTTATGTGACTGCCTTGTT AGACAGAATTCAAATAATAA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44886810 44886810 T TAGTGGGTGCACACACATGACTGGAACAGGTTCAAGAGAACTGGGAGGAGGGAAGGTGGGGACATGTGTGGGTGGGCGATGGTCCCTCTTGGGATTTGTGAAGGTTCATTTGCCTGTTGCCCCCACCCCCCAACCGCATCCCAGTAGAGATGGCTCAAGACTGAGGCTCAGGACACAAATCAGCATCCACACAATGCCACCAGGGCAGCTTCAGCTGTGTGGGGAGGGCCAGAAGAGCCTCCTTCTCCCTGCACCCCCTCCTCTACTCTTCCCATCTCTCCTGCCGCAGGGCCCGGCCAGACTCATCCCCATGTGCCCAGACTGTGACGGAGCCAACACCATTTGCCTGGGACCCCTGTGGGCCCTAAGCCCCCTAGCAGGACAGGTGAGTCTCTGTCCTTGCCCAGGCTCCTGTGACCTGGCAGATCCTTGCTGCTCCTGCCTAGGGCTGGGTTTCTCTAGTGGGTATGGGAAGAGGAGAGG 65 2 34 25 2 0 T/+482 0.0308 2;0 24.0 1 40.5 1 60.0 4.000 0.0392 0.0308 70 2.000 1 2.5 2 51 CTGGCAGTGACTTGGTGGAG AGTGGGTGCACACACATGAC 20:44885702-44969115 Insertion 0 2-6-1 NA24385_chr_20_44885701_44969115 testbed 20 44886189 44886189 G A 56 19 18 19 11 8 G/A 0.3393 2;2 36.7 1 38.8 1 60.0 18.000 0.3462 0 0 3.000 1 1.3 18 52 TGGGCAGCGGCAATGATGGC TTTCCTTTCATTCAGAGCTG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44951788 44951788 A AG 83 4 48 28 4 0 A/+1 0.0482 2;0 12.3 0 35.2 1 61.6 3.000 0.0405 0 5 6.000 1 0.3 3 74 GCCCCAAGTGGGAGCTGATG GGGGGCCATGACCCTGGTGA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44951788 44951788 A AG 83 4 48 28 4 0 A/+1 0.0482 2;0 12.0 0 34.2 1 60.0 3.000 0.0405 0 5 6.000 1 0.3 3 74 GCCCCAAGTGGGAGCTGATG GGGGGCCATGACCCTGGTGA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44918982 44918983 CT C 88 2 37 45 0 2 T/-1 0.0227 2;0 40.0 0 42.0 0 60.0 4.000 0.0256 0 0 1.000 1 0 2 78 GATGTTTCTGGTTGTCACAA GGGTGGGAGGGTGCTGCTGG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44918999 44918999 G C 89 2 40 47 0 2 G/C 0.0225 2;0 6.0 0 39.5 1 60.0 4.000 0.0235 0 0 2.000 3 2.5 2 85 CAACTGGGTGGGAGGGTGCT CTGGCATCTAGTGGGTAGAG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44886057 44886057 A AAGGGGGAGCAGCGGAGATGCTGAAAAGTGAGGCTGGGCCACAGAATATGTTGATGGGTCAGAAATGGGGTTCAAGGGAAGACAGCAACTGAGTGTGACCATGCCCTCAGCCTGGGCAGCGGCAATGATGGCGTTTCCTTTCATTCAGAGCTGAAGACGGCAGGAAGAGCAGATTTGGGGGGTGATCAGGAACTGACCTTGATGTGTTACAATCAGTTTTTGGACAGGTTAAACCCCGAAAGCCTGTTAGGCATAAAGCAGAGATACGGAGCAGGCTCCTGTACCTATGGCTAGGGT 73 2 36 22 2 0 A/+296 0.0274 2;0 16.5 1 36.9 1 60.0 4.000 0.0370 0.0274 70 2.000 1 2.0 2 54 ACTAGTCAGGGGCTTTGATC AGGGGGAGCAGCGGAGATGC 20:44885702-44969115 Insertion 0 2-0-0 @@ -844,7 +844,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44886324 44886324 G GGAGCAGGCTCCTGTA NA24385_chr_20_44885701_44969115 testbed 20 44886376 44886376 A G 70 2 28 40 0 2 A/G 0.0286 2;0 35.0 0 39.5 1 60.0 4.000 0.0299 0 1 2.000 1 1.0 2 67 CAGGGGTGAGGTCCTGCTGC GGTAGCAATTTGGGAATTTG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44953257 44953257 C CAAGCAGTAGCATGCGACCCGCAGTCCAAATGGATTTTTTAATAATGAATAAGCATTTATTTAACAAGTAATAACAGTTTTACCACCCTCCGGATCCTCGGAAGTCCAGAGGTCTTGCATTAACGCCTTACACAGGCATCTTCTGCTGCTATCTTTTGTCCATTTTTCTGGTTGTTTTTCTCTTATTGATTGGCAAAAGCTCTTTGTATATTAAGGGTATTAACCCTTTACCTGTGATATGCAAATATTTTAAGTCTGTATAATTATTAAGTTTTCCTTAGGGCATATAGAAGTTTAAATGTTTTATGTTGCAAGGTGTTTTTTTGTTTGTTTGTTTTTTGTTTTAATTTAGAGACTTCTGAGTTTTCAGAATTGCTTGTG 111 2 42 41 2 0 C/+380 0.0180 2;0 17.0 1 31.7 1 60.0 4.000 0.0238 0.0180 70 2.000 2 0 2 84 CAGCACTTTAACAGATTTAA AAGCAGTAGCATGCGACCCG 20:44885702-44969115 Insertion 0 2-8-2 NA24385_chr_20_44885701_44969115 testbed 20 44953221 44953221 C T 78 2 34 41 0 2 C/T 0.0256 2;0 63.0 0 39.5 1 60.0 4.000 0.0263 0 1 1.000 1 1.0 2 76 CATCGTAACTGTAAATAAGG ATCTGGGAGTCCTCCCAGCA 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44953220 44953220 G GCATCTGGGAGTCCTCCCAGCACTTTAACAGATTTAACAAGCAGTAGCATGCGACCCGCAGTCCAAATGGATTTTTTAATAATGAATAAGCATTTATTTAACAAGTAATAA 80 8 10 11 0 8 G/+110 0.1000 2;0 14.8 1 44.6 1 65.2 16.000 0.2963 0.0625 70 2.000 1 0 8 27 TCATCGTAACTGTAAATAAG CATCTGGGAGTCCTCCCAGC 20:44885702-44969115 Insertion 0 8-0-0 +NA24385_chr_20_44885701_44969115 testbed 20 44953220 44953220 G GCATCTGGGAGTCCTCCCAGCACTTTAACAGATTTAACAAGCAGTAGCATGCGACCCGCAGTCCAAATGGATTTTTTAATAATGAATAAGCATTTATTTAACAAGTAATAA 80 8 10 11 0 8 G/+110 0.1000 2;0 12.3 1 37.0 1 54.1 16.000 0.2963 0.0625 70 2.000 1 0 8 27 TCATCGTAACTGTAAATAAG CATCTGGGAGTCCTCCCAGC 20:44885702-44969115 Insertion 0 8-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44953223 44953223 T G 78 2 35 41 0 2 T/G 0.0256 2;0 8.0 0 42.0 0 60.0 4.000 0.0274 0 1 1.000 1 1.0 2 73 TCGTAACTGTAAATAAGGCA CTGGGAGTCCTCCCAGCACT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44920365 44920365 C T 93 2 38 53 2 0 C/T 0.0215 2;0 54.0 0 42.0 0 60.0 4.000 0.0222 0 0 1.000 1 1.0 2 90 AGGCCACTTCTGCTCCTCTG GTTGCAGCCTGGGGTGCACC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44887600 44887600 C T 77 39 19 19 25 14 C/T 0.5065 2;2 35.7 1 38.9 1 60.0 38.000 0.5067 0.0130 1 2.000 1 1.7 38 75 CTTCAGGGGGTTTGGGACAG GGCTATTTACCAATAGCGAT 20:44885702-44969115 SNV 0 0 @@ -852,7 +852,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44887654 44887654 G A 79 2 45 32 2 0 NA24385_chr_20_44885701_44969115 testbed 20 44920398 44920398 C T 98 2 42 54 2 0 C/T 0.0204 2;0 10.0 0 39.5 1 60.0 4.000 0.0213 0 2 1.000 1 1.0 2 94 GGTGCACCTCTGCACAGCCC ATGTGCCCACTCTTGTGGCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44953181 44953182 AT A 75 2 35 36 1 1 T/-1 0.0267 2;2 35.0 1 32.0 1 60.0 4.000 0.0286 0 1 2.000 1 2.0 2 70 AACAGGCTTGTGGCTCTGGC TCGGCCACTTTTCTCTGTCA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44887640 44887716 TACAGCCACACTACGTGTACTTGACTCTTCTCTGCCTTGGAAATAGGCCAGATGTGGTCCCTGTTCTTAAGGCAGTC T 75 2 43 32 2 0 A/-76 0.0267 2;0 32.0 1 34.4 1 60.0 4.000 0.0274 0.0267 6 2.000 1 2.0 2 73 TGAAGCATTTCCATACACAT ACAGCCTAGGGTAGAGACAT 20:44885702-44969115 Deletion 0 2-1-1 -NA24385_chr_20_44885701_44969115 testbed 20 44953590 44953590 G GT 85 3 50 30 2 1 G/+1 0.0353 2;2 65.4 1 43.4 0 62.0 6.000 0.0366 0 6 7.000 1 1.4 3 82 AGGTGTTTTTTTGTTTGTTT TTTTTTGTTTTAATTTAGAG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44953590 44953590 G GT 85 3 50 30 2 1 G/+1 0.0353 2;2 63.3 1 42.0 0 60.0 6.000 0.0366 0 6 7.000 1 1.4 3 82 AGGTGTTTTTTTGTTTGTTT TTTTTTGTTTTAATTTAGAG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44920621 44920621 G T 83 2 39 41 2 0 G/T 0.0241 2;0 7.0 0 42.0 0 60.0 4.000 0.0250 0 0 2.000 1 1.0 2 80 AAAATTGTCCTCTAGACAAT CCAAATGTTCCCTGGAGGCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44953357 44953358 GA G 75 3 36 36 3 0 A/-1 0.0400 2;0 11.0 0 42.0 0 60.0 6.000 0.0448 0 1 2.000 1 0 3 67 TACCACCCTCCGGATCCTCG AGTCCAGAGGTCTTGCATTA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44919939 44919939 A C 70 2 30 38 0 2 A/C 0.0286 2;0 26.0 0 37.0 0 60.0 4.000 0.0312 0 0 5.000 4 1.0 2 64 AATAAATAAATAAATAAATA AACAAAAAACAAACAAAACC 20:44885702-44969115 SNV 0 0 @@ -862,18 +862,18 @@ NA24385_chr_20_44885701_44969115 testbed 20 44920215 44920215 G A 79 2 39 37 0 2 NA24385_chr_20_44885701_44969115 testbed 20 44953080 44953080 A C 79 3 46 29 1 2 A/C 0.0380 2;2 5.0 1 31.7 1 60.0 2.000 0.0294 0.0253 2 3.000 1 2.3 2 68 TTACCCAGGCTGCAGGGGCA TTTGGCTCTAAGGCCACTTT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44953052 44953052 A T 77 2 43 32 2 0 A/T 0.0260 2;0 8.0 0 42.0 0 60.0 4.000 0.0278 0 0 1.000 1 1.0 2 72 CCTTGGCCAAACTCCTCTTT GTCAGCCTTACCCAGGCTGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44953039 44953040 CA C 70 2 44 24 0 2 A/-1 0.0286 2;0 58.0 0 37.0 1 60.0 4.000 0.0308 0 2 3.000 1 2.0 2 65 TATGCATTCTGACCCTTGGC AACTCCTCTTTAGTCAGCCT 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44952885 44952885 A AC 37 2 10 16 0 2 A/+1 0.0541 2;0 53.2 1 30.5 1 62.0 4.000 0.1538 0 6 7.000 1 1.6 2 13 CCACCACTGCCTACACCCCC CCCCCCACCCTGGAATGCTA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44952885 44952885 A AC 37 2 10 16 0 2 A/+1 0.0541 2;0 51.5 1 29.5 1 60.0 4.000 0.1538 0 6 7.000 1 1.6 2 13 CCACCACTGCCTACACCCCC CCCCCCACCCTGGAATGCTA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44952834 44952834 G T 43 2 25 16 2 0 G/T 0.0465 2;0 46.0 1 39.5 1 60.0 4.000 0.0488 0 1 4.000 1 3.0 2 41 GTTGCCCTAGGTGTAAAGGT GGGACAGGGTAGTAGGTGCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44887396 44887396 T G 85 4 42 39 4 0 T/G 0.0471 2;0 7.0 0 42.0 0 60.0 8.000 0.0482 0 0 3.000 1 1.2 4 83 ACCGAGCACCTGCTGTGCTC GGGTCCTGTTGAGGCTCTGT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44952955 44952956 AT A 52 2 16 34 2 0 T/-1 0.0385 2;0 41.0 0 39.5 1 60.0 4.000 0.0385 0 3 4.000 1 0 2 52 TCGGTGGTGCCAACCTACCC TTTATAGATGGGGAAACTGA 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44952915 44952915 T TGTGGCAGTGACCTCCAATATCGGTGGTGCCAACCTACCCATTTTATAGATGGGGAAACTGATTTATAGAGATGGGAGTGGAGGTCACATAAGGGATCCGAGCCTATGCATTCTGACCCTTGGCCAAACTCCTCTTTAGTCAGCCTTACCCAGGCTGCAGGGGCAATTTGGCTCTAAGGCCACTTTGTTTGGGACTGAGGGACCACAGGCACAGGACAGGCAGAGGGAGCAAGAAGTGGATCCCACAACAGGCTTGTGGCTCTGGCATTCGGCCACTTTTCTCTGTCATCGTAACTGTAAATAAGGCATCTGGGAGTCCTCCCAGCACTTTAACAGATTTAACAAGCAGTAGCATGCGACCCGCAGTCCAAATGGATTTTTTAATAATGAATAAGCATTTATTTAACAAGTA 68 3 8 27 2 1 T/+411 0.0441 2;2 38.3 1 41.3 1 60.0 6.000 0.0833 0.0441 70 2.000 2 0 3 36 CTGGAATGCTAGCCTGTCGG GTGGCAGTGACCTCCAATAT 20:44885702-44969115 Insertion 0 3-8-2 NA24385_chr_20_44885701_44969115 testbed 20 44921520 44921520 T TGTTCTGGTGCTTCTAGAAGAGCACCAGCCACTGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTCTTCCCCACTAGACTGAAAGAGTCCTTGCAGACAGATCCTGGGTCTTCCTAATCCTAATGTTTTTGTGGTCCACACAGTGCCTGGCACAGAGTAGGTGCTCAGTATATGTTGAGTAAGTAAGAATG 94 2 48 45 1 1 T/+204 0.0213 2;2 67.0 1 40.7 1 56.0 4.000 0.0217 0.0213 70 2.000 1 0 2 92 AATCACTCCCTCTTTTGTTC GTTCTGGTGCTTCTAGAAGA 20:44885702-44969115 Insertion 0 2-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44921555 44921555 T TTG 91 20 28 18 14 6 T/+2 0.2198 2;2 28.4 1 40.7 1 62.6 40.000 0.3226 0 35 18.000 2 2.6 20 62 AGAAGAGCACCAGCCACTGG TGTGTGTGTGTGTGTGTGTG 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44921403 44921403 T TCCTGCCCATTATCCACCTGCCTTAGATCGGAAGGCGATTATCCA 61 2 24 29 0 2 T/+44 0.0328 2;0 73.4 1 44.6 1 0 4.000 0.0400 0.0328 19 2.000 2 0 2 50 GCTGCCCCTCTGAAATGCTC CCTGCCCATTATCCACCTGG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44921555 44921555 T TTG 91 20 28 18 14 6 T/+2 0.2198 2;2 24.1 1 34.5 1 53.0 40.000 0.3226 0 35 18.000 2 2.6 20 62 AGAAGAGCACCAGCCACTGG TGTGTGTGTGTGTGTGTGTG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44921403 44921403 T TCCTGCCCATTATCCACCTGCCTTAGATCGGAAGGCGATTATCCA 61 2 24 29 0 2 T/+44 0.0328 2;0 65.5 1 39.8 1 0 4.000 0.0400 0.0328 19 2.000 2 0 2 50 GCTGCCCCTCTGAAATGCTC CCTGCCCATTATCCACCTGG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44954549 44954549 C T 100 2 40 58 0 2 C/T 0.0200 2;0 12.0 0 42.0 0 60.0 4.000 0.0206 0 1 2.000 2 1.0 2 97 TGGGCAACTGGAGCTCAACT TGCTGGGGAATTCTGGGAGG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44921732 44921732 T TG 86 2 48 35 0 2 T/+1 0.0233 2;0 42.6 1 40.6 1 61.6 4.000 0.0256 0 5 6.000 1 0.5 2 78 GTAAGTAAGAATGAATGAAT GGGGGAGGAGACTGCCAAGA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44921732 44921732 T TG 86 2 48 35 0 2 T/+1 0.0233 2;0 41.5 1 39.5 1 60.0 4.000 0.0256 0 5 6.000 1 0.5 2 78 GTAAGTAAGAATGAATGAAT GGGGGAGGAGACTGCCAAGA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44921837 44922089 CAGTCCTAGCAATGGCCTGTTGCCTCAGCCACCCACACATTCTGTGGACTCAGAGAGTACCTTGGACAGCAACCAGACACTTTATAAAAAATGCTTTTATCCTCCATGAAGCTGCCGCTACAGGGAGCTGTCTGTGCTGACCTGCATCTCCGTGTGTGCATGGAGACATGTGCTTGTAGAAGAGGCCTTGCTTCTTCCATTTTTCAATCCATCCCAGGCCTTTCTGAGGATCAGGCAGGGAACCTATGTTTTT C 117 3 57 60 1 1 A/-252 0.0256 2;2 271.5 1 38.2 1 60.0 6.000 0.0273 0.0171 0 5.000 1 0.5 3 110 CTGAAGACTGCCCCCATCCC CATGTTTATGTTTCTGAATG 20:44885702-44969115 Deletion 0 2-5-2 -NA24385_chr_20_44885701_44969115 testbed 20 44921826 44921826 G GC 117 5 53 56 3 2 G/+1 0.0427 2;2 35.3 1 40.0 1 61.6 10.000 0.0446 0 5 6.000 1 0.6 5 112 TGTCATCTGGTCTGAAGACT CCCCCATCCCCAGTCCTAGC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44921826 44921826 G GC 117 5 53 56 3 2 G/+1 0.0427 2;2 34.4 1 39.0 1 60.0 10.000 0.0446 0 5 6.000 1 0.6 5 112 TGTCATCTGGTCTGAAGACT CCCCCATCCCCAGTCCTAGC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44954617 44954617 A G 90 3 46 41 3 0 A/G 0.0333 2;0 10.3 1 42.0 0 60.0 6.000 0.0345 0 0 3.000 1 1.0 3 87 TCCACTCCCATTCCCCAGCA AGGGTGAGGGAGGAGCTGGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44921801 44921802 CT C 117 2 56 57 2 0 T/-1 0.0171 2;0 27.0 0 34.5 1 60.0 4.000 0.0183 0 1 2.000 1 0 2 109 CCAGGGAAGGAGGCCAACCT TGCTGTCATCTGGTCTGAAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44954411 44954412 CA C 93 2 51 39 2 0 A/-1 0.0215 2;0 41.0 0 34.5 1 60.0 4.000 0.0230 0 1 2.000 1 1.0 2 87 TAGACCCTGAGAAATGGATT AGGGCAAGTAATTTATTTGG 20:44885702-44969115 Deletion 0 0 @@ -884,23 +884,23 @@ NA24385_chr_20_44885701_44969115 testbed 20 44954367 44954368 GT G 97 2 61 34 0 NA24385_chr_20_44885701_44969115 testbed 20 44921631 44921631 C G 103 101 0 0 65 36 G/G 0.9806 0;2 36.0 1 40.3 1 59.7 49.500 0.9802 0 0 1.000 1 2.4 99 101 ACTGAAAGAGTCCTTGCAGA AGATCCTGGGTCTTCCTAAT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44921631 44921631 C A 103 2 0 0 2 0 G/A 0.0194 0;0 50.5 1 39.5 1 60.0 4.000 0.0198 0 0 1.000 1 3.5 2 101 ACTGAAAGAGTCCTTGCAGA AGATCCTGGGTCTTCCTAAT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44921676 44921676 G A 92 89 1 0 54 35 G/A 0.9674 0;2 34.7 1 37.6 1 59.6 7.900 0.9875 0.0217 0 1.000 1 2.2 79 80 ATGTTTTTGTGGTCCACACA TGCCTGGCACAGAGTAGATG 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44953791 44953791 G GC 75 3 29 42 3 0 G/+1 0.0400 2;0 19.5 0 43.1 0 61.6 6.000 0.0417 0 5 6.000 1 0 3 72 AAATAGACAACCTCTCAGCT CCCCCTGCAGGAATGTCCCA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44953791 44953791 G GC 75 3 29 42 3 0 G/+1 0.0400 2;0 19.0 0 42.0 0 60.0 6.000 0.0417 0 5 6.000 1 0 3 72 AAATAGACAACCTCTCAGCT CCCCCTGCAGGAATGTCCCA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44920970 44920971 GA G 62 3 38 21 3 0 A/-1 0.0484 2;0 11.0 0 38.7 1 60.0 6.000 0.0508 0 0 3.000 1 0.3 3 59 CTCTGCTCTCCAGCTGAGCT GGTGGGGTTCGCTCTGCTCC 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44888305 44888305 A AG 88 2 48 36 1 1 A/+1 0.0227 2;2 54.8 1 43.4 0 62.0 4.000 0.0253 0 6 7.000 1 0 2 79 CATGGAGGGCTGCCTGGAGG GGGGGGCATTGGAGCTGATC 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44888305 44888305 A AG 88 2 48 36 1 1 A/+1 0.0227 2;2 53.0 1 42.0 0 60.0 4.000 0.0253 0 6 7.000 1 0 2 79 CATGGAGGGCTGCCTGGAGG GGGGGGCATTGGAGCTGATC 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44888126 44888127 TA T 95 2 39 52 1 1 A/-1 0.0211 2;2 26.0 1 42.0 0 60.0 4.000 0.0222 0 2 3.000 1 1.0 2 90 CCTGTAAGTGCTCTGCAAAT AATGCACATGCTCGCAGATG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44953649 44953649 A T 106 105 0 0 57 48 T/T 0.9906 0;2 38.3 1 38.2 1 60.0 10.667 1.0000 0.0094 0 2.000 1 1.6 96 96 TTGCTTGTGAGCCTGAGGAA CCTGTGGCTCTGTTGCAGAA 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44888180 44888180 C CA 71 3 28 35 0 3 C/+1 0.0423 2;0 47.1 1 43.7 0 62.4 6.000 0.0476 0 7 8.000 1 0.7 3 63 CAATATTTTTTAAACCCAAA AAAAAAATCCCACAACAAAA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44888180 44888180 C CA 71 3 28 35 0 3 C/+1 0.0423 2;0 45.3 1 42.0 0 60.0 6.000 0.0476 0 7 8.000 1 0.7 3 63 CAATATTTTTTAAACCCAAA AAAAAAATCCCACAACAAAA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44888133 44888133 A G 89 42 17 30 22 20 A/G 0.4719 2;2 33.6 1 38.5 1 60.0 13.000 0.4535 0.0112 0 1.000 1 1.7 39 86 GTGCTCTGCAAATTAAATGC CATGCTCGCAGATGAGCAGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44954045 44954045 C CCTGGCTCCATTTCATGCCCCTGTCTAGAGGTGGTAGAATGGAGTGGATAAGACAGTGTGCTCCCTGGGTTTGGATATTGACTTTTGTTTGCTGGCTGTGTGGCCTTGGGTAAGTCGCTTCACCTCTCTGAGCATGTTTCTTCATCTGTAAAACTGGGGCAAGTCCTCCCAGAGCTGTCTGGCAGCATGAATGAAAAACTGATCTAGCAGCCAAAACACATGATTCCTGCCATGTCGTGGGCAATCAATACACGTCAGGCCTCTTGTATCTCCACTGCTGAGTGGAGTGCATTCCATCTTGAGATGCTAAAAAATCTTCAGTGTTCCCACAGTTTGGGTTCCAGAGTAGACCCTGAGAAATGGATT 93 2 28 53 2 0 C/+365 0.0215 2;0 40.0 1 41.1 1 60.0 4.000 0.0247 0.0215 70 3.000 1 0 2 81 GATTGTACCTGGAAGTGAGC CTGGCTCCATTTCATGCCCC 20:44885702-44969115 Insertion 0 2-4-2 NA24385_chr_20_44885701_44969115 testbed 20 44954093 44954094 TA T 91 2 31 58 2 0 A/-1 0.0220 2;0 21.5 1 42.0 1 60.0 4.000 0.0233 0.0110 1 2.000 1 0 2 86 AGGTGGTAGAATGGAGTGGA AGACAGTGTGCTCCCTGGGT 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44954081 44954082 GA G 94 2 32 60 0 2 A/-1 0.0213 2;0 24.5 1 42.0 0 60.0 4.000 0.0230 0 1 2.000 1 0 2 87 GCCCCTGTCTAGAGGTGGTA ATGGAGTGGATAAGACAGTG 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44888520 44888520 G GA 58 4 16 37 1 3 G/+1 0.0690 2;2 43.4 1 37.6 1 62.8 8.000 0.0727 0.0172 8 9.000 1 0.8 4 55 AAAGAACAAAAATGAAATGA AAAAAAAAGAGTTATGGGAA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44888520 44888520 G GA 58 4 16 37 1 3 G/+1 0.0690 2;2 41.5 1 36.0 1 60.0 8.000 0.0727 0.0172 8 9.000 1 0.8 4 55 AAAGAACAAAAATGAAATGA AAAAAAAAGAGTTATGGGAA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44954049 44954049 G A 82 2 29 51 1 1 G/A 0.0244 2;2 20.0 1 42.0 0 60.0 4.000 0.0260 0 0 1.000 1 2.0 2 77 GTACCTGGAAGTGAGCCCTG CTCCATTTCATGCCCCTGTC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44921148 44921148 G A 62 61 1 0 32 29 G/A 0.9839 0;2 32.7 1 40.1 1 60.0 60.000 0.9836 0.0806 0 2.000 2 1.6 60 61 AAAATGGGCAGTTTGGATTA AGAATCGCAAACGCCCAACT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44953877 44953877 C A 94 2 48 44 1 1 C/A 0.0213 2;2 47.5 1 37.0 1 60.0 4.000 0.0220 0 0 1.000 1 1.0 2 91 TGAGAGAGGTCCCAGCCATA AGTCTTTCACAGGTCTATCT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44921182 44921182 T A 55 3 29 23 1 2 T/A 0.0545 2;2 29.7 1 23.7 1 60.0 2.000 0.0385 0.0182 2 1.000 1 1.7 2 52 CCCAACTAACTCTGATGTTC GATTTTCTGACAAATTAGGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44889787 44889787 G T 68 2 31 35 0 2 G/T 0.0294 2;0 26.0 0 42.0 0 60.0 4.000 0.0328 0 0 4.000 1 1.0 2 61 GTTTTCTCATCTGAAAAATG GGATAATAGTATTTACCTCC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44889779 44889779 G GA 62 2 30 30 0 2 G/+1 0.0323 2;0 52.4 0 43.1 0 61.6 4.000 0.0351 0 5 6.000 1 0 2 57 GAGCCTCAGTTTTCTCATCT AAAAATGGGGATAATAGTAT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44889779 44889779 G GA 62 2 30 30 0 2 G/+1 0.0323 2;0 51.0 0 42.0 0 60.0 4.000 0.0351 0 5 6.000 1 0 2 57 GAGCCTCAGTTTTCTCATCT AAAAATGGGGATAATAGTAT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44889836 44889836 G A 70 2 37 31 0 2 G/A 0.0286 2;0 65.0 0 42.0 0 60.0 4.000 0.0299 0 0 1.000 1 1.5 2 67 ACATAAGGTGTAAATGAGAT AGGCATGTGAAGGAATCTGT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44889835 44889835 T TGAGGCATGTGAAGGAATCTGTGGTGTTTGGCAACAAATGTTAGTGAATGTCATCAGAATGACTAGTGTTGTTATTATTATTTCTGGTCCCTGGACAAATACTACTGGACCCTATTATGCACAAAGTATCCTGGCCAGGCGAGGAGAGTTTAGAGATCTTCATCCACTCAGCCATTTATTTATTCAGTCATGTATTTATTTAACAACTGTGCTAATCAGGCCTATAGTGCAGCCTGAGTCAAGAAGAGTGAAGAGTTGCACAGGGTATGGGAGTTGCCTCCTGCTCCAGCGCCAGACTCAGGCTAGGGGAAAGGGTAGTTCAGGAAGAGGCAGCTCATTCATCTGTTCATTCCTTTACTCACTCACTTCTCCCGGCACACCTGGCTTGTATGTGTCCTCTCTCCATGCTTGCCTGGCTTCCAGGGCTGCCAGTGGGAGCGGTGCCTGACAGTCTGGCTCCTGTCTGCCCCCACTGAGTCCCAGCGGCACTGTGCCTGCTGGATCCTGAGCCCAGAGCTCTCTGTGCTTGGCTGCCATCTTCTCCCTGGGGGAAAATTATTTCTACCAGCTCAGTGCTCTCCTTTTGGGCCAGAATAGCTCCCGGTGTAATGCAGGAGCTATTGAGGCATGGAGGGGTGCTGGGAAGAGCCACTTTGTCTCTGCTCACCTCTCATTGCCTCCTACCCCTAGGTATAAGGCACGATGGAGCCACAAATGAAG 80 2 37 34 0 2 T/+719 0.0250 2;0 68.0 1 41.6 1 60.0 4.000 0.0290 0.0250 70 2.000 1 0 2 69 AACATAAGGTGTAAATGAGA GAGGCATGTGAAGGAATCTG 20:44885702-44969115 Insertion 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44922593 44922593 G A 69 2 33 34 0 2 G/A 0.0290 2;0 60.0 0 42.0 0 60.0 4.000 0.0299 0 2 1.000 1 1.0 2 67 GAACCTGGGAGGCGGAGGTT CAGTGAGCCGAGACTGCACC 20:44885702-44969115 SNV 0 0 @@ -917,11 +917,11 @@ NA24385_chr_20_44885701_44969115 testbed 20 44922781 44922781 T A 95 3 54 37 0 3 NA24385_chr_20_44885701_44969115 testbed 20 44922830 44922830 A AGCAGGACTGGATGTCCTCATTCAGCTGCGTCCTTCCTGTGGAGCCCTAGTTAAGCCCCTTCCCTTCCTTGAGTCTCTGGTTGCAAACGAAGTGGGTTCTGTTCTCTAAGTTCTGGTTCAGCTGTGGGGTCCTGAGTTTCTAGGATTCTATAATGATGCTGAGGAGCCATGCAACCTCCTCTTTCTTCCTCCTGCCCCAAGGAAGGGGCTGGGGCCTCAGACAGGAGATGGGGACACACCAGAGCTTCCCAGGGGTGGTAGGAGGGTGCGGAAAGAGGAAGATCTGTCCTAGCTGGGGTGTGAGAGACAAGTTAACAGCTCAATTGTTATTTCAATTACACGGATTATTTGAAAACAATGTTTATGAGTTTCATCACTGACAT 92 2 49 42 2 0 A/+382 0.0217 2;0 61.0 1 41.3 1 60.0 4.000 0.0235 0.0217 70 4.000 1 0.5 2 85 AGCTTCAACCTTCACCTAAA GCAGGACTGGATGTCCTCAT 20:44885702-44969115 Insertion 0 2-5-1 NA24385_chr_20_44885701_44969115 testbed 20 44890049 44890049 A C 80 2 34 43 0 2 A/C 0.0250 2;0 7.0 0 42.0 0 60.0 4.000 0.0274 0 3 1.000 1 1.0 2 73 TTTATTTAACAACTGTGCTA TCAGGCCTATAGTGCAGCCT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44955583 44955584 CT C 73 2 36 35 0 2 T/-1 0.0274 2;0 10.0 0 42.0 0 60.0 4.000 0.0317 0 0 2.000 1 0.5 2 63 TTCTGCATTTTGCCTTTGAG CAGAGAAGCCAAGTGACTCA 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44922658 44922658 C CA 68 4 26 36 3 1 C/+1 0.0588 2;2 57.7 1 43.7 0 62.4 8.000 0.0635 0 7 8.000 1 1.0 4 63 AGCGAGGCTCCATCTCAAAA AAAAAAACACTTATATTATG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44922658 44922658 C CA 68 4 26 36 3 1 C/+1 0.0588 2;2 55.5 1 42.0 0 60.0 8.000 0.0635 0 7 8.000 1 1.0 4 63 AGCGAGGCTCCATCTCAAAA AAAAAAACACTTATATTATG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44889909 44889909 T TTATTATTTCTGGTCCCTGGACAAATACTACTGGACCCTATTATGCACAAAGTATCCTGGCCAGGCGAGGAGAGTTTAGAGATCTTCATCCACTCAGCCATTTATTTATTCAGTCATGTATTTATTTAACAACTGTGCTAATCAGGCCTATAGTGCAGCCTGAGTCAAGAAGAGTGAAGAGTTGCACAGGGTATGGGAGTTGCCTCCTGCTCCAGCGCCAGACTCAGGCTAGGGGAAAGGGTAGTTCAGGAAGAGGCA 78 2 46 31 1 1 T/+257 0.0256 2;2 18.5 1 41.6 1 60.0 4.000 0.0256 0.0256 70 3.000 3 0 2 78 CAGAATGACTAGTGTTGTTA TATTATTTCTGGTCCCTGGA 20:44885702-44969115 Insertion 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44889881 44889881 A T 76 3 43 30 3 0 A/T 0.0395 2;0 59.3 1 32.0 1 60.0 6.000 0.0423 0 0 2.000 1 3.3 3 71 TTTGGCAACAAATGTTAGTG ATGTCATCAGAATGACTAGT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44922717 44922717 T C 80 79 0 0 39 40 C/C 0.9875 0;2 33.3 1 38.5 1 60.0 12.167 1.0000 0.0125 0 5.000 1 1.5 73 73 CAGTTTCTTCACTTGTAAAA GGGGGTAGGGGTAGGTAGAT 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44954796 44954796 C CT 72 2 26 42 1 1 C/+1 0.0278 2;2 36.4 1 43.1 0 61.6 4.000 0.0294 0 5 6.000 1 0 2 68 TAAAGATGAGGTCCTGACAC TTTTTGGAAGGGCAGGTGAA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44954796 44954796 C CT 72 2 26 42 1 1 C/+1 0.0278 2;2 35.5 1 42.0 0 60.0 4.000 0.0294 0 5 6.000 1 0 2 68 TAAAGATGAGGTCCTGACAC TTTTTGGAAGGGCAGGTGAA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44954857 44954857 T C 62 3 16 41 3 0 T/C 0.0484 2;0 31.3 1 31.7 1 60.0 2.000 0.0364 0.0161 0 1.000 1 1.7 2 55 GGCCCCAAAAGATTTAAAGG AGGATTCGGTGGCAGAAGGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44889341 44889342 CA C 65 2 28 35 0 2 A/-1 0.0308 2;0 13.0 0 42.0 0 60.0 4.000 0.0339 0 0 2.000 1 0 2 59 CCGGAGTCTGGCTGGATGGC GCATGTCCTTTCTTGATTTC 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44889286 44889286 G A 65 2 32 31 1 1 G/A 0.0308 2;2 30.5 1 42.0 0 60.0 4.000 0.0339 0 0 2.000 1 1.5 2 59 TTCCCTCTCACTGGGGAGTT CCAGCTGTGGGCATCACTGC 20:44885702-44969115 SNV 0 0 @@ -951,7 +951,7 @@ NA24385_chr_20_44885701_44969115 testbed 20 44956261 44956261 A C 85 3 29 53 0 3 NA24385_chr_20_44885701_44969115 testbed 20 44956280 44956280 A G 94 94 0 0 35 59 G/G 1.0000 0;2 34.6 1 39.3 1 60.0 22.500 1.0000 0.0213 0 3.000 1 1.4 90 90 CAGCCTTCTACCCTGGAAAC CCCTGGGCCCTGGGGTGGAG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44923511 44923511 T G 74 2 38 34 0 2 T/G 0.0270 2;0 6.0 0 39.5 1 60.0 4.000 0.0278 0 0 1.000 1 3.0 2 72 CAAGAACATATCTGACCCAC GCACCTTCCCGGTGCCCAGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44956250 44956250 T TCTGAAGCCCCAGCCTTCTACCCTGGAAACACCCTGGGCCCTGGGGTGGAGGAGAAGGAAGGGAGCCCTTGGTGGGAGCTACAGAAAATTAAAGCTAAAAATATGTCTGGGTCAGACCTCAGTTTCCCCATCGGTGAAATGGGTGCAGGCAGTAACACCCCCACCTTAGGCCTATTTGAGCGTAACGGGGTTTTTAAAGTTGGGATTCTAGGCCCCTCACAAACCTGAAAGACATTCACTGTGGGTGCTGTCTGGACTCTGAGCAACTTACTTAACCCCTCCATGCCTCAGTTTACTCGTCTGTGCAATGAACGTAATCATACTTAATGCACTGGGCTGTAG 100 3 30 53 2 1 T/+341 0.0300 2;2 13.0 1 38.5 1 60.0 6.000 0.0375 0.0300 70 2.000 2 3.3 3 80 CACTTGCACTGAATGCGCCC CTGAAGCCCCAGCCTTCTAC 20:44885702-44969115 Insertion 0 3-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44891044 44891044 G GC 112 8 57 44 3 5 G/+1 0.0714 2;2 49.3 1 41.8 1 62.0 16.000 0.0800 0.0089 6 7.000 1 0.3 8 100 GACCTGGGGCCCCCAGTCTT CCCCCCGCCCCAGGCTATAT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44891044 44891044 G GC 112 8 57 44 3 5 G/+1 0.0714 2;2 47.8 1 40.4 1 60.0 16.000 0.0800 0.0089 6 7.000 1 0.3 8 100 GACCTGGGGCCCCCAGTCTT CCCCCCGCCCCAGGCTATAT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44891032 44891032 G C 118 2 71 45 0 2 G/C 0.0169 2;0 32.0 0 37.0 1 60.0 4.000 0.0182 0 0 5.000 1 2.0 2 110 TCTGCAAAGGCTGACCTGGG CCCCCAGTCTTGCCCCCCGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44956425 44956425 T G 72 3 33 36 3 0 T/G 0.0417 2;0 11.3 1 25.0 1 60.0 2.000 0.0290 0.0278 0 3.000 1 2.3 2 69 CACCCCCACCTTAGGCCTAT TGAGCGTAACGGGGTTTTTA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44890910 44890910 C T 95 52 19 22 28 24 C/T 0.5474 2;2 31.9 1 36.1 1 60.0 6.429 0.5422 0.0316 0 2.000 1 2.1 45 83 GATATGCCAAAGCTTCTGGG TTGGTAGCTGAACATCACCC 20:44885702-44969115 SNV 0 0 @@ -964,25 +964,25 @@ NA24385_chr_20_44885701_44969115 testbed 20 44923085 44923085 T C 93 8 43 41 4 4 NA24385_chr_20_44885701_44969115 testbed 20 44922918 44922919 GA G 75 2 31 42 2 0 A/-1 0.0267 2;0 40.0 0 42.0 0 60.0 4.000 0.0282 0 1 2.000 1 0 2 71 TTGAGTCTCTGGTTGCAAAC AGTGGGTTCTGTTCTCTAAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44890238 44890238 C A 56 2 23 31 2 0 C/A 0.0357 2;0 19.0 0 42.0 0 60.0 4.000 0.0370 0 0 1.000 1 1.0 2 54 GCTTGTATGTGTCCTCTCTC ATGCTTGCCTGGCTTCCAGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44956088 44956089 CT C 82 2 47 33 1 1 T/-1 0.0244 2;2 30.5 1 42.0 0 60.0 4.000 0.0256 0 0 5.000 1 0 2 78 CTAAGGAGGTGAGGTCCTCC CCAGGTGAGCAGTGTGGGAC 20:44885702-44969115 Deletion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44923322 44923322 T TC 78 3 38 35 2 1 T/+1 0.0385 2;2 27.9 1 40.1 1 62.0 6.000 0.0448 0.0128 6 7.000 1 0.3 3 67 CTCTCCCTTCTCCACAGGGC CCCCCCAACCTCTGCTGGGG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44923322 44923322 T TC 78 3 38 35 2 1 T/+1 0.0385 2;2 27.0 1 38.8 1 60.0 6.000 0.0448 0.0128 6 7.000 1 0.3 3 67 CTCTCCCTTCTCCACAGGGC CCCCCCAACCTCTGCTGGGG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44923384 44923385 CA C 65 2 29 33 1 1 A/-1 0.0308 2;2 22.0 1 42.0 0 60.0 4.000 0.0333 0 1 2.000 1 0 2 60 GAAAGAGGGAAAGAAAGGGG AGGAAAAGGCTACTCTGTAG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44890607 44890608 TG T 82 2 28 52 2 0 G/-1 0.0244 2;0 12.0 0 42.0 0 60.0 4.000 0.0250 0 1 3.000 2 2.5 2 80 AACTCACATGAGCATGTGTG GCTGAACACATGCATGCATG 20:44885702-44969115 Deletion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44956024 44956024 G A 70 2 34 34 0 2 G/A 0.0286 2;0 61.0 0 34.5 1 60.0 4.000 0.0303 0 0 1.000 1 1.5 2 66 TTCCACTGTGGACTTGCAGA CTGTGTGGTTTGCATCTGGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44957341 44957341 C A 78 31 22 25 12 19 C/A 0.3974 2;2 30.8 1 34.2 1 60.0 6.750 0.3803 0.0256 0 1.000 1 1.5 27 71 GCCCCCGCTTCCCCTTCCCA TCCCCTCCTCTCAGTCCTAA 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44924568 44924568 A AT 78 2 27 47 0 2 A/+1 0.0256 2;0 23.8 0 43.4 0 62.0 4.000 0.0317 0 6 7.000 1 0 2 63 TGTGCTGCCACTCTTGGCTA TTTTTTAATTTTTGTAGAGA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44924568 44924568 A AT 78 2 27 47 0 2 A/+1 0.0256 2;0 23.0 0 42.0 0 60.0 4.000 0.0317 0 6 7.000 1 0 2 63 TGTGCTGCCACTCTTGGCTA TTTTTTAATTTTTGTAGAGA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44957225 44957225 T C 60 2 21 35 2 0 T/C 0.0333 2;0 32.0 0 42.0 0 60.0 4.000 0.0455 0 0 3.000 1 2.0 2 44 CGTCAACCATAGAATTCACC TTCCTCTCGAGAGACCCATT 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44924472 44924472 G GCTCACCACAGCTTCAAACTCCAGGGCTCAAGCGATCCTCCTATCTCAGCCTCTGAAGTAACTGGGATTACAGTCGTGTGCTGCCACTCTTGGCTAATTTTTTAATTTTTGTAGAGATGGGGGTCTTGCTATGTTGCCCAGGCTTGTCTGAAACTCCTGGCCTCAAGTGATC 93 2 54 32 1 1 G/+171 0.0215 2;2 54.0 1 39.9 1 41.5 4.000 0.0235 0.0215 70 2.000 1 1.0 2 85 AGTGCAGTGGCATGATCATA CTCACCACAGCTTCAAACTC 20:44885702-44969115 Insertion 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44924424 44924424 C CAGGGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCATAGCTCACCACAGCTTCAAACTCCAGGGCTCAAGCGATCCTCCTATCTCAGCCTCTGAAGTAACTGGGATTACAGTCGTGTGCTGCCACTCTTGGCTAATTTTTTAATTTATGTAGAGATGGGGGTCTTGCT 92 2 44 22 2 0 C/+177 0.0217 2;0 22.0 1 41.4 1 60.0 4.000 0.0294 0.0217 70 1.000 1 0 2 68 CATCTATTTATTTGTAGAGG AGGGTCTCGCTCTGTCACCC 20:44885702-44969115 Insertion 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44924423 44924423 G GCAGGGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCATAGCTCACCACAGCTTCAAACTCCAGGGCTCAAGCGATCCTCCTATCTCAGCCTCTGAAGTAACTGGGATTACAGTCGTGTGCTGCCACTCTTGGCTAATTTTTTAATTTTTGTAGAGATGGGGGTCTTGCTATGTTGCCCAGGCTTGTCTGAAACTCCTGGCCTCAAGTGATCCTCCTGCCTCGGCCTCTCAAAGTGCTGGGATCACAGGTGGGAACCACCATGCCGGGCCTGTTGCCTCATCTTTTTATATCAGGAGCCTCCCAGGTGCTTGTCCTGAAACTCCTGGGCCCTCTTTTTGTATCTTCGCAGTAGGGGAGTGGCAGACAGATATA 88 4 43 22 4 0 G/+381 0.0455 2;0 46.0 1 37.9 1 0 8.000 0.0597 0.0455 70 2.000 2 0.2 4 67 TCATCTATTTATTTGTAGAG CAGGGTCTCGCTCTGTCACC 20:44885702-44969115 Insertion 0 4-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44924417 44924417 G GTAGAGGCAGGGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTTTTTTCAAGCAGAAGACGGCATACGAGATACGGTGCAGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTT 63 2 30 15 0 2 G/+117 0.0317 2;0 55.3 1 53.1 1 63.7 4.000 0.0455 0.0317 44 3.000 1 0 2 44 GTTGCCTCATCTATTTATTT TAGAGGCAGGGTCTCGCTCT 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44924417 44924417 G GTAGAGGCAGGGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTTTTTTCAAGCAGAAGACGGCATACGAGATACGGTGCAGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTT 63 2 30 15 0 2 G/+117 0.0317 2;0 43.0 1 41.3 1 49.5 4.000 0.0455 0.0317 44 3.000 1 0 2 44 GTTGCCTCATCTATTTATTT TAGAGGCAGGGTCTCGCTCT 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44891774 44891774 G GCTCACACTTCAGTGCTGTGATCAGAGTTTGCACTACTGAATGTGTGAGTGAATCCATGAAGGGATATGTGGATGGATGGATGAATGGATGAACGGAAGGACACATGATGGGGTTGCCTGGTTACTGCTGTACCCCATCCCTCAGACTGCTCTTCTATGCTTGTTCCACTTATGGATTCA 98 3 44 54 3 0 G/+179 0.0306 2;0 29.3 1 40.2 1 60.0 6.000 0.0306 0.0306 70 1.000 1 2.3 3 98 TTCTTGCTCTCTGTCCTTCA CTCACACTTCAGTGCTGTGA 20:44885702-44969115 Insertion 0 3-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44924535 44924535 G A 82 2 40 40 2 0 G/A 0.0244 2;0 5.0 0 37.0 1 60.0 4.000 0.0256 0 3 3.000 1 1.0 2 78 TCTCAGCCTCTGAAGTAACT GGATTACAGTCGTGTGCTGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44892079 44892079 A G 117 2 66 48 2 0 A/G 0.0171 2;0 7.0 0 42.0 0 60.0 4.000 0.0194 0 11 1.000 1 1.0 2 103 GTGTGTGTGCGTGTGTGTGC TGTGTGTGTGTGAAGCAGGG 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44892074 44894341 T 119 3 68 49 1 2 TTTTGTTCT/-2260CGTTGTTC 0.0256 2;2 18.3 1 41.7 1 60.0 6.000 0.0256 0.0256 0 0 0 0 3 117 TGTGTGTGTGTGTGCGTGTG TGCATGTGTTCCTTTTCACT 20:44885702-44969115 DEL 0 3-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44957629 44957629 C T 60 2 29 29 2 0 C/T 0.0333 2;0 16.0 0 42.0 0 60.0 4.000 0.0345 0 0 2.000 1 1.0 2 58 GGCCTTCCATAGCTCCCTGT TTGCACAAGACTCAGTTTCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44957618 44958036 T 86 2 30 27 0 2 T/ 0.0233 2;0 18.0 1 41.9 1 60.0 4.000 0.0370 0.0233 0 1.000 1 0 2 54 AGCCCTGCTGTGGCCTTCCA GGTCTGGGAGGTGCAGGTGA 20:44885702-44969115 INV 0 2-0-0 -NA24385_chr_20_44885701_44969115 testbed 20 44892045 44892045 C CTG 99 31 13 12 18 13 C/+2 0.3131 2;2 42.2 1 42.1 1 61.8 62.000 0.3735 0 22 12.000 2 0.7 31 83 TGTCCCCATGGCCTTCCATT TGTGTGTGTGTGTGTGTGTG 20:44885702-44969115 Insertion 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44892045 44892045 C CTGTGTG 99 27 13 12 10 17 C/+6 0.2727 2;2 46.6 1 41.1 1 60.8 54.000 0.3253 0 22 14.000 2 0.8 27 83 TGTCCCCATGGCCTTCCATT TGTGTGTGTGTGTGTGTGTG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44892045 44892045 C CTG 99 31 13 12 18 13 C/+2 0.3131 2;2 37.6 1 37.4 1 55.0 62.000 0.3735 0 22 12.000 2 0.7 31 83 TGTCCCCATGGCCTTCCATT TGTGTGTGTGTGTGTGTGTG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44892045 44892045 C CTGTGTG 99 27 13 12 10 17 C/+6 0.2727 2;2 41.6 1 36.7 1 54.3 54.000 0.3253 0 22 14.000 2 0.8 27 83 TGTCCCCATGGCCTTCCATT TGTGTGTGTGTGTGTGTGTG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44957582 44957582 G C 70 70 0 0 34 36 C/C 1.0000 0;2 38.0 1 39.7 1 59.7 34.000 1.0000 0 1 2.000 1 1.7 68 68 ATGGGCTGTCATACAAAGCC GCAGGTCACCACCACAGCCC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44924821 44924821 A G 98 3 53 42 3 0 A/G 0.0306 2;0 8.0 0 42.0 0 60.0 6.000 0.0326 0 1 2.000 1 1.0 3 92 TATAAGAGAAGAGGCACCTG GGATGTTACCAATAAGTGGA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44924893 44924893 A G 94 2 47 44 2 0 A/G 0.0213 2;0 7.0 0 42.0 0 60.0 4.000 0.0227 0 0 2.000 1 1.5 2 88 CGAAGTCCTGATCTGGCTGT AGGCAGGGAGGGGCATCTTC 20:44885702-44969115 SNV 0 0 @@ -992,9 +992,9 @@ NA24385_chr_20_44885701_44969115 testbed 20 44957441 44957442 GA G 73 3 39 30 0 NA24385_chr_20_44885701_44969115 testbed 20 44891920 44892362 C 81 2 40 36 1 1 C/ 0.0247 2;2 26.0 1 34.2 1 60.0 4.000 0.0260 0.0247 0 2.000 2 1.0 2 77 GCTGTACCCCATCCCTCAGA AGTGTGAGGGGAGAAGCTAG 20:44885702-44969115 INV 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44924782 44924782 T A 84 2 47 35 2 0 T/A 0.0238 2;0 17.0 0 42.0 0 60.0 4.000 0.0250 0 0 1.000 1 2.0 2 80 CTCTTTTTGTATCTTCGCAG AGGGGAGTGGCAGACAGATA 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44924796 44925045 ACAGATATAAGAGAAGAGGCACCTGAGGATGTTACCAATAAGTGGACGTCTGTAGATCAGTGCTGGTTCTCACAGCCCGAAGTCCTGATCTGGCTGTAAGGCAGGGAGGGGCATCTTCATTAATTTGGTACCCACTGTGAGGACACTATTTGCTCATTATCTCGTTCATTCCAGCAAGGGAGGTCTTACACTCCTCATTTTACAGATGAGTAAACAGAGGCTCAGAAAGTCAAACACTTGCCCAAGGCCA GCAGGGAGGGGCATCTTCATTAATTTGGTACCCACTGTGAGGACACTATTTGCTCATTATCTCGTTCAT 94 3 49 42 3 0 A/-250iGCAGGGAGGGGCATCTTCATTAATTTGGTACCCACTGTGAGGACACTATTTGCTCATTATCTCGTTCAT 0.0319 2;0 55.7 1 37.2 1 60.0 6.000 0.0341 0.0319 0 1.000 1 0 3 88 TCGCAGTAGGGGAGTGGCAG TCCAGCTAAAATGTATCCAA 20:44885702-44969115 Complex 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44924764 44924764 C CT 80 3 38 37 3 0 C/+1 0.0375 2;0 43.1 0 43.1 0 61.6 6.000 0.0385 0 5 6.000 1 0.3 3 78 TCCTGAAACTCCTGGGCCCT TTTTTGTATCTTCGCAGTAG 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44924764 44924764 C CT 80 3 38 37 3 0 C/+1 0.0375 2;0 42.0 0 42.0 0 60.0 6.000 0.0385 0 5 6.000 1 0.3 3 78 TCCTGAAACTCCTGGGCCCT TTTTTGTATCTTCGCAGTAG 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44956845 44956845 C T 106 2 59 45 0 2 C/T 0.0189 2;0 46.0 0 42.0 0 60.0 4.000 0.0194 0 1 5.000 1 1.0 2 103 AGTCCTCAAACATCCCCTCC CCATCAAGGCTGCCACATCC 20:44885702-44969115 SNV 0 0 -NA24385_chr_20_44885701_44969115 testbed 20 44956842 44956842 T TC 103 2 59 40 0 2 T/+1 0.0194 2;0 9.2 1 43.1 1 61.6 4.000 0.0215 0.0097 5 6.000 1 1.0 2 93 CCAAGTCCTCAAACATCCCC CCCCCATCAAGGCTGCCACA 20:44885702-44969115 Insertion 0 0 +NA24385_chr_20_44885701_44969115 testbed 20 44956842 44956842 T TC 103 2 59 40 0 2 T/+1 0.0194 2;0 9.0 1 42.0 1 60.0 4.000 0.0215 0.0097 5 6.000 1 1.0 2 93 CCAAGTCCTCAAACATCCCC CCCCCATCAAGGCTGCCACA 20:44885702-44969115 Insertion 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44924086 44924086 G GCTAGGCACTGTTCTAAGTACTTTACAAACATTAGCTTGTTTCATTCTCACCACAAGCCTGTAACGCAGCTACTGTGATTATCATCTCCACTTTACAGATGGGGAAACTGAGGTGGTTAAGTAACTTGTGTAAGGACAGGCAGCTAGGAAGGGGGGCAGCTCAGGGAGCAGAACCCAGGAAGTCCAGCTTCCAAAATCCAAGTCCAGCTTCCAGAATCCAAGCTCTGGGCTGCCATCCTCATTCCTCCTGATAGGTGATGATCCAGCTTAAGTCTTGCCTGATAGTCAAAAGACT 54 2 26 28 0 2 G/+294 0.0370 2;0 24.0 1 41.0 1 60.0 4.000 0.0370 0.0370 70 2.000 2 6.0 2 54 CTTACATAGGGCTTATGAAT CTAGGCACTGTTCTAAGTAC 20:44885702-44969115 Insertion 0 2-0-0 NA24385_chr_20_44885701_44969115 testbed 20 44924057 44924057 A T 71 2 34 35 1 1 A/T 0.0282 2;2 19.5 1 32.0 1 60.0 4.000 0.0303 0 0 3.000 1 4.5 2 66 CCCTCATCACATTTACTTTT AAGAAACCCTTACATAGGGC 20:44885702-44969115 SNV 0 0 NA24385_chr_20_44885701_44969115 testbed 20 44891281 44891281 C T 119 3 60 55 2 1 C/T 0.0252 2;2 7.3 1 31.7 1 60.0 2.000 0.0182 0 0 1.000 1 1.7 2 110 TGTTATTTGCCTCCATTTTT AGATAAGGAAACTGAGACAC 20:44885702-44969115 SNV 0 0 diff --git a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_cnt0.bam;chr11;3379106-3382196;-f 0.001.txt b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_cnt0.bam;chr11;3379106-3382196;-f 0.001.txt index 0835998..7270391 100644 --- a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_cnt0.bam;chr11;3379106-3382196;-f 0.001.txt +++ b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24385_cnt0.bam;chr11;3379106-3382196;-f 0.001.txt @@ -1,9 +1,9 @@ Simple,GRCh37.fa,NA24385_cnt0.bam,chr11,3379106,3382196,-f 0.001 NA24385_cnt0 testbed 11 3381286 3381286 T TTTTAGTAAGGACTGAGCAAGTTTTAATGACGTTGTTACATTCTTGACACTTGTAAGGTTTCTCTCCAGTGTCAATGTTCTCAGGTTCAGTAAAGTGTGAGCACTGGATAAAGGTTTTGCCACATTCTCCACATTTTTGGAATTTTTTTCCAGTGTGAATTTTCTGATGTTCAGTTAGGAATGAGAGCATTTGAAAGGATTTGCCACATTCTTGACATTTGAAAGG 105 2 43 35 1 1 T/+225 0.0190 2;2 60.0 1 41.6 1 60.0 4.000 0.0263 0.0190 70 5.000 1 0 2 76 CCCTCCGGCATAAATTCTAT TTTAGTAAGGACTGAGCAAG 11:3379107-3382196 Insertion 0 2-1-1 -NA24385_cnt0 testbed 11 3379241 3379241 T TTATAGGGCCAGAACTAGGTCGGGGTGTGGGAGCTGAGTTGGGGGTGCAGGAGAACTGGGTTGGGGTGGGGGAGCTTAGTCGAGGGTGCAGGTGTCTTGTCTGCATCCTGGAGATGTTTTTTGCCAGCTTTGTTATGCGAGGTGAACAGACATGTTAACCGCATCCTG 65 2 21 23 2 0 T/+167 0.0308 2;0 95.7 1 46.4 1 9.3 4.000 0.0455 0.0308 26 5.000 1 0.6 2 44 TTACAGACTATAGCAGGTTT TATAGGGCCAGAACTAGGTC 11:3379107-3382196 Insertion 0 2-0-0 +NA24385_cnt0 testbed 11 3379241 3379241 T TTATAGGGCCAGAACTAGGTCGGGGTGTGGGAGCTGAGTTGGGGGTGCAGGAGAACTGGGTTGGGGTGGGGGAGCTTAGTCGAGGGTGCAGGTGTCTTGTCTGCATCCTGGAGATGTTTTTTGCCAGCTTTGTTATGCGAGGTGAACAGACATGTTAACCGCATCCTG 65 2 21 23 2 0 T/+167 0.0308 2;0 82.0 1 39.8 1 8.0 4.000 0.0455 0.0308 26 5.000 1 0.6 2 44 TTACAGACTATAGCAGGTTT TATAGGGCCAGAACTAGGTC 11:3379107-3382196 Insertion 0 2-0-0 NA24385_cnt0 testbed 11 3381363 3381788 T 89 2 46 41 2 0 T/ 0.0225 2;0 38.0 1 36.5 1 60.0 4.000 0.0241 0.0225 0 2.000 1 0 2 83 GTTTCTCTCCAGTGTCAATG GACATAGCTGAAAAAAAAAA 11:3379107-3382196 INV 0 2-0-0 NA24385_cnt0 testbed 11 3379268 3379268 C T 57 56 0 0 31 25 T/T 0.9825 0;2 27.9 1 33.5 1 58.2 3.667 1.0000 0 0 3.000 1 2.0 44 44 GCCAGAACTAGGTCGGGGTG GGGAGCTGAGTTGGGGGTGC 11:3379107-3382196 SNV 0 0 -NA24385_cnt0 testbed 11 3381418 3381418 A AT 80 2 44 33 2 0 A/+1 0.0250 2;0 60.6 0 43.1 0 61.6 4.000 0.0267 0 5 6.000 1 0 2 75 GGTTTTGCCACATTCTCCAC TTTTTGGAATTTTTTTCCAG 11:3379107-3382196 Insertion 0 0 +NA24385_cnt0 testbed 11 3381418 3381418 A AT 80 2 44 33 2 0 A/+1 0.0250 2;0 59.0 0 42.0 0 60.0 4.000 0.0267 0 5 6.000 1 0 2 75 GGTTTTGCCACATTCTCCAC TTTTTGGAATTTTTTTCCAG 11:3379107-3382196 Insertion 0 0 NA24385_cnt0 testbed 11 3381492 3381492 C A 94 2 57 35 0 2 C/A 0.0213 2;0 8.0 0 34.5 1 60.0 4.000 0.0217 0 0 2.000 2 2.0 2 92 GCATTTGAAAGGATTTGCCA ATTCTTGACATTTGAAAGGT 11:3379107-3382196 SNV 0 0 NA24385_cnt0 testbed 11 3381499 3381499 G A 102 2 52 46 2 0 G/A 0.0196 2;0 63.0 0 42.0 0 60.0 4.000 0.0211 0 0 1.000 1 1.0 2 95 AAAGGATTTGCCACATTCTT ACATTTGAAAGGTTTCTCTC 11:3379107-3382196 SNV 0 0 NA24385_cnt0 testbed 11 3381499 3381499 G C 102 2 52 46 0 2 G/C 0.0196 2;0 15.0 0 37.0 0 60.0 4.000 0.0211 0 0 1.000 1 2.0 2 95 AAAGGATTTGCCACATTCTT ACATTTGAAAGGTTTCTCTC 11:3379107-3382196 SNV 0 0 @@ -20,14 +20,14 @@ NA24385_cnt0 testbed 11 3379718 3379718 C CATATCTCTGACGCAGCAACAACTGACCATGTGTTTTC NA24385_cnt0 testbed 11 3379826 3379827 CA C 75 2 41 31 2 0 A/-1 0.0267 2;0 20.0 0 42.0 0 60.0 4.000 0.0274 0 4 5.000 1 0 2 73 TGACATCAATATTCGCTTTT AAAATTTAACATTTTTTCAA 11:3379107-3382196 Deletion 0 0 NA24385_cnt0 testbed 11 3379834 3379838 TAACA AACAT 75 2 42 30 0 2 T/-7iTTAACAT 0.0267 2;0 43.5 1 41.4 1 60.0 4.000 0.0290 0 3 5.000 1 0 2 69 ATATTCGCTTTTCAAAAATT TTTTTTCAATGCAAAAAAGT 11:3379107-3382196 Complex 0 0 NA24385_cnt0 testbed 11 3381843 3381843 A G 100 97 1 2 41 56 A/G 0.9700 2;2 35.5 1 35.9 1 58.9 7.083 0.9770 0.0600 1 2.000 2 2.1 85 87 CTTACTAGACACAGATGAAT CACTTTATGAATCTAATCTA 11:3379107-3382196 SNV 0 0 -NA24385_cnt0 testbed 11 3381897 3381897 T TA 110 2 46 59 2 0 T/+1 0.0182 2;0 13.4 0 43.4 0 62.0 4.000 0.0220 0 6 7.000 1 0 2 91 GGTACATTAGCAAAATGGCA AAAAAATACCACAGGCCCTA 11:3379107-3382196 Insertion 0 0 +NA24385_cnt0 testbed 11 3381897 3381897 T TA 110 2 46 59 2 0 T/+1 0.0182 2;0 13.0 0 42.0 0 60.0 4.000 0.0220 0 6 7.000 1 0 2 91 GGTACATTAGCAAAATGGCA AAAAAATACCACAGGCCCTA 11:3379107-3382196 Insertion 0 0 NA24385_cnt0 testbed 11 3382069 3382069 C G 71 71 0 0 36 35 G/G 1.0000 0;2 33.5 1 39.1 1 60.0 34.500 1.0000 0.0563 0 5.000 1 1.5 69 69 GTTACGTTTACCCACTGCAG CCCCGCTCCTCCGCAGTATA 11:3379107-3382196 SNV 0 0 NA24385_cnt0 testbed 11 3380007 3380008 TC T 42 37 0 1 18 19 C/-1 0.8810 0;2 12.9 1 38.7 1 59.4 17.500 0.8750 0 2 5.000 1 0.6 35 40 AACGTGTCCTTGCTTATTTT CCATTTAGTGTATTTGCAAA 11:3379107-3382196 Deletion 0 0 NA24385_cnt0 testbed 11 3380008 3380008 C T 42 4 0 1 3 1 C/T 0.0952 0;2 8.2 1 42.0 0 60.0 8.000 0.1000 0 0 3.000 1 1.2 4 40 ACGTGTCCTTGCTTATTTTT CCATTTAGTGTATTTGCAAA 11:3379107-3382196 SNV 0 0 NA24385_cnt0 testbed 11 3379995 3379995 C CGTGCTCTATTCCTTTCTCCTTCAAATCCTCCATTGTTTACTTAAATTGGATT 78 35 22 19 18 17 C/+52 0.4487 2;2 43.7 1 37.9 1 59.4 70.000 0.4730 0.4487 0 4.000 1 0.5 35 74 GTGTCATTTCTGAACGTGTC TTGCTTATTTTTCCCATTTA 11:3379107-3382196 Insertion 0 0 NA24385_cnt0 testbed 11 3379996 3379997 TT GTGCTCTATTCCTTTCTCCTTCAAATCCTCCATTGTTTACTTAAATTGGATTTG 78 2 22 19 2 0 CTT/+55 0.0256 2;0 73.0 1 41.5 1 60.0 4.000 0.0270 0.0256 0 0 0 1.5 2 74 TGTCATTTCTGAACGTGTCC GCTTATTTTTCCCATTTAGT 11:3379107-3382196 Complex 0 0 NA24385_cnt0 testbed 11 3382046 3382046 T A 73 3 36 34 1 2 T/A 0.0411 2;2 6.0 0 30.0 1 60.0 2.000 0.0282 0 0 1.000 1 1.0 2 71 CCAGATAAGAAGAAAAACAG CTGTTACGTTTACCCACTGC 11:3379107-3382196 SNV 0 0 -NA24385_cnt0 testbed 11 3380068 3380068 A AT 64 3 34 27 1 2 A/+1 0.0469 2;2 38.7 1 40.0 1 61.6 6.000 0.0517 0.0156 5 6.000 1 0.3 3 58 CTAGTGTTTTCTAAGCTATC TTTTTGAACAAATGTTATTC 11:3379107-3382196 Insertion 0 0 +NA24385_cnt0 testbed 11 3380068 3380068 A AT 64 3 34 27 1 2 A/+1 0.0469 2;2 37.7 1 39.0 1 60.0 6.000 0.0517 0.0156 5 6.000 1 0.3 3 58 CTAGTGTTTTCTAAGCTATC TTTTTGAACAAATGTTATTC 11:3379107-3382196 Insertion 0 0 NA24385_cnt0 testbed 11 3382121 3382122 CT C 75 3 40 32 3 0 T/-1 0.0400 2;0 47.0 0 40.3 1 60.0 6.000 0.0411 0 1 2.000 1 1.3 3 73 TTAAGAGTACACCCTCAGCT TGGCTTCTCCTTCAAAAGAG 11:3379107-3382196 Deletion 0 0 NA24385_cnt0 testbed 11 3380060 3380060 A T 63 2 34 26 1 1 A/T 0.0317 2;2 22.5 1 42.0 0 60.0 4.000 0.0357 0 0 2.000 1 1.5 2 56 TATGAACTCTAGTGTTTTCT AGCTATCATTTTTGAACAAA 11:3379107-3382196 SNV 0 0 NA24385_cnt0 testbed 11 3380339 3380339 A T 72 3 39 29 2 1 A/T 0.0417 2;2 5.7 1 25.0 1 60.0 2.000 0.0339 0.0278 1 7.000 1 3.0 2 59 GCCTATTTTTATATTTGTTT TTTTTTTCTCAAGTATGAAT 11:3379107-3382196 SNV 0 0 @@ -36,10 +36,10 @@ NA24385_cnt0 testbed 11 3380408 3380409 CT C 73 2 37 34 0 2 T/-1 0.0274 2;0 68.0 NA24385_cnt0 testbed 11 3380398 3380399 CT C 73 2 38 33 0 2 T/-1 0.0274 2;0 39.0 0 39.5 1 60.0 4.000 0.0286 0 2 3.000 1 0 2 70 GTGTGAGAACTGGGTGAAGG TTGCCACACTTTTCACACTT 11:3379107-3382196 Deletion 0 0 NA24385_cnt0 testbed 11 3380522 3380522 A ATGGGTTTTCTTATGTTTGGTAATGTCTGAGAACCACATGAAGACTCTGCCACATTCTTCACACTTGTAGGGTTTCTCTCCAGTATGAATTCTCTTATGTACAATAAGGTTGGAGGACTGGGTAAAGTTTTTTCCACATTCGTCACATTTGTAGGGCTTCTCTCCAGTATGGGTTTTCTTATGCTTAGTGAGGTCTGATAACTGCTTAAAGATGTTGCCACATTCTTCACACGTGTAGGGTTTTTCTTCAGAATGAGTTCTCTTATGGTTAGAAAGGCTTGAGCAAGTTCTGAAGACCTTCCCACATTCTTCACTTTGGTAGGGTTTCTCTCCGGTGTGAATCCTCCTGTGTTCAC 98 3 43 37 0 3 A/+355 0.0306 2;0 81.0 1 40.6 1 60.0 6.000 0.0385 0.0306 70 1.000 1 0 3 78 TTGTAGGGTTTCTCTCCAGT TGGGTTTTCTTATGTTTGGT 11:3379107-3382196 Insertion 0 3-1-1 NA24385_cnt0 testbed 11 3380510 3380510 T C 75 4 38 33 3 1 T/C 0.0533 2;2 35.5 1 34.2 1 58.2 3.000 0.0455 0 0 3.000 1 3.5 3 66 CATTCGTCACATTTGTAGGG TTCTCTCCAGTATGGGTTTT 11:3379107-3382196 SNV 0 0 -NA24385_cnt0 testbed 11 3380480 3380480 G GT 78 2 42 31 2 0 G/+1 0.0256 2;0 58.4 1 43.4 0 62.0 4.000 0.0290 0 6 7.000 1 1.0 2 69 AGGTTTGAGGACTGGGTAAA TTTTTTCCACATTCGTCACA 11:3379107-3382196 Insertion 0 0 +NA24385_cnt0 testbed 11 3380480 3380480 G GT 78 2 42 31 2 0 G/+1 0.0256 2;0 56.5 1 42.0 0 60.0 4.000 0.0290 0 6 7.000 1 1.0 2 69 AGGTTTGAGGACTGGGTAAA TTTTTTCCACATTCGTCACA 11:3379107-3382196 Insertion 0 0 NA24385_cnt0 testbed 11 3380486 3380570 TCCACATTCGTCACATTTGTAGGGTTTCTCTCCAGTATGGGTTTTCTTATGTTTGGTAATGTCTGAGAACCACATGAAGACTCTG T 80 2 47 33 1 1 C/-84 0.0250 2;2 34.5 1 36.4 1 35.5 4.000 0.0267 0.0250 8 6.000 1 5.0 2 75 GAGGACTGGGTAAAGTTTTT CCACATTCTTCACACTTGTA 11:3379107-3382196 Deletion 0 2-2-1 NA24385_cnt0 testbed 11 3380485 3380485 T TTCCACATTCGTCACATTTGTAGGGTTTCTCTCCAGTATGGGTTTTCTTATGTTTGGTAATGTCTGAGAACCACATGAAGACTCTGCCACATTCTTCACACTTGTAGGGTTTCTCTCCAGTATGAATTCTCTTATGTACAATAAGGTTGGAGGACTGGGTAAAGTTTTTTCCACATTCGTCACATTTGTAGGGCTTCTCTCCAGTATGGGTTTTCTTATGCTTAGTGAGGTCTGATAACTGCTTAAAGATGTTGCCACATTCTTCACACGTGTAGGGTTTTTCTTCAGAATGAGTTCTCTTATGGTTAGAAAGGCTTGAGCAAGTTCTGAAGACCTTCCCACATTCTTCACATTGGTAGGGTTTCTCTCCGGTGTGAATCCTCCTGTGTTCACTGAGGTGTGAGGACTGTGTATAGGCTTTCCCACATTCGTCACATTTGTATGGTTTCTCACCAGTGTGAATTCTCTTATGTTTAGTAAGGTCTGAGAACCACTTGAAGATGCTGTCACATTCCTCACATTTGAAAGGTTTCCCTCCAATCTCATTTCTCTGGTGTTTGGAAGGATTTGGGCTGTGGTTAAAACCTTTGTACCATGTTTCACATTTGGAGAGCTTCTCTCCAGCAAGAATCATCTGTTGATTAGAAAGGCTTGAGCAAGAGATAAAGACACTGCTGCACTCTTCATATTTGCAGGGTTTTTCCTCAGTACCATGCTCATGTTCAGTAAGGTGGGAGCACTGGTTAAATACTTTGCCAAATTCTTCACATCTGTAATGTTCCCCTCCGGCATAAATTCTATTTTTAGTAAGGACTGAGCAAGTTTTAATGACGTTGTTACATTCTTGACACTTGTAAGGTTTC 82 2 44 33 2 0 T/+862 0.0244 2;0 21.0 1 40.7 1 60.0 4.000 0.0270 0.0244 70 6.000 1 0 2 74 TGAGGACTGGGTAAAGTTTT TCCACATTCGTCACATTTGT 11:3379107-3382196 Insertion 0 2-3-1 -NA24385_cnt0 testbed 11 3380606 3380606 A ATGAATTCTCTTATTGTACATAAGAGAATTCATACTGGAGAGAAACCCTACAAGTG 85 2 41 36 1 1 A/+55 0.0235 2;2 31.9 1 44.4 1 33.5 4.000 0.0274 0.0235 13 2.000 2 2.2 2 73 TTGTAGGGTTTCTCTCCAGT TGAATTCTCTTATGTACAAT 11:3379107-3382196 Insertion 0 0 +NA24385_cnt0 testbed 11 3380606 3380606 A ATGAATTCTCTTATTGTACATAAGAGAATTCATACTGGAGAGAAACCCTACAAGTG 85 2 41 36 1 1 A/+55 0.0235 2;2 29.5 1 41.1 1 31.0 4.000 0.0274 0.0235 13 2.000 2 2.2 2 73 TTGTAGGGTTTCTCTCCAGT TGAATTCTCTTATGTACAAT 11:3379107-3382196 Insertion 0 0 NA24385_cnt0 testbed 11 3380604 3380624 GTATGAATTCTCTTATGTACA ACCTTATTGTAC 88 6 44 38 4 2 G/-21iACCTTATTGTAC 0.0682 2;2 15.0 1 40.8 1 60.0 12.000 0.0706 0.0682 0 2.000 1 0.5 6 85 ACTTGTAGGGTTTCTCTCCA ATAAGGTTGGAGGACTGGGT 11:3379107-3382196 Complex 0 0 NA24385_cnt0 testbed 11 3380579 3380579 T G 89 2 49 37 1 1 T/G 0.0225 2;2 9.0 0 37.0 1 35.5 4.000 0.0241 0 0 2.000 1 5.0 2 83 ATGAAGACTCTGCCACATTC TCACACTTGTAGGGTTTCTC 11:3379107-3382196 SNV 0 0 NA24385_cnt0 testbed 11 3380583 3380740 CACTTGTAGGGTTTCTCTCCAGTATGAATTCTCTTATGTACAATAAGGTTGGAGGACTGGGTAAAGTTTTTTCCACATTCGTCACATTTGTAGGGCTTCTCTCCAGTATGGGTTTTCTTATGCTTAGTGAGGTCTGATAACTGCTTAAAGATGTTGCC TACTGGAGAGAAACCCTACAAGTGTGAAGAATGTGGCA 93 4 54 35 2 2 C/-158iTACTGGAGAGAAACCCTACAAGTGTGAAGAATGTGGCA 0.0430 2;2 24.5 1 40.5 1 60.0 8.000 0.0471 0.0430 0 2.000 1 0.2 4 85 AGACTCTGCCACATTCTTCA ACATTCTTCACACGTGTAGG 11:3379107-3382196 Complex 0 0 diff --git a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24631_sorted.chr1.1000k.bam;chr1;1;499702;-f0.001.txt b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24631_sorted.chr1.1000k.bam;chr1;1;499702;-f0.001.txt index 8bac81e..0b969a2 100644 --- a/testdata/integrationtestcases/Simple;GRCh37.fa;NA24631_sorted.chr1.1000k.bam;chr1;1;499702;-f0.001.txt +++ b/testdata/integrationtestcases/Simple;GRCh37.fa;NA24631_sorted.chr1.1000k.bam;chr1;1;499702;-f0.001.txt @@ -34,7 +34,7 @@ NA24631 testbed 1 16830 16830 C G 181 11 57 112 1 10 C/G 0.0608 2;2 66.6 1 37.2 NA24631 testbed 1 16856 16856 A G 201 24 58 119 6 18 A/G 0.1194 2;2 49.6 1 36.0 1 13.4 11.000 0.1236 0.0050 1 2.000 1 4.6 22 178 TCCCAGAACCCAGCTCACCT CCTTGAGAGGCTCGGCTACC 1:2-499702 SNV 0 0 NA24631 testbed 1 66008 66008 C G 231 40 96 95 27 13 C/G 0.1732 2;2 56.1 1 37.1 1 28.0 80.000 0.1802 0 0 1.000 1 2.3 40 222 TAGAGTTGTGAGGATTTTTA AGCTTTTGAAAGAATAAACT 1:2-499702 SNV 0 0 NA24631 testbed 1 16864 16864 A T 204 6 65 129 1 5 A/T 0.0294 2;2 69.8 1 33.3 1 13.7 5.000 0.0284 0 0 2.000 1 7.2 5 176 CCCAGCTCACCTACCTTGAG GGCTCGGCTACCTCAGTGTG 1:2-499702 SNV 0 0 -NA24631 testbed 1 328168 328168 C CCGGCCT 69 3 32 30 0 3 C/+6 0.0435 2;0 44.3 1 39.6 1 0 6.000 0.0508 0 19 4.000 6 2.1 3 59 TCTCGAAGGCCTGCACGGGC CGGCCTCGGCCTCGGCCTCA 1:2-499702 Insertion 0 0 +NA24631 testbed 1 328168 328168 C CCGGCCT 69 3 32 30 0 3 C/+6 0.0435 2;0 41.3 1 36.9 1 0 6.000 0.0508 0 19 4.000 6 2.1 3 59 TCTCGAAGGCCTGCACGGGC CGGCCTCGGCCTCGGCCTCA 1:2-499702 Insertion 0 0 NA24631 testbed 1 328188 328188 A C 65 2 29 34 2 0 A/C 0.0308 2;0 13.5 1 23.0 0 0 4.000 0.0377 0 0 1.000 1 2.5 2 53 CCGGCCTCGGCCTCGGCCTC CAGCAGACTCTCCACGCCCA 1:2-499702 SNV 0 0 NA24631 testbed 1 16900 16900 T C 223 10 69 142 4 6 T/C 0.0448 2;2 54.7 1 36.8 1 16.7 20.000 0.0508 0 1 2.000 1 6.6 10 197 GTGTGGAAGGTGGGCAGTTC GGAATGGTGCCAGGGGCAGA 1:2-499702 SNV 0 0 NA24631 testbed 1 328193 328193 A G 65 18 29 17 2 16 A/G 0.2769 2;2 77.4 1 36.3 1 0 17.000 0.3542 0.0154 0 2.000 3 3.1 17 48 CTCGGCCTCGGCCTCACAGC GACTCTCCACGCCCAGCTAG 1:2-499702 SNV 0 0 @@ -79,7 +79,7 @@ NA24631 testbed 1 328539 328539 G A 35 4 1 30 0 4 G/A 0.1143 1;0 86.2 1 39.2 1 0 NA24631 testbed 1 66400 66405 TATATA T 87 2 0 85 0 2 A/-5 0.0230 1;0 102.0 1 39.5 1 28.5 4.000 0.0241 0 10 3.000 2 5.5 2 83 TTATATAATATAATATATAT ATATAATATATTTTATTATA 1:2-499702 Deletion 0 0 NA24631 testbed 1 33656 33656 T C 2 2 0 0 2 0 C/C 1.0000 0;0 67.0 1 38.0 1 0 4.000 1.0000 0 0 2.000 3 5.5 2 2 CATTTACATTAGGTATTTCT CTAATGCTATCCCTCCCCCA 1:2-499702 SNV 0 0 NA24631 testbed 1 328569 328569 A G 33 3 1 29 0 3 A/G 0.0909 1;0 98.7 1 40.0 0 0 6.000 0.0938 0 0 2.000 2 4.0 3 32 ACTTTTTGGCACAATGAAAA TATCGCCCACGATCAACGTG 1:2-499702 SNV 0 0 -NA24631 testbed 1 66442 66442 T TATATA 68 8 0 57 0 8 T/+5 0.1176 1;0 87.3 1 38.6 1 24.2 16.000 0.1270 0 10 3.000 2 6.2 8 63 TATATAAATATATATTATAT ATATAATATATATTTTATTA 1:2-499702 Insertion 0 0 +NA24631 testbed 1 66442 66442 T TATATA 68 8 0 57 0 8 T/+5 0.1176 1;0 84.2 1 37.2 1 23.4 16.000 0.1270 0 10 3.000 2 6.2 8 63 TATATAAATATATATTATAT ATATAATATATATTTTATTA 1:2-499702 Insertion 0 0 NA24631 testbed 1 328584 328584 A G 32 3 1 28 0 3 A/G 0.0938 1;0 59.0 1 39.3 1 0 6.000 0.0968 0 0 2.000 1 2.0 3 31 GAAAAATATCGCCCACGATC ACGTGTTCTGTTCTGGGGAA 1:2-499702 SNV 0 0 NA24631 testbed 1 66457 66457 T A 66 6 0 60 0 6 T/A 0.0909 1;0 71.7 1 37.5 1 21.7 12.000 0.0952 0 1 4.000 1 6.2 6 63 TATATTATATAATATATATT TATTATATAATATATATTAT 1:2-499702 SNV 0 0 NA24631 testbed 1 66461 66461 T A 64 6 0 58 0 6 T/A 0.0938 1;0 67.7 1 39.0 1 21.7 12.000 0.0968 0 0 3.000 2 6.2 6 62 TTATATAATATATATTTTAT ATATAATATATATTATATAT 1:2-499702 SNV 0 0 @@ -215,7 +215,7 @@ NA24631 testbed 1 21093 21093 C A 40 20 0 20 0 20 C/A 0.5000 1;1 65.3 1 38.4 1 0 NA24631 testbed 1 135804 135804 G A 118 15 41 61 9 6 G/A 0.1271 2;2 69.1 1 36.1 1 15.1 14.000 0.1250 0 0 3.000 1 2.3 14 112 TCCGGCCTGGAGATGCAGCC GGAGGAAGAGCTGGGCCCGG 1:2-499702 SNV 0 0 NA24631 testbed 1 21121 21121 G A 37 18 0 19 0 18 G/A 0.4865 1;1 68.0 1 36.5 1 0 17.000 0.4722 0.0270 0 5.000 1 5.5 17 36 AAGCTGGTCACATCCCCACC AAAAAGCCCATGGACAACGA 1:2-499702 SNV 0 0 NA24631 testbed 1 70300 70300 C T 89 12 6 71 3 9 C/T 0.1348 2;2 54.8 1 31.2 1 17.6 2.000 0.1013 0.0225 0 3.000 1 2.3 8 79 ACCTGTTCCTTCCTGTGTGA CCTAAGTTTAGTAGAAGAAA 1:2-499702 SNV 0 0 -NA24631 testbed 1 348852 348852 A AT 3 3 0 0 1 2 +1/+1 1.0000 0;2 36.3 1 31.5 1 0 2.000 1.0000 0 8 9.000 1 0.3 2 2 GATTTATTTGTCCAGAGAGG TTTTTTTTCCTACCTAGCAT 1:2-499702 Insertion 0 0 +NA24631 testbed 1 348852 348852 A AT 3 3 0 0 1 2 +1/+1 1.0000 0;2 35.3 1 30.7 1 0 2.000 1.0000 0 8 9.000 1 0.3 2 2 GATTTATTTGTCCAGAGAGG TTTTTTTTCCTACCTAGCAT 1:2-499702 Insertion 0 0 NA24631 testbed 1 135982 135982 A G 98 95 0 3 65 30 A/G 0.9694 0;2 63.7 1 36.8 1 21.6 22.750 0.9681 0.0510 0 3.000 1 2.6 91 94 CGCCTGCGTTTGTAGACCCC AAGTTTCTGCAACCAAGCTC 1:2-499702 SNV 0 0 NA24631 testbed 1 136017 136017 C T 126 2 82 42 2 0 C/T 0.0159 2;0 27.0 1 37.5 1 25.0 4.000 0.0164 0 4 3.000 1 6.0 2 122 AAGCTCTTCAGACCCACATC CTTCTCCCAGTGACTGAACA 1:2-499702 SNV 0 0 NA24631 testbed 1 21335 21335 T C 17 8 0 9 0 8 T/C 0.4706 0;0 75.6 1 37.2 1 0 16.000 0.5000 0 0 1.000 1 4.4 8 16 GCTTGCAAGTCCCCTGTCTG AGCCTCACCCCTGTCGTATC 1:2-499702 SNV 0 0 @@ -248,7 +248,7 @@ NA24631 testbed 1 136839 136840 AG A 33 3 21 9 2 1 G/-1 0.0909 2;2 43.0 1 34.7 1 NA24631 testbed 1 120458 120458 T C 62 61 0 0 61 0 C/C 0.9839 0;1 63.1 1 38.1 1 24.0 19.333 0.9831 0.0323 1 1.000 1 1.9 58 59 TTAATATGCAGTTCATACTG CAGAATTGCAGGCAATTTAT 1:2-499702 SNV 0 0 NA24631 testbed 1 136848 136848 G C 26 2 16 7 1 1 G/C 0.0769 2;2 38.0 1 27.0 0 18.5 4.000 0.1176 0 0 3.000 1 4.0 2 17 GGTGTGAGGCAAGGGGCTCG GCTGACCTCTCTCAGCGTGG 1:2-499702 SNV 0 0 NA24631 testbed 1 136864 136864 C T 33 5 20 8 5 0 C/T 0.1515 2;0 12.8 1 35.0 1 35.4 10.000 0.1923 0.0303 0 1.000 1 5.8 5 26 CTCGGGCTGACCTCTCTCAG GTGGGAGGGGCCGGTGTGAG 1:2-499702 SNV 0 0 -NA24631 testbed 1 120507 120507 A AT 84 5 72 5 5 0 A/+1 0.0595 2;0 64.0 1 39.8 1 20.9 10.000 0.0633 0 10 11.000 1 2.5 5 79 CCTAATCCTCCAAAATCGCT TTTTTTTTTTGACACACACT 1:2-499702 Insertion 0 0 +NA24631 testbed 1 120507 120507 A AT 84 5 72 5 5 0 A/+1 0.0595 2;0 61.8 1 38.4 1 20.2 10.000 0.0633 0 10 11.000 1 2.5 5 79 CCTAATCCTCCAAAATCGCT TTTTTTTTTTGACACACACT 1:2-499702 Insertion 0 0 NA24631 testbed 1 136896 136897 GG AC 33 5 15 10 5 0 GG/AC 0.1515 2;0 32.0 1 37.7 1 23.8 10.000 0.3333 0 0 3.000 1 3.8 5 15 CGGTGTGAGGCAAGGGGCTC GCTGACCTCTGTCCGCGTGG 1:2-499702 Complex 0 0 NA24631 testbed 1 136925 136925 C T 43 2 29 12 2 0 C/T 0.0465 2;0 8.5 1 32.5 1 12.0 4.000 0.0588 0 0 2.000 1 3.0 2 34 TCTGTCCGCGTGGGAGGGGC GGTGTGAGGCAAGGGGCTCG 1:2-499702 SNV 0 0 NA24631 testbed 1 136934 136934 G A 45 11 27 7 7 4 G/A 0.2444 2;2 23.0 1 31.1 1 12.7 2.667 0.2500 0.0444 0 1.000 1 3.7 8 32 GTGGGAGGGGCCGGTGTGAG CAAGGGGCTCGGGCTGACCT 1:2-499702 SNV 0 0 @@ -298,7 +298,7 @@ NA24631 testbed 1 368047 368047 T G 42 5 20 17 0 5 T/G 0.1190 2;0 76.6 1 38.8 1 NA24631 testbed 1 237057 237057 G A 8 2 6 0 2 0 G/A 0.2500 0;0 107.0 1 38.0 1 18.0 4.000 0.2500 0 1 1.000 1 2.5 2 8 TAATGTTGTGTTCCCACCTC AGGCAGCTTTGTAAGCTTCT 1:2-499702 SNV 0 0 NA24631 testbed 1 368157 368157 G C 47 4 25 18 0 4 G/C 0.0851 2;0 57.8 1 34.8 1 0 8.000 0.0909 0 2 2.000 1 3.8 4 44 TGGCATTTCTTGTTAATTTA CCTTCTGTGGCCCTAATGTG 1:2-499702 SNV 0 0 NA24631 testbed 1 24220 24220 T G 22 3 16 2 2 1 T/G 0.1364 2;2 42.3 1 30.0 1 0 2.000 0.1111 0 0 2.000 2 3.3 2 18 AATGCACTCAAATCAATGGT GTGCACGGTTTATATGAATA 1:2-499702 SNV 0 0 -NA24631 testbed 1 24230 24230 T TTATAC 26 2 20 4 2 0 T/+5 0.0769 2;0 19.2 1 40.5 0 0 4.000 0.0870 0 4 3.000 1 6.1 2 23 AATCAATGGTTGTGCACGGT TATATGAATATTAGTGATTA 1:2-499702 Insertion 0 0 +NA24631 testbed 1 24230 24230 T TTATAC 26 2 20 4 2 0 T/+5 0.0769 2;0 19.0 1 40.0 0 0 4.000 0.0870 0 4 3.000 1 6.1 2 23 AATCAATGGTTGTGCACGGT TATATGAATATTAGTGATTA 1:2-499702 Insertion 0 0 NA24631 testbed 1 138980 138980 G T 166 2 82 82 2 0 G/T 0.0120 2;0 82.0 1 34.5 1 22.5 4.000 0.0128 0 0 2.000 1 3.5 2 156 TGGGCCTTCATAGGCCACCA GAGGCAGCAGTTGGGACTAG 1:2-499702 SNV 0 0 NA24631 testbed 1 24302 24308 CTATTGC GTACTGG 39 8 18 6 7 1 CTATTGC/GTACTGG 0.2051 2;2 67.2 1 38.6 1 0 16.000 0.2051 0 0 1.000 1 6.5 8 39 GTTATTGAAGAACTAATCAT TTATTTAGGTCTTTCTCTCC 1:2-499702 Complex 0 0 NA24631 testbed 1 24302 24302 C G 39 7 18 6 7 0 C/G 0.1795 2;0 44.4 1 38.9 1 0 14.000 0.1795 0.0256 0 1.000 1 5.9 7 39 GTTATTGAAGAACTAATCAT TATTGCTTATTTAGGTCTTT 1:2-499702 SNV 0 0 @@ -315,7 +315,7 @@ NA24631 testbed 1 24487 24487 T C 73 34 26 13 30 4 T/C 0.4658 2;2 54.6 1 37.1 1 NA24631 testbed 1 139213 139213 A G 187 42 72 72 21 21 A/G 0.2246 2;2 62.1 1 35.8 1 40.1 9.500 0.2303 0.0107 0 1.000 1 3.2 38 165 TGGAAAGGCCCTTGTGAAGC TGAGCTTGGCCTAAAGAGGC 1:2-499702 SNV 0 0 NA24631 testbed 1 24534 24534 G A 73 25 28 19 22 3 G/A 0.3425 2;2 41.8 1 36.5 1 6.7 24.000 0.3582 0 0 4.000 1 4.0 24 67 GAAACCAGGAGGCTAAGTGG GTGGAAGGGAGTGAGCTCTC 1:2-499702 SNV 0 0 NA24631 testbed 1 24536 24536 T C 74 7 48 18 2 5 T/C 0.0946 2;2 71.7 1 38.0 1 0 14.000 0.1094 0.0135 0 2.000 1 3.9 7 64 AACCAGGAGGCTAAGTGGGG GGAAGGGAGTGAGCTCTCGG 1:2-499702 SNV 0 0 -NA24631 testbed 1 237528 237528 C CAAAA 22 10 5 0 7 3 C/+4 0.4545 0;2 77.8 1 40.1 1 19.6 20.000 0.5263 0 16 20.000 1 4.9 10 19 GAGAGAGAGCGAGACTTTCT AAAAAAAAAAAAAAAACTTA 1:2-499702 Insertion 0 0 +NA24631 testbed 1 237528 237528 C CAAAA 22 10 5 0 7 3 C/+4 0.4545 0;2 73.4 1 37.9 1 18.5 20.000 0.5263 0 16 20.000 1 4.9 10 19 GAGAGAGAGCGAGACTTTCT AAAAAAAAAAAAAAAACTTA 1:2-499702 Insertion 0 0 NA24631 testbed 1 139233 139233 C A 190 41 77 71 21 20 C/A 0.2158 2;2 62.9 1 34.0 1 40.1 5.833 0.2096 0.0053 0 2.000 1 3.1 35 167 ATGAGCTTGGCCTAAAGAGG CACTGGGTGGCAGGAGCTGG 1:2-499702 SNV 0 0 NA24631 testbed 1 24639 24639 G A 77 11 37 29 3 8 G/A 0.1429 2;2 71.8 1 36.7 1 0 10.000 0.1351 0 0 3.000 1 3.0 10 74 CAGATGGGTTCCCCAGGACC GGATTCCCCAAGGGGGCTGC 1:2-499702 SNV 0 0 NA24631 testbed 1 24723 24723 A G 77 4 32 41 4 0 A/G 0.0519 2;0 73.5 1 35.8 1 0 8.000 0.0588 0 0 1.000 1 3.2 4 68 CCTCTCATCAGGTGGGGGTG GTGGCAGCACCCACCTGCTG 1:2-499702 SNV 0 0 @@ -403,7 +403,7 @@ NA24631 testbed 1 29443 29443 A G 53 51 0 0 26 25 G/G 0.9623 0;2 68.1 1 34.3 1 1 NA24631 testbed 1 13079 13079 C G 41 3 38 0 3 0 C/G 0.0732 1;0 37.7 1 36.3 1 27.3 6.000 0.0789 0.0244 1 1.000 1 3.3 3 38 CTGGCTGCCTCCAGCTGGGT GACAGACAGGGGCTGGAGAA 1:2-499702 SNV 0 0 NA24631 testbed 1 13116 13118 TGA GGG 42 20 18 1 20 0 TGA/GGG 0.4762 1;1 60.2 1 35.1 1 28.2 19.000 0.4634 0.0952 0 1.000 1 3.4 19 41 AGAAGGGGAGAAGAGGAAAG GGTTGCCTGCCCTGTCTCCT 1:2-499702 Complex 0 0 NA24631 testbed 1 13116 13116 T G 42 3 18 1 3 0 T/G 0.0714 1;0 52.3 1 32.7 1 25.7 6.000 0.0732 0 0 1.000 1 4.7 3 41 AGAAGGGGAGAAGAGGAAAG GAGGTTGCCTGCCCTGTCTC 1:2-499702 SNV 0 0 -NA24631 testbed 1 62297 62297 T TCTTC 13 5 8 0 5 0 T/+4 0.3846 0;0 32.2 1 35.2 1 14.8 10.000 0.3846 0.2308 4 2.000 1 1.8 5 13 CGTATAGCTTACATTTTAAT CTTCATTTCATTTGTTCATT 1:2-499702 Insertion 0 0 +NA24631 testbed 1 62297 62297 T TCTTC 13 5 8 0 5 0 T/+4 0.3846 0;0 31.8 1 34.8 1 14.6 10.000 0.3846 0.2308 4 2.000 1 1.8 5 13 CGTATAGCTTACATTTTAAT CTTCATTTCATTTGTTCATT 1:2-499702 Insertion 0 0 NA24631 testbed 1 258930 258930 C T 35 35 0 0 16 19 T/T 1.0000 0;2 68.5 1 38.3 1 18.8 34.000 1.0000 0.0286 0 1.000 1 1.8 34 34 AATGGATATTGTCTCATTTT AGAACAGAGTACTAAATGGA 1:2-499702 SNV 0 0 NA24631 testbed 1 13178 13178 G A 38 6 30 2 6 0 G/A 0.1579 2;0 56.8 1 38.7 1 5.7 12.000 0.1622 0 0 1.000 1 4.2 6 37 GAAGGGGATGCACTGTTGGG AGGCAGCTGTAACTCAAAGC 1:2-499702 SNV 0 0 NA24631 testbed 1 29571 29571 G C 35 13 4 18 0 13 G/C 0.3714 2;1 70.6 1 36.2 1 14.9 26.000 0.3714 0 0 1.000 1 2.2 13 35 GACGTGCACACGGCTCCCAT CGTTGTCTTCCGAGCGTCAG 1:2-499702 SNV 0 0 @@ -546,13 +546,13 @@ NA24631 testbed 1 14930 14930 A G 169 38 45 51 21 17 A/G 0.2249 2;2 50.2 1 33.2 NA24631 testbed 1 14930 14933 AAGG GAGA 169 34 45 51 22 12 AAGG/GAGA 0.2012 2;2 54.0 1 33.6 1 38.3 7.500 0.1987 0.0592 0 2.000 1 5.2 30 151 AAAAGGCAGGACAGAATTAC TGCTGGCCCAGGGCGGGCAG 1:2-499702 Complex 0 0 NA24631 testbed 1 14932 14932 G T 158 53 45 35 20 33 G/T 0.3354 2;2 55.2 1 33.6 1 25.0 5.625 0.3846 0.0253 0 2.000 1 2.5 45 117 AAGGCAGGACAGAATTACAA GTGCTGGCCCAGGGCGGGCA 1:2-499702 SNV 0 0 NA24631 testbed 1 113265 113265 C T 81 6 0 75 0 6 C/T 0.0741 1;0 86.2 1 35.3 1 23.2 5.000 0.0649 0 0 3.000 1 1.8 5 77 TTTGACCTTATACATTTGTG TTTAGTATAACAAAATGATA 1:2-499702 SNV 0 0 -NA24631 testbed 1 227952 227952 G GA 55 5 41 8 0 5 G/+1 0.0909 2;0 17.6 1 33.4 1 13.7 4.000 0.0769 0.0545 7 8.000 1 1.8 4 52 CTCTATTCTAACTTGGCTTG AAAAAAATAAGCATTTATAA 1:2-499702 Insertion 0 0 +NA24631 testbed 1 227952 227952 G GA 55 5 41 8 0 5 G/+1 0.0909 2;0 17.2 1 32.6 1 13.4 4.000 0.0769 0.0545 7 8.000 1 1.8 4 52 CTCTATTCTAACTTGGCTTG AAAAAAATAAGCATTTATAA 1:2-499702 Insertion 0 0 NA24631 testbed 1 342653 342653 C G 12 2 3 7 0 2 C/G 0.1667 2;0 80.5 1 37.0 1 0 4.000 0.1667 0 2 4.000 1 1.0 2 12 TTGCTCGCCAACAAGGAAAA TTTTAAGTAGAGCAGAACCT 1:2-499702 SNV 0 0 NA24631 testbed 1 14976 14976 G A 156 35 60 60 20 15 G/A 0.2244 2;2 63.5 1 34.4 1 34.5 7.750 0.2109 0.0128 0 2.000 1 5.0 31 147 GCCCTGCCTCCTACCCTTGC CCTCATGACCAGCTTGTTGA 1:2-499702 SNV 0 0 NA24631 testbed 1 129675 129676 GA G 20 2 1 16 0 2 A/-1 0.1000 1;0 33.5 1 30.0 1 31.5 4.000 0.1176 0 0 1.000 1 2.0 2 17 TCCCGCTTTGGCCTCCCAAA CTTTTTTTTTTTTTTTAATA 1:2-499702 Deletion 0 0 NA24631 testbed 1 129677 129678 CT C 20 15 1 0 0 15 T/-1 0.7500 0;1 58.0 1 34.5 1 18.7 6.500 0.8667 0 14 15.000 1 3.3 13 15 CCGCTTTGGCCTCCCAAAGA TTTTTTTTTTTTTTAATATA 1:2-499702 Deletion 0 0 NA24631 testbed 1 15015 15015 G C 157 10 91 56 0 10 G/C 0.0637 2;0 60.5 1 34.3 1 18.9 9.000 0.0612 0.0064 3 3.000 1 4.3 9 147 GAAGAGATCCGACATCAAGT CCCACCTTGGCTCGTGGCTC 1:2-499702 SNV 0 0 -NA24631 testbed 1 260785 260785 G GA 5 5 0 0 4 1 +1/+1 1.0000 0;2 36.8 1 37.2 1 0 10.000 1.0000 0.2000 8 9.000 1 1.9 5 5 CAGTCCAAAATGCTAGGTAG AAAAAAAATCCTCTCTGGAC 1:2-499702 Insertion 0 0 +NA24631 testbed 1 260785 260785 G GA 5 5 0 0 4 1 +1/+1 1.0000 0;2 35.8 1 36.2 1 0 10.000 1.0000 0.2000 8 9.000 1 1.9 5 5 CAGTCCAAAATGCTAGGTAG AAAAAAAATCCTCTCTGGAC 1:2-499702 Insertion 0 0 NA24631 testbed 1 15045 15045 C T 162 10 92 60 0 10 C/T 0.0617 2;0 78.2 1 38.1 1 18.9 20.000 0.0641 0 1 3.000 1 4.3 10 156 GCTCGTGGCTCTCACTGCAA GGGAAAGCCACAGACTGGGG 1:2-499702 SNV 0 0 NA24631 testbed 1 260836 260836 C T 6 2 2 2 1 1 C/T 0.3333 2;2 63.5 1 33.0 1 0 4.000 0.3333 0 0 1.000 1 4.5 2 6 TCAAAGCAAGCTCATAAGAG AGGTTTCAAAGGTCATGAGC 1:2-499702 SNV 0 0 NA24631 testbed 1 15094 15094 A G 164 8 94 59 0 8 A/G 0.0488 2;0 94.6 1 38.6 1 17.9 16.000 0.0571 0 0 1.000 1 4.1 8 140 TCAGTCACATGCGACCGGTG CTCCCTGTCCCCACCCCCAT 1:2-499702 SNV 0 0 @@ -566,7 +566,7 @@ NA24631 testbed 1 15211 15211 T G 131 73 26 31 40 33 T/G 0.5573 2;2 74.9 1 37.6 NA24631 testbed 1 326504 326504 G A 57 8 17 32 1 7 G/A 0.1404 2;2 40.6 1 34.9 1 0 16.000 0.1538 0.0175 0 3.000 1 3.8 8 52 GCCCAAGTTGTCCTGAAGTC GGCTCTCCCGGCCCTGCCTC 1:2-499702 SNV 0 0 NA24631 testbed 1 326513 326513 C T 54 2 15 37 1 1 C/T 0.0370 2;2 77.0 0 39.5 1 0 4.000 0.0385 0 1 2.000 1 1.0 2 52 GTCCTGAAGTCGGGCTCTCC GGCCCTGCCTCCCAGCAAGT 1:2-499702 SNV 0 0 NA24631 testbed 1 326526 326526 C G 49 8 13 28 1 7 C/G 0.1633 2;2 46.4 1 35.4 1 0 16.000 0.1633 0.0204 0 1.000 1 3.6 8 49 GCTCTCCCGGCCCTGCCTCC AGCAAGTAAGCAAGCTCTTT 1:2-499702 SNV 0 0 -NA24631 testbed 1 15240 15240 G GGGGCCA 133 5 66 55 0 5 G/+6 0.0376 2;0 52.2 1 35.4 1 26.4 10.000 0.0439 0.0075 15 4.000 1 2.5 5 114 AGCCACCTCCCAGCCACCTC GGGCCAGGGCCAGGGTGTGC 1:2-499702 Insertion 0 0 +NA24631 testbed 1 15240 15240 G GGGGCCA 133 5 66 55 0 5 G/+6 0.0376 2;0 49.4 1 33.5 1 25.0 10.000 0.0439 0.0075 15 4.000 1 2.5 5 114 AGCCACCTCCCAGCCACCTC GGGCCAGGGCCAGGGTGTGC 1:2-499702 Insertion 0 0 NA24631 testbed 1 326572 326572 A G 46 12 9 23 1 11 A/G 0.2609 2;2 68.9 1 34.9 1 0 11.000 0.3235 0 0 2.000 1 2.7 11 34 CAACTCCTGCCCAGCTCCCA CCGCCTTTGTAGGCCCCGAA 1:2-499702 SNV 0 0 NA24631 testbed 1 261034 261034 T C 2 2 0 0 0 2 C/C 1.0000 0;0 13.5 1 37.5 1 0 4.000 1.0000 0.5000 0 2.000 1 2.5 2 2 ATGAGTAAAGACCAAGAAAA TGTGCTGGATGGCCACTTCC 1:2-499702 SNV 0 0 NA24631 testbed 1 15274 15274 A T 113 65 0 0 32 33 T/T 0.5752 0;2 73.9 1 36.0 1 36.3 20.667 0.5636 0 0 2.000 1 3.4 62 110 GGTGTGCAGCACCACTGTAC ATGGGGAAACTGGCCCAGAG 1:2-499702 SNV 0 0 diff --git a/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr10.CandDel5.bam;chr10;134535815-134569759;-f 0.001;.txt b/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr10.CandDel5.bam;chr10;134535815-134569759;-f 0.001;.txt index eaa0a93..7a2c5b4 100644 --- a/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr10.CandDel5.bam;chr10;134535815-134569759;-f 0.001;.txt +++ b/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr10.CandDel5.bam;chr10;134535815-134569759;-f 0.001;.txt @@ -39,7 +39,7 @@ Colo829.chr10.CandDel5 testbed chr10 134548685 134548685 A G 6 6 0 0 3 3 G/G 1.0 Colo829.chr10.CandDel5 testbed chr10 134556903 134556903 A G 6 5 0 1 2 3 A/G 0.8333 0;2 25.6 1 37.4 1 43.4 10.000 0.8333 0 0 2.000 1 3.8 5 6 ACTCAGCCCCAGCAGGGACC GGCCCGGGAGTGAGGGCGAG chr10:134535816-134569759 SNV 0 0 Colo829.chr10.CandDel5 testbed chr10 134565170 134565170 G A 15 11 2 2 5 6 G/A 0.7333 2;2 45.6 1 29.4 1 58.8 1.750 0.8750 0 0 1.000 1 3.3 7 8 GGTGCCCAGGAGGTGTCTTC TGGAGGCGAGTGCCCAGGAG chr10:134535816-134569759 SNV 0 0 Colo829.chr10.CandDel5 testbed chr10 134556992 134556992 C T 5 3 1 0 1 2 C/T 0.6000 0;2 21.7 1 31.3 1 52.3 2.000 1.0000 0 1 2.000 2 2.7 2 2 GTGAGGGCGAGCCCCTTGCG GAACCCTGGAGGGCCGGACC chr10:134535816-134569759 SNV 0 0 -Colo829.chr10.CandDel5 testbed chr10 134559066 134559066 C CTGGCACTGGCCCCAGCCCGGGCCTCGGG 18 19 1 1 9 9 C/+28 1.0000 2;2 33.5 1 35.6 1 60.3 38.000 1.0000 0.7895 30 3.000 1 0.5 19 19 TCATGTGAGGCATGTCACGG TGGCACTGGCCCCAGCCCGG chr10:134535816-134569759 Insertion 0 0 +Colo829.chr10.CandDel5 testbed chr10 134559066 134559066 C CTGGCACTGGCCCCAGCCCGGGCCTCGGG 18 19 1 1 9 9 C/+28 1.0000 2;2 29.1 1 30.9 1 52.4 38.000 1.0000 0.7895 30 3.000 1 0.5 19 19 TCATGTGAGGCATGTCACGG TGGCACTGGCCCCAGCCCGG chr10:134535816-134569759 Insertion 0 0 Colo829.chr10.CandDel5 testbed chr10 134569316 134569316 G A 11 11 0 0 5 6 A/A 1.0000 0;2 37.7 1 33.8 1 60.0 4.500 1.0000 0 0 1.000 1 2.1 9 9 AGAGGAGGCTCCAGGGGCCT ACACGGCTCTGCAGGTCTCT chr10:134535816-134569759 SNV 0 0 Colo829.chr10.CandDel5 testbed chr10 134550882 134550882 T C 12 12 0 0 6 6 C/C 1.0000 0;2 39.8 1 38.3 1 60.0 24.000 1.0000 0 0 2.000 3 1.3 12 12 ACACAGCCCCATCCTCCTGC GCCGTGGGTTAATGTTAGCG chr10:134535816-134569759 SNV 0 0 Colo829.chr10.CandDel5 testbed chr10 134557068 134557068 A G 4 4 0 0 2 2 G/G 1.0000 0;2 30.2 1 36.8 1 60.0 8.000 1.0000 0.2500 0 1.000 1 3.2 4 4 ATTCATTCATTTGTCCCGTG GTATCAATTGGATGTCTGCA chr10:134535816-134569759 SNV 0 0 diff --git a/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr10.LGINS30.bam;chr10;127800917-127802207;-f 0.001;.txt b/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr10.LGINS30.bam;chr10;127800917-127802207;-f 0.001;.txt index 662b3c6..7e03990 100644 --- a/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr10.LGINS30.bam;chr10;127800917-127802207;-f 0.001;.txt +++ b/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr10.LGINS30.bam;chr10;127800917-127802207;-f 0.001;.txt @@ -1,5 +1,5 @@ Simple,hg19.fa,Colo829.chr10.LGINS30.bam,chr10,127800917,127802207,-f 0.001 -Colo829.chr10.LGINS30 testbed chr10 127801374 127801374 G GGAAACTCCTGAAACCCAGTGTCCTCCT 9 3 2 4 2 1 G/+27 0.3333 2;2 20.1 1 39.2 1 62.4 6.000 0.3750 0.3333 7 2.000 3 1.7 3 8 CTGGGGATACAGTGTGGACA GAAACTCATATTCCTGAAAC chr10:127800918-127802207 Insertion 0 0 +Colo829.chr10.LGINS30 testbed chr10 127801374 127801374 G GGAAACTCCTGAAACCCAGTGTCCTCCT 9 3 2 4 2 1 G/+27 0.3333 2;2 19.3 1 37.7 1 60.0 6.000 0.3750 0.3333 7 2.000 3 1.7 3 8 CTGGGGATACAGTGTGGACA GAAACTCATATTCCTGAAAC chr10:127800918-127802207 Insertion 0 0 Colo829.chr10.LGINS30 testbed chr10 127801469 127801469 T C 12 5 4 3 1 4 T/C 0.4167 2;2 16.4 1 41.0 0 60.0 10.000 0.4167 0 1 2.000 1 2.2 5 12 TATTCCTGAAACCCAGTGTC TCCTGAAACTCATATTCAGG chr10:127800918-127802207 SNV 0 0 Colo829.chr10.LGINS30 testbed chr10 127801479 127801479 T C 11 3 5 3 1 2 T/C 0.2727 2;2 11.3 1 41.0 0 60.0 6.000 0.3000 0 0 1.000 1 2.7 3 10 ACCCAGTGTCTTCCTGAAAC CATATTCAGGAAACCCATAT chr10:127800918-127802207 SNV 0 0 Colo829.chr10.LGINS30 testbed chr10 127801413 127801413 T C 11 5 1 5 3 2 T/C 0.4545 2;2 29.0 1 35.2 1 48.0 4.000 0.4000 0 0 1.000 1 1.2 4 10 ACCCAGTGTCCTCCTGAAAC CATATTCCTGAAACCCAGTG chr10:127800918-127802207 SNV 0 0 diff --git a/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr20.DUPDiscSV.bam;chr20;47124929-47131802;-f 0.001;.txt b/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr20.DUPDiscSV.bam;chr20;47124929-47131802;-f 0.001;.txt index 3527805..35e3c79 100644 --- a/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr20.DUPDiscSV.bam;chr20;47124929-47131802;-f 0.001;.txt +++ b/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr20.DUPDiscSV.bam;chr20;47124929-47131802;-f 0.001;.txt @@ -53,7 +53,7 @@ Colo829.chr20.DUPDiscSV testbed chr20 47131750 47131750 C T 194 17 85 89 12 5 C/ Colo829.chr20.DUPDiscSV testbed chr20 47131747 47131747 G A 188 14 80 91 9 5 G/A 0.0745 2;2 39.1 1 36.1 1 55.7 6.000 0.0732 0.0053 0 2.000 1 6.1 12 164 TCACCAGCTTCCTGACCCTC AACTACAACAAAATTGCTCC chr20:47124930-47131802 SNV 0 0 Colo829.chr20.DUPDiscSV testbed chr20 47131745 47131745 T A 181 9 83 89 5 4 T/A 0.0497 2;2 23.9 1 34.1 1 45.2 3.500 0.0458 0 0 1.000 1 5.7 7 153 GGTCACCAGCTTCCTGACCC CGAACTACAACAAAATTGCT chr20:47124930-47131802 SNV 0 0 Colo829.chr20.DUPDiscSV testbed chr20 47131774 47131777 ATCA GTCG 202 5 92 96 5 0 ATCA/GTCG 0.0248 2;0 28.0 1 30.8 1 23.8 1.500 0.0184 0.0099 1 1.000 1 7.0 3 163 AACAAAATTGCTCCTCCCTG GCAGCTCCACCAGCCTCAAA chr20:47124930-47131802 Complex 0 0 -Colo829.chr20.DUPDiscSV testbed chr20 47131764 47131764 C CTCCTCCCGGATCAGCAGCTCCACCAGCCTCAAACTCGAACAAGACTTCTCCTCCCCAGGTTGCCAGCTACCAGACCCTCGAATTACAACAACATTGCTCCTCCCTGGGTCTGCAGCTCCACGACCCTCAGACCAGAAGAAGACCTCTCCTCCCCTGGGTCGCCAGCTTCCTGACCCTCGAATTACAACCAAATAGT 226 11 92 94 3 8 C/+196 0.0487 2;2 19.5 1 39.6 1 44.0 22.000 0.0608 0.0487 7 2.000 1 6.0 11 181 CTCGAACTACAACAAAATTG TCCTCCCTGATCAGCAGCTC chr20:47124930-47131802 Insertion 0 11-0-0 +Colo829.chr20.DUPDiscSV testbed chr20 47131764 47131764 C CTCCTCCCGGATCAGCAGCTCCACCAGCCTCAAACTCGAACAAGACTTCTCCTCCCCAGGTTGCCAGCTACCAGACCCTCGAATTACAACAACATTGCTCCTCCCTGGGTCTGCAGCTCCACGACCCTCAGACCAGAAGAAGACCTCTCCTCCCCTGGGTCGCCAGCTTCCTGACCCTCGAATTACAACCAAATAGT 226 11 92 94 3 8 C/+196 0.0487 2;2 18.7 1 38.1 1 42.3 22.000 0.0608 0.0487 7 2.000 1 6.0 11 181 CTCGAACTACAACAAAATTG TCCTCCCTGATCAGCAGCTC chr20:47124930-47131802 Insertion 0 11-0-0 Colo829.chr20.DUPDiscSV testbed chr20 47131762 47131762 T A 200 5 94 95 2 3 T/A 0.0250 2;2 50.2 1 39.4 1 52.6 10.000 0.0291 0 0 1.000 1 6.2 5 172 CCCTCGAACTACAACAAAAT GCTCCTCCCTGATCAGCAGC chr20:47124930-47131802 SNV 0 0 Colo829.chr20.DUPDiscSV testbed chr20 47131762 47131764 TGC AGT 200 4 94 95 3 1 TGC/AGT 0.0200 2;2 23.2 1 41.0 0 49.0 8.000 0.0233 0 0 1.000 1 5.2 4 172 CCCTCGAACTACAACAAAAT TCCTCCCTGATCAGCAGCTC chr20:47124930-47131802 Complex 0 0 Colo829.chr20.DUPDiscSV testbed chr20 47131663 47131663 A ATGCTCCTGCCTGGGTCTGCAGCTCCACGACCCTGAAACTAGAACAAGACCTCTCCTCCCTGGGTCACCAGCTTCCTGACCCTCGAACTACAACAAAATTGCTCCTCCCTGATCAGCAGCTCCACCAGCCTCAAACTCGAACAAGACTTCTCCTCCCCAGGTTGCCAGCTACCAGACCCTCGAATTACAACAACATTGCTCCTCCCTGGGTCTGCAGCTCCACGACCCTCAGACCAGAAGAAGACCTCTCCTCCCCTGGGTCGCCAGCTTCCAGACCCTCGAATTACAACCAAAT 118 15 8 6 10 5 A/+294 0.1271 2;2 13.5 1 37.5 1 52.5 30.000 0.5357 0.1271 70 2.000 1 5.8 15 28 ACCCTCGAACTAAAACAACA TGCTCCTGCCTGGGTCTGCA chr20:47124930-47131802 Insertion 0 15-0-0 diff --git a/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr20.MarkingDUPSV.bam;chr20;47131954-47132045;-f 0.001;.txt b/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr20.MarkingDUPSV.bam;chr20;47131954-47132045;-f 0.001;.txt index bf81686..d62fd3b 100644 --- a/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr20.MarkingDUPSV.bam;chr20;47131954-47132045;-f 0.001;.txt +++ b/testdata/integrationtestcases/Simple;hg19.fa;Colo829.chr20.MarkingDUPSV.bam;chr20;47131954-47132045;-f 0.001;.txt @@ -16,7 +16,7 @@ Colo829.chr20.MarkingDUPSV testbed chr20 47132001 47132001 C G 190 10 90 85 5 5 Colo829.chr20.MarkingDUPSV testbed chr20 47132001 47132001 C T 190 5 90 85 2 3 C/T 0.0263 2;2 27.4 1 31.6 1 60.0 4.000 0.0234 0 0 2.000 1 5.2 4 171 CCACGACCCTCAAACTCCAA AACACTTCTCTTCCCTGGGT chr20:47131955-47132045 SNV 0 0 Colo829.chr20.MarkingDUPSV testbed chr20 47132031 47132031 C T 181 4 90 87 2 2 C/T 0.0221 2;2 58.8 1 29.2 1 60.0 3.000 0.0182 0 0 2.000 1 6.0 3 165 CTTCCCTGGGTTGCCAGCTA CGGACCCTTGAATTACAACA chr20:47131955-47132045 SNV 0 0 Colo829.chr20.MarkingDUPSV testbed chr20 47132021 47132021 T G 182 9 86 86 5 4 T/G 0.0495 2;2 32.8 1 32.7 1 59.4 2.000 0.0370 0 0 2.000 1 4.2 6 162 CAACACTTCTCTTCCCTGGG TGCCAGCTACCGGACCCTTG chr20:47131955-47132045 SNV 0 0 -Colo829.chr20.MarkingDUPSV testbed chr20 47131764 47131764 C CTCCTCCCGGATCAGCAGCTCCACCAGCCTCAAACTCGAACAAGACTTCTCCTCCCCAGGTTGCCAGCTACCAGACCCTCGAATTACAACAACATTGCTCCTCCCTGGGTCTGCAGCTCCACGACCCTCAGACCAGAAGAAGACCTCTCCTCCCCTGGGTCGCCAGCTTCCTGACCCTCGAATTACAACCAAATAGT 296 8 64 81 3 5 C/+196 0.0270 2;2 22.0 1 40.6 1 45.1 16.000 0.0571 0.0270 7 2.000 1 5.8 8 140 CTCGAACTACAACAAAATTG TCCTCCCTGATCAGCAGCTC chr20:47131955-47132045 Insertion 0 8-1-1 +Colo829.chr20.MarkingDUPSV testbed chr20 47131764 47131764 C CTCCTCCCGGATCAGCAGCTCCACCAGCCTCAAACTCGAACAAGACTTCTCCTCCCCAGGTTGCCAGCTACCAGACCCTCGAATTACAACAACATTGCTCCTCCCTGGGTCTGCAGCTCCACGACCCTCAGACCAGAAGAAGACCTCTCCTCCCCTGGGTCGCCAGCTTCCTGACCCTCGAATTACAACCAAATAGT 296 8 64 81 3 5 C/+196 0.0270 2;2 21.1 1 39.0 1 43.4 16.000 0.0571 0.0270 7 2.000 1 5.8 8 140 CTCGAACTACAACAAAATTG TCCTCCCTGATCAGCAGCTC chr20:47131955-47132045 Insertion 0 8-1-1 Colo829.chr20.MarkingDUPSV testbed chr20 47132020 47132020 G T 184 9 88 87 4 5 G/T 0.0489 2;2 25.9 1 35.0 1 60.0 8.000 0.0485 0.0054 1 2.000 1 4.0 8 165 ACAACACTTCTCTTCCCTGG TTGCCAGCTACCGGACCCTT chr20:47131955-47132045 SNV 0 0 Colo829.chr20.MarkingDUPSV testbed chr20 47132019 47132019 G C 185 4 90 89 2 2 G/C 0.0216 2;2 48.8 1 35.2 1 60.0 3.000 0.0190 0 0 3.000 1 6.0 3 158 AACAACACTTCTCTTCCCTG GTTGCCAGCTACCGGACCCT chr20:47131955-47132045 SNV 0 0 Colo829.chr20.MarkingDUPSV testbed chr20 47132017 47132017 T C 184 3 88 88 2 1 T/C 0.0163 2;2 22.7 1 28.3 1 20.0 2.000 0.0130 0 0 3.000 1 6.7 2 154 CCAACAACACTTCTCTTCCC GGGTTGCCAGCTACCGGACC chr20:47131955-47132045 SNV 0 0 diff --git a/testdata/integrationtestcases/Simple;hg38.fa;2-420233.chr7.Negative.bam;chr7;157482463-157483329;-f0.01-Q10-F0x700.txt b/testdata/integrationtestcases/Simple;hg38.fa;2-420233.chr7.Negative.bam;chr7;157482463-157483329;-f0.01-Q10-F0x700.txt index d1443b9..0f2bf14 100644 --- a/testdata/integrationtestcases/Simple;hg38.fa;2-420233.chr7.Negative.bam;chr7;157482463-157483329;-f0.01-Q10-F0x700.txt +++ b/testdata/integrationtestcases/Simple;hg38.fa;2-420233.chr7.Negative.bam;chr7;157482463-157483329;-f0.01-Q10-F0x700.txt @@ -12,7 +12,7 @@ Simple,hg38.fa,2-420233.chr7.Negative.bam,chr7,157482463,157483329,-f 0.01 -Q 10 2-420233.chr7.Negative testbed chr7 157482544 157482544 G C 23 2 10 9 1 1 G/C 0.0870 2;2 7.0 0 37.0 0 11.5 4.000 0.0909 0 0 2.000 1 4.0 2 22 GTGTGGTATGTGTGGTGTGT GTGTGTGTCGTGTGTGTGGT chr7:157482464-157483329 SNV 0 0 2-420233.chr7.Negative testbed chr7 157482545 157482546 GT TC 23 2 9 11 1 1 GT/TC 0.0870 2;2 15.0 0 37.0 0 60.0 4.000 0.1000 0 0 4.000 2 5.0 2 20 TGTGGTATGTGTGGTGTGTG GTGTGTCGTGTGTGTGGTGT chr7:157482464-157483329 Complex 0 0 2-420233.chr7.Negative testbed chr7 157482553 157482555 CGT C 19 5 6 8 3 2 G/-2 0.2632 2;2 33.4 1 37.0 0 56.0 10.000 0.2778 0 7 4.000 2 0.4 5 18 GTGTGGTGTGTGGTGTGTGT GTGTGTGGTGTGTGTGTGGT chr7:157482464-157483329 Deletion 0 0 -2-420233.chr7.Negative testbed chr7 157482553 157482553 C CGTGTGTGGT 19 6 4 5 2 4 C/+9 0.3158 2;2 37.4 1 37.3 1 51.3 12.000 0.3529 0 7 5.000 2 2.9 6 17 GTGTGGTGTGTGGTGTGTGT GTGTGTGTGGTGTGTGTGTG chr7:157482464-157483329 Insertion 0 0 +2-420233.chr7.Negative testbed chr7 157482553 157482553 C CGTGTGTGGT 19 6 4 5 2 4 C/+9 0.3158 2;2 36.0 1 35.9 1 49.3 12.000 0.3529 0 7 5.000 2 2.9 6 17 GTGTGGTGTGTGGTGTGTGT GTGTGTGTGGTGTGTGTGTG chr7:157482464-157483329 Insertion 0 0 2-420233.chr7.Negative testbed chr7 157482553 157482553 C G 19 2 4 5 1 1 C/G 0.1053 2;2 22.0 0 37.0 0 60.0 4.000 0.1176 0 6 1.000 1 5.0 2 17 GTGTGGTGTGTGGTGTGTGT GTGTGTGTGGTGTGTGTGTG chr7:157482464-157483329 SNV 0 0 2-420233.chr7.Negative testbed chr7 157482515 157482515 A G 16 2 7 7 2 0 A/G 0.1250 2;0 16.0 0 37.0 0 44.0 4.000 0.1667 0 3 1.000 1 3.0 2 12 TGGTGTGTGTGGTGTGTGTC TGTGGTGTGTGTGGTATGTG chr7:157482464-157483329 SNV 0 0 2-420233.chr7.Negative testbed chr7 157483281 157483281 G A 8 8 0 0 3 5 A/A 1.0000 0;2 38.6 1 37.0 0 60.0 16.000 1.0000 0 0 1.000 1 2.6 8 8 TAGGTATTTCTCCTAATGCT TCCCTCCCCGCTCCCCCCAC chr7:157482464-157483329 SNV 0 0 diff --git a/testdata/integrationtestcases/Simple;hg38.fa;DelOutOfBound.bam;chr1;150578117-150578617;-f0.001--deldupvar.txt b/testdata/integrationtestcases/Simple;hg38.fa;DelOutOfBound.bam;chr1;150578117-150578617;-f0.001--deldupvar.txt index 7bd73eb..83fe8b6 100644 --- a/testdata/integrationtestcases/Simple;hg38.fa;DelOutOfBound.bam;chr1;150578117-150578617;-f0.001--deldupvar.txt +++ b/testdata/integrationtestcases/Simple;hg38.fa;DelOutOfBound.bam;chr1;150578117-150578617;-f0.001--deldupvar.txt @@ -4,4 +4,4 @@ DelOutOfBound.chr1_150578117_150578617 testbed chr1 150578577 150578577 C T 1847 DelOutOfBound.chr1_150578117_150578617 testbed chr1 150578149 150578149 C T 1673 2 1306 365 2 0 C/T 0.0012 2;0 63.5 1 45.0 0 60.0 4.000 0.0012 0 2 1.000 1 1.0 2 1671 AGAGCCTGCAAACAGCCGTG GTCATAAAAACCTTTAGATA chr1:150578118-150578617 SNV 0 0 DelOutOfBound.chr1_150578117_150578617 testbed chr1 150578151 150578151 T C 1683 2 1308 373 1 1 T/C 0.0012 2;2 38.0 1 45.0 0 60.0 4.000 0.0012 0 0 1.000 1 1.0 2 1682 AGCCTGCAAACAGCCGTGCG CATAAAAACCTTTAGATATC chr1:150578118-150578617 SNV 0 0 DelOutOfBound.chr1_150578117_150578617 testbed chr1 150578182 150578183 TA T 2219 3 1580 636 2 1 A/-1 0.0014 2;2 62.3 1 45.0 0 60.0 6.000 0.0014 0 7 8.000 1 0 3 2219 TTTAGATATCCCCACCTCTC AAAAAAATCCTTCATTCTAC chr1:150578118-150578617 Deletion 0 0 -DelOutOfBound.chr1_150578117_150578617 testbed chr1 150578182 150578182 T TA 2182 6 1414 565 5 1 T/+1 0.0027 2;2 34.0 1 47.0 1 62.8 12.000 0.0030 0.0005 8 9.000 1 0.3 6 1982 TTTAGATATCCCCACCTCTC AAAAAAAATCCTTCATTCTA chr1:150578118-150578617 Insertion 0 0 +DelOutOfBound.chr1_150578117_150578617 testbed chr1 150578182 150578182 T TA 2182 6 1414 565 5 1 T/+1 0.0027 2;2 32.5 1 44.9 1 60.0 12.000 0.0030 0.0005 8 9.000 1 0.3 6 1982 TTTAGATATCCCCACCTCTC AAAAAAAATCCTTCATTCTA chr1:150578118-150578617 Insertion 0 0 diff --git a/testdata/integrationtestcases/Simple;hg38.fa;DelOutOfBound.bam;chr1;150578117-150578617;-f0.001.txt b/testdata/integrationtestcases/Simple;hg38.fa;DelOutOfBound.bam;chr1;150578117-150578617;-f0.001.txt index 09ff283..5340fe6 100644 --- a/testdata/integrationtestcases/Simple;hg38.fa;DelOutOfBound.bam;chr1;150578117-150578617;-f0.001.txt +++ b/testdata/integrationtestcases/Simple;hg38.fa;DelOutOfBound.bam;chr1;150578117-150578617;-f0.001.txt @@ -5,4 +5,4 @@ DelOutOfBound.chr1_150578117_150578617 testbed chr1 150577490 150578242 TCCTAGAA DelOutOfBound.chr1_150578117_150578617 testbed chr1 150578149 150578149 C T 1673 2 1306 365 2 0 C/T 0.0012 2;0 63.5 1 45.0 0 60.0 4.000 0.0012 0 2 1.000 1 1.0 2 1671 AGAGCCTGCAAACAGCCGTG GTCATAAAAACCTTTAGATA chr1:150578118-150578617 SNV 0 0 DelOutOfBound.chr1_150578117_150578617 testbed chr1 150578151 150578151 T C 1683 2 1308 373 1 1 T/C 0.0012 2;2 38.0 1 45.0 0 60.0 4.000 0.0012 0 0 1.000 1 1.0 2 1682 AGCCTGCAAACAGCCGTGCG CATAAAAACCTTTAGATATC chr1:150578118-150578617 SNV 0 0 DelOutOfBound.chr1_150578117_150578617 testbed chr1 150578182 150578183 TA T 2219 3 1580 636 2 1 A/-1 0.0014 2;2 62.3 1 45.0 0 60.0 6.000 0.0014 0 7 8.000 1 0 3 2219 TTTAGATATCCCCACCTCTC AAAAAAATCCTTCATTCTAC chr1:150578118-150578617 Deletion 0 0 -DelOutOfBound.chr1_150578117_150578617 testbed chr1 150578182 150578182 T TA 2182 6 1414 565 5 1 T/+1 0.0027 2;2 34.0 1 47.0 1 62.8 12.000 0.0030 0.0005 8 9.000 1 0.3 6 1982 TTTAGATATCCCCACCTCTC AAAAAAAATCCTTCATTCTA chr1:150578118-150578617 Insertion 0 0 +DelOutOfBound.chr1_150578117_150578617 testbed chr1 150578182 150578182 T TA 2182 6 1414 565 5 1 T/+1 0.0027 2;2 32.5 1 44.9 1 60.0 12.000 0.0030 0.0005 8 9.000 1 0.3 6 1982 TTTAGATATCCCCACCTCTC AAAAAAAATCCTTCATTCTA chr1:150578118-150578617 Insertion 0 0 diff --git a/testdata/integrationtestcases/Simple;hg38.fa;NA12878.bam;chr6;137219200-137219700;-f0.001-Q10-F0x700.txt b/testdata/integrationtestcases/Simple;hg38.fa;NA12878.bam;chr6;137219200-137219700;-f0.001-Q10-F0x700.txt index d8d816f..6ce578b 100644 --- a/testdata/integrationtestcases/Simple;hg38.fa;NA12878.bam;chr6;137219200-137219700;-f0.001-Q10-F0x700.txt +++ b/testdata/integrationtestcases/Simple;hg38.fa;NA12878.bam;chr6;137219200-137219700;-f0.001-Q10-F0x700.txt @@ -1,6 +1,6 @@ Simple,hg38.fa,NA12878.chr6_137219200-137219700.bam,chr6,137219200,137219700,-f 0.001 -Q 10 -F 0x700 NA12878.chr6_137219200-137219700 testbed chr6 137219309 137219309 G T 889 2 524 363 1 1 G/T 0.0022 2;2 22.5 1 45.0 0 60.0 4.000 0.0022 0 0 2.000 1 1.5 2 889 ACCCTGCATGACAAGGGGTA GAGAAAGAGGAGAGCCATGC chr6:137219201-137219700 SNV 0 0 -NA12878.chr6_137219200-137219700 testbed chr6 137219629 137219629 G GT 537 4 125 387 1 3 G/+1 0.0074 2;2 10.1 1 46.8 1 62.4 8.000 0.0078 0.0037 7 8.000 1 0.5 4 516 ATTCTGCAATTCTTCTTCCA TTTTTTTCGGTTTCCTGGGG chr6:137219201-137219700 Insertion 0 0 +NA12878.chr6_137219200-137219700 testbed chr6 137219629 137219629 G GT 537 4 125 387 1 3 G/+1 0.0074 2;2 9.8 1 45.0 1 60.0 8.000 0.0078 0.0037 7 8.000 1 0.5 4 516 ATTCTGCAATTCTTCTTCCA TTTTTTTCGGTTTCCTGGGG chr6:137219201-137219700 Insertion 0 0 NA12878.chr6_137219200-137219700 testbed chr6 137219500 137219500 T C 1416 4 691 721 4 0 T/C 0.0028 2;0 8.8 1 35.0 1 60.0 3.000 0.0021 0.0014 0 1.000 1 1.0 3 1415 GGAAGCCGCAGGAGGCGGAC CAGGCGCAGCACCCAGCAGT chr6:137219201-137219700 SNV 0 0 NA12878.chr6_137219200-137219700 testbed chr6 137219432 137219432 C T 1414 2 751 661 1 1 C/T 0.0014 2;2 59.0 1 45.0 0 60.0 4.000 0.0014 0 0 2.000 1 1.0 2 1414 TTCCGTCACCGGGGTCTGTG CGGCGTCGGCAGGAGGCGGG chr6:137219201-137219700 SNV 0 0 NA12878.chr6_137219200-137219700 testbed chr6 137219496 137219496 G T 1438 2 710 726 1 1 G/T 0.0014 2;2 56.5 1 45.0 0 60.0 4.000 0.0014 0 0 2.000 1 1.5 2 1438 TCCGGGAAGCCGCAGGAGGC GACTCAGGCGCAGCACCCAG chr6:137219201-137219700 SNV 0 0 diff --git a/testdata/integrationtestcases/Simple;hg38.fa;NAP1L1.NegativeRRC.bam;chr12;76036587-76085033;-f 0.001.txt b/testdata/integrationtestcases/Simple;hg38.fa;NAP1L1.NegativeRRC.bam;chr12;76036587-76085033;-f 0.001.txt index d0a9608..c06443c 100644 --- a/testdata/integrationtestcases/Simple;hg38.fa;NAP1L1.NegativeRRC.bam;chr12;76036587-76085033;-f 0.001.txt +++ b/testdata/integrationtestcases/Simple;hg38.fa;NAP1L1.NegativeRRC.bam;chr12;76036587-76085033;-f 0.001.txt @@ -1,10 +1,10 @@ Simple,hg38.fa,NAP1L1.NegativeRRC.bam,chr12,76036587,76085033,-f 0.1 NAP1L1.NegativeRRC testbed chr12 76047375 76047375 T TA 86 43 18 24 19 24 T/+1 0.5000 2;2 41.1 1 35.0 1 60.0 42.000 0.5122 0.0465 0 17.000 1 1.3 42 82 AACCCAAAGAAAATGAATTT TTTTTTTTTTTTTAAAAGAA chr12:76036588-76085033 Insertion 0 0 NAP1L1.NegativeRRC testbed chr12 76045954 76045954 C T 9 9 0 0 4 5 T/T 1.0000 0;2 46.8 1 37.0 1 60.0 18.000 1.0000 0.1111 1 3.000 1 1.0 9 9 AGATAACTCAGAATAATAAC CAGAATATAACCTATCAGGA chr12:76036588-76085033 SNV 0 0 -NAP1L1.NegativeRRC testbed chr12 76046488 76046488 T TA 91 16 42 20 9 6 T/+1 0.1758 2;2 38.9 1 37.0 1 60.0 32.000 0.2025 0.0330 11 12.000 1 0.4 16 79 GCATTTCGATGAACTATGGT AAAAAAAAAAAGCACATAGT chr12:76036588-76085033 Insertion 0 0 +NAP1L1.NegativeRRC testbed chr12 76046488 76046488 T TA 91 16 42 20 9 6 T/+1 0.1758 2;2 36.7 1 34.8 1 56.5 32.000 0.2025 0.0330 11 12.000 1 0.4 16 79 GCATTTCGATGAACTATGGT AAAAAAAAAAAGCACATAGT chr12:76036588-76085033 Insertion 0 0 NAP1L1.NegativeRRC testbed chr12 76060186 76060186 G A 1374 725 304 342 357 368 G/A 0.5277 2;2 41.1 1 36.5 1 54.9 180.250 0.5349 0.0211 0 1.000 1 1.1 721 1348 GCATACTTCCTTTCAAGATC TGAACTTCCTCATAGAATTT chr12:76036588-76085033 SNV 0 0 NAP1L1.NegativeRRC testbed chr12 76048101 76048102 CA C 105 17 47 38 9 8 A/-1 0.1619 2;2 39.8 1 36.8 1 60.0 34.000 0.1650 0.0286 13 14.000 1 0.9 17 103 GTTCTTCAAGGAAAAAATTA AAAAAAAAAAAAAGGTATTT chr12:76036588-76085033 Deletion 0 0 NAP1L1.NegativeRRC testbed chr12 76056120 76056120 T C 1438 1433 0 0 558 875 C/C 0.9965 0;2 35.2 1 35.4 1 55.6 32.326 0.9993 0 0 6.000 1 1.3 1390 1391 GGGTCTTCTTTTTCTTCATC TTTTTCTCATCTTCAATCTT chr12:76036588-76085033 SNV 0 0 NAP1L1.NegativeRRC testbed chr12 76051637 76051637 C T 2 2 0 0 1 1 T/T 1.0000 0;2 38.5 1 37.0 0 60.0 4.000 1.0000 0 0 1.000 1 1.0 2 2 CGCCACCAGAGCAGCTGGGA TACAGGTGCCTGAAGCTGTA chr12:76036588-76085033 SNV 0 0 -NAP1L1.NegativeRRC testbed chr12 76036918 76036918 C CA 2 2 0 0 1 1 +1/+1 1.0000 0;2 53.2 1 40.2 0 65.2 4.000 1.0000 0 14 15.000 1 1.6 2 2 CCCCGTCTCTACTAAAAATA AAAAAAAAAAAAAACCCACA chr12:76036588-76085033 Insertion 0 0 +NAP1L1.NegativeRRC testbed chr12 76036918 76036918 C CA 2 2 0 0 1 1 +1/+1 1.0000 0;2 49.0 1 37.0 0 60.0 4.000 1.0000 0 14 15.000 1 1.6 2 2 CCCCGTCTCTACTAAAAATA AAAAAAAAAAAAAACCCACA chr12:76036588-76085033 Insertion 0 0 NAP1L1.NegativeRRC testbed chr12 76045879 76045879 A G 8 4 4 0 1 3 A/G 0.5000 0;2 47.0 1 37.0 0 60.0 8.000 0.5000 0 2 1.000 1 1.5 4 8 AGACTTACTTGGCAGTGTGC TGGGCTGCTGGAAACTACAA chr12:76036588-76085033 SNV 0 0 diff --git a/testdata/integrationtestcases/Simple;hg38.fa;invalid-char.bam;chr9;107331070-107331095;-f0.001.txt b/testdata/integrationtestcases/Simple;hg38.fa;invalid-char.bam;chr9;107331070-107331095;-f0.001.txt index 035c3f8..5208f31 100644 --- a/testdata/integrationtestcases/Simple;hg38.fa;invalid-char.bam;chr9;107331070-107331095;-f0.001.txt +++ b/testdata/integrationtestcases/Simple;hg38.fa;invalid-char.bam;chr9;107331070-107331095;-f0.001.txt @@ -1,2 +1,2 @@ Simple,hg38.fa,invalid-char.bam,chr9,107331070,107331095,-f 0.001 -invalid-char testbed chr9 107331074 107331074 C CT 14 13 1 0 7 5 C/+1 0.9286 0;2 20.2 1 34.1 1 60.6 12.000 0.9231 0.0714 8 9.000 1 0 12 13 TTGCTTTTGTTTTTTGTTTC TTTTTTTTAACCATCTGATA chr9:107331071-107331095 Insertion 0 0 +invalid-char testbed chr9 107331074 107331074 C CT 14 13 1 0 7 5 C/+1 0.9286 0;2 18.6 1 31.4 1 55.8 12.000 0.9231 0.0714 8 9.000 1 0 12 13 TTGCTTTTGTTTTTTGTTTC TTTTTTTTAACCATCTGATA chr9:107331071-107331095 Insertion 0 0 diff --git a/testdata/integrationtestcases/Somatic;GRCh37.fa;threeIndels_zero_deletion_tumor.bam-threeIndels_zero_deletion_normal.bam;chr20;62354864-62374864;-f0.1-Q10-F0x700;.txt b/testdata/integrationtestcases/Somatic;GRCh37.fa;threeIndels_zero_deletion_tumor.bam-threeIndels_zero_deletion_normal.bam;chr20;62354864-62374864;-f0.1-Q10-F0x700;.txt index 60833f7..187dc34 100644 --- a/testdata/integrationtestcases/Somatic;GRCh37.fa;threeIndels_zero_deletion_tumor.bam-threeIndels_zero_deletion_normal.bam;chr20;62354864-62374864;-f0.1-Q10-F0x700;.txt +++ b/testdata/integrationtestcases/Somatic;GRCh37.fa;threeIndels_zero_deletion_tumor.bam-threeIndels_zero_deletion_normal.bam;chr20;62354864-62374864;-f0.1-Q10-F0x700;.txt @@ -2,23 +2,23 @@ Somatic,GRCh37.fa,threeIndels_zero_deletion_tumor.bam|threeIndels_zero_deletion_ threeIndels_zero_deletion_tumor testbed 20 62354914 62354914 T C 27 3 16 8 1 2 T/C 0.1111 2;2 36.3 1 28.3 1 28.7 2.000 0.0909 0 1.7 19 0 13 6 0 0 T/T 0 2;0 41.7 1 36.4 1 30.5 38.000 1.0000 0 0.5 0 1.000 1 TCCTCCCTTCTCCTCTGACA AGCTCCATCCTCCCTTCTCC 20:62354865-62374864 StrongSomatic SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62354987 62354987 G C 39 4 23 12 1 3 G/C 0.1026 2;2 45.2 1 27.5 1 60.0 3.000 0.0882 0 3.2 43 5 17 21 0 5 G/C 0.1163 2;0 36.6 1 21.4 1 55.4 0.667 0.0714 0.0233 3.4 0 1.000 1 ACATAGTTCCATCCTCCCTT TCCTCTGACATAGCTCCATC 20:62354865-62374864 AFDiff SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62355523 62355523 G A 83 33 32 18 16 17 G/A 0.3976 2;2 35.2 1 36.3 1 60.0 66.000 0.3976 0.0241 1.1 43 17 13 13 10 7 G/A 0.3953 2;2 38.9 1 34.8 1 60.0 16.000 0.3810 0 1.1 0 2.000 1 AGGTCAGGAGTTTAAGACCA CCTGGCCAACATGGTGAAAC 20:62354865-62374864 Germline SNV 0 0 0 0 -threeIndels_zero_deletion_tumor testbed 20 62355715 62355715 T TAA 61 27 7 8 11 16 T/+2 0.4426 2;2 48.9 1 37.9 0 61.4 54.000 0.4576 0 0.7 42 7 9 4 5 2 T/+2 0.1667 2;2 51.3 1 40.9 0 66.4 14.000 0.1750 0 0.5 17 19.000 1 TGACAGAGCGAGACTCTGCC AAAAAAAAAAAAAAAAAGAA 20:62354865-62374864 AFDiff Insertion 0 0 0 0 -threeIndels_zero_deletion_tumor testbed 20 62355715 62355715 T TA 61 19 7 8 9 9 T/+1 0.3115 2;2 42.7 1 38.8 0 62.9 38.000 0.3220 0 2.0 42 16 9 4 7 8 T/+1 0.3810 2;2 46.9 1 37.5 1 62.2 32.000 0.4000 0 2.1 17 18.000 1 TGACAGAGCGAGACTCTGCC AAAAAAAAAAAAAAAAAGAA 20:62354865-62374864 Germline Insertion 0 0 0 0 -threeIndels_zero_deletion_tumor testbed 20 62356025 62356025 A AT 98 34 29 18 22 12 A/+1 0.3469 2;2 46.7 1 35.9 1 60.9 33.000 0.4024 0 1.1 44 13 16 10 8 4 A/+1 0.2955 2;2 45.7 1 34.7 1 61.6 12.000 0.3243 0 2.5 18 19.000 1 TCTGAAGAACTTCATTTAGA TTTTTTTTTTTTTTTTTTGA 20:62354865-62374864 Germline Insertion 0 0 0 0 +threeIndels_zero_deletion_tumor testbed 20 62355715 62355715 T TAA 61 27 7 8 11 16 T/+2 0.4426 2;2 44.6 1 34.5 0 56.0 54.000 0.4576 0 0.7 42 7 9 4 5 2 T/+2 0.1667 2;2 46.4 1 37.0 0 60.0 14.000 0.1750 0 0.5 17 19.000 1 TGACAGAGCGAGACTCTGCC AAAAAAAAAAAAAAAAAGAA 20:62354865-62374864 AFDiff Insertion 0 0 0 0 +threeIndels_zero_deletion_tumor testbed 20 62355715 62355715 T TA 61 19 7 8 9 9 T/+1 0.3115 2;2 38.8 1 35.3 0 57.2 38.000 0.3220 0 2.0 42 16 9 4 7 8 T/+1 0.3810 2;2 42.7 1 34.2 1 56.6 32.000 0.4000 0 2.1 17 18.000 1 TGACAGAGCGAGACTCTGCC AAAAAAAAAAAAAAAAAGAA 20:62354865-62374864 Germline Insertion 0 0 0 0 +threeIndels_zero_deletion_tumor testbed 20 62356025 62356025 A AT 98 34 29 18 22 12 A/+1 0.3469 2;2 42.4 1 32.6 1 55.3 33.000 0.4024 0 1.1 44 13 16 10 8 4 A/+1 0.2955 2;2 41.5 1 31.5 1 55.9 12.000 0.3243 0 2.5 18 19.000 1 TCTGAAGAACTTCATTTAGA TTTTTTTTTTTTTTTTTTGA 20:62354865-62374864 Germline Insertion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62356571 62356571 C T 110 53 30 27 27 26 C/T 0.4818 2;2 42.4 1 36.5 1 59.3 106.000 0.4818 0.0091 2.0 54 27 12 15 13 14 C/T 0.5000 2;2 40.8 1 34.6 1 58.1 12.500 0.4902 0.0370 1.1 1 1.000 1 TGGTCTTGATCTCCTGACCT GTGATCCGCCCGCCTTGGCC 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62356626 62356626 G A 108 24 36 48 16 8 G/A 0.2222 2;2 40.2 1 36.5 1 60.0 48.000 0.2243 0.0185 2.8 68 0 27 41 0 0 G/G 0 2;0 43.9 1 36.5 1 58.9 136.000 1.0000 0 1.0 0 2.000 2 GATTACAGGCGTGAGCCACC CGCCCGGCTAGAATTTCTTG 20:62354865-62374864 StrongSomatic SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62356627 62356627 C T 108 57 22 29 29 28 C/T 0.5278 2;2 43.5 1 34.9 1 59.6 56.000 0.5234 0.0185 1.3 68 35 12 21 15 20 C/T 0.5147 2;2 44.7 1 33.5 1 59.3 16.500 0.5000 0.0147 1.3 0 2.000 2 ATTACAGGCGTGAGCCACCG GCCCGGCTAGAATTTCTTGT 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62356639 62356639 A C 102 28 33 41 17 11 A/C 0.2745 2;2 34.6 1 37.0 0 60.0 56.000 0.2745 0 2.6 68 0 26 42 0 0 A/C 0 2;0 21.0 0 11.0 0 60.0 0 0 0 2.0 1 3.000 1 AGCCACCGCGCCCGGCTAGA TTTCTTGTAGGACAGGCTTG 20:62354865-62374864 StrongSomatic SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62357330 62357330 G A 90 51 13 25 29 22 G/A 0.5667 2;2 32.7 1 37.0 1 60.0 102.000 0.5730 0.0111 1.1 46 16 20 10 6 10 G/A 0.3478 2;2 37.6 1 37.0 1 60.0 32.000 0.3478 0.0217 1.0 0 2.000 1 CCTGAGTAGTTGGGACTACC GAGTGTGCCACCACCATGCC 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62357442 62357442 C T 112 35 34 43 18 17 C/T 0.3125 2;2 40.9 1 35.9 1 60.0 34.000 0.3119 0.0268 1.6 37 25 3 9 8 17 C/T 0.6757 2;2 32.4 1 36.0 1 60.0 50.000 0.6757 0.0270 1.0 0 1.000 1 CTCAGGTGAACCACCTGCCT AGCCTCCCAAAGTACTAGGA 20:62354865-62374864 Germline SNV 0 0 0 0 -threeIndels_zero_deletion_tumor testbed 20 62357556 62357556 A ATT 97 79 8 3 49 30 A/+2 0.8144 2;2 40.0 1 36.6 1 60.2 158.000 0.7980 0.0825 0.8 52 46 0 4 26 19 +2/+2 0.8846 0;2 43.2 1 36.1 1 60.1 92.000 0.8364 0.0962 0.8 12 14.000 1 CCGTTGAGTACATCTAATTA TTTTTTTTTTTTGAGTCGGA 20:62354865-62374864 Germline Insertion 0 0 0 0 +threeIndels_zero_deletion_tumor testbed 20 62357556 62357556 A ATT 97 79 8 3 49 30 A/+2 0.8144 2;2 37.5 1 34.3 1 56.4 158.000 0.7980 0.0825 0.8 52 46 0 4 26 19 +2/+2 0.8846 0;2 40.5 1 33.9 1 56.3 92.000 0.8364 0.0962 0.8 12 14.000 1 CCGTTGAGTACATCTAATTA TTTTTTTTTTTTGAGTCGGA 20:62354865-62374864 Germline Insertion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62357837 62357837 G T 113 54 25 33 28 26 G/T 0.4779 2;2 36.3 1 35.5 1 59.3 26.000 0.4771 0.0354 1.2 58 32 10 16 19 13 G/T 0.5517 2;2 34.5 1 34.8 1 60.0 15.000 0.5357 0.0345 1.6 2 3.000 1 TGCTGGGATTACAGGCATGA CCCGGCCTTGAATTTTTTTT 20:62354865-62374864 Germline SNV 0 0 0 0 -threeIndels_zero_deletion_tumor testbed 20 62357867 62357867 T TTTTG 113 49 31 30 24 25 T/+4 0.4336 2;2 39.0 1 35.7 1 60.3 98.000 0.4667 0.0708 0.3 60 25 18 15 12 12 T/+4 0.4167 2;2 34.7 1 36.5 1 60.5 50.000 0.4545 0.0833 0.2 23 6.000 4 GAATTTTTTTTTAATAGGCT TTTGTTTGTTTGTTTGTTTG 20:62354865-62374864 Germline Insertion 0 0 0 0 +threeIndels_zero_deletion_tumor testbed 20 62357867 62357867 T TTTTG 113 49 31 30 24 25 T/+4 0.4336 2;2 34.7 1 31.8 1 53.7 98.000 0.4667 0.0708 0.3 60 25 18 15 12 12 T/+4 0.4167 2;2 30.9 1 32.5 1 53.8 50.000 0.4545 0.0833 0.2 23 6.000 4 GAATTTTTTTTTAATAGGCT TTTGTTTGTTTGTTTGTTTG 20:62354865-62374864 Germline Insertion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62358580 62358581 AT A 70 30 23 16 19 11 T/-1 0.4286 2;2 38.2 1 36.9 1 58.9 60.000 0.4348 0.0143 0.6 36 11 8 17 3 8 T/-1 0.3056 2;2 27.1 1 37.0 1 60.0 22.000 0.3333 0.0278 0.4 10 11.000 1 AACTCTGGAATTTCCATTTG TTTTTTTTTTCTTTTTTTCT 20:62354865-62374864 Germline Deletion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62358991 62358991 C T 58 30 13 15 14 16 C/T 0.5172 2;2 31.3 1 35.0 1 60.0 60.000 0.5172 0 2.7 27 10 7 10 5 5 C/T 0.3704 2;2 40.9 1 35.8 1 60.0 20.000 0.3704 0 1.6 2 1.000 1 GAGATCATGCCACTGCACTC AGCCTGGGTGAGAGAGTGGG 20:62354865-62374864 Germline SNV 0 0 0 0 -threeIndels_zero_deletion_tumor testbed 20 62359389 62359389 C CT 88 23 38 17 15 7 C/+1 0.2614 2;2 40.5 1 33.4 1 60.2 6.333 0.2754 0 2.3 46 9 20 14 6 3 C/+1 0.1957 2;2 48.9 1 37.7 1 66.0 18.000 0.2368 0 2.6 16 17.000 1 TCTGCTCAGATTTTTAAATT TTTTTTTTTTTTTTTTGAGA 20:62354865-62374864 AFDiff Insertion 0 0 0 0 +threeIndels_zero_deletion_tumor testbed 20 62359389 62359389 C CT 88 23 38 17 15 7 C/+1 0.2614 2;2 37.2 1 30.7 1 55.3 6.333 0.2754 0 2.3 46 9 20 14 6 3 C/+1 0.1957 2;2 44.4 1 34.3 1 60.0 18.000 0.2368 0 2.6 16 17.000 1 TCTGCTCAGATTTTTAAATT TTTTTTTTTTTTTTTTGAGA 20:62354865-62374864 AFDiff Insertion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62359469 62359469 A G 108 46 37 25 27 19 A/G 0.4259 2;2 39.1 1 32.9 1 60.0 8.200 0.4020 0.0185 1.7 47 24 13 10 12 12 A/G 0.5106 2;2 45.7 1 34.3 1 60.0 11.000 0.5000 0 1.7 0 2.000 1 TGCCATCTCAGCTCACTGCA CCTCCACCTCCTGAGTTCAA 20:62354865-62374864 Germline SNV 0 0 0 0 -threeIndels_zero_deletion_tumor testbed 20 62360386 62360386 C CT 108 46 37 15 27 19 C/+1 0.4259 2;2 41.7 1 33.8 1 61.3 10.500 0.4615 0.0278 1.2 44 12 18 12 7 4 C/+1 0.2727 2;2 43.7 1 31.4 1 60.1 10.000 0.2564 0.0455 0.5 15 16.000 1 AGATTATTTTTTCTTTTTTT TTTTTTTTTTTTTTTGAGAT 20:62354865-62374864 Germline Insertion 0 0 0 0 +threeIndels_zero_deletion_tumor testbed 20 62360386 62360386 C CT 108 46 37 15 27 19 C/+1 0.4259 2;2 38.4 1 31.2 1 56.4 10.500 0.4615 0.0278 1.2 44 12 18 12 7 4 C/+1 0.2727 2;2 40.3 1 29.0 1 55.5 10.000 0.2564 0.0455 0.5 15 16.000 1 AGATTATTTTTTCTTTTTTT TTTTTTTTTTTTTTTGAGAT 20:62354865-62374864 Germline Insertion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62360983 62360983 G A 58 21 17 20 11 10 G/A 0.3621 2;2 37.8 1 37.0 0 60.0 42.000 0.3621 0 1.3 31 0 16 15 0 0 G/G 0 2;0 36.2 1 35.4 1 60.0 30.000 1.0000 0 0.4 1 1.000 1 TCTCTTTTGCTCCATTGATC ATTTGCCTGTTCTCTTGGTT 20:62354865-62374864 StrongSomatic SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62361250 62361250 A G 92 91 0 0 59 32 G/G 0.9891 0;2 38.4 1 36.7 1 59.7 90.000 1.0000 0 1.3 48 48 0 0 29 19 G/G 1.0000 0;2 38.1 1 36.5 1 60.0 47.000 1.0000 0.0625 1.3 1 1.000 1 TGGCATGGTGGCACACTCCC TAGTCCCAGCCACTTGGGAG 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62361372 62361372 G ACACACACACACACA 70 39 8 0 16 23 GCG/+17 0.5571 0;2 36.5 1 35.4 1 60.0 38.000 0.5588 0.3429 1.7 37 26 3 1 14 12 GCG/+17 0.7027 2;2 30.0 1 34.8 1 60.0 25.000 0.6944 0.5946 1.8 0 0 0 AAGAGAGCAAGACTCTACTG CACACACACACACACACACA 20:62354865-62374864 Germline Complex 0 0 0 0 @@ -30,20 +30,20 @@ threeIndels_zero_deletion_tumor testbed 20 62362563 62362563 G T 91 91 0 0 33 58 threeIndels_zero_deletion_tumor testbed 20 62362698 62362698 T TTGG 85 76 3 6 32 44 T/+3 0.8941 2;2 39.1 1 35.7 1 59.4 152.000 0.8941 0.0353 0.6 57 52 3 1 30 22 +3/+3 0.9123 2;2 33.0 1 35.6 1 59.3 104.000 0.9123 0.2281 1.3 2 2.000 1 GTAAAGTGTACAGTTGGCCC TGTGTGTGTGAGATTGTGTA 20:62354865-62374864 Germline Insertion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62362885 62362885 G A 69 13 24 31 7 6 G/A 0.1884 2;2 42.5 1 33.2 1 60.0 12.000 0.1818 0 1.6 43 0 17 26 0 0 G/G 0 2;0 43.8 1 35.2 1 57.0 20.500 1.0000 0 1.7 0 3.000 2 GTGTGTGATTGTGTGCATAC TGTGTAAAGTGTACAGTTGG 20:62354865-62374864 StrongSomatic SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62362911 62362915 GGTGT G 69 29 12 27 13 16 G/-4 0.4203 2;2 38.8 1 36.2 1 60.0 58.000 0.4265 0.0580 1.0 46 23 11 10 9 14 G/-4 0.5000 2;2 39.0 1 37.0 1 58.0 46.000 0.5349 0.0652 1.9 4 4.000 2 AAAGTGTACAGTTGGCCCTT GTGTATGTGTGCATGTGCAT 20:62354865-62374864 Germline Deletion 0 0 0 0 -threeIndels_zero_deletion_tumor testbed 20 62363071 62363071 T TTGTG 64 25 19 20 9 15 T/+4 0.3906 2;2 39.7 1 36.8 1 60.3 50.000 0.4167 0.0781 0.3 47 30 8 9 14 15 T/+4 0.6383 2;2 38.7 1 37.1 1 60.1 60.000 0.6667 0.0638 0.8 8 6.000 2 GGCCCTTTGTGTGTGTGAGA TGTGTGTGCATACGTGTGTA 20:62354865-62374864 Germline Insertion 0 0 0 0 +threeIndels_zero_deletion_tumor testbed 20 62363071 62363071 T TTGTG 64 25 19 20 9 15 T/+4 0.3906 2;2 38.0 1 35.2 1 57.7 50.000 0.4167 0.0781 0.3 47 30 8 9 14 15 T/+4 0.6383 2;2 37.0 1 35.5 1 57.5 60.000 0.6667 0.0638 0.8 8 6.000 2 GGCCCTTTGTGTGTGTGAGA TGTGTGTGCATACGTGTGTA 20:62354865-62374864 Germline Insertion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62363301 62363301 A G 50 27 14 9 15 12 A/G 0.5400 2;2 32.5 1 37.0 1 60.0 54.000 0.5400 0.0200 1.1 59 38 13 8 20 18 A/G 0.6441 2;2 40.2 1 36.7 1 60.0 76.000 0.6441 0.0339 1.1 1 2.000 2 TGCGTAGGTTATATGCAAAC CTATGTCATTATATATAAGG 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62363640 62363642 CGT C 94 43 30 20 27 16 G/-2 0.4574 2;2 42.0 1 37.0 0 60.0 86.000 0.4624 0 0.6 54 25 13 16 9 16 G/-2 0.4630 2;2 39.3 1 36.5 1 60.0 50.000 0.4717 0.0556 1.3 9 5.000 2 CGCATGTGTGTGGGTGAGGG GTGTGTGTGCATGTGTGTGG 20:62354865-62374864 Germline Deletion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62363696 62363699 AGGT A 84 34 23 25 19 15 G/-3 0.4048 2;2 42.9 1 36.6 1 60.0 68.000 0.4146 0.0357 0.8 62 28 18 16 10 18 G/-3 0.4516 2;2 44.6 1 36.6 1 60.0 56.000 0.4746 0 1.4 1 5.000 2 TGTGTGCACGTGTGTGGGTG GTGTGTGTGCATGTGTCAGG 20:62354865-62374864 Germline Deletion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62363716 62363716 C T 76 44 19 13 20 24 C/T 0.5789 2;2 40.7 1 33.3 1 60.0 21.000 0.5915 0.0526 2.7 62 33 10 19 20 13 C/T 0.5323 2;2 35.2 1 32.8 1 60.0 10.000 0.5455 0.0323 2.8 0 1.000 1 AGGTGTGTGTGTGCATGTGT AGGGTGTGTGTGCGCGCATG 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62363727 62363727 T C 95 43 30 22 18 25 T/C 0.4526 2;2 43.2 1 35.6 1 60.0 42.000 0.4828 0.0105 2.7 64 29 15 20 18 11 T/C 0.4531 2;2 38.6 1 35.7 1 60.0 28.000 0.4667 0 2.8 0 4.000 2 TGCATGTGTCAGGGTGTGTG GCGCGCATGTGTGTGGGTGA 20:62354865-62374864 Germline SNV 0 0 0 0 -threeIndels_zero_deletion_tumor testbed 20 62363734 62363734 A ATGTGTGTGGGTGAGGGCCTGTGTGTGCG 98 11 36 31 1 10 A/+28 0.1122 2;2 27.6 1 38.2 1 62.4 22.000 0.1486 0.0918 1.7 63 11 25 21 3 7 A/+28 0.1746 2;2 24.2 1 36.8 1 62.4 22.000 0.2037 0.1429 1.8 42 1.500 1 GTCAGGGTGTGTGTGCGCGC TGTGTGTGGGTGAGGGCCTG 20:62354865-62374864 Germline Insertion 0 0 0 0 +threeIndels_zero_deletion_tumor testbed 20 62363734 62363734 A ATGTGTGTGGGTGAGGGCCTGTGTGTGCG 98 11 36 31 1 10 A/+28 0.1122 2;2 23.0 1 31.9 1 52.1 22.000 0.1486 0.0918 1.7 63 11 25 21 3 7 A/+28 0.1746 2;2 20.1 1 30.7 1 52.1 22.000 0.2037 0.1429 1.8 42 1.500 1 GTCAGGGTGTGTGTGCGCGC TGTGTGTGGGTGAGGGCCTG 20:62354865-62374864 Germline Insertion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62363762 62363762 G GCGCA 112 20 41 49 10 10 G/+4 0.1786 2;2 13.8 1 33.9 1 58.0 19.000 0.1727 0.0804 1.1 62 15 27 18 5 10 G/+4 0.2419 2;2 20.0 1 34.7 1 60.0 30.000 0.2727 0.0806 1.3 0 1.000 1 GGGTGAGGGCCTGTGTGTGC TGTGTGTGGGTGAGAGATGT 20:62354865-62374864 Germline Insertion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62363838 62363838 T C 98 96 1 1 43 53 C/C 0.9796 2;2 38.1 1 35.7 1 60.0 23.000 0.9787 0 2.6 49 48 0 0 24 24 C/C 0.9796 0;2 36.0 1 34.9 1 59.4 23.000 1.0000 0.0204 2.9 0 1.000 1 CATGTGTGTGGGTGAGGGCG ATGTGTGTGGGTGAGGGCAC 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62363858 62363858 C T 99 47 21 29 20 27 C/T 0.4747 2;2 38.7 1 34.6 1 59.1 22.500 0.4839 0.0202 3.5 52 28 14 9 10 18 C/T 0.5385 2;2 40.4 1 34.9 1 59.2 27.000 0.5510 0.0192 3.5 0 1.000 1 TATGTGTGTGGGTGAGGGCA GTGTGCGCGCGTGTGGGTGA 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62363869 62363869 G A 98 47 19 32 19 28 G/A 0.4796 2;2 37.6 1 35.6 1 58.5 22.500 0.4688 0.0102 3.4 58 31 14 13 12 19 G/A 0.5345 2;2 39.2 1 35.8 1 59.3 62.000 0.5636 0.0517 3.1 0 2.000 2 GTGAGGGCACGTGTGCGCGC TGTGGGTGAGATGGCGTGTG 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62363967 62363969 CTG C 73 30 15 28 6 24 T/-2 0.4110 2;2 34.9 1 37.0 1 60.0 60.000 0.4110 0.0274 0.7 60 25 15 20 13 12 T/-2 0.4167 2;2 43.2 1 37.0 1 60.0 50.000 0.4167 0.0167 0.7 3 2.000 2 TTATACGCGTGTCAGGGTCT TGTATGTGTATGACGTGTGA 20:62354865-62374864 Germline Deletion 0 0 0 0 -threeIndels_zero_deletion_tumor testbed 20 62364002 62364002 A ATG 60 60 3 0 15 44 +2/+2 1.0000 0;2 41.3 1 36.4 1 60.0 120.000 0.9524 0.0833 0.2 62 62 0 3 32 29 +2/+2 1.0000 0;2 38.3 1 35.8 1 60.1 124.000 0.9538 0.0968 0.4 9 5.000 2 ACGTGTGAGTACATGTGTTA TGTGTGTGTACATGTGTATA 20:62354865-62374864 Germline Insertion 0 0 0 0 -threeIndels_zero_deletion_tumor testbed 20 62364034 62364034 A ATG 63 59 1 5 19 39 +2/+2 0.9365 2;2 43.3 1 36.6 1 60.3 118.000 0.9077 0.1111 0.3 57 56 2 1 25 30 +2/+2 0.9825 2;2 35.7 1 35.9 1 60.2 112.000 0.9492 0.1228 0.5 7 4.000 2 ATGTGTATATGCCTGTGTGC TGTGTGTATGCATGTGTATA 20:62354865-62374864 Germline Insertion 0 0 0 0 +threeIndels_zero_deletion_tumor testbed 20 62364002 62364002 A ATG 60 60 3 0 15 44 +2/+2 1.0000 0;2 39.3 1 34.6 1 57.2 120.000 0.9524 0.0833 0.2 62 62 0 3 32 29 +2/+2 1.0000 0;2 36.5 1 34.1 1 57.3 124.000 0.9538 0.0968 0.4 9 5.000 2 ACGTGTGAGTACATGTGTTA TGTGTGTGTACATGTGTATA 20:62354865-62374864 Germline Insertion 0 0 0 0 +threeIndels_zero_deletion_tumor testbed 20 62364034 62364034 A ATG 63 59 1 5 19 39 +2/+2 0.9365 2;2 41.7 1 35.3 1 58.0 118.000 0.9077 0.1111 0.3 57 56 2 1 25 30 +2/+2 0.9825 2;2 34.4 1 34.6 1 57.9 112.000 0.9492 0.1228 0.5 7 4.000 2 ATGTGTATATGCCTGTGTGC TGTGTGTATGCATGTGTATA 20:62354865-62374864 Germline Insertion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62364127 62364127 C T 50 20 18 11 12 8 C/T 0.4000 2;2 40.5 1 35.8 1 60.0 40.000 0.4082 0.0200 1.2 60 24 18 16 13 11 C/T 0.4000 2;2 46.1 1 35.4 1 60.0 23.000 0.3966 0 1.1 11 1.000 1 CCTGTGTACGTATGTATATG GTGTGTGTATGCATGTGAGT 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62364180 62364180 G A 57 29 15 13 19 10 G/A 0.5088 2;2 37.9 1 36.6 1 60.0 58.000 0.5088 0.0526 1.1 65 31 15 18 14 17 G/A 0.4769 2;2 36.0 1 35.4 1 60.0 30.000 0.4762 0.0154 1.5 0 3.000 2 GTGTGTATGTGTACTTGTGT TGCCTGTGTGAGTGCATGTG 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62364376 62364376 G C 78 36 24 18 17 19 G/C 0.4615 2;2 40.2 1 36.3 1 59.4 35.000 0.4545 0 1.0 48 26 7 15 14 12 G/C 0.5417 2;2 41.0 1 36.5 1 60.0 52.000 0.5417 0.0417 1.1 1 1.000 1 GTGCATGTGTGTATGTGTGC TGAGTGTGTGCATGTGTGTG 20:62354865-62374864 Germline SNV 0 0 0 0 @@ -55,7 +55,7 @@ threeIndels_zero_deletion_tumor testbed 20 62368536 62368537 GC G 68 68 0 0 33 3 threeIndels_zero_deletion_tumor testbed 20 62368606 62368606 T C 77 44 20 13 26 18 T/C 0.5714 2;2 38.4 1 36.9 1 60.0 88.000 0.5867 0.0260 1.1 85 50 22 13 18 32 T/C 0.5882 2;2 32.7 1 35.7 1 60.0 24.000 0.5783 0.0235 1.2 0 2.000 1 CTATGGTGGCCACAGCTGTC TGCCCCTCCTCACGGCCGTG 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62369152 62369152 G C 65 13 17 35 13 0 G/C 0.2000 2;1 11.4 1 32.2 1 58.0 12.000 0.2000 0 3.0 60 5 15 40 5 0 G/C 0.0833 2;0 18.6 1 24.2 1 60.0 1.500 0.0545 0 2.4 0 6.000 1 GGCTGACGACCCCGCCCCCC CCCCCCACCTCTACCCCCAA 20:62354865-62374864 AFDiff SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62369300 62369300 C G 66 66 0 0 32 34 G/G 1.0000 0;2 37.3 1 36.6 1 60.0 65.000 1.0000 0 1.0 78 78 0 0 41 37 G/G 1.0000 0;2 33.0 1 36.8 1 60.0 156.000 1.0000 0.0385 1.1 0 1.000 1 CCAGGGTGGGGTCCGCAGGG ACCGACCAGCCTTCCTCGCC 20:62354865-62374864 Germline SNV 0 0 0 0 -threeIndels_zero_deletion_tumor testbed 20 62369426 62369426 C CGGGGCG 51 47 3 3 30 17 C/+6 0.9216 2;2 38.1 1 37.0 1 60.6 94.000 0.8868 0.1373 0.5 84 68 8 12 39 28 C/+6 0.8095 2;2 33.2 1 36.3 1 60.0 136.000 0.7907 0.2738 0.5 13 5.000 1 CAGCAGGGGTGAGCAGAGGG GGGGCGGGGGCGGCCGGGCG 20:62354865-62374864 Germline Insertion 0 0 0 0 +threeIndels_zero_deletion_tumor testbed 20 62369426 62369426 C CGGGGCG 51 47 3 3 30 17 C/+6 0.9216 2;2 35.5 1 34.4 1 56.5 94.000 0.8868 0.1373 0.5 84 68 8 12 39 28 C/+6 0.8095 2;2 30.9 1 33.9 1 55.9 136.000 0.7907 0.2738 0.5 13 5.000 1 CAGCAGGGGTGAGCAGAGGG GGGGCGGGGGCGGCCGGGCG 20:62354865-62374864 Germline Insertion 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62369887 62369887 G A 67 13 25 29 5 8 G/A 0.1940 2;2 43.4 1 35.2 1 60.0 26.000 0.1940 0 2.3 68 0 32 36 0 0 G/G 0 2;0 48.5 1 36.3 1 60.0 67.000 1.0000 0 1.2 2 2.000 1 GGTAGGGCGCTGTGGGTGGG CCGGCAGATCCTCAGCAGGT 20:62354865-62374864 StrongSomatic SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62369895 62369895 A G 70 70 0 0 31 39 G/G 1.0000 0;2 34.1 1 37.0 1 60.0 140.000 1.0000 0.0714 1.4 68 68 0 0 33 35 G/G 1.0000 0;2 47.7 1 36.6 1 60.0 136.000 1.0000 0.0294 1.2 0 1.000 1 GCTGTGGGTGGGGCCGGCAG TCCTCAGCAGGTTGGATGGT 20:62354865-62374864 Germline SNV 0 0 0 0 threeIndels_zero_deletion_tumor testbed 20 62370349 62370349 T C 71 71 0 0 34 37 C/C 1.0000 0;2 37.8 1 37.0 1 60.0 142.000 1.0000 0.0141 1.2 71 71 0 0 33 38 C/C 1.0000 0;2 37.5 1 36.8 1 60.0 142.000 1.0000 0.0423 1.3 0 1.000 1 CCAGTCCCAGGTCCCCGGGC GCCAGCCCGTGAGGTCCGTG 20:62354865-62374864 Germline SNV 0 0 0 0 diff --git a/testdata/integrationtestcases/Somatic;hg19.fa;ArgumentNA_Tumor.bam-ArgumentNA_Normal.bam;chr7;140453010-140453158;-q25-F0x100-f0.001-k1-M20-p;.txt b/testdata/integrationtestcases/Somatic;hg19.fa;ArgumentNA_Tumor.bam-ArgumentNA_Normal.bam;chr7;140453010-140453158;-q25-F0x100-f0.001-k1-M20-p;.txt index 521bf53..3a5761a 100644 --- a/testdata/integrationtestcases/Somatic;hg19.fa;ArgumentNA_Tumor.bam-ArgumentNA_Normal.bam;chr7;140453010-140453158;-q25-F0x100-f0.001-k1-M20-p;.txt +++ b/testdata/integrationtestcases/Somatic;hg19.fa;ArgumentNA_Tumor.bam-ArgumentNA_Normal.bam;chr7;140453010-140453158;-q25-F0x100-f0.001-k1-M20-p;.txt @@ -23,7 +23,7 @@ ArgumentNA_Tumor testbed chr7 140453041 140453041 A G 6690 1 6453 229 1 0 A/G 0. ArgumentNA_Tumor testbed chr7 140453044 140453044 T C 6690 1 6459 229 1 0 T/C 0.0001 1;0 26.0 0 10.0 0 60.0 0 0 0 3.0 2102 1 2021 78 1 0 T/C 0.0005 1;0 26.0 0 40.0 0 60.0 2.000 0.0005 0 1.0 0 2.000 1 GCATCTCAGGGCCAAAAATT AATCAGTGGAAAAATAGCCT chr7:140453011-140453158 LikelyLOH SNV 0 0 0 0 ArgumentNA_Tumor testbed chr7 140453046 140453046 A G 6690 3 6456 227 2 1 A/G 0.0004 1;2 20.7 1 40.0 1 56.0 6.000 0.0005 0 1.0 2102 2 2020 78 2 0 A/G 0.0010 1;0 34.5 1 35.0 1 60.0 4.000 0.0010 0 1.5 0 1.000 1 ATCTCAGGGCCAAAAATTTA TCAGTGGAAAAATAGCCTCA chr7:140453011-140453158 LikelySomatic SNV 0 0 0 0 ArgumentNA_Tumor testbed chr7 140453049 140453049 A T 6690 2 6451 228 1 1 A/T 0.0003 1;2 19.0 0 40.5 1 60.0 4.000 0.0003 0 1.0 2102 0 2022 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.000 1 TCAGGGCCAAAAATTTAATC GTGGAAAAATAGCCTCAATT chr7:140453011-140453158 StrongSomatic SNV 0 0 0 0 -ArgumentNA_Tumor testbed chr7 140453053 140453053 G GA 6690 1 6196 220 1 0 G/+1 0.0001 1;0 44.7 0 40.5 0 62.4 2.000 0.0002 0 0 2101 0 2022 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 6.000 1 GGCCAAAAATTTAATCAGTG AAAAATAGCCTCAATTCTTA chr7:140453011-140453158 StrongSomatic Insertion 0 0 0 0 +ArgumentNA_Tumor testbed chr7 140453053 140453053 G GA 6690 1 6196 220 1 0 G/+1 0.0001 1;0 43.0 0 39.0 0 60.0 2.000 0.0002 0 0 2101 0 2022 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 6.000 1 GGCCAAAAATTTAATCAGTG AAAAATAGCCTCAATTCTTA chr7:140453011-140453158 StrongSomatic Insertion 0 0 0 0 ArgumentNA_Tumor testbed chr7 140453060 140453060 A G 6689 3 6456 228 3 0 A/G 0.0004 1;0 46.7 1 39.0 1 60.0 6.000 0.0005 0 1.3 2100 0 2017 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1.000 1 AATTTAATCAGTGGAAAAAT GCCTCAATTCTTACCATCCA chr7:140453011-140453158 StrongSomatic SNV 0 0 0 0 ArgumentNA_Tumor testbed chr7 140453060 140453060 A T 6689 1 6456 228 1 0 A/T 0.0001 1;0 48.0 0 38.0 0 60.0 2.000 0.0002 0 1.0 2100 3 2017 76 3 0 A/T 0.0014 1;0 38.0 1 16.0 0 60.0 0 0 0 7.0 1 1.000 1 AATTTAATCAGTGGAAAAAT GCCTCAATTCTTACCATCCA chr7:140453011-140453158 LikelySomatic SNV 0 0 0 0 ArgumentNA_Tumor testbed chr7 140453061 140453061 G T 6689 1 6453 229 1 0 G/T 0.0001 1;0 43.0 0 39.0 0 60.0 2.000 0.0002 0 1.0 2099 0 2018 76 0 0 G/T 0 1;0 47.0 0 16.0 0 60.0 0 0 0 4.0 0 2.000 1 ATTTAATCAGTGGAAAAATA CCTCAATTCTTACCATCCAC chr7:140453011-140453158 StrongSomatic SNV 0 0 0 0 diff --git a/testdata/integrationtestcases/Somatic;hg19.fa;HCC2218_BL_realigins.bam-HCC2218_C_realigins.bam;chrX;7811670-7811868;-f0.001;.txt b/testdata/integrationtestcases/Somatic;hg19.fa;HCC2218_BL_realigins.bam-HCC2218_C_realigins.bam;chrX;7811670-7811868;-f0.001;.txt index a10f5e5..20166d4 100644 --- a/testdata/integrationtestcases/Somatic;hg19.fa;HCC2218_BL_realigins.bam-HCC2218_C_realigins.bam;chrX;7811670-7811868;-f0.001;.txt +++ b/testdata/integrationtestcases/Somatic;hg19.fa;HCC2218_BL_realigins.bam-HCC2218_C_realigins.bam;chrX;7811670-7811868;-f0.001;.txt @@ -3,7 +3,7 @@ HCC2218_BL_realigins testbed chrX 7811731 7811732 AC A 135 2 55 78 1 1 C/-1 0.01 HCC2218_BL_realigins testbed chrX 7811735 7811735 A G 133 0 56 77 0 0 A/A 0 2;0 28.0 1 33.2 1 34.1 21.167 1.0000 0 1.5 211 2 98 111 1 1 A/G 0.0095 2;2 35.0 1 35.0 0 60.0 4.000 0.0097 0 2.0 1 1.000 1 GCCAGTGAGCGAGGGGACCC GCACGACCCCCTGAGTCAGG chrX:7811671-7811868 StrongLOH SNV 0 0 0 0 HCC2218_BL_realigins testbed chrX 7811737 7811737 C A 137 2 56 79 1 1 C/A 0.0146 2;2 36.5 1 35.0 0 60.0 4.000 0.0159 0 2.0 211 0 99 112 0 0 C/A 0 2;0 50.0 0 7.0 0 60.0 0 0 0 7.0 1 1.000 1 CAGTGAGCGAGGGGACCCAG ACGACCCCCTGAGTCAGGAG chrX:7811671-7811868 StrongSomatic SNV 0 0 0 0 HCC2218_BL_realigins testbed chrX 7811747 7811747 T C 125 122 0 2 47 75 T/C 0.9760 0;2 30.0 1 35.8 1 39.4 29.500 0.9833 0.0160 1.8 202 192 3 3 84 108 T/C 0.9505 2;2 30.3 1 35.8 1 36.9 26.429 0.9585 0.0198 1.6 0 1.000 1 GGGGACCCAGCACGACCCCC GAGTCAGGAGGCCGAGCTGG chrX:7811671-7811868 Germline SNV 0 0 0 0 -HCC2218_BL_realigins testbed chrX 7811764 7811764 C CTGGAGGAACCAGAGGTGGAAGAACCACTGAGTCAGGAGAGCCAGG 131 0 49 81 0 0 C/C 0 2;0 26.4 1 35.6 1 42.0 20.667 1.0000 0 1.6 209 8 72 109 2 6 C/+45 0.0383 2;2 33.6 1 35.9 1 0 16.000 0.0440 0.0383 0.6 11 2.000 1 CCCTGAGTCAGGAGGCCGAG TGGAGGAACCACTGAGTCAG chrX:7811671-7811868 StrongLOH Insertion 0 0 0 0 +HCC2218_BL_realigins testbed chrX 7811764 7811764 C CTGGAGGAACCAGAGGTGGAAGAACCACTGAGTCAGGAGAGCCAGG 131 0 49 81 0 0 C/C 0 2;0 26.4 1 35.6 1 42.0 20.667 1.0000 0 1.6 209 8 72 109 2 6 C/+45 0.0383 2;2 30.5 1 32.6 1 0 16.000 0.0440 0.0383 0.6 11 2.000 1 CCCTGAGTCAGGAGGCCGAG TGGAGGAACCACTGAGTCAG chrX:7811671-7811868 StrongLOH Insertion 0 0 0 0 HCC2218_BL_realigins testbed chrX 7811810 7811813 GTCA CTGTGT 135 6 50 78 3 3 AGTCA/+7 0.0444 2;2 15.7 1 36.2 1 42.5 12.000 0.0465 0 4.3 176 7 77 92 2 5 AGTCA/+7 0.0398 2;2 15.7 1 37.8 1 42.9 14.000 0.0405 0 4.1 0 0 0 CGAGGTGGAAGAACCACTGA GGAGAGCCAGGTGGAGGAAC chrX:7811671-7811868 LikelySomatic Complex 0 0 0 0 HCC2218_BL_realigins testbed chrX 7811817 7811818 GA TG 110 7 43 48 3 4 GA/TG 0.0636 2;2 5.7 1 35.1 1 45.0 14.000 0.0729 0.0091 5.4 142 7 75 46 2 5 GA/TG 0.0493 2;2 5.7 1 37.6 1 42.9 14.000 0.0556 0 5.1 1 2.000 2 GAAGAACCACTGAGTCAGGA GCCAGGTGGAGGAACCACTG chrX:7811671-7811868 LikelySomatic Complex 0 0 0 0 HCC2218_BL_realigins testbed chrX 7811821 7811821 C G 109 0 44 52 0 0 C/C 0 2;0 26.3 1 33.9 1 3.3 8.600 1.0000 0 1.2 138 3 73 47 2 1 C/G 0.0217 2;2 13.3 1 30.7 1 0 2.000 0.0168 0 1.7 1 1.000 1 AACCACTGAGTCAGGAGAGC AGGTGGAGGAACCACTGAGT chrX:7811671-7811868 StrongLOH SNV 0 0 0 0 diff --git a/testdata/integrationtestcases/Somatic;hg1k.fa;TumorA.StrongLOH.bam-NormalA.StrongLOH.bam;chr21;10996701-11186054;-Q10-f0.01-r2-V0.05;.txt b/testdata/integrationtestcases/Somatic;hg1k.fa;TumorA.StrongLOH.bam-NormalA.StrongLOH.bam;chr21;10996701-11186054;-Q10-f0.01-r2-V0.05;.txt index 9ecede5..55ded73 100644 --- a/testdata/integrationtestcases/Somatic;hg1k.fa;TumorA.StrongLOH.bam-NormalA.StrongLOH.bam;chr21;10996701-11186054;-Q10-f0.01-r2-V0.05;.txt +++ b/testdata/integrationtestcases/Somatic;hg1k.fa;TumorA.StrongLOH.bam-NormalA.StrongLOH.bam;chr21;10996701-11186054;-Q10-f0.01-r2-V0.05;.txt @@ -3,7 +3,7 @@ TumorA.StrongLOH.chr21 testbed 21 11023618 11023618 T C 2 2 0 0 1 1 C/C 1.0000 0 TumorA.StrongLOH.chr21 testbed 21 11026644 11026644 C CATAAG 2 2 0 0 1 1 +5/+5 1.0000 0;2 57.5 1 30.0 0 50.0 4.000 1.0000 0 0.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1.000 1 TTTGACCTATTTATATGACT ATCAAAATAACTTGCTATGA 21:10996702-11186054 SampleSpecific Insertion 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11027188 11027188 G C 2 2 0 0 1 1 C/C 1.0000 0;2 16.5 1 30.0 0 60.0 4.000 1.0000 0 1.0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.000 1 AACAAATTGTATTCAATATA AGTAAGGATAAGGAAAAACT 21:10996702-11186054 SampleSpecific SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11031907 11031907 T C 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 1 C/C 1.0000 0;2 26.0 1 30.0 0 53.5 4.000 1.0000 0 1.5 0 1.000 1 CCCAGTGCTTTTCTCCAACT ATCTTGTGGCACTTGTCTCC 21:10996702-11186054 Deletion SNV 0 0 0 0 -TumorA.StrongLOH.chr21 testbed 21 11033264 11033264 T TA 3 3 0 0 2 1 +1/+1 1.0000 0;2 43.7 1 31.0 0 54.1 6.000 1.0000 0 1.7 1 1 0 0 0 1 +1/+1 1.0000 0;0 46.5 0 31.0 0 62.0 2.000 1.0000 0 0 6 7.000 1 AAAAAGTTACTAAAAATTAC AAAAAATCTATATAATGCCT 21:10996702-11186054 LikelySomatic Insertion 0 0 0 0 +TumorA.StrongLOH.chr21 testbed 21 11033264 11033264 T TA 3 3 0 0 2 1 +1/+1 1.0000 0;2 42.3 1 30.0 0 52.3 6.000 1.0000 0 1.7 1 1 0 0 0 1 +1/+1 1.0000 0;0 45.0 0 30.0 0 60.0 2.000 1.0000 0 0 6 7.000 1 AAAAAGTTACTAAAAATTAC AAAAAATCTATATAATGCCT 21:10996702-11186054 LikelySomatic Insertion 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11033419 11033419 T C 2 2 0 0 0 2 C/C 1.0000 0;0 27.5 1 30.0 0 58.5 4.000 1.0000 0 5.0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2.000 1 GCAGGGACTGAATTTGAACC AAGAAAAATAATTTAACCCA 21:10996702-11186054 SampleSpecific SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11033516 11033516 A G 4 1 1 2 1 0 A/G 0.2500 2;0 4.0 0 30.0 0 49.0 2.000 0.2500 0 3.0 2 2 0 0 1 1 G/G 1.0000 0;2 32.5 1 30.0 0 47.0 4.000 1.0000 0 2.5 0 2.000 1 TAAACTGTCCAAGCTAGTAA TTATACAAGGACTGTGGGAT 21:10996702-11186054 Germline SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11033518 11033518 T C 4 2 2 0 0 2 T/C 0.5000 0;0 24.0 1 30.0 0 58.5 4.000 0.5000 0 5.0 2 0 1 1 0 0 T/T 0 2;0 34.5 1 30.0 0 47.0 4.000 1.0000 0 2.5 1 2.000 2 AACTGTCCAAGCTAGTAAAT ATACAAGGACTGTGGGATGG 21:10996702-11186054 StrongSomatic SNV 0 0 0 0 @@ -24,12 +24,12 @@ TumorA.StrongLOH.chr21 testbed 21 11040156 11040157 CT C 3 2 1 0 1 1 T/-1 0.6667 TumorA.StrongLOH.chr21 testbed 21 11043026 11043030 GTTGC TCTGT 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 1 TCTGTTTGC/TCTGT 1.0000 0;2 15.0 1 30.0 0 60.0 4.000 1.0000 0 4.5 0 4.000 3 GCAGTAAGTTTGTTGTTGTT TGTTGTTGCTGTTGTTGTTG 21:10996702-11186054 Deletion Complex 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11043039 11043039 C T 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 1 T/T 1.0000 0;2 15.0 1 30.0 0 60.0 4.000 1.0000 0 4.5 2 1.000 1 TGTTGTTGTTGCTGTTGTTG TGTTGTTGTTGCTGTTTTTT 21:10996702-11186054 Deletion SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11043508 11043508 G A 2 2 0 0 2 0 A/A 1.0000 0;0 38.5 1 30.0 0 60.0 4.000 1.0000 0 1.0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2.000 2 ATGAGGGAAAGTGGAATAAT TGTGCTTCCAGTTGTGATAC 21:10996702-11186054 SampleSpecific SNV 0 0 0 0 -TumorA.StrongLOH.chr21 testbed 21 11043637 11043637 G GA 4 2 1 1 0 2 G/+1 0.5000 2;0 51.5 1 31.2 0 62.4 4.000 0.6667 0 1.0 1 0 1 0 0 0 G/G 0 0;0 48.0 0 30.0 0 60.0 2.000 1.0000 0 0 7 8.000 1 GAAATTTCTGTTTGAAAAAA AAAAAAACAAGTATATCGAG 21:10996702-11186054 StrongSomatic Insertion 0 0 0 0 +TumorA.StrongLOH.chr21 testbed 21 11043637 11043637 G GA 4 2 1 1 0 2 G/+1 0.5000 2;0 49.5 1 30.0 0 60.0 4.000 0.6667 0 1.0 1 0 1 0 0 0 G/G 0 0;0 48.0 0 30.0 0 60.0 2.000 1.0000 0 0 7 8.000 1 GAAATTTCTGTTTGAAAAAA AAAAAAACAAGTATATCGAG 21:10996702-11186054 StrongSomatic Insertion 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11043655 11043658 GAGA G 4 1 1 2 0 1 A/-3 0.2500 2;0 33.0 0 30.0 0 60.0 2.000 0.2500 0 0 2 2 0 0 1 1 -3/-3 1.0000 0;2 17.0 1 28.3 1 59.0 4.000 1.0000 0.5000 2.0 4 2.000 1 AAGAAAAAAACAAGTATATC AGAACTCTATTCTTCAAAAA 21:10996702-11186054 Germline Deletion 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11044157 11044157 G A 3 3 0 0 2 1 A/A 1.0000 0;2 22.7 1 30.0 0 60.0 6.000 1.0000 0 3.7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.000 1 CAGACATTCTTGAGATAAAA TAGGAAAAAGAAACCTATCT 21:10996702-11186054 SampleSpecific SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11044315 11044315 A G 3 3 0 0 1 2 G/G 1.0000 0;2 40.0 1 30.0 0 60.0 6.000 1.0000 0 4.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1.000 1 CTCCAGCCTTCACTACAGTG TGTTCGCACACAGTAAACAC 21:10996702-11186054 SampleSpecific SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11044404 11044404 C A 4 2 1 1 1 1 C/A 0.5000 2;2 30.0 1 30.0 0 60.0 4.000 0.5000 0 3.0 2 1 1 0 1 0 C/A 0.5000 0;0 61.0 0 30.0 0 60.0 2.000 0.5000 0 2.0 0 2.000 1 GAGAGAACTACAGAAGAATT AACAGCAGAGAAAGATGATC 21:10996702-11186054 LikelySomatic SNV 0 0 0 0 -TumorA.StrongLOH.chr21 testbed 21 11045512 11045512 T TAGAAAGAAA 3 3 0 0 3 0 +9/+9 1.0000 0;0 52.4 1 30.8 0 54.8 6.000 1.0000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 4.000 1 GAAGTAAAAGAAGAGAAAAA AGAAAAATTTTGCCTCAAAA 21:10996702-11186054 SampleSpecific Insertion 0 0 0 0 +TumorA.StrongLOH.chr21 testbed 21 11045512 11045512 T TAGAAAGAAA 3 3 0 0 3 0 +9/+9 1.0000 0;0 51.0 1 30.0 0 53.3 6.000 1.0000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 4.000 1 GAAGTAAAAGAAGAGAAAAA AGAAAAATTTTGCCTCAAAA 21:10996702-11186054 SampleSpecific Insertion 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11045818 11045818 G A 2 2 0 0 0 2 A/A 1.0000 0;0 43.0 1 30.0 0 60.0 4.000 1.0000 0 1.0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.000 1 TTGCTAAATAACAGCCACAA TTATTTGTTTAAAAATATGA 21:10996702-11186054 SampleSpecific SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11045987 11045987 C T 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 1 T/T 1.0000 0;2 13.0 1 30.0 0 60.0 4.000 1.0000 0 1.5 4 1.000 1 CAATACTTCAAGTATCAAAA ATTTATTTTAAGAAACCTAC 21:10996702-11186054 Deletion SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11046518 11046519 CC GG 2 2 0 0 1 1 GGC/GG 1.0000 0;2 55.0 1 30.0 0 60.0 4.000 1.0000 0 3.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2.000 1 CTAGTAGAACTTGCTGAAGA ACAACAGAACCTGGTAATAC 21:10996702-11186054 SampleSpecific Complex 0 0 0 0 @@ -99,14 +99,14 @@ TumorA.StrongLOH.chr21 testbed 21 11062427 11062429 ATG A 2 0 1 1 0 0 T/T 0 2;0 TumorA.StrongLOH.chr21 testbed 21 11062499 11062499 T C 3 3 0 0 1 2 C/C 1.0000 0;2 29.3 1 26.7 1 53.3 2.000 1.0000 0 1.7 2 2 0 0 1 1 C/C 1.0000 0;2 29.0 1 30.0 0 60.0 4.000 1.0000 0 4.5 1 1.000 1 ATTTGTCCCCGCCAAAATTT ATGTTGAAATGTAATCCCCG 21:10996702-11186054 Germline SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11062668 11062668 G C 3 2 1 0 1 1 G/C 0.6667 0;2 38.5 1 30.0 0 60.0 4.000 0.6667 0 3.0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.000 1 CACCCATCTCCTCTGCTCCT TTCTTGCTATGTGAGATGCC 21:10996702-11186054 SampleSpecific SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11062711 11062711 G A 3 3 0 0 2 1 A/A 1.0000 0;2 49.3 1 30.0 0 60.0 6.000 1.0000 0 4.0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.000 1 CTCCCCTTTCTCCTTCCACC TTATTTCAAACTTTTTTTTT 21:10996702-11186054 SampleSpecific SNV 0 0 0 0 -TumorA.StrongLOH.chr21 testbed 21 11062743 11062743 C CTAT 3 2 0 0 2 0 +3/+3 0.6667 0;0 26.0 1 30.6 0 61.2 4.000 1.0000 0 4.6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 2.000 1 TTTTTTTTTAAATTTATTAT TATTTTTTTTTTTGAGACAG 21:10996702-11186054 SampleSpecific Insertion 0 0 0 0 +TumorA.StrongLOH.chr21 testbed 21 11062743 11062743 C CTAT 3 2 0 0 2 0 +3/+3 0.6667 0;0 25.5 1 30.0 0 60.0 4.000 1.0000 0 4.6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 2.000 1 TTTTTTTTTAAATTTATTAT TATTTTTTTTTTTGAGACAG 21:10996702-11186054 SampleSpecific Insertion 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11062750 11062750 T C 2 2 0 0 2 0 C/C 1.0000 0;0 25.5 1 30.0 0 60.0 4.000 1.0000 0 4.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11.000 1 TTAAATTTATTATCTATTTT TTTTTTGAGACAGAGTTTCA 21:10996702-11186054 SampleSpecific SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11062846 11062846 C A 2 2 0 0 1 1 A/A 1.0000 0;2 25.0 1 30.0 0 50.0 4.000 1.0000 0 4.0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.000 1 CCCCCCAGGTTCAAGCGATT TCCTGCCTCAGTCTCCTGAG 21:10996702-11186054 SampleSpecific SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11062871 11062871 A T 3 3 0 0 1 2 T/T 1.0000 0;2 23.7 1 30.0 0 46.7 6.000 1.0000 0 4.0 1 1 0 0 1 0 T/T 1.0000 0;0 25.0 0 30.0 0 40.0 2.000 1.0000 0 4.0 0 3.000 1 GCCTCAGTCTCCTGAGTAGC GGGATTACAGGCACCTGTCA 21:10996702-11186054 LikelySomatic SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11062889 11062889 T C 2 2 0 0 0 2 C/C 1.0000 0;0 50.0 1 30.0 0 40.0 4.000 1.0000 0 4.5 1 1 0 0 1 0 C/C 1.0000 0;0 43.0 0 30.0 0 40.0 2.000 1.0000 0 4.0 0 1.000 1 GCAGGGATTACAGGCACCTG CACCGCAACCGGCTAAATGA 21:10996702-11186054 LikelySomatic SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11062897 11062899 ACC CCT 2 2 0 0 0 2 CCTCC/CCT 1.0000 0;0 60.0 1 30.0 0 40.0 4.000 1.0000 0 4.5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.000 1 TACAGGCACCTGTCACCGCA GGCTAAATGATTTCAAACTT 21:10996702-11186054 StrongSomatic Complex 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11063051 11063051 G A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 1 A/A 1.0000 0;2 33.5 1 30.0 0 50.0 4.000 1.0000 0 4.0 0 2.000 1 CTTTACAGCAACACAGGAGC GCTGTATATATATATATATA 21:10996702-11186054 Deletion SNV 0 0 0 0 -TumorA.StrongLOH.chr21 testbed 21 11063230 11063230 G GATA 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 2 0 2 1 1 G/+3 0.5000 0;2 10.8 1 30.8 1 51.3 4.000 0.5000 0.2500 1.5 5 2.000 1 AAAGCAGTGAACAAGTCAAA ATAATTTATAATAACGTAAG 21:10996702-11186054 Deletion Insertion 0 0 0 0 +TumorA.StrongLOH.chr21 testbed 21 11063230 11063230 G GATA 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 2 0 2 1 1 G/+3 0.5000 0;2 10.5 1 30.0 1 50.0 4.000 0.5000 0.2500 1.5 5 2.000 1 AAAGCAGTGAACAAGTCAAA ATAATTTATAATAACGTAAG 21:10996702-11186054 Deletion Insertion 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11063246 11063246 G A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 1 A/A 1.0000 0;2 50.0 1 30.0 0 50.0 4.000 1.0000 0 1.0 0 1.000 1 CAAAGATAATTTATAATAAC TAAGTTTTATGTTGCAGTGT 21:10996702-11186054 Deletion SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11063292 11063292 T TAA 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 1 +2/+2 1.0000 0;2 53.0 1 30.0 0 50.0 4.000 1.0000 0 1.0 1 3.000 1 CCAAAAGAAGCCATAGTCAT AGTTTATACACCTAATAAAT 21:10996702-11186054 Deletion Insertion 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11063806 11063807 GA G 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 1 -1/-1 1.0000 0;2 57.5 1 30.0 0 57.0 4.000 1.0000 0 3.0 6 7.000 1 GGCAAATGTGGTATTCAGAG AAAAAATATAGCTTCAAACA 21:10996702-11186054 Deletion Deletion 0 0 0 0 @@ -143,7 +143,7 @@ TumorA.StrongLOH.chr21 testbed 21 11069200 11069200 T C 3 3 0 0 1 2 C/C 1.0000 0 TumorA.StrongLOH.chr21 testbed 21 11069287 11069287 A G 2 2 0 0 1 1 G/G 1.0000 0;2 31.5 1 30.0 0 60.0 4.000 1.0000 0 4.0 1 0 0 1 0 0 A/A 0 0;0 74.0 0 30.0 0 60.0 2.000 1.0000 0 3.0 0 2.000 3 AAAAAAAAGACATAAAAAGA GCTCAATCTAATTAATCATC 21:10996702-11186054 StrongSomatic SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11071049 11071049 A AG 1 0 0 1 0 0 A/A 0 0;0 68.0 0 30.0 0 60.0 2.000 1.0000 0 3.0 2 2 0 0 1 1 +1/+1 1.0000 0;2 59.0 1 30.0 0 42.0 4.000 1.0000 0 4.5 3 4.000 1 CATCCCAGAACTCTATATTC GGGAAAAAAAGACAAAAATG 21:10996702-11186054 StrongLOH Insertion 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11071391 11071391 A C 2 2 0 0 1 1 C/C 1.0000 0;2 28.5 1 30.0 0 60.0 4.000 1.0000 0 3.0 3 0 3 0 0 0 A/A 0 0;0 34.3 1 26.7 1 54.3 2.000 1.0000 0 2.0 0 2.000 1 CAAAAAAGCAGGGAAGCGGC GGCTACCAAGAAAAAAAAAC 21:10996702-11186054 StrongSomatic SNV 0 0 0 0 -TumorA.StrongLOH.chr21 testbed 21 11071401 11071401 G GAAAAA 2 2 0 0 1 1 +5/+5 1.0000 0;2 30.0 1 31.6 0 63.2 4.000 1.0000 0 3.2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 14.000 1 GGGAAGCGGCAGGCTACCAA AAAAAAAAACTCACAGACAA 21:10996702-11186054 StrongSomatic Insertion 0 0 0 0 +TumorA.StrongLOH.chr21 testbed 21 11071401 11071401 G GAAAAA 2 2 0 0 1 1 +5/+5 1.0000 0;2 28.5 1 30.0 0 60.0 4.000 1.0000 0 3.2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 14.000 1 GGGAAGCGGCAGGCTACCAA AAAAAAAAACTCACAGACAA 21:10996702-11186054 StrongSomatic Insertion 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11072367 11072367 G C 2 2 0 0 2 0 C/C 1.0000 0;0 33.5 1 30.0 0 44.5 4.000 1.0000 0 4.5 1 0 1 0 0 0 G/G 0 0;0 70.0 0 30.0 0 60.0 2.000 1.0000 0 2.0 0 2.000 1 TACTAAAAATACAAAAATTA CCAGGCATGGTGGTTCACGC 21:10996702-11186054 StrongSomatic SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11072388 11072388 C CT 2 2 0 0 2 0 +1/+1 1.0000 0;0 53.0 1 30.0 0 44.5 4.000 1.0000 0 4.5 1 0 1 0 0 0 C/C 0 0;0 58.0 0 30.0 0 60.0 2.000 1.0000 0 2.0 0 2.000 1 CCAGGCATGGTGGTTCACGC GTGATTCCAGCTACTTGGGA 21:10996702-11186054 StrongSomatic Insertion 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11073549 11073549 C T 2 2 0 0 2 0 T/T 1.0000 0;0 55.5 1 30.0 0 43.0 4.000 1.0000 0 5.0 1 1 0 0 1 0 T/T 1.0000 0;0 67.0 0 30.0 0 40.0 2.000 1.0000 0 4.0 0 1.000 1 ATGATAAAAAGAAGGATTCT AGAACATCCTGAAGGAAGAA 21:10996702-11186054 LikelySomatic SNV 0 0 0 0 @@ -203,7 +203,7 @@ TumorA.StrongLOH.chr21 testbed 21 11085166 11085166 T C 2 2 0 0 0 2 C/C 1.0000 0 TumorA.StrongLOH.chr21 testbed 21 11087580 11087580 C A 1 0 0 1 0 0 C/C 0 0;0 35.0 0 30.0 0 15.0 2.000 1.0000 0 5.0 3 2 1 0 1 1 C/A 0.6667 0;2 41.5 1 30.0 0 60.0 4.000 1.0000 0 1.5 0 3.000 1 GGCAAAAGTGAAAGATGCCT TTTACTACTCTCAGGCCTTG 21:10996702-11186054 StrongLOH SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11088403 11088403 T A 4 2 1 1 1 1 T/A 0.5000 2;2 45.5 1 30.0 0 60.0 4.000 0.5000 0 3.0 1 0 0 1 0 0 T/T 0 0;0 52.0 0 30.0 0 60.0 2.000 1.0000 0 0 1 1.000 1 CATTAATCATGATATACCTA GAAAAGATGTATAACATATA 21:10996702-11186054 StrongSomatic SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11088725 11088725 C T 1 1 0 0 0 1 T/T 1.0000 0;0 40.0 0 30.0 0 60.0 2.000 1.0000 0 2.0 2 2 0 0 1 1 T/T 1.0000 0;2 15.0 1 30.0 1 60.0 4.000 1.0000 0.5000 4.0 1 1.000 1 GTCTCGATCTCCTGATCTCA GATCCACCCGCCTCGGCCTC 21:10996702-11186054 Germline SNV 0 0 0 0 -TumorA.StrongLOH.chr21 testbed 21 11088890 11088890 C CA 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 1 +1/+1 1.0000 0;2 17.7 1 31.2 1 51.5 4.000 1.0000 0.5000 1.6 7 8.000 1 AAAACATCTGGAAAAATATA AAAAAAAGTTTCCAGTGATA 21:10996702-11186054 Deletion Insertion 0 0 0 0 +TumorA.StrongLOH.chr21 testbed 21 11088890 11088890 C CA 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 1 +1/+1 1.0000 0;2 17.0 1 30.0 1 49.5 4.000 1.0000 0.5000 1.6 7 8.000 1 AAAACATCTGGAAAAATATA AAAAAAAGTTTCCAGTGATA 21:10996702-11186054 Deletion Insertion 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11088974 11088974 G A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 1 1 A/A 1.0000 0;2 50.5 1 30.0 0 49.5 4.000 1.0000 0 1.5 0 2.000 1 TAGAATTTGAATTTATGAAA GCACATATACCTTTAGAATA 21:10996702-11186054 Deletion SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11090371 11090371 C T 2 2 0 0 2 0 T/T 1.0000 0;0 38.5 1 30.0 0 55.5 4.000 1.0000 0 4.0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.000 1 CAGTTTGTGGTATTTTGTTA GGTAACTCTAGCAAACTAAT 21:10996702-11186054 SampleSpecific SNV 0 0 0 0 TumorA.StrongLOH.chr21 testbed 21 11090400 11090400 A C 3 2 1 0 2 0 A/C 0.6667 0;0 43.5 1 30.0 0 55.5 4.000 0.6667 0 4.0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.000 1 TAGCAAACTAATAGGAGAGG CTCTGGTTTACACTATTTAA 21:10996702-11186054 SampleSpecific SNV 0 0 0 0