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@BCCDC-PHL

BC Centre for Disease Control Public Health Laboratory

The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.

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  1. ncov2019-artic-nf ncov2019-artic-nf Public

    Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow 3 1

  2. illumina-uploader illumina-uploader Public

    Watch for new files in Illumina sequencer and upload to remote server

    Python 3 1

  3. mpxv-artic-nf mpxv-artic-nf Public

    Python 2 1

  4. covid-qc covid-qc Public

    Static site for displaying COVID-19 sequencing quality control data

    Clojure 4

Repositories

Showing 10 of 120 repositories
  • norovirus-blast-nf Public

    nextflow wrapper for noroblast

    BCCDC-PHL/norovirus-blast-nf’s past year of commit activity
    Python 0 0 0 0 Updated Sep 23, 2024
  • basic-sequence-qc Public

    Generate some basic quality control statistics on an arbitrary set of illumina fastq sequence files.

    BCCDC-PHL/basic-sequence-qc’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Sep 16, 2024
  • tbprofiler-nf Public

    Nextflow Wrapper for TBProfiler

    BCCDC-PHL/tbprofiler-nf’s past year of commit activity
    Python 4 2 3 1 Updated Sep 12, 2024
  • amplicon-consensus Public
    BCCDC-PHL/amplicon-consensus’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Sep 12, 2024
  • fluviewer-nf Public

    Nextflow pipeline for influenza A whole genome sequence analysis

    BCCDC-PHL/fluviewer-nf’s past year of commit activity
    Nextflow 0 0 5 3 Updated Sep 11, 2024
  • alignment-variants Public

    Pipeline to perform alignment & variant calling on whole-genome sequence data

    BCCDC-PHL/alignment-variants’s past year of commit activity
    Python 0 0 0 0 Updated Sep 9, 2024
  • mpxv-artic-nf Public
    BCCDC-PHL/mpxv-artic-nf’s past year of commit activity
    Python 2 1 1 0 Updated Sep 3, 2024
  • artic-mpxv2022 Public
    BCCDC-PHL/artic-mpxv2022’s past year of commit activity
    0 0 0 0 Updated Aug 30, 2024
  • auto-ncov Public

    Automated genomic analysis of SARS-CoV-2 sequence data

    BCCDC-PHL/auto-ncov’s past year of commit activity
    Python 1 0 3 0 Updated Aug 30, 2024
  • auspice-docker Public
    BCCDC-PHL/auspice-docker’s past year of commit activity
    Shell 0 0 0 0 Updated Aug 26, 2024
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