norovirus-blast-nf

Nextflow pipeline to run blast for norovirus

Input

.fasta contig files after assembly and contig correction on Genieous.

Usage

Note the -profile and --cache switches, essential for proper operation of Conda.

Example command:

nextflow run BCCDC-PHL/norovirus-blast-nf --db <path/to/ref.fa> --fasta_input <path/to/input/fasta> --outdir <output_folder> -profile conda --cache ~/.conda/envs