diff --git a/.gitignore b/.gitignore index 5b96c65..d581b4d 100644 --- a/.gitignore +++ b/.gitignore @@ -39,7 +39,7 @@ data/RAW_PRIORS/community_dictionary_withtrialarm.csv data/GENERATED_PRIORS/ data/SAMPLED_PARAMETERS/ - +generate_network/ # eclipse related /Debug/ .cproject diff --git a/src/Makefile b/src/Makefile index 2e9a005..d431d25 100644 --- a/src/Makefile +++ b/src/Makefile @@ -36,10 +36,10 @@ endif # For compilation on Rescomp ifeq ($(location),rescomp) - INC = /apps/well/gsl/2.2.1-gcc4.9.3/include - LIB = /apps/well//gsl/2.2.1-gcc4.9.3/lib + INC = $EBROOTGSL/include + LIB = $EBROOTGSL/lib else - INC = /usr/local/include + INC = /usr/local/include LIB = /usr/local/lib endif diff --git a/src/constants.h b/src/constants.h index d9726c3..248c4a2 100644 --- a/src/constants.h +++ b/src/constants.h @@ -91,10 +91,10 @@ #define WRITE_ART_STATUS_BY_AGE_SEX 0 // Write totals of individuals in each ART_status stratified by sex and year of age. Write these for each time step. #define WRITE_DEBUG_CHIPS_STATES 0 /* Generates the files CHIPS_outputs_annual*.csv containing the annual data on people when they are visited by CHiPs. */ -#define WRITE_CALIBRATION 1 /* Write Calibration*.csv files to disk */ +#define WRITE_CALIBRATION 0 /* Write Calibration*.csv files to disk */ #define PRINT_ALL_RUNS 1 /* Use this if you want to print everything regardless of fitting. */ #define PRINT_EACH_RUN_OUTPUT 1 /* 0 if don't want to generate an output file for every run (when calibrating at present this is the case), or 1 if we do. */ -#define WRITE_EVERYTIMESTEP 1 /* Generates the files Timestep_outputs*.csv */ +#define WRITE_EVERYTIMESTEP 0 /* Generates the files Timestep_outputs*.csv */ #define TIMESTEP_AGE 0 /* Generates the files Timestep_age_outputs_*.csv */ #define WRITE_PHYLOGENETICS_OUTPUT 0 // 1 /* if 1 print phylo output to file, otherwise do not print */ #define WRITE_PARTNERSHIP_NETWORK_SNAPSHOT 0 /* if 1 then print out the sexual network at fixed times to allow network plots. Writes the files Partnership_network_*.csv to disk. The years at which partnerships are output are hard-coded in main.c */ diff --git a/src/popart-ibm.err b/src/popart-ibm.err new file mode 100644 index 0000000..e69de29 diff --git a/src/popart-ibm.out b/src/popart-ibm.out new file mode 100644 index 0000000..64dc36b --- /dev/null +++ b/src/popart-ibm.out @@ -0,0 +1,752 @@ +Offset for PC is 0 +Cohort size = 984 +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103187 103742 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103155 104912 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 106628 105263 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 97513 109307 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104247 102648 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100410 102946 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99691 97841 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99799 101687 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 98176 99314 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 105350 103451 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 106477 105142 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103607 103428 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103607 103428 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104545 107264 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100279 102921 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101841 97512 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99124 98042 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 105748 99377 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 98242 99931 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 96893 104306 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103767 108029 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104071 99586 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104071 99586 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102715 102646 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104735 100991 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101727 100950 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102985 96669 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102753 101970 individuals per patch +Offset for PC is 0 +Cohort size = 1024 +-------------------------------------Simulated a total of: 106658 98169 individuals per patch +-------------------------------------Simulated a total of: 104007 100433 individuals per patch +-------------------------------------Simulated a total of: 100586 103391 individuals per patch +-------------------------------------Simulated a total of: 101447 105032 individuals per patch +-------------------------------------Simulated a total of: 100833 103948 individuals per patch +-------------------------------------Simulated a total of: 100964 104776 individuals per patch +-------------------------------------Simulated a total of: 94357 103093 individuals per patch +-------------------------------------Simulated a total of: 108211 103656 individuals per patch +-------------------------------------Simulated a total of: 97189 99394 individuals per patch +-------------------------------------Simulated a total of: 100152 102356 individuals per patch +-------------------------------------Simulated a total of: 104149 101829 individuals per patch +-------------------------------------Simulated a total of: 105221 103088 individuals per patch +-------------------------------------Simulated a total of: 99306 108627 individuals per patch +-------------------------------------Simulated a total of: 101737 101342 individuals per patch +-------------------------------------Simulated a total of: 102194 99003 individuals per patch +-------------------------------------Simulated a total of: 96803 108674 individuals per patch +-------------------------------------Simulated a total of: 106025 106798 individuals per patch +-------------------------------------Simulated a total of: 105509 101513 individuals per patch +-------------------------------------Simulated a total of: 102010 97053 individuals per patch +-------------------------------------Simulated a total of: 99817 101499 individuals per patch +-------------------------------------Simulated a total of: 101482 104099 individuals per patch +-------------------------------------Simulated a total of: 102808 104378 individuals per patch +-------------------------------------Simulated a total of: 103364 109029 individuals per patch +-------------------------------------Simulated a total of: 104884 104239 individuals per patch +-------------------------------------Simulated a total of: 105187 99483 individuals per patch +-------------------------------------Simulated a total of: 99515 99334 individuals per patch +-------------------------------------Simulated a total of: 105400 104689 individuals per patch +-------------------------------------Simulated a total of: 102609 100324 individuals per patch +Offset for PC is 0 +Cohort size = 1776 +-------------------------------------Simulated a total of: 103646 103331 individuals per patch +-------------------------------------Simulated a total of: 102867 100023 individuals per patch +-------------------------------------Simulated a total of: 96353 100318 individuals per patch +-------------------------------------Simulated a total of: 97684 95677 individuals per patch +-------------------------------------Simulated a total of: 104149 105580 individuals per patch +-------------------------------------Simulated a total of: 101909 109653 individuals per patch +-------------------------------------Simulated a total of: 99643 107017 individuals per patch +-------------------------------------Simulated a total of: 95674 97246 individuals per patch +-------------------------------------Simulated a total of: 104382 107566 individuals per patch +-------------------------------------Simulated a total of: 99178 106926 individuals per patch +-------------------------------------Simulated a total of: 104535 104683 individuals per patch +-------------------------------------Simulated a total of: 98834 98393 individuals per patch +-------------------------------------Simulated a total of: 103718 98125 individuals per patch +-------------------------------------Simulated a total of: 96922 100337 individuals per patch +-------------------------------------Simulated a total of: 99831 101335 individuals per patch +-------------------------------------Simulated a total of: 103246 101002 individuals per patch +-------------------------------------Simulated a total of: 103062 99851 individuals per patch +-------------------------------------Simulated a total of: 100276 105751 individuals per patch +-------------------------------------Simulated a total of: 100276 105751 individuals per patch +-------------------------------------Simulated a total of: 100556 104777 individuals per patch +-------------------------------------Simulated a total of: 102181 101201 individuals per patch +-------------------------------------Simulated a total of: 99004 105460 individuals per patch +-------------------------------------Simulated a total of: 98726 97616 individuals per patch +-------------------------------------Simulated a total of: 98498 99310 individuals per patch +-------------------------------------Simulated a total of: 98600 96838 individuals per patch +-------------------------------------Simulated a total of: 98777 100861 individuals per patch +-------------------------------------Simulated a total of: 100546 102677 individuals per patch +-------------------------------------Simulated a total of: 99760 101396 individuals per patch +Offset for PC is 0 +Cohort size = 1692 +-------------------------------------Simulated a total of: 103478 102008 individuals per patch +-------------------------------------Simulated a total of: 97154 101633 individuals per patch +-------------------------------------Simulated a total of: 100282 99784 individuals per patch +-------------------------------------Simulated a total of: 100554 101134 individuals per patch +-------------------------------------Simulated a total of: 101851 99896 individuals per patch +-------------------------------------Simulated a total of: 105331 99392 individuals per patch +-------------------------------------Simulated a total of: 105083 101097 individuals per patch +-------------------------------------Simulated a total of: 103214 105157 individuals per patch +-------------------------------------Simulated a total of: 107694 110716 individuals per patch +-------------------------------------Simulated a total of: 102899 102305 individuals per patch +-------------------------------------Simulated a total of: 97750 95219 individuals per patch +-------------------------------------Simulated a total of: 101527 103118 individuals per patch +-------------------------------------Simulated a total of: 106604 103280 individuals per patch +-------------------------------------Simulated a total of: 97837 104385 individuals per patch +-------------------------------------Simulated a total of: 104094 107129 individuals per patch +-------------------------------------Simulated a total of: 104624 101381 individuals per patch +-------------------------------------Simulated a total of: 100737 102065 individuals per patch +-------------------------------------Simulated a total of: 107452 104283 individuals per patch +-------------------------------------Simulated a total of: 99118 104040 individuals per patch +-------------------------------------Simulated a total of: 99563 97392 individuals per patch +-------------------------------------Simulated a total of: 102402 102419 individuals per patch +-------------------------------------Simulated a total of: 101055 102845 individuals per patch +-------------------------------------Simulated a total of: 105058 103468 individuals per patch +-------------------------------------Simulated a total of: 105922 104512 individuals per patch +-------------------------------------Simulated a total of: 99576 105806 individuals per patch +-------------------------------------Simulated a total of: 100704 103426 individuals per patch +-------------------------------------Simulated a total of: 105470 103572 individuals per patch +-------------------------------------Simulated a total of: 100955 102703 individuals per patch +Offset for PC is 0 +Cohort size = 1966 +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 97962 108624 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 106403 97390 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99247 98547 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 96081 103540 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103921 99064 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100262 104311 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101771 101798 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 106497 100016 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 98397 104358 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102889 102964 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103195 105945 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 105487 100927 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102554 101997 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 108918 101267 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104320 106409 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101846 101346 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99810 99790 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103160 100258 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102088 105832 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103262 101917 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104225 106750 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 107673 110923 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102120 103970 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99662 105067 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104306 105425 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 97435 105177 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103098 98253 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=32, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 98988 101850 individuals per patch +Offset for PC is 0 +Cohort size = 2394 +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102642 98909 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99291 104158 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99291 104158 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 107670 103661 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 98862 101959 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99238 100945 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100889 97713 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 95824 106670 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102713 99586 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102973 101990 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 97442 95593 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99430 106553 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 107351 102880 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101004 105437 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102253 105762 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101846 100981 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100541 104666 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 97242 102757 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99113 106596 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101693 102523 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 94224 102235 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100634 104568 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102371 101706 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102371 101706 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102184 97815 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99190 100611 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 98389 96827 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=45. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101809 93760 individuals per patch +Offset for PC is 0 +Cohort size = 2100 +-------------------------------------Simulated a total of: 102509 106502 individuals per patch +-------------------------------------Simulated a total of: 98619 99646 individuals per patch +-------------------------------------Simulated a total of: 105259 97723 individuals per patch +-------------------------------------Simulated a total of: 99397 97468 individuals per patch +-------------------------------------Simulated a total of: 102549 99696 individuals per patch +-------------------------------------Simulated a total of: 103855 99593 individuals per patch +-------------------------------------Simulated a total of: 106320 106417 individuals per patch +-------------------------------------Simulated a total of: 106193 96976 individuals per patch +-------------------------------------Simulated a total of: 101586 104377 individuals per patch +-------------------------------------Simulated a total of: 107243 104448 individuals per patch +-------------------------------------Simulated a total of: 96782 98001 individuals per patch +-------------------------------------Simulated a total of: 100482 101460 individuals per patch +-------------------------------------Simulated a total of: 100482 101460 individuals per patch +-------------------------------------Simulated a total of: 99477 103220 individuals per patch +-------------------------------------Simulated a total of: 107799 99086 individuals per patch +-------------------------------------Simulated a total of: 105930 91777 individuals per patch +-------------------------------------Simulated a total of: 101141 105932 individuals per patch +-------------------------------------Simulated a total of: 101024 101242 individuals per patch +-------------------------------------Simulated a total of: 97407 103067 individuals per patch +-------------------------------------Simulated a total of: 99390 102994 individuals per patch +-------------------------------------Simulated a total of: 95110 101683 individuals per patch +-------------------------------------Simulated a total of: 96389 104129 individuals per patch +-------------------------------------Simulated a total of: 103698 99990 individuals per patch +-------------------------------------Simulated a total of: 96662 101124 individuals per patch +-------------------------------------Simulated a total of: 108852 99326 individuals per patch +-------------------------------------Simulated a total of: 103782 104575 individuals per patch +-------------------------------------Simulated a total of: 101414 103377 individuals per patch +-------------------------------------Simulated a total of: 110811 101790 individuals per patch +Offset for PC is 0 +Cohort size = 1628 +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102296 104293 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 105265 103794 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 107484 99172 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 106736 101240 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 98674 103560 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103216 95158 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100684 104301 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103528 104594 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103138 101462 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103362 103222 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100342 103075 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102765 105530 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102895 105619 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101207 105707 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103414 101246 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 107184 103832 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 105707 105321 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102531 100953 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101713 98577 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104938 99716 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 96815 104411 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102334 106979 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101165 100248 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 98646 99638 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 96152 103243 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100523 98112 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102072 101403 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=31, CHIPS_START_YEAR=2013 CHIPS_START_TIMESTEP=46. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102025 101195 individuals per patch +Offset for PC is 0 +Cohort size = 1387 +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103948 108289 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 109310 101625 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102270 98896 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 106671 103248 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103203 97614 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 98067 97856 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99915 101358 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101209 104261 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102786 104724 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 97462 97308 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99570 104287 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 97204 99888 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104075 103200 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 97353 104071 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101431 109097 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 97973 103581 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100185 104351 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104709 108606 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 96341 106054 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100017 107262 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101566 97156 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102018 98183 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 105426 99686 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 97889 96067 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100593 104724 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100593 104724 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103952 103891 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2015, t_step=22, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=0. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99994 99615 individuals per patch +Offset for PC is 0 +Cohort size = 1757 +-------------------------------------Simulated a total of: 101729 96594 individuals per patch +-------------------------------------Simulated a total of: 101394 99667 individuals per patch +-------------------------------------Simulated a total of: 103763 105945 individuals per patch +-------------------------------------Simulated a total of: 104259 106389 individuals per patch +-------------------------------------Simulated a total of: 103737 101385 individuals per patch +-------------------------------------Simulated a total of: 100354 101160 individuals per patch +-------------------------------------Simulated a total of: 103284 99651 individuals per patch +-------------------------------------Simulated a total of: 102293 101390 individuals per patch +-------------------------------------Simulated a total of: 97840 104356 individuals per patch +-------------------------------------Simulated a total of: 102069 102895 individuals per patch +-------------------------------------Simulated a total of: 98139 100422 individuals per patch +-------------------------------------Simulated a total of: 98735 99827 individuals per patch +-------------------------------------Simulated a total of: 111401 103608 individuals per patch +-------------------------------------Simulated a total of: 100816 101787 individuals per patch +-------------------------------------Simulated a total of: 103894 97699 individuals per patch +-------------------------------------Simulated a total of: 105349 101337 individuals per patch +-------------------------------------Simulated a total of: 103698 104892 individuals per patch +-------------------------------------Simulated a total of: 99107 105043 individuals per patch +-------------------------------------Simulated a total of: 102058 97664 individuals per patch +-------------------------------------Simulated a total of: 99914 106501 individuals per patch +-------------------------------------Simulated a total of: 102569 100921 individuals per patch +-------------------------------------Simulated a total of: 99227 102724 individuals per patch +-------------------------------------Simulated a total of: 103425 95086 individuals per patch +-------------------------------------Simulated a total of: 101859 99728 individuals per patch +-------------------------------------Simulated a total of: 102426 105862 individuals per patch +-------------------------------------Simulated a total of: 97582 101643 individuals per patch +-------------------------------------Simulated a total of: 101603 99515 individuals per patch +-------------------------------------Simulated a total of: 106970 100937 individuals per patch +Offset for PC is 0 +Cohort size = 1555 +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99524 99926 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 96565 94407 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104202 102268 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 104202 102268 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100332 101771 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 95987 94210 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103040 103201 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100120 103170 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 108695 107253 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99425 103498 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 106461 99598 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100877 97582 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99016 95886 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103823 99282 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 107263 100503 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102555 101012 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 102469 98611 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100495 101899 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 101596 98266 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100268 99073 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103138 97331 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100901 97037 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99682 100272 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 96039 98285 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 105913 99896 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 103483 100468 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 100038 96845 individuals per patch +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=33, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=34, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=35, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +Warning - in get_chips_round() CHiPs does not seem to be running in year=2016, t_step=36, CHIPS_START_YEAR=2014 CHIPS_START_TIMESTEP=3. Check that CHiPs were on between-rounds training. +-------------------------------------Simulated a total of: 99967 103972 individuals per patch +Offset for PC is 0 +Cohort size = 1049 +-------------------------------------Simulated a total of: 103290 97334 individuals per patch +-------------------------------------Simulated a total of: 97363 102619 individuals per patch +-------------------------------------Simulated a total of: 97363 102619 individuals per patch +-------------------------------------Simulated a total of: 100385 98954 individuals per patch +-------------------------------------Simulated a total of: 96483 100116 individuals per patch +-------------------------------------Simulated a total of: 106445 99428 individuals per patch +-------------------------------------Simulated a total of: 97357 107321 individuals per patch +-------------------------------------Simulated a total of: 98031 99567 individuals per patch +-------------------------------------Simulated a total of: 99390 101218 individuals per patch +-------------------------------------Simulated a total of: 98868 99318 individuals per patch +-------------------------------------Simulated a total of: 102424 99897 individuals per patch +-------------------------------------Simulated a total of: 102731 102017 individuals per patch +-------------------------------------Simulated a total of: 104985 106584 individuals per patch +-------------------------------------Simulated a total of: 101148 102273 individuals per patch +-------------------------------------Simulated a total of: 103050 99965 individuals per patch +-------------------------------------Simulated a total of: 106270 104431 individuals per patch +-------------------------------------Simulated a total of: 99470 100779 individuals per patch +-------------------------------------Simulated a total of: 104623 104156 individuals per patch +-------------------------------------Simulated a total of: 101636 101621 individuals per patch +-------------------------------------Simulated a total of: 105329 97653 individuals per patch +-------------------------------------Simulated a total of: 103713 103976 individuals per patch +-------------------------------------Simulated a total of: 102877 100784 individuals per patch +-------------------------------------Simulated a total of: 101141 105035 individuals per patch +-------------------------------------Simulated a total of: 104403 104323 individuals per patch +-------------------------------------Simulated a total of: 102146 105082 individuals per patch +-------------------------------------Simulated a total of: 100856 103960 individuals per patch +-------------------------------------Simulated a total of: 98995 102761 individuals per patch +-------------------------------------Simulated a total of: 102680 104602 individuals per patch diff --git a/src/run_popart.sh b/src/run_popart.sh new file mode 100644 index 0000000..ca26d54 --- /dev/null +++ b/src/run_popart.sh @@ -0,0 +1,26 @@ +#!/bin/bash + + +#SBATCH -A fraser.prj +#SBATCH -J popart-ibm + +#SBATCH -o popart-ibm.out + +#SBATCH -e popart-ibm.err +#SBATCH -p short +module unload GSL +module load GSL/2.6-GCC-8.3.0 +module load intel +starting_run=1 +number_of_runs=1000 +number_of_sims=28 +input_dir="/well/fraser/users/zkv138/PARAMETERS/POSTERIORS" + +for community in {1..12}; do + $(pwd)/popart-simul.exe ${input_dir}/PARAMS_COMMUNITY${community}_ACCEPTED $number_of_runs 0 $starting_run $number_of_sims $input_dir/Outputs +done + +#get rid of anything non phylo_related + +rm ${input_dir}/Outputs/CHIPS* +rm ${input_dir}/Outputs/Annual*