run_pytests.yaml

name: tiffslide ci

on:
  push:
    branches:
      - main
    tags:
      - v*.*.*
  pull_request: {}

jobs:
  # RUN PYTEST ON TIFFSLIDE SOURCE
  tests:
    name: pytest ${{ matrix.os }}::py${{ matrix.python-version }}
    runs-on: ${{ matrix.os }}
    strategy:
      max-parallel: 5
      fail-fast: false
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ["3.11"]
        include:
          # we'll test the python support on ubuntu
          - os: ubuntu-latest
            python-version: "3.10"
          - os: ubuntu-latest
            python-version: "3.9"
          - os: ubuntu-latest
            python-version: "3.8"
    steps:
      - name: Checkout TiffSlide
        uses: actions/checkout@v3
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install TiffSlide
        run: python -m pip install -e .[dev]
      - name: Cache tiffslide/tests/data
        uses: actions/cache@v3
        with:
          path: tiffslide/tests/data
          key: downloaded-slides
      - name: Run Tests
        run: pytest --cov=./tiffslide tiffslide

  # RUN MYPY STATIC TYPE ANALYSIS ON TIFFSLIDE SOURCE
  typing:
    name: mypy type analysis
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.8
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install -e .[dev]
      - name: Run mypy
        run: |
          mypy --install-types --non-interactive --python-version=3.8 tiffslide

  # DEPLOY TIFFSLIDE TO TEST.PYPI ON SUCCESS
  testdeploy:
    needs: [tests, typing]
    name: deploy to test.pypi
    runs-on: ubuntu-latest
    if: github.event_name == 'push' && github.ref == 'refs/heads/main'
    steps:
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.8
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install wheel "setuptools_scm>=6.2" build
      # we'll have to remove local_scheme for pushes to test.pypi pep440
      - name: Get version without local_scheme
        id: non_local_version
        run: |
          python -m setuptools_scm | awk -F+ '{print "::set-output name=version::"$1}'
      - name: Build a binary wheel and a source tarball
        env:
          SETUPTOOLS_SCM_PRETEND_VERSION: ${{ steps.non_local_version.outputs.version }}
        run: |
          python -m build .
      # push all versions on master to test.pypi.org
      - name: Publish package to TestPyPI
        continue-on-error: true
        uses: pypa/gh-action-pypi-publish@release/v1
        with:
          user: __token__
          password: ${{ secrets.test_pypi_password }}
          repository_url: https://test.pypi.org/legacy/

  # DEPLOY TIFFSLIDE TO PYPI ON SUCCESS
  deploy:
    needs: [tests, typing]
    name: deploy to pypi
    runs-on: ubuntu-latest
    if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
    steps:
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.8
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install build
      - name: Build a binary wheel and a source tarball
        run: |
          python -m build .
      # push all tagged versions to pypi.org
      - name: Publish package to PyPI
        uses: pypa/gh-action-pypi-publish@release/v1
        with:
          user: __token__
          password: ${{ secrets.pypi_password }}