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Merged
TobiBu merged 17 commits into from
Nov 10, 2025
Merged

Update project metadata in pyproject.toml with description, authors, … #165

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27e3530
Update project metadata in pyproject.toml with description, authors, …
Nov 10, 2025
bb0fb55
Fix project URLs section formatting in pyproject.toml
Nov 10, 2025
4175375
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 10, 2025
e5987a7
Refactor URLs section in pyproject.toml from a dictionary to a list f…
Nov 10, 2025
532147d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 10, 2025
a7ad011
Refactor URLs section in pyproject.toml from list to dictionary format
Nov 10, 2025
d447ce2
Remove version declaration from project metadata in pyproject.toml
Nov 10, 2025
0ff2326
Update notebook metadata: change display name to 'rubix' and update P…
Nov 10, 2025
e5d291b
fix educational stepwise tutorial with visualisation
anschaible Nov 10, 2025
817900c
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 10, 2025
bc65c65
Fix ssp fsps notebook
anschaible Nov 10, 2025
0bf9909
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 10, 2025
789a7a7
sharded dust version
anschaible Nov 10, 2025
251fa11
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 10, 2025
8d9d38d
comment out notebook cells
anschaible Nov 10, 2025
741de75
fix pytests, now only the av value and not the extinction curve is re…
anschaible Nov 10, 2025
42b4b75
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 10, 2025
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50 changes: 28 additions & 22 deletions notebooks/dust_extinction.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"# NBVAL_SKIP\n",
"import os\n",
"# os.environ['SPS_HOME'] = '/home/annalena/sps_fsps'\n",
"# os.environ['SPS_HOME'] = '/Users/annalena/Documents/GitHub/fsps'"
"os.environ['SPS_HOME'] = '/Users/annalena/Documents/GitHub/fsps'"
]
},
{
Expand Down Expand Up @@ -272,17 +272,6 @@
"In order to comapre a dusty and non dusty IFU cube, we first run a normal RUBIX pipeline."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#import os\n",
"#os.environ[\"SPS_HOME\"] = '/Users/buck/Documents/Nexus/codes/fsps'\n",
"#ILLUSTRIS_API_KEY = 'c0112e1fa11489ef0e6164480643d1c8'"
]
},
{
"cell_type": "code",
"execution_count": null,
Expand Down Expand Up @@ -368,7 +357,8 @@
"#NBVAL_SKIP\n",
"pipe = RubixPipeline(config)\n",
"\n",
"rubixdata = pipe.run()"
"inputdata = pipe.prepare_data()\n",
"rubixdata = pipe.run_sharded(inputdata)"
]
},
{
Expand Down Expand Up @@ -472,7 +462,8 @@
"#NBVAL_SKIP\n",
"pipe = RubixPipeline(config)\n",
"\n",
"rubixdata_dust = pipe.run()"
"inputdata = pipe.prepare_data()\n",
"rubixdata_dust = pipe.run_sharded(inputdata)"
]
},
{
Expand All @@ -491,8 +482,8 @@
"#NBVAL_SKIP\n",
"wave = pipe.telescope.wave_seq\n",
"\n",
"spectra = rubixdata.stars.datacube # Spectra of all stars\n",
"dusty_spectra = rubixdata_dust.stars.datacube # Spectra of all stars\n",
"spectra = rubixdata # Spectra of all stars\n",
"dusty_spectra = rubixdata_dust # Spectra of all stars\n",
"print(spectra.shape)\n",
"print(dusty_spectra.shape)\n",
"\n",
Expand Down Expand Up @@ -536,7 +527,7 @@
"source": [
"# NBVAL_SKIP\n",
"wave = pipe.telescope.wave_seq\n",
"filters,images = curves.apply_filter_curves(rubixdata_dust.stars.datacube, wave).values()\n",
"filters,images = curves.apply_filter_curves(rubixdata_dust, wave).values()\n",
"\n",
"for i_dust,name in zip(images, filters):\n",
" plt.figure()\n",
Expand All @@ -559,8 +550,23 @@
"outputs": [],
"source": [
"# NBVAL_SKIP\n",
"idx = np.where(rubixdata.gas.mass[0] != 0)\n",
"gas_map = np.histogram2d(rubixdata.gas.coords[0,:,0][idx], rubixdata.gas.coords[0,:,1][idx], bins=(25,25), weights=np.squeeze(rubixdata.gas.mass)[idx])"
"# The input data are rotated in the same way as the particles are rotaterd to calculate the IFU. \n",
"# This step is necessary, because we only have the raw input data and the pipeline only returns the datacube and not the per particle information.\n",
"from rubix.core.rotation import get_galaxy_rotation\n",
"rotate = get_galaxy_rotation(config)\n",
"\n",
"inputdatadata = rotate(inputdata)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# NBVAL_SKIP\n",
"idx = np.where(inputdata.gas.mass != 0)\n",
"gas_map = np.histogram2d(inputdata.gas.coords[:,0][idx], inputdata.gas.coords[:,1][idx], bins=(25,25), weights=np.squeeze(inputdata.gas.mass)[idx])"
]
},
{
Expand Down Expand Up @@ -605,7 +611,7 @@
"source": [
"# NBVAL_SKIP\n",
"wave = pipe.telescope.wave_seq\n",
"filters,images = curves.apply_filter_curves(rubixdata.stars.datacube, wave).values()\n",
"filters,images = curves.apply_filter_curves(rubixdata, wave).values()\n",
"\n",
"for i,name in zip(images, filters):\n",
" plt.figure()\n",
Expand All @@ -624,7 +630,7 @@
],
"metadata": {
"kernelspec": {
"display_name": "rubix-test",
"display_name": "rubix",
"language": "python",
"name": "python3"
},
Expand All @@ -638,7 +644,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.13.0"
"version": "3.12.8"
}
},
"nbformat": 4,
Expand Down
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