-
-

Getting started with Mambaforge and Python#

+
+

Getting started with ~~Mamba~~*Miniforge and Python#

Mara Lampert, January 26th, 2023

-
-

Introduction to Python and Mamba#

-

This blog post explains what Python and Mamba/ Mambaforge, and how you can download and setup it on your computer. We will also go through some steps how to get started with Bio-image Analysis.

+

updated by Stefan Hahmann, December 18th, 2023

+

(*) After the release of Miniforge 23.3.1 in August 2023, Miniforge and Mambaforge are essentially identical. The only difference is the name of the installer and subsequently the default installation path.

+
+

Introduction to Python and Miniforge#

+

This blog post explains what Python and Mamba / Miniforge is, and how you can download and setup it on your computer. We will also go through some steps how to get started with Bio-image Analysis.

Note: This is an update of a previous Blogpost written by Johannes.

@@ -432,29 +434,29 @@

Introduction to Python and Mambahere.

-
-

Installation of Mambaforge#

-

Here, I am going to show how to install Mambaforge. It comes with everything you need and downloads it from a community-driven open source software provider called conda-forge. -First, you pick the Mambaforge installer for your operating system here:

-

+
+

Installation of Miniforge#

+

Here, I am going to show how to install Miniforge. It comes with everything you need and downloads it from a community-driven open source software provider called conda-forge. +First, you pick the Miniforge installer for your operating system here:

+

All Mac OS users can now jump here.

Installation on Windows#

-

When Mambaforge finished downloading, follow these steps during the installation:

+

When Miniforge finished downloading, follow these steps during the installation:

Click Next:

-

+

Click I Agree:

-

-

Now you have the option to either install Mambaforge for Just Me or for All Users. We highly recommend picking Just Me, as the other option requires Administrator priviledges and it can make installing packages more difficult later on.

-

-

Install Mambaforge into the default location:

-

-

In the next step we recommend to additionally tick Add Mambaforge to my Path. If you don’t add it to the Path, Conda and Mamba would not work from any Terminal Window. Click Install

-

+

+

Now you have the option to either install Miniforge3 for Just Me or for All Users. We highly recommend picking Just Me, as the other option requires Administrator priviledges and it can make installing packages more difficult later on.

+

+

Install Miniforge3 into the default location:

+

+

In the next step we recommend to additionally tick Add Miniforge3 to my Path. If you don’t add it to the Path, Conda and Mamba would not work from any Terminal Window. Click Install

+

Click Next at the next window and you arrive here. Click Finish to exit the setup:

-

+

Great! You are ready to start coding! 👍 -To see how to use Mambaforge, jump here

+To see how to use Mamba, jump here

Installation on Mac OS#

@@ -463,22 +465,22 @@

Installation on Mac OSThe opened Terminal should look like this:

Then type these two lines to start the installation

-
curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-$(uname)-$(uname -m).sh"
+
curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh"
 

 

-
bash Mambaforge-$(uname)-$(uname -m).sh
+
bash Miniforge3-$(uname)-$(uname -m).sh
 

 

-
You  just follow the instructions, press Enter and type yes like here:

+
You just follow the instructions, press Enter and type yes like here:

 

 
When you see this:

 

 
you are finished! Close and reopen the Terminal now. Happy coding! 👍

-
-

Using Mambaforge#

-

Now we use Mambaforge by opening the command line. If you are not familiar with the command line yet, you can check out Roberts tutorial here.

+
+

Using Mamba#

+

Now we use Mamba by opening the command line. If you are not familiar with the command line yet, you can check out Roberts tutorial here.

To open the Command Prompt in Windows, press the Windows button, type cmd and press Enter. The Mac OS users should already know how to open the Terminal ;-)

When you open the command line, it should look like this:

@@ -486,7 +488,7 @@

Using Mambaforgehere. If this happens in any environment apart from the base environment it is no problem. You can delete the environment, recreate it and start again. If this happens in the base environment, you need to delete and reinstall Mambaforge.

+

The reason for this is that incompatibilities between packages can occur. Robert demonstrated this here. If this happens in any environment apart from the base environment it is no problem. You can delete the environment, recreate it and start again. If this happens in the base environment, you need to delete and reinstall Miniforge.

Creating a new environment#

@@ -572,7 +574,7 @@

Deactivation or Deletion of an environment -

Now you have Mambaforge installed, know how to work with conda environments and know about some very important packages. Have fun starting your own Bio-image Analysis project! 👍

+

Now you have Miniforge installed, know how to work with conda environments and know about some very important packages. Have fun starting your own Bio-image Analysis project! 👍

@@ -644,13 +646,13 @@

Deactivation or Deletion of an environment
    -
  • Introduction to Python and Mamba
    • -
  • Installation of Mambaforge
      +
    • Introduction to Python and Miniforge
      • +
    • Installation of Miniforge
      • -
    • Using Mambaforge
      • +
    • Using Mamba
    • Creating a new environment
    • Starting napari
    • Working with Jupyter lab
      • diff --git a/mara_lampert/readme.html b/mara_lampert/readme.html index b5cf2a44..57fce04a 100644 --- a/mara_lampert/readme.html +++ b/mara_lampert/readme.html @@ -159,7 +159,7 @@

      Blog Posts

      • Best of both worlds: Combining Qt Designer and magicgui
        • -
      • Getting started with Mambaforge and Python
        • +
      • Getting started with ~~Mamba~~*Miniforge and Python
      • Using GPU-accelerated image processing on the TUD HPC cluster
      • Setting up GPU-accelerated image processing on the TUD HPC cluster
      • Running Deep-Learning Scripts in the BiA-PoL Omero Server
        • diff --git a/marcelo_zoccoler/entry_user_interf3/Readme.html b/marcelo_zoccoler/entry_user_interf3/Readme.html index bd21d9ab..6cfe7c4e 100644 --- a/marcelo_zoccoler/entry_user_interf3/Readme.html +++ b/marcelo_zoccoler/entry_user_interf3/Readme.html @@ -159,7 +159,7 @@

        Blog Posts

        • Best of both worlds: Combining Qt Designer and magicgui
          • -
        • Getting started with Mambaforge and Python
          • +
        • Getting started with ~~Mamba~~*Miniforge and Python
        • Using GPU-accelerated image processing on the TUD HPC cluster
        • Setting up GPU-accelerated image processing on the TUD HPC cluster
        • Running Deep-Learning Scripts in the BiA-PoL Omero Server
          • diff --git a/marcelo_zoccoler/entry_user_interf4/Readme.html b/marcelo_zoccoler/entry_user_interf4/Readme.html index a5918329..94b59479 100644 --- a/marcelo_zoccoler/entry_user_interf4/Readme.html +++ b/marcelo_zoccoler/entry_user_interf4/Readme.html @@ -159,7 +159,7 @@

          Blog Posts

          • Best of both worlds: Combining Qt Designer and magicgui
            • -
          • Getting started with Mambaforge and Python
            • +
          • Getting started with ~~Mamba~~*Miniforge and Python
          • Using GPU-accelerated image processing on the TUD HPC cluster
          • Setting up GPU-accelerated image processing on the TUD HPC cluster
          • Running Deep-Learning Scripts in the BiA-PoL Omero Server
            • diff --git a/marcelo_zoccoler/jamovi/jamovi.html b/marcelo_zoccoler/jamovi/jamovi.html index d294bce9..8e006da1 100644 --- a/marcelo_zoccoler/jamovi/jamovi.html +++ b/marcelo_zoccoler/jamovi/jamovi.html @@ -159,7 +159,7 @@

            Blog Posts

            • Best of both worlds: Combining Qt Designer and magicgui
              • -
            • Getting started with Mambaforge and Python
              • +
            • Getting started with ~~Mamba~~*Miniforge and Python
            • Using GPU-accelerated image processing on the TUD HPC cluster
            • Setting up GPU-accelerated image processing on the TUD HPC cluster
            • Running Deep-Learning Scripts in the BiA-PoL Omero Server
              • diff --git a/marcelo_zoccoler/mini_sabbatical_rike/Readme.html b/marcelo_zoccoler/mini_sabbatical_rike/Readme.html index 54625c21..0d03fb93 100644 --- a/marcelo_zoccoler/mini_sabbatical_rike/Readme.html +++ b/marcelo_zoccoler/mini_sabbatical_rike/Readme.html @@ -159,7 +159,7 @@

              Blog Posts

              • Best of both worlds: Combining Qt Designer and magicgui
                • -
              • Getting started with Mambaforge and Python
                • +
              • Getting started with ~~Mamba~~*Miniforge and Python
              • Using GPU-accelerated image processing on the TUD HPC cluster
              • Setting up GPU-accelerated image processing on the TUD HPC cluster
              • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                • diff --git a/marcelo_zoccoler/omero_scripts/readme.html b/marcelo_zoccoler/omero_scripts/readme.html index 5710c69b..8e1188f2 100644 --- a/marcelo_zoccoler/omero_scripts/readme.html +++ b/marcelo_zoccoler/omero_scripts/readme.html @@ -159,7 +159,7 @@

                Blog Posts

                • Best of both worlds: Combining Qt Designer and magicgui
                  • -
                • Getting started with Mambaforge and Python
                  • +
                • Getting started with ~~Mamba~~*Miniforge and Python
                • Using GPU-accelerated image processing on the TUD HPC cluster
                • Setting up GPU-accelerated image processing on the TUD HPC cluster
                • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                  • diff --git a/marcelo_zoccoler/readme.html b/marcelo_zoccoler/readme.html index ab921ff0..730bdefa 100644 --- a/marcelo_zoccoler/readme.html +++ b/marcelo_zoccoler/readme.html @@ -159,7 +159,7 @@

                  Blog Posts

                  • Best of both worlds: Combining Qt Designer and magicgui
                    • -
                  • Getting started with Mambaforge and Python
                    • +
                  • Getting started with ~~Mamba~~*Miniforge and Python
                  • Using GPU-accelerated image processing on the TUD HPC cluster
                  • Setting up GPU-accelerated image processing on the TUD HPC cluster
                  • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                    • diff --git a/objects.inv b/objects.inv index b4d8a2d5a1ce2849d1185bc58681154f354e7cee..74ddb4baf0624bc840d2170d0d4accaafea778e3 100644 GIT binary patch delta 1268 zcmVYJS}W~ZMGwhRoNs16&J2g73#deu!virkKa(s2NybN{NV7jLZ7In| zKOBj&)}pcjm@DpKX)2-Oj}iXUs)h0s5%UEkS0(%~`l^&HHz*65=tc_fql_dOSqZx&=Sh>WDkrnG zU8-uE8el-y)YMB+Jq)4KfsYi+1WhN?LQ@>ksnQVkgYHSSW2@kBSB}{TC z)j@1G4MfgwD@ClZ5`Gz#OfxDG0NPHTZ4&CM4(*f~!+%H@5X{yg-V?nQz5ixu&rW=N zy!MKZk3U^wOoRUBrfm7`p|$Dj8U^Gk3cL{xQqgaUbJbapCmjVdTDkg4m3@tIGw6~+qAB<7UKwGjplicO?PGXD?|o2t_t1c5}+Pm0n_2vJR&i3#4Z7eoO>eVlQ%==pzrZC-EuO3$Fp7H zh2+m99F;2XxMtMraU)22Dt8jng`)<)J7yfq0)f6ui@>bb z3V(Y?pq~noOXYHGE`I8LFop*s8Vj46%Xf{ZXVhK2rrdE+ZVY!5?m`cw8JSIQXMY4n z)7$CC>z!Qs0{0yGA`V_VM#Wobb0`hXoRB%SN=ehlqZ8d+{;}Ii>HWpBQVUB0IA95G zqA$3wumsx#dOWuJR1lC4UeGq;PxKr+J%24~*JrT<8_nN_V9il{iDF-76|0#RaUb|t z8&}s#2T|u*R?9VA0rjn>kHt1Ly?mByvVzd9MtaREJUZ@$l#@3{G`x>6^1CldgA|%{ zp)7Yi-2bggi%;FopU|-(oTpQ>&E@#Xw7CmKH+gQatxhhO5j>nF$who}aB(MW!hh~s zM~|}~kKb5@{{mwTsOT66-Zg%r^G35fDlc9|Z=8CPwo~JO;deqad=C~{ zIlM3%ms!n%>B-YH*_if*4Hv1Im}pk)P2K2$}CHXL$ el4Pl$A2ncIeF)2zW)qqC&~){|g#QKmL^{?Q-d%kF delta 1256 zcmV%$1_W0WVvu0* zu&n;J-ulP7c+e&-N~G24At8kQcK5^XVga~-N>n*K5@YlCl4T&t^n?^?_J_4CCHd@! z6H(S$R5k!}#XT%dB~<(|!GBtHP<|p}zJlbcgzqNb)S6Wl7=KzikP`Il7Fb?FTWt>{ z8u}#($<051d*QA@Rxz%soY4ZT6;(lvW!geM#?ydqr0_AyNRp9_uxoOWGzqJ6ve??S zs&=UX24qW3y%yEu7&<-pNa4a+RWk3qX8fKNK+uFM5znkpRiv~Gdiz*71Daxn#-(77 zPGmE82I&wlC4WJ>VjMHHQaVL~yjftV$jRGbGON>L=san?j?ifjp+9X7MidpA##GXh z6@nK|jA3u}oZ2;;(JPJo#$c~h$m=%y5IdkB@d(Wqfr z#)3Vn#eY4FiO~VQR4E9UE}sD8!z0#=fQn-sT5>7abfKwb0h{nRE=JG@1=>>IHZz*?Nl&#@@!hPtGG$XV5-QxGaXnr^Ue6yF!P~cu7 zU&X;|$EbJ8~jhAj4AqxriKtbZknuTbpEtYS6OBJKkpYvbx#=^*M|%Vxc$ z8=$_`46)dSrU%b@OEwU?)kJSug-6GOkaG6!gobAkMt=X@Xp};eE|lethiku8Y4NGs z`4c)ego|`)cDbBBn>P2M=w>hNb=AowGlGY+B)Nz$4KD75P1t?w7;yIe={u|Nzkgr^ zzl}>AMyEIs9u*zqz`Mpzblzz8N9EP47>v_E()McnFZ|AEhR?u4D~I=F<1(vRFg<&o zCar02*l>}WiHT;#!Q_qbfEj2BnrsC>_+=5$hhW6@>zf60teDCpf{R;{{sgu z1h0K7VAg5>B8j;gU@)kdZYK?l{9znn{TueMuTG1_d9n=i6N5KFzV6SI`T SG@Ho8_ob_kCj2kdNjE3r=Wq=G diff --git a/people.html b/people.html index b3d0af8e..57afc0d4 100644 --- a/people.html +++ b/people.html @@ -159,7 +159,7 @@

                    Blog Posts

                    • Best of both worlds: Combining Qt Designer and magicgui
                      • -
                    • Getting started with Mambaforge and Python
                      • +
                    • Getting started with ~~Mamba~~*Miniforge and Python
                    • Using GPU-accelerated image processing on the TUD HPC cluster
                    • Setting up GPU-accelerated image processing on the TUD HPC cluster
                    • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                      • diff --git a/robert_haase/browsing_idr/browse_idr.html b/robert_haase/browsing_idr/browse_idr.html index 00a1cfc7..0a68e0d8 100644 --- a/robert_haase/browsing_idr/browse_idr.html +++ b/robert_haase/browsing_idr/browse_idr.html @@ -157,7 +157,7 @@

                      Blog Posts

                      • Best of both worlds: Combining Qt Designer and magicgui
                        • -
                      • Getting started with Mambaforge and Python
                        • +
                      • Getting started with ~~Mamba~~*Miniforge and Python
                      • Using GPU-accelerated image processing on the TUD HPC cluster
                      • Setting up GPU-accelerated image processing on the TUD HPC cluster
                      • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                        • diff --git a/robert_haase/browsing_idr/readme.html b/robert_haase/browsing_idr/readme.html index bb6c42dd..c847397f 100644 --- a/robert_haase/browsing_idr/readme.html +++ b/robert_haase/browsing_idr/readme.html @@ -159,7 +159,7 @@

                        Blog Posts

                        • Best of both worlds: Combining Qt Designer and magicgui
                          • -
                        • Getting started with Mambaforge and Python
                          • +
                        • Getting started with ~~Mamba~~*Miniforge and Python
                        • Using GPU-accelerated image processing on the TUD HPC cluster
                        • Setting up GPU-accelerated image processing on the TUD HPC cluster
                        • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                          • diff --git a/robert_haase/clesperanto_google_colab/readme.html b/robert_haase/clesperanto_google_colab/readme.html index f3236495..1bc07628 100644 --- a/robert_haase/clesperanto_google_colab/readme.html +++ b/robert_haase/clesperanto_google_colab/readme.html @@ -159,7 +159,7 @@

                          Blog Posts

                          • Best of both worlds: Combining Qt Designer and magicgui
                            • -
                          • Getting started with Mambaforge and Python
                            • +
                          • Getting started with ~~Mamba~~*Miniforge and Python
                          • Using GPU-accelerated image processing on the TUD HPC cluster
                          • Setting up GPU-accelerated image processing on the TUD HPC cluster
                          • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                            • diff --git a/robert_haase/cupy_cucim/cupy_cucim.html b/robert_haase/cupy_cucim/cupy_cucim.html index 6deeec46..391fe03f 100644 --- a/robert_haase/cupy_cucim/cupy_cucim.html +++ b/robert_haase/cupy_cucim/cupy_cucim.html @@ -157,7 +157,7 @@

                            Blog Posts

                            • Best of both worlds: Combining Qt Designer and magicgui
                              • -
                            • Getting started with Mambaforge and Python
                              • +
                            • Getting started with ~~Mamba~~*Miniforge and Python
                            • Using GPU-accelerated image processing on the TUD HPC cluster
                            • Setting up GPU-accelerated image processing on the TUD HPC cluster
                            • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                              • diff --git a/robert_haase/cupy_cucim/readme.html b/robert_haase/cupy_cucim/readme.html index 5f7ce213..e8e8864a 100644 --- a/robert_haase/cupy_cucim/readme.html +++ b/robert_haase/cupy_cucim/readme.html @@ -159,7 +159,7 @@

                              Blog Posts

                              • Best of both worlds: Combining Qt Designer and magicgui
                                • -
                              • Getting started with Mambaforge and Python
                                • +
                              • Getting started with ~~Mamba~~*Miniforge and Python
                              • Using GPU-accelerated image processing on the TUD HPC cluster
                              • Setting up GPU-accelerated image processing on the TUD HPC cluster
                              • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                • diff --git a/robert_haase/ms_build_tools/readme.html b/robert_haase/ms_build_tools/readme.html index 3168bb6f..2fb4cb0f 100644 --- a/robert_haase/ms_build_tools/readme.html +++ b/robert_haase/ms_build_tools/readme.html @@ -159,7 +159,7 @@

                                Blog Posts

                                • Best of both worlds: Combining Qt Designer and magicgui
                                  • -
                                • Getting started with Mambaforge and Python
                                  • +
                                • Getting started with ~~Mamba~~*Miniforge and Python
                                • Using GPU-accelerated image processing on the TUD HPC cluster
                                • Setting up GPU-accelerated image processing on the TUD HPC cluster
                                • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                  • diff --git a/robert_haase/readme.html b/robert_haase/readme.html index 5292e16f..58418b76 100644 --- a/robert_haase/readme.html +++ b/robert_haase/readme.html @@ -159,7 +159,7 @@

                                  Blog Posts

                                  • Best of both worlds: Combining Qt Designer and magicgui
                                    • -
                                  • Getting started with Mambaforge and Python
                                    • +
                                  • Getting started with ~~Mamba~~*Miniforge and Python
                                  • Using GPU-accelerated image processing on the TUD HPC cluster
                                  • Setting up GPU-accelerated image processing on the TUD HPC cluster
                                  • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                    • diff --git a/robert_haase/stardist_gpu/readme.html b/robert_haase/stardist_gpu/readme.html index 0e2eefcd..ee42c747 100644 --- a/robert_haase/stardist_gpu/readme.html +++ b/robert_haase/stardist_gpu/readme.html @@ -159,7 +159,7 @@

                                    Blog Posts

                                    • Best of both worlds: Combining Qt Designer and magicgui
                                      • -
                                    • Getting started with Mambaforge and Python
                                      • +
                                    • Getting started with ~~Mamba~~*Miniforge and Python
                                    • Using GPU-accelerated image processing on the TUD HPC cluster
                                    • Setting up GPU-accelerated image processing on the TUD HPC cluster
                                    • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                      • diff --git a/robert_haase/why_we_blog/readme.html b/robert_haase/why_we_blog/readme.html index ad0079fa..317e735d 100644 --- a/robert_haase/why_we_blog/readme.html +++ b/robert_haase/why_we_blog/readme.html @@ -159,7 +159,7 @@

                                      Blog Posts

                                      • Best of both worlds: Combining Qt Designer and magicgui
                                        • -
                                      • Getting started with Mambaforge and Python
                                        • +
                                      • Getting started with ~~Mamba~~*Miniforge and Python
                                      • Using GPU-accelerated image processing on the TUD HPC cluster
                                      • Setting up GPU-accelerated image processing on the TUD HPC cluster
                                      • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                        • diff --git a/ryan_savill/01_intro_to_python/readme.html b/ryan_savill/01_intro_to_python/readme.html index bb330838..dbdc97ca 100644 --- a/ryan_savill/01_intro_to_python/readme.html +++ b/ryan_savill/01_intro_to_python/readme.html @@ -159,7 +159,7 @@

                                        Blog Posts

                                        • Best of both worlds: Combining Qt Designer and magicgui
                                          • -
                                        • Getting started with Mambaforge and Python
                                          • +
                                        • Getting started with ~~Mamba~~*Miniforge and Python
                                        • Using GPU-accelerated image processing on the TUD HPC cluster
                                        • Setting up GPU-accelerated image processing on the TUD HPC cluster
                                        • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                          • diff --git a/ryan_savill/02_intro_to_skimage/Introduction to Image Analysis Basics in Python with Scikit Image.html b/ryan_savill/02_intro_to_skimage/Introduction to Image Analysis Basics in Python with Scikit Image.html index 57ddad35..e815205d 100644 --- a/ryan_savill/02_intro_to_skimage/Introduction to Image Analysis Basics in Python with Scikit Image.html +++ b/ryan_savill/02_intro_to_skimage/Introduction to Image Analysis Basics in Python with Scikit Image.html @@ -157,7 +157,7 @@

                                          Blog Posts

                                          • Best of both worlds: Combining Qt Designer and magicgui
                                            • -
                                          • Getting started with Mambaforge and Python
                                            • +
                                          • Getting started with ~~Mamba~~*Miniforge and Python
                                          • Using GPU-accelerated image processing on the TUD HPC cluster
                                          • Setting up GPU-accelerated image processing on the TUD HPC cluster
                                          • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                            • diff --git a/ryan_savill/02_intro_to_skimage/readme.html b/ryan_savill/02_intro_to_skimage/readme.html index 1d2e3e35..a57f10ec 100644 --- a/ryan_savill/02_intro_to_skimage/readme.html +++ b/ryan_savill/02_intro_to_skimage/readme.html @@ -159,7 +159,7 @@

                                            Blog Posts

                                            • Best of both worlds: Combining Qt Designer and magicgui
                                              • -
                                            • Getting started with Mambaforge and Python
                                              • +
                                            • Getting started with ~~Mamba~~*Miniforge and Python
                                            • Using GPU-accelerated image processing on the TUD HPC cluster
                                            • Setting up GPU-accelerated image processing on the TUD HPC cluster
                                            • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                              • diff --git a/ryan_savill/03_background_subtraction/background subtraction in scipy and scikit image.html b/ryan_savill/03_background_subtraction/background subtraction in scipy and scikit image.html index 4044d79c..8afa472f 100644 --- a/ryan_savill/03_background_subtraction/background subtraction in scipy and scikit image.html +++ b/ryan_savill/03_background_subtraction/background subtraction in scipy and scikit image.html @@ -157,7 +157,7 @@

                                              Blog Posts

                                              • Best of both worlds: Combining Qt Designer and magicgui
                                                • -
                                              • Getting started with Mambaforge and Python
                                                • +
                                              • Getting started with ~~Mamba~~*Miniforge and Python
                                              • Using GPU-accelerated image processing on the TUD HPC cluster
                                              • Setting up GPU-accelerated image processing on the TUD HPC cluster
                                              • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                                • diff --git a/ryan_savill/03_background_subtraction/readme.html b/ryan_savill/03_background_subtraction/readme.html index dfc629be..0cb186a7 100644 --- a/ryan_savill/03_background_subtraction/readme.html +++ b/ryan_savill/03_background_subtraction/readme.html @@ -159,7 +159,7 @@

                                                Blog Posts

                                                • Best of both worlds: Combining Qt Designer and magicgui
                                                  • -
                                                • Getting started with Mambaforge and Python
                                                  • +
                                                • Getting started with ~~Mamba~~*Miniforge and Python
                                                • Using GPU-accelerated image processing on the TUD HPC cluster
                                                • Setting up GPU-accelerated image processing on the TUD HPC cluster
                                                • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                                  • diff --git a/ryan_savill/principal_feature_analysis/readme.html b/ryan_savill/principal_feature_analysis/readme.html index 69fac80f..5b8bae0c 100644 --- a/ryan_savill/principal_feature_analysis/readme.html +++ b/ryan_savill/principal_feature_analysis/readme.html @@ -159,7 +159,7 @@

                                                  Blog Posts

                                                  • Best of both worlds: Combining Qt Designer and magicgui
                                                    • -
                                                  • Getting started with Mambaforge and Python
                                                    • +
                                                  • Getting started with ~~Mamba~~*Miniforge and Python
                                                  • Using GPU-accelerated image processing on the TUD HPC cluster
                                                  • Setting up GPU-accelerated image processing on the TUD HPC cluster
                                                  • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                                    • diff --git a/ryan_savill/readme.html b/ryan_savill/readme.html index a528ddfc..412ffe31 100644 --- a/ryan_savill/readme.html +++ b/ryan_savill/readme.html @@ -159,7 +159,7 @@

                                                    Blog Posts

                                                    • Best of both worlds: Combining Qt Designer and magicgui
                                                      • -
                                                    • Getting started with Mambaforge and Python
                                                      • +
                                                    • Getting started with ~~Mamba~~*Miniforge and Python
                                                    • Using GPU-accelerated image processing on the TUD HPC cluster
                                                    • Setting up GPU-accelerated image processing on the TUD HPC cluster
                                                    • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                                      • diff --git a/search.html b/search.html index c036beb9..6f80471b 100644 --- a/search.html +++ b/search.html @@ -158,7 +158,7 @@

                                                      Blog Posts

                                                      • Best of both worlds: Combining Qt Designer and magicgui
                                                        • -
                                                      • Getting started with Mambaforge and Python
                                                        • +
                                                      • Getting started with ~~Mamba~~*Miniforge and Python
                                                      • Using GPU-accelerated image processing on the TUD HPC cluster
                                                      • Setting up GPU-accelerated image processing on the TUD HPC cluster
                                                      • Running Deep-Learning Scripts in the BiA-PoL Omero Server
                                                        • diff --git a/searchindex.js b/searchindex.js index 0ed647d7..5fdcee8e 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["imprint", "intro", "johannes_mueller/Readme", "johannes_mueller/anaconda_getting_started/Readme", "johannes_mueller/entry_sphinx/Readme", "johannes_mueller/entry_user_inter/Readme", "johannes_mueller/entry_user_interf2/Readme", "johannes_mueller/qtdesigner_and_magicgui/Readme", "johannes_mueller/qtdesigner_and_magicgui/example/demo", "mara_lampert/getting_started_with_mambaforge_and_python/readme", "mara_lampert/readme", "marcelo_zoccoler/entry_user_interf3/Readme", "marcelo_zoccoler/entry_user_interf4/Readme", "marcelo_zoccoler/jamovi/jamovi", "marcelo_zoccoler/mini_sabbatical_rike/Readme", "marcelo_zoccoler/omero_scripts/readme", "marcelo_zoccoler/readme", "people", "robert_haase/browsing_idr/browse_idr", "robert_haase/browsing_idr/readme", 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[1, 35], "rike": [1, 14], "doc": [1, 4, 12], "who": [1, 16, 19, 30, 31], "had": [1, 10, 14, 27, 33], "just": [1, 2, 3, 7, 9, 11, 12, 13, 14, 15, 18, 19, 23, 25, 27, 28, 29, 30, 31, 32, 35], "finish": [1, 2, 3, 4, 5, 9, 14, 15], "her": 1, "phd": [1, 2, 14, 16], "univers": [1, 3, 14, 18, 19, 33], "clinic": 1, "she": 1, "spent": [1, 21], "two": [1, 4, 6, 7, 9, 12, 13, 15, 25, 27, 28, 29, 30, 31], "week": [1, 14], "train": [1, 24, 25], "period": 1, "johann": [1, 3, 4, 5, 6, 9, 12, 14, 17], "m\u00fcller": [1, 3, 4, 5, 6, 12, 17], "specif": [1, 9, 11, 12, 14, 18, 19, 21, 22, 25, 27, 30, 31, 35], "control": [1, 6, 7], "effect": [1, 11, 30, 31, 32], "decemb": [1, 12, 19], "15th": [1, 12], "2021": [1, 2, 4, 5, 6, 11, 12, 13, 14, 16, 19, 20, 22, 23, 25, 26, 27, 29, 31, 32], "last": [1, 4, 7, 12, 13, 14, 25, 27, 30, 31, 35], "seri": [1, 11, 27, 30, 31, 32], "teach": [1, 11, 12, 16, 26, 27], "turn": [1, 4, 5, 6, 7, 11, 16, 18, 19, 21, 22, 24, 30, 31, 32], "your": [1, 3, 7, 9, 15, 19, 20, 23, 25, 28, 29, 32, 33], "napari": [1, 3, 5, 6, 7, 8, 14, 16, 24, 35], "widget": [1, 5, 8, 11, 12], "plugin": [1, 5, 6, 7, 9, 11, 13, 14, 15, 16, 26, 34, 35], "publish": [1, 18, 19, 32], "pypi": 1, "everyon": [1, 3, 12, 14], "access": [1, 7, 11, 12, 18, 19, 21, 22, 26, 27, 33], "benefit": [1, 30, 31], "from": [1, 3, 4, 5, 6, 8, 9, 13, 14, 15, 16, 18, 19, 20, 21, 22, 24, 25, 27, 28, 29, 30, 31, 32, 34, 35], "find": [1, 3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 16, 19, 25, 27, 28, 29, 30, 31, 32, 33, 35], "left": [1, 3, 4, 7, 12, 13, 21, 25], "sidebar": [1, 7], "enjoi": [1, 10, 26], "deutsch": 1, "forschungsgemeinschaft": 1, "german": 1, "foundat": 1, "germani": 1, "s": [1, 3, 4, 5, 6, 7, 11, 12, 13, 14, 15, 18, 19, 20, 23, 27, 28, 29, 30, 31, 32, 33, 35], "strategi": [1, 12, 35], "exc2068": 1, "imprint": [1, 2, 10, 17, 24, 26, 27, 29, 30, 31], "hi": [2, 10, 14, 16, 21, 28, 30, 34, 35], "my": [2, 3, 5, 9, 10, 11, 14, 16, 24, 27, 28, 29, 30, 31, 34, 35], "i": [2, 3, 4, 5, 6, 9, 10, 11, 12, 13, 14, 16, 20, 23, 24, 25, 27, 28, 29, 30, 31, 32, 33, 34, 35], "origin": [2, 13, 15, 28, 29, 30, 31, 32], "No": [2, 3, 11, 23, 32, 35], "code": [2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 18, 19, 20, 22, 27, 28, 29, 30, 31, 32, 35], "biologi": [2, 10, 26, 33, 35], "classic": 2, "laser": 2, "calcul": [2, 7], "stuff": 2, "like": [2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 18, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 32, 33, 34, 35], "As": [2, 3, 6, 7, 11, 15, 22, 25, 26, 28, 29, 32], "start": [2, 6, 7, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29], "progress": [2, 15], "through": [2, 3, 4, 5, 6, 7, 9, 12, 14, 15, 18, 19, 22, 27, 30, 31, 32], "academ": 2, "cycl": 2, "began": 2, "interest": [2, 5, 6, 11, 12, 13, 14, 19, 20, 27], "thermograph": 2, "imag": [2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 15, 16, 18, 24, 26, 30, 31], "breast": 2, "cancer": [2, 24], "lesion": 2, "master": [2, 4, 16, 32, 33], "thesi": [2, 32], "micro": 2, "environment": 2, "featur": [2, 3, 7, 28, 29, 30, 31, 33, 35], "head": [2, 18, 19, 24], "neck": 2, "tumor": [2, 24], "mice": [2, 14], "dure": [2, 3, 9, 10, 14, 16, 18, 19, 35], "got": [2, 14, 15, 27], "learn": [2, 4, 9, 10, 12, 24, 25, 30, 31, 32, 33, 35], "biolog": 2, "system": [2, 5, 9, 20, 22, 27, 35], "fascin": 2, "overwhelm": 2, "complex": [2, 6, 7, 11], "varianc": [2, 32], "approach": [2, 6, 11, 35], "address": [2, 6, 12, 15, 20, 35], "particular": [2, 7, 13, 23], "recent": [2, 13, 16, 25], "larg": [2, 4, 7, 12, 21, 22, 27, 30, 31, 35], "scale": [2, 7], "microscop": [2, 7, 16], "20000": 2, "x": [2, 5, 6, 18, 19, 28, 29, 32, 35], "pixel": [2, 28, 29, 30, 31], "wai": [2, 3, 5, 6, 7, 11, 12, 14, 18, 19, 26, 27, 30, 31, 32, 35], "would": [2, 4, 6, 7, 9, 10, 12, 13, 20, 21, 22, 27, 28, 29, 32, 34, 35], "reproduc": [2, 35], "time": [2, 3, 4, 5, 7, 11, 12, 14, 18, 19, 20, 21, 22, 23, 28, 29, 32, 34, 35], "wise": [2, 6], "feasibl": [2, 34], "enter": [2, 3, 4, 6, 9, 12, 20, 25, 27, 35], "becam": [2, 10], "part": [2, 7, 10, 14, 18, 19, 25, 27, 28, 29, 30, 31, 32, 34, 35], "pol": [2, 10, 16, 24, 35], "task": [2, 5, 7, 34, 35], "tailor": 2, "workflow": [2, 3, 4, 14, 20, 28, 29, 34, 35], "fellow": 2, "educ": [2, 30, 31], "other": [2, 3, 5, 7, 9, 11, 12, 13, 14, 20, 22, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35], "empow": 2, "them": [2, 3, 6, 7, 9, 11, 12, 13, 15, 18, 19, 25, 28, 29, 30, 31, 32, 35], "own": [2, 3, 6, 9, 12, 15, 25, 28, 29, 34, 35], "new": [2, 4, 5, 6, 7, 11, 12, 13, 14, 15, 19, 21, 25, 26, 27, 28, 29, 34, 35], "method": [2, 5, 6, 11, 12, 18, 19, 27, 28, 29, 30, 31, 32], "thei": [2, 6, 10, 12, 13, 14, 15, 19, 27, 28, 29, 35], "deploi": [2, 35], "mani": [2, 5, 6, 7, 11, 13, 21, 22, 30, 31, 32, 35], "possibl": [2, 6, 11, 13, 14, 21, 22], "gui": [2, 7, 16], "python": [2, 4, 10, 13, 16, 21, 22, 23, 24, 30, 31, 32, 34, 35], "get": [2, 6, 7, 10, 11, 12, 13, 14, 18, 19, 20, 21, 22, 25, 26, 28, 29, 30, 31, 32, 34], "advanc": [2, 5, 16, 33, 34, 35], "qt": [2, 5, 11, 12], "design": [2, 11, 12, 16], "autom": [2, 12, 19, 32], "document": [2, 3, 11, 12, 13, 34, 35], "sphinx": [2, 12], "anaconda": [2, 4, 5, 6, 7, 12, 27, 28, 29, 30, 31], "bia": [2, 10, 16, 24, 26, 35], "websit": [2, 10, 11, 12, 13, 16, 18, 19, 23, 24, 25], "twitter": [2, 10, 16, 24, 33], "note": [3, 4, 6, 7, 9, 11, 12, 18, 19, 22, 23, 25, 34, 35], "instruct": [3, 9, 12, 15, 20, 22, 25, 34, 35], "blog": [3, 4, 5, 6, 7, 9, 11, 12, 19, 20, 22, 23, 27, 29, 30, 31, 33], "post": [3, 4, 7, 9, 11, 12, 19, 20, 22, 23, 27, 28, 29, 30, 31], "outdat": 3, "updat": [3, 6, 9, 10, 11, 19, 33], "cover": [3, 4, 5, 6, 7, 11, 12, 27, 33], "all": [3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 18, 19, 22, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35], "necessari": [3, 6, 9, 12, 23, 25, 32, 35], "step": [3, 6, 9, 11, 12, 13, 15, 25, 27, 28, 29, 30, 31, 32], "download": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 18, 25, 27, 28, 29, 35], "setup": [3, 9, 12, 34, 35], "machin": [3, 24, 35], "guid": [3, 9, 13], "readi": [3, 4, 7, 9, 12, 13], "befor": [3, 4, 6, 7, 11, 12, 13, 15, 21, 22, 25, 27, 30, 31, 32, 34, 35], "do": [3, 4, 5, 6, 7, 9, 11, 12, 13, 14, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35], "need": [3, 4, 6, 7, 9, 11, 12, 15, 18, 19, 20, 21, 22, 23, 25, 26, 28, 29, 30, 31, 32, 35], "first": [3, 4, 5, 6, 9, 10, 12, 14, 18, 19, 20, 27, 28, 29, 30, 31, 32, 34], "place": [3, 6, 7, 11, 15], "bit": [3, 4, 6, 7, 11, 19, 23, 27, 28, 29, 30, 31], "detail": [3, 7, 25, 27, 28, 29, 34], "here": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 19, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 35], "A": [3, 4, 7, 9, 12, 13, 14, 15, 18, 19, 20, 21, 22, 25, 28, 29, 32, 35], "few": [3, 4, 5, 6, 7, 11, 12, 15, 27, 28, 29, 30, 31, 32, 35], "kei": [3, 7, 15, 18, 19, 32], "program": [3, 5, 6, 9, 13, 18, 19, 24, 25, 27, 28, 29, 30, 31, 33, 35], "languag": [3, 4, 9, 13, 14, 30, 31, 35], "simplifi": [3, 11], "collabor": [3, 20, 24, 26], "between": [3, 9, 10, 12, 14, 25, 26, 30, 31, 35], "scientist": [3, 10, 14, 19, 24, 33], "disciplin": 3, "write": [3, 4, 6, 7, 9, 11, 12, 22, 27, 28, 29, 30, 31, 35], "script": [3, 5, 6, 12, 34], "modul": [3, 4, 10, 11, 12, 13], "share": [3, 12, 14, 18, 19, 21, 22, 25, 26, 33, 34, 35], "everybodi": 3, "els": [3, 5, 7, 11, 12, 23, 28, 29, 30, 31], "while": [3, 6, 7, 9, 23, 25, 32, 34], "enabl": [3, 11, 12, 13, 20], "project": [3, 4, 6, 9, 12, 14, 15, 18, 19, 27, 28, 29, 30, 31, 32, 35], "entir": [3, 7], "level": [3, 4, 7, 11, 12, 15], "sometim": [3, 4, 5, 6, 11, 28, 29, 30, 31], "tricki": [3, 7, 23], "right": [3, 6, 7, 8, 11, 12, 13, 15, 19, 23, 25, 32, 34, 35], "version": [3, 9, 11, 20, 21, 25, 27, 35], "make": [3, 5, 6, 7, 9, 11, 12, 18, 19, 20, 21, 22, 25, 27, 28, 29, 30, 31, 34, 35], "run": [3, 5, 6, 7, 9, 12, 13, 21, 22, 25, 27, 28, 29, 34], "each": [3, 7, 11, 12, 27, 28, 29, 30, 31, 32], "ensur": [3, 9, 35], "compat": [3, 9, 21, 22, 27], "allow": [3, 4, 5, 6, 7, 9, 13, 15, 18, 19, 20, 27, 30, 31, 33], "call": [3, 4, 6, 7, 9, 12, 13, 15, 16, 18, 19, 27, 28, 29, 30, 31, 32, 33], "It": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 19, 20, 23, 27, 28, 29, 30, 31, 33, 34, 35], "recommend": [3, 4, 5, 6, 9, 14, 21, 22, 25, 32, 35], "one": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 19, 20, 22, 27, 28, 29, 30, 31, 32, 34, 35], "everi": [3, 4, 5, 6, 7, 9, 10, 11, 13, 20, 27, 28, 29, 32, 33], "text": [3, 4, 6, 15, 28, 30, 32, 35], "public": [3, 4, 12, 18, 19, 26], "much": [3, 4, 7, 13, 27, 28, 29, 30, 31, 32, 33, 34, 35], "easier": [3, 6, 22, 23, 27, 30, 31, 33, 34], "maintain": [3, 9, 11], "relev": [3, 14], "given": [3, 5, 19, 30, 31], "tutori": [3, 4, 6, 7, 9, 11, 12, 13, 15, 20, 22, 27], "done": [3, 4, 5, 6, 7, 11, 12, 13, 15, 16, 28, 29, 32, 34], "window": [3, 5, 6, 7, 8, 11, 12, 15, 18, 19, 24, 27, 35], "should": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 25, 27, 28, 29, 30, 31, 32, 34, 35], "equal": [3, 30, 31, 32], "mac": 3, "os": [3, 4, 5, 6, 35], "order": [3, 4, 5, 6, 7, 11, 12, 18, 19, 20, 21, 22, 25, 28, 29, 35], "go": [3, 4, 5, 6, 7, 9, 11, 12, 13, 18, 19, 20, 22, 23, 25, 27, 28, 29, 34, 35], "http": [3, 4, 9, 11, 12, 15, 18, 19, 20, 21, 22, 23, 26, 35], "www": [3, 18, 19, 35], "com": [3, 4, 9, 12, 18, 19, 23, 35], "product": [3, 26], "individu": [3, 28, 29], "click": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 19, 20, 21, 23, 25, 34, 35], "when": [3, 4, 7, 9, 11, 12, 15, 16, 19, 20, 23, 25, 27, 28, 29, 30, 31, 32, 33], "ha": [3, 4, 5, 6, 7, 11, 12, 15, 16, 20, 23, 27, 28, 29, 30, 31, 32, 35], "follow": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 18, 19, 20, 21, 22, 23, 25, 27, 32, 34, 35], "next": [3, 5, 6, 9, 11, 12, 13, 15, 18, 19, 25, 28, 29, 30, 31], "agre": [3, 9], "now": [3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 15, 16, 27, 28, 29, 30, 31, 32, 33, 34, 35], "choic": [3, 4, 5, 7, 27, 32], "whether": [3, 35], "user": [3, 7, 9, 13, 15, 25, 27, 28, 30, 31, 34], "me": [3, 9, 10, 12, 14, 16, 20, 23, 27, 30, 31, 32], "requir": [3, 7, 9, 12, 21, 23, 35], "administr": [3, 9, 25], "privileg": [3, 25], "caus": 3, "troubl": 3, "same": [3, 5, 6, 7, 11, 12, 15, 27, 28, 29, 30, 31, 32, 34, 35], "too": [3, 7, 9, 11, 13, 26, 27, 28, 29, 34], "default": [3, 4, 6, 7, 9, 12, 20, 21, 25, 28, 29, 34, 35], "locat": [3, 4, 6, 7, 9, 12, 19, 20, 34], "ask": [3, 9, 12, 15, 20, 25, 30, 31, 34, 35], "add": [3, 4, 5, 6, 7, 9, 11, 12, 13, 28, 29, 30, 31, 35], "anaconda3": [3, 6, 30], "path": [3, 4, 6, 7, 9, 11, 12, 25, 34], "variabl": [3, 7, 11, 12, 13, 18, 19, 25, 27, 28, 29, 32], "below": [3, 5, 7, 10, 11, 12, 13, 15, 16, 18, 19, 27, 28, 29, 32, 33, 34, 35], "until": [3, 4, 5, 21, 30, 31, 32, 35], "arriv": [3, 9], "box": [3, 6, 7, 12, 13, 35], "what": [3, 4, 5, 7, 9, 11, 14, 20, 26, 27, 28, 29, 30, 31, 32, 33, 34], "anywai": 3, "exit": [3, 9], "great": [3, 5, 6, 7, 9, 11, 12, 27, 28, 29, 32], "although": [3, 4, 11, 12, 14], "graphic": [3, 5, 6, 7, 11, 12, 20, 21, 22, 25, 34, 35], "interfac": [3, 7, 13, 15, 18, 19, 20, 34, 35], "rather": [3, 4, 11, 30, 31, 34], "command": [3, 4, 5, 6, 7, 9, 11, 12, 15, 21, 22, 23, 25, 27, 28, 29, 32, 35], "line": [3, 4, 5, 6, 7, 9, 11, 12, 15, 21, 22, 25, 27, 28, 29, 30, 31, 32, 35], "henc": [3, 4, 7], "stick": [3, 5, 32], "rest": [3, 28, 29], "concept": [3, 5, 14, 30, 31, 32], "open": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 18, 24, 25, 27], "prompt": [3, 5, 6, 9, 12], "simpli": [3, 6, 7, 12, 14], "hit": [3, 9, 11, 12, 20, 23, 25], "button": [3, 5, 6, 7, 9, 11, 12, 13, 15, 20, 25, 27, 34, 35], "type": [3, 5, 6, 7, 9, 11, 12, 13, 15, 18, 19, 20, 32, 35], "cmd": [3, 9, 13, 27], "spawn": [3, 34, 35], "launchpad": 3, "icon": [3, 9], "dock": [3, 12], "termin": [3, 7, 9, 12], "search": [3, 4, 6, 9, 19, 25, 27, 28, 29], "field": [3, 11, 12, 13, 14, 16, 18, 19, 20, 26, 35], "linux": [3, 22, 35], "typic": [3, 4, 7, 12, 18, 19, 23, 35], "applic": [3, 5, 6, 15, 18, 19, 35], "list": [3, 4, 6, 12, 13, 21, 30, 31, 32, 34, 35], "hand": [3, 7, 25], "side": [3, 11, 12, 13, 15, 20, 28, 29], "panel": [3, 9, 15], "activ": [3, 4, 5, 6, 9, 12, 13, 15, 18, 19, 23, 25, 27, 28, 29, 34], "prefix": [3, 9], "base": [3, 4, 5, 6, 9, 11, 12, 19, 22, 24, 28, 29, 32, 33], "ani": [3, 6, 7, 9, 11, 12, 15, 26, 27, 28, 29, 30, 31, 32, 34, 35], "reason": [3, 5, 9, 11, 13, 34, 35], "did": [3, 7, 12, 13, 27], "option": [3, 4, 5, 9, 11, 12, 13, 15, 25, 27, 28, 29, 34, 35], "abov": [3, 4, 5, 6, 7, 11, 15, 18, 19, 27, 28, 29, 30, 31, 32, 34, 35], "select": [3, 4, 6, 7, 11, 12, 13, 15, 19, 20, 32, 34, 35], "similarli": [3, 6, 7, 11, 27, 32], "exist": [3, 4, 13, 25, 34, 35], "platform": [3, 5, 6, 11, 12, 13, 35], "also": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 32], "directli": [3, 4, 5, 6, 7, 28, 29], "continu": [3, 11, 21, 22, 25], "normal": [3, 13, 18, 19, 23, 27, 35], "strongli": [3, 35], "never": [3, 4, 9, 14, 28, 29], "happen": [3, 5, 9, 27, 28, 29, 34], "incompat": [3, 9, 27], "occur": [3, 9], "than": [3, 10, 11, 12, 13, 27, 28, 29, 30, 31, 32, 34, 35], "problem": [3, 4, 9, 27], "delet": [3, 12, 13, 34], "recreat": [3, 9], "over": [3, 19, 24, 27, 28, 29, 30, 31], "howev": [3, 5, 6, 12, 25, 29, 30, 31, 33, 35], "reinstal": [3, 9, 27], "take": [3, 4, 5, 11, 13, 18, 19, 21, 22, 25, 28, 29, 30, 31, 32, 33, 34, 35], "With": [3, 4, 6, 12, 20, 27, 32], "my_first_env": [3, 9], "3": [3, 5, 6, 9, 12, 13, 15, 18, 19, 21, 22, 25, 27, 28, 29, 30, 31, 32], "9": [3, 6, 9, 21, 27, 32, 35], "basic": [3, 6, 7, 22, 25, 30, 31, 33, 35], "ship": [3, 6], "along": [3, 7, 12, 32], "proce": [3, 4, 5, 9], "y": [3, 4, 5, 6, 9, 12, 18, 19, 21, 32], "n": [3, 4, 5, 6, 9, 12, 20, 27, 35], "confirm": [3, 9, 12], "To": [3, 4, 6, 7, 9, 12, 19, 21, 25, 27, 28, 29, 30, 31, 34, 35], "lead": [3, 4, 9, 11, 12, 23, 35], "appear": [3, 5, 9, 12, 13, 15, 23], "begin": [3, 7, 9, 30, 31], "That": [3, 4, 5, 11, 15], "actual": [3, 4, 5, 7, 14, 27, 28, 29, 35], "process": [3, 5, 6, 7, 9, 11, 12, 24, 25, 26, 28, 29, 30, 31], "still": [3, 5, 7, 11, 13, 14, 28, 29, 30, 31, 32, 34], "programm": [3, 5, 6, 11, 12, 13, 23], "edit": [3, 4, 12, 25], "For": [3, 4, 5, 6, 7, 9, 11, 12, 13, 14, 15, 18, 19, 20, 21, 22, 25, 27, 28, 29, 30, 31, 32, 34, 35], "convieni": 3, "proper": [3, 4, 28, 29], 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