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New ivar_variants_to_vcf.py #32

Merged
merged 12 commits into from
Jul 19, 2024
Merged

New ivar_variants_to_vcf.py #32

merged 12 commits into from
Jul 19, 2024

Commits on Jun 21, 2024

  1. New ivar_variants_to_vcf.py

    @Shettland
    Shettland committed Jun 21, 2024
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  2. Updated CHANGELOG.md

    @Shettland
    Shettland committed Jun 21, 2024
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  3. Fixed ivar_to_vcf deleting close variants after merge

    @Shettland
    Shettland committed Jun 21, 2024
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  4. Updated ivar-to-vcf, cleaning columns and saving not-merged varints

    @Shettland
    Shettland committed Jun 21, 2024
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  5. Updated ivar-to-vcf, linting1

    @Shettland
    Shettland committed Jun 21, 2024
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  6. Re-update of ivar-to-vcf. v2

    @Shettland
    Shettland committed Jun 21, 2024
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Commits on Jun 26, 2024

  1. Small fixes to ivar-vcf_v2 script

    @Shettland
    Shettland committed Jun 26, 2024
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  2. Updated CHANGELOG.md

    @Shettland
    Shettland committed Jun 26, 2024
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  3. Linting ivar-to-vcf

    @Shettland
    Shettland committed Jun 26, 2024
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Commits on Jun 27, 2024

  1. Included reviewer comments

    @Shettland
    Shettland committed Jun 27, 2024
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Commits on Jul 1, 2024

  1. Skipped refs when ref_dp is 0

    @Shettland
    Shettland committed Jul 1, 2024
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Commits on Jul 2, 2024

  1. ref AF is now calculated using ref_DP

    @Shettland
    Shettland committed Jul 2, 2024
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