From c2a5f92d6f251a6daead22cf609df8748bffaba5 Mon Sep 17 00:00:00 2001
From: Tim Whiteaker <whiteaker@utexas.edu>
Date: Thu, 26 Oct 2023 16:16:44 -0500
Subject: [PATCH] Fix some warnings

---
 DESCRIPTION                       | 2 +-
 R/insert_additional_metadata.R    | 2 +-
 man/insert_additional_metadata.Rd | 2 +-
 man/order_cp_cols.Rd              | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 4bd503e..9545f4d 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -5,7 +5,7 @@ Version: 0.1.2
 Authors@R: c(
   person("An T.", "Nguyen", email = "enthusiast@utexas.edu", role = c("aut", "cre")),
   person("Tim", "Whiteaker", email = "whiteaker@utexas.edu", role = "aut"))
-Description: Utility functions for BLE LTER IM team
+Description: This package contains utility functions for BLE LTER IM team.
 License: CC BY 4.0
 Encoding: UTF-8
 LazyData: true
diff --git a/R/insert_additional_metadata.R b/R/insert_additional_metadata.R
index 61dde3d..773930f 100644
--- a/R/insert_additional_metadata.R
+++ b/R/insert_additional_metadata.R
@@ -1,7 +1,7 @@
 #' Insert additional metadata into an EML document
 #' @description Sometime, for various reasons, additional metadata just needs to be inserted into EML documents manually. This is for quickly doing that in R. The function adds a snippet of plain text EML after a specified line number in the EML file. A pattern can also be defined for grep-ing the line number to append to (e.g. additional metadata needs to be inserted after a specific line). The defaults reflect BLE's need to add a snippet to aid replication of metadata to the Arctic Data Center that for a certain reason cannot be added via our normal means (the EML R package).
 #' @param file (character) Path to EML file. Function will also write to this same file.
-#' @param pattern (character) Grep pattern. \code{grep()} will be called on the contents of the file, and the first match will be used. Defaults to "<\dataset>".
+#' @param pattern (character) Grep pattern. \code{grep()} will be called on the contents of the file, and the first match will be used. Defaults to "</dataset>".
 #' @param addition (character) Plain text of EML snippet to insert. Defaults to an "additionalMetadata" node pertaining to replication I won't paste here.
 #' @param after (numeric) A line number to append after. Only comes into play if pattern is not found. No defaults.
 #' @return Nothing in the R environment, but a file with the snippet inserted where specified. File will remain the same
diff --git a/man/insert_additional_metadata.Rd b/man/insert_additional_metadata.Rd
index 0d4fcd1..a9be8ae 100644
--- a/man/insert_additional_metadata.Rd
+++ b/man/insert_additional_metadata.Rd
@@ -9,7 +9,7 @@ insert_additional_metadata(file, pattern = NULL, addition = NULL, after)
 \arguments{
 \item{file}{(character) Path to EML file. Function will also write to this same file.}
 
-\item{pattern}{(character) Grep pattern. \code{grep()} will be called on the contents of the file, and the first match will be used. Defaults to "<\dataset>".}
+\item{pattern}{(character) Grep pattern. \code{grep()} will be called on the contents of the file, and the first match will be used. Defaults to "</dataset>".}
 
 \item{addition}{(character) Plain text of EML snippet to insert. Defaults to an "additionalMetadata" node pertaining to replication I won't paste here.}
 
diff --git a/man/order_cp_cols.Rd b/man/order_cp_cols.Rd
index e986295..d2aa698 100644
--- a/man/order_cp_cols.Rd
+++ b/man/order_cp_cols.Rd
@@ -12,5 +12,5 @@ order_cp_cols(data, type)
 \item{type}{(character) Type of CP data. Choose from "water", "sediment", or "mooring". Use "sediment" for biota data as well.}
 }
 \description{
-Order Core Program data columns in this particular order: node, lagoon, station, season, date_time, water_column_position, (insert data columns), station_name, latitude, longitude, station_depth, habitat_type, station_sampling_priority.
+Order Core Program data columns in this particular order: node, lagoon, station, season, date_time, water_column_position, (insert data columns), station_name, latitude, longitude, station_depth, habitat_type, station_sampling_priority. Note that station_depth is optional.
 }