From f005b63b8bb9e26988eec9340d6978386e6f2d15 Mon Sep 17 00:00:00 2001
From: BBQuercus <bastian@eichenbergers.ch>
Date: Tue, 8 Sep 2020 16:09:40 +0200
Subject: [PATCH 1/2] :paper: Add radius to CLI manpage

---
 README.rst       | 2 +-
 deepblink/cli.py | 3 ++-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/README.rst b/README.rst
index c260fdc..1832d51 100644
--- a/README.rst
+++ b/README.rst
@@ -70,6 +70,6 @@ Usage
 
 Inferencing on deepBlink is performed at the command line as follows: ::
 
-    deepblink [-h] [-o OUTPUT] [-t {csv,txt}] [-v] [-V] MODEL INPUT
+    deepblink [-h] [-o OUTPUT] [-t {csv,txt}] [-r RADIUS] [-v] [-V] MODEL INPUT
 
 More detailed information is availabe in our `documentation <https://deepblink.readthedocs.io/>`_.
diff --git a/deepblink/cli.py b/deepblink/cli.py
index f3bb6ba..b29c307 100644
--- a/deepblink/cli.py
+++ b/deepblink/cli.py
@@ -5,7 +5,7 @@
 run multiple images at once by passing a directory as input.
 
 Usage:
-    ``$ deepblink [-h] [-o OUTPUT] [-t {csv,txt}] [-v] [-V] MODEL INPUT``
+    ``$ deepblink [-h] [-o OUTPUT] [-t {csv,txt}] [-r RADIUS] [-v] [-V] MODEL INPUT``
     ``$ deepblink --help``
 
 Positional Arguments:
@@ -17,6 +17,7 @@
 
     -o, --output    output file/folder location [default: input location]
     -t, --type      output file type [options: csv, txt] [default: csv]
+    -r, --radius    if given, calculate the integrated intensity in the given radius around each coordinate
     -v, --verbose   set program output to verbose [default: quiet]
     -V, --version   show version program's version number and exit
 

From 542a630202cf9c9c4370895ff54d99c8ede5e1aa Mon Sep 17 00:00:00 2001
From: BBQuercus <bastian@eichenbergers.ch>
Date: Tue, 8 Sep 2020 16:10:43 +0200
Subject: [PATCH 2/2] :gem: Bumpversion to release 0.0.6

---
 .bumpversion.cfg      | 2 +-
 deepblink/__init__.py | 2 +-
 deepblink/cli.py      | 2 +-
 docs/conf.py          | 2 +-
 setup.py              | 2 +-
 5 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/.bumpversion.cfg b/.bumpversion.cfg
index f2193a9..8d5b43f 100644
--- a/.bumpversion.cfg
+++ b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.0.5
+current_version = 0.0.6
 commit = False
 tag = True
 
diff --git a/deepblink/__init__.py b/deepblink/__init__.py
index 6ccd4fb..89923be 100644
--- a/deepblink/__init__.py
+++ b/deepblink/__init__.py
@@ -15,7 +15,7 @@
 - util: Basic utility functions not fitting into a category.
 """
 
-__version__ = "0.0.5"
+__version__ = "0.0.6"
 
 from . import augment
 from . import cli
diff --git a/deepblink/cli.py b/deepblink/cli.py
index b29c307..880d731 100644
--- a/deepblink/cli.py
+++ b/deepblink/cli.py
@@ -134,7 +134,7 @@ def _parse_args():
         action="store_true",
         help="set program output to verbose [default: quiet]",
     )
-    parser.add_argument("-V", "--version", action="version", version="%(prog)s 0.0.5")
+    parser.add_argument("-V", "--version", action="version", version="%(prog)s 0.0.6")
     args = parser.parse_args()
 
     return args
diff --git a/docs/conf.py b/docs/conf.py
index 05b7130..b4e7cfe 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -36,7 +36,7 @@
 year = "2020"
 author = "Bastian Eichenberger"
 copyright = f"{year}, {author}"
-version = release = "0.0.5"
+version = release = "0.0.6"
 
 pygments_style = "trac"
 templates_path = ["."]
diff --git a/setup.py b/setup.py
index d2bf169..9136e80 100755
--- a/setup.py
+++ b/setup.py
@@ -7,7 +7,7 @@
 setup(
     # Description
     name="deepblink",
-    version="0.0.5",
+    version="0.0.6",
     license="MIT",
     description="Threshold independent detection and localization of diffraction-limited spots.",
     long_description_content_type="text/plain",