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loop for encompass all 5 models, not treat 0 as special #16

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keiran-rowell-unsw opened this issue Oct 11, 2024 · 1 comment

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keiran-rowell-unsw commented Oct 11, 2024 •

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proteinfold/modules/local/run_alphafold2_pred.nf

Lines 56 to 59 in 8ce0598

    
               awk '{print \$6"\\t"\$11}' ranked_0.pdb | uniq > ranked_0_plddt.tsv 
        
               for i in 1 2 3 4 
        
                   do awk '{print \$6"\\t"\$11}' ranked_\$i.pdb | uniq | awk '{print \$2}' > ranked_"\$i"_plddt.tsv 
        
               done

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keiran-rowell-unsw assigned keiran-rowell-unsw and nbtm-sh

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keiran-rowell-unsw commented Oct 11, 2024

Nvm, it's the paste line just below, so you want model_0_plddt.tsv to contain the leading residue index and then paste will line them all up.

keiran-rowell-unsw closed this as not planned

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