From 069de58e6b3b6fd5afe302276bdca2d3f54ac5df Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 19 Jan 2026 18:51:28 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/kynan/nbstripout: 0.8.2 → 0.9.0](https://github.com/kynan/nbstripout/compare/0.8.2...0.9.0)
- [github.com/psf/black-pre-commit-mirror: 25.12.0 → 26.1.0](https://github.com/psf/black-pre-commit-mirror/compare/25.12.0...26.1.0)
---
 .pre-commit-config.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 82d3d70..b57adf6 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,7 +1,7 @@
 
 repos:
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.8.2
+    rev: 0.9.0
     hooks:
     - id: nbstripout
       files: ".ipynb"
@@ -14,7 +14,7 @@ repos:
     -   id: check-merge-conflict # Check for files that contain merge conflict strings.
     -   id: check-added-large-files # Prevent large files from being added to the repository.
   - repo: https://github.com/psf/black-pre-commit-mirror
-    rev: 25.12.0
+    rev: 26.1.0
     hooks:
     - id: black
   - repo: https://github.com/pycqa/isort

From 61d3ef40088df33de25596487e5b7d8a504ddcbb Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 19 Jan 2026 18:51:41 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 rubix/core/data.py          | 8 ++++----
 rubix/logger.py             | 6 ++----
 tests/test_illustris_api.py | 6 +++---
 3 files changed, 9 insertions(+), 11 deletions(-)

diff --git a/rubix/core/data.py b/rubix/core/data.py
index ebc55fe..3bdf41c 100644
--- a/rubix/core/data.py
+++ b/rubix/core/data.py
@@ -415,7 +415,7 @@ def prepare_input(config: Union[dict, str]) -> RubixData:
             >>> rubixdata.stars.coords
     """
 
-    logger_config = config["logger"] if "logger" in config else None  # type:ignore
+    logger_config = config["logger"] if "logger" in config else None  # type: ignore
     logger = get_logger(logger_config)
     file_path = config["output_path"]
     file_path = os.path.join(file_path, "rubix_galaxy.h5")
@@ -464,13 +464,13 @@ def prepare_input(config: Union[dict, str]) -> RubixData:
                 if rubixdata.stars.coords is not None:
                     indices = np.random.choice(
                         np.arange(len(rubixdata.stars.coords)),
-                        size=size,  # type:ignore
+                        size=size,  # type: ignore
                         replace=False,
-                    )  # type:ignore
+                    )  # type: ignore
                 elif rubixdata.gas.coords is not None:
                     indices = np.random.choice(
                         np.arange(len(rubixdata.gas.coords)),
-                        size=size,  # type:ignore
+                        size=size,  # type: ignore
                         replace=False,
                     )
                 else:
diff --git a/rubix/logger.py b/rubix/logger.py
index 6cb5d54..fefb64f 100644
--- a/rubix/logger.py
+++ b/rubix/logger.py
@@ -45,15 +45,13 @@ def get_logger(config=None):
 
     if first_time:
 
-        logger.info(
-            r"""
+        logger.info(r"""
    ___  __  _____  _____  __
   / _ \/ / / / _ )/  _/ |/_/
  / , _/ /_/ / _  |/ /_>  <
 /_/|_|\____/____/___/_/|_|
 
-"""
-        )
+""")
         logger.info(f"Rubix version: {version.__version__}")
         logger.info(f"JAX version: {jax.__version__}")
         logger.info(f"Running on {jax.devices()} devices")
diff --git a/tests/test_illustris_api.py b/tests/test_illustris_api.py
index e4b544a..cea4756 100644
--- a/tests/test_illustris_api.py
+++ b/tests/test_illustris_api.py
@@ -385,11 +385,11 @@ def test_append_subhalo_data(api_instance, tmp_path):
                 dataset = f["SubhaloData"][key]  # type: ignore
                 if isinstance(value, np.ndarray):
                     np.testing.assert_array_equal(
-                        dataset[:], value  # type:ignore
-                    ), f"Data '{key}' does not match the expected value."  # type:ignore
+                        dataset[:], value  # type: ignore
+                    ), f"Data '{key}' does not match the expected value."  # type: ignore
                 else:
                     assert (
-                        dataset[()] == value  # type:ignore
+                        dataset[()] == value  # type: ignore
                     ), f"Data '{key}' does not match the expected value."