source tables

sprivite · sprivite · commit 7ac94331c107 · 2024-11-19T10:42:21.000+01:00
diff --git a/phenex/mappers.py b/phenex/mappers.py
@@ -148,12 +148,12 @@ def rename(self, table: Table) -> Table:
     SEX="GENDER_CONCEPT_ID", ETHNICITY="ETHNICITY_CONCEPT_ID"
 )
 
-OMOPPersonTableSourceColumnMapper = PersonTableColumnMapper(
+OMOPDeathTableColumnMapper = PersonTableColumnMapper(
     NAME_TABLE="DEATH", PERSON_ID="PERSON_ID",
     DATE_OF_DEATH="DEATH_DATE"
 )
 
-OMOPDeathTableColumnMapper = PersonTableColumnMapper(
+OMOPPersonTableSourceColumnMapper = PersonTableColumnMapper(
     NAME_TABLE="PERSON", PERSON_ID="PERSON_ID", 
     YEAR_OF_BIRTH="YEAR_OF_BIRTH",
     SEX="GENDER_CONCEPT_ID", ETHNICITY="ETHNICITY_CONCEPT_ID"

Original file line number	Diff line number	Diff line change
`@@ -148,12 +148,12 @@ def rename(self, table: Table) -> Table:`
`148`	`148`	`SEX="GENDER_CONCEPT_ID", ETHNICITY="ETHNICITY_CONCEPT_ID"`
`149`	`149`	`)`
`150`	`150`
`151`		`-OMOPPersonTableSourceColumnMapper = PersonTableColumnMapper(`
	`151`	`+OMOPDeathTableColumnMapper = PersonTableColumnMapper(`
`152`	`152`	`NAME_TABLE="DEATH", PERSON_ID="PERSON_ID",`
`153`	`153`	`DATE_OF_DEATH="DEATH_DATE"`
`154`	`154`	`)`
`155`	`155`
`156`		`-OMOPDeathTableColumnMapper = PersonTableColumnMapper(`
	`156`	`+OMOPPersonTableSourceColumnMapper = PersonTableColumnMapper(`
`157`	`157`	`NAME_TABLE="PERSON", PERSON_ID="PERSON_ID",`
`158`	`158`	`YEAR_OF_BIRTH="YEAR_OF_BIRTH",`
`159`	`159`	`SEX="GENDER_CONCEPT_ID", ETHNICITY="ETHNICITY_CONCEPT_ID"`