updated modules

BU-ISCIII · Dec 19, 2023 · 20dc34d · 20dc34d
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Showing 290 changed files with 9,009 additions and 434 deletions.
diff --git a/modules.json b/modules.json
diff --git a/modules/nf-core/abacas/environment.yml b/modules/nf-core/abacas/environment.yml
diff --git a/modules/nf-core/abacas/main.nf b/modules/nf-core/abacas/main.nf
diff --git a/modules/nf-core/abacas/meta.yml b/modules/nf-core/abacas/meta.yml
diff --git a/modules/nf-core/abacas/tests/main.nf.test b/modules/nf-core/abacas/tests/main.nf.test
diff --git a/modules/nf-core/abacas/tests/main.nf.test.snap b/modules/nf-core/abacas/tests/main.nf.test.snap
diff --git a/modules/nf-core/abacas/tests/nextflow.config b/modules/nf-core/abacas/tests/nextflow.config
diff --git a/modules/nf-core/abacas/tests/tags.yml b/modules/nf-core/abacas/tests/tags.yml
diff --git a/modules/nf-core/artic/guppyplex/environment.yml b/modules/nf-core/artic/guppyplex/environment.yml
diff --git a/modules/nf-core/artic/guppyplex/main.nf b/modules/nf-core/artic/guppyplex/main.nf
diff --git a/modules/nf-core/artic/guppyplex/meta.yml b/modules/nf-core/artic/guppyplex/meta.yml
diff --git a/modules/nf-core/artic/minion/environment.yml b/modules/nf-core/artic/minion/environment.yml
diff --git a/modules/nf-core/artic/minion/main.nf b/modules/nf-core/artic/minion/main.nf
diff --git a/modules/nf-core/artic/minion/meta.yml b/modules/nf-core/artic/minion/meta.yml
diff --git a/modules/nf-core/bandage/image/environment.yml b/modules/nf-core/bandage/image/environment.yml
diff --git a/modules/nf-core/bandage/image/main.nf b/modules/nf-core/bandage/image/main.nf
diff --git a/modules/nf-core/bandage/image/meta.yml b/modules/nf-core/bandage/image/meta.yml
diff --git a/modules/nf-core/bcftools/consensus/environment.yml b/modules/nf-core/bcftools/consensus/environment.yml
diff --git a/modules/nf-core/bcftools/consensus/main.nf b/modules/nf-core/bcftools/consensus/main.nf
diff --git a/modules/nf-core/bcftools/consensus/meta.yml b/modules/nf-core/bcftools/consensus/meta.yml
diff --git a/modules/nf-core/bcftools/filter/environment.yml b/modules/nf-core/bcftools/filter/environment.yml
diff --git a/modules/nf-core/bcftools/filter/main.nf b/modules/nf-core/bcftools/filter/main.nf
diff --git a/modules/nf-core/bcftools/filter/meta.yml b/modules/nf-core/bcftools/filter/meta.yml
diff --git a/modules/nf-core/bcftools/mpileup/environment.yml b/modules/nf-core/bcftools/mpileup/environment.yml