{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":800227109,"defaultBranch":"main","name":"sardyne","ownerLogin":"BigDataBiology","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2024-05-14T00:00:01.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/38910137?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1718669173.0","currentOid":""},"activityList":{"items":[{"before":"b8845d57fae87eedce0de4f204adc3127ed283fa","after":"8f6647944934668c5edcad0704bf205b9ea018a2","ref":"refs/heads/main","pushedAt":"2024-09-15T04:30:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"MIN Add recap/stream links","shortMessageHtmlLink":"MIN Add recap/stream links"}},{"before":"9bfcc9942abd401540daf2ddaffad12880492472","after":"b8845d57fae87eedce0de4f204adc3127ed283fa","ref":"refs/heads/main","pushedAt":"2024-09-15T04:24:22.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"MIN RFCT Remove exploratory plot\n\n- Better variable names","shortMessageHtmlLink":"MIN RFCT Remove exploratory plot"}},{"before":"6abcba1a4b6643433079a63f0b81df2f558a0526","after":"9bfcc9942abd401540daf2ddaffad12880492472","ref":"refs/heads/main","pushedAt":"2024-09-10T00:05:45.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Use GMGCv1 as reference for z-scores","shortMessageHtmlLink":"ENH Use GMGCv1 as reference for z-scores"}},{"before":"d6979b7707ea804209c65f4b39aa3e19ab687f98","after":"6abcba1a4b6643433079a63f0b81df2f558a0526","ref":"refs/heads/main","pushedAt":"2024-09-06T08:04:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Update with video links","shortMessageHtmlLink":"DOC Update with video links"}},{"before":"6035cf3dfaa6eaa106c20c76ed10547f21b1431d","after":"d6979b7707ea804209c65f4b39aa3e19ab687f98","ref":"refs/heads/main","pushedAt":"2024-09-03T00:01:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Look at zscores of gene size per KO\n\nThis appears to vary less across different species","shortMessageHtmlLink":"ENH Look at zscores of gene size per KO"}},{"before":"60eed99a71b40b9abc6b4b089dee8eb0c8abac9c","after":"6035cf3dfaa6eaa106c20c76ed10547f21b1431d","ref":"refs/heads/main","pushedAt":"2024-08-13T00:07:01.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Document exploration","shortMessageHtmlLink":"DOC Document exploration"}},{"before":"ea3e880b1d77009013b9556e93eecb997b5887ec","after":"60eed99a71b40b9abc6b4b089dee8eb0c8abac9c","ref":"refs/heads/main","pushedAt":"2024-08-09T06:46:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Add recap/stream links","shortMessageHtmlLink":"DOC Add recap/stream links"}},{"before":"53468e0fa8c115f27b37ba11e5512f7ab9afec1c","after":"f6c83ccdc4970def6b95c1290479a6bd194e7a2c","ref":"refs/heads/wip","pushedAt":"2024-08-06T00:02:11.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"Merge branch 'main' into wip","shortMessageHtmlLink":"Merge branch 'main' into wip"}},{"before":"7b448dde21473ac6814928269b14ffd3b66540eb","after":"ea3e880b1d77009013b9556e93eecb997b5887ec","ref":"refs/heads/main","pushedAt":"2024-08-06T00:02:06.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Notes of today's stream","shortMessageHtmlLink":"DOC Notes of today's stream"}},{"before":"a4e7e4f6f1610ddd1c5df995c7a3c2bda8048e67","after":"7b448dde21473ac6814928269b14ffd3b66540eb","ref":"refs/heads/main","pushedAt":"2024-07-04T23:14:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Create output directories\n\nAdd better instructions to start project from scratch","shortMessageHtmlLink":"ENH Create output directories"}},{"before":"6abe994220bd1efb02945fcc57d4d3382525ad5f","after":"a4e7e4f6f1610ddd1c5df995c7a3c2bda8048e67","ref":"refs/heads/main","pushedAt":"2024-06-25T06:06:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Add video links","shortMessageHtmlLink":"DOC Add video links"}},{"before":"fba75ce4631b8049219c90e948c4aea41528a85e","after":"53468e0fa8c115f27b37ba11e5512f7ab9afec1c","ref":"refs/heads/wip","pushedAt":"2024-06-24T23:55:52.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Use Uniref100.KO as reference for KO size","shortMessageHtmlLink":"ENH Use Uniref100.KO as reference for KO size"}},{"before":"e8827d329720394e8dcfb3c7ba8fb85a071cdff8","after":"6abe994220bd1efb02945fcc57d4d3382525ad5f","ref":"refs/heads/main","pushedAt":"2024-06-24T23:54:31.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Notes on stream + installation\n\n- We now also use seaborn","shortMessageHtmlLink":"DOC Notes on stream + installation"}},{"before":"4cb43ab9740abe9fbf576087e84b7b6357eababe","after":"fba75ce4631b8049219c90e948c4aea41528a85e","ref":"refs/heads/wip","pushedAt":"2024-06-24T23:29:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Plot length by KO for all the genomes analysed","shortMessageHtmlLink":"ENH Plot length by KO for all the genomes analysed"}},{"before":"1a4467912d81a10852b5b2cfc8ec328565e5bae4","after":"e8827d329720394e8dcfb3c7ba8fb85a071cdff8","ref":"refs/heads/main","pushedAt":"2024-06-21T01:08:51.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"MIN Adapt plotting code to newer mutation counts","shortMessageHtmlLink":"MIN Adapt plotting code to newer mutation counts"}},{"before":"9375b5f2ed9daea1ad357ff444f1d404b4408117","after":"1a4467912d81a10852b5b2cfc8ec328565e5bae4","ref":"refs/heads/main","pushedAt":"2024-06-18T00:06:18.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Stream notes","shortMessageHtmlLink":"DOC Stream notes"}},{"before":null,"after":"4cb43ab9740abe9fbf576087e84b7b6357eababe","ref":"refs/heads/wip","pushedAt":"2024-06-18T00:06:13.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Length of ORF by KO","shortMessageHtmlLink":"ENH Length of ORF by KO"}},{"before":"e89239e23104e8ef5ec3186eda1f209ee19d9240","after":"9375b5f2ed9daea1ad357ff444f1d404b4408117","ref":"refs/heads/main","pushedAt":"2024-06-13T03:44:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Post links to videos","shortMessageHtmlLink":"ENH Post links to videos"}},{"before":"4f85c6c0d87b371f2cf198efb5104574d6534b6c","after":"e89239e23104e8ef5ec3186eda1f209ee19d9240","ref":"refs/heads/main","pushedAt":"2024-06-10T23:59:13.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Check false positives/negatives in KO space","shortMessageHtmlLink":"ENH Check false positives/negatives in KO space"}},{"before":"c93af2810fe1ed2f06627b390637fbac53c17222","after":"4f85c6c0d87b371f2cf198efb5104574d6534b6c","ref":"refs/heads/main","pushedAt":"2024-06-10T22:54:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Add video links","shortMessageHtmlLink":"DOC Add video links"}},{"before":"80b52b7aa91d97a9c3f1534342667a8584f7b7a5","after":"c93af2810fe1ed2f06627b390637fbac53c17222","ref":"refs/heads/main","pushedAt":"2024-06-07T06:23:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"MIN Update to newer simulation framework","shortMessageHtmlLink":"MIN Update to newer simulation framework"}},{"before":"1a6d6aeb5b73393daddb9a266a81846eb2e854af","after":"80b52b7aa91d97a9c3f1534342667a8584f7b7a5","ref":"refs/heads/main","pushedAt":"2024-06-04T00:03:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Tag output in gene_sizes/random_gene_sizes","shortMessageHtmlLink":"ENH Tag output in gene_sizes/random_gene_sizes"}},{"before":"75d6e1ba232bebce0633f69a1dab81e8abe3b937","after":"1a6d6aeb5b73393daddb9a266a81846eb2e854af","ref":"refs/heads/main","pushedAt":"2024-06-03T23:58:44.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Run simulation+measurement on multiple genomes","shortMessageHtmlLink":"ENH Run simulation+measurement on multiple genomes"}},{"before":"430a2b9b6230422d50eaa87fa19d7eba94ce0c37","after":"75d6e1ba232bebce0633f69a1dab81e8abe3b937","ref":"refs/heads/main","pushedAt":"2024-05-30T02:39:00.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Add links to videos","shortMessageHtmlLink":"DOC Add links to videos"}},{"before":"54c6dc8f8cb0bbc24bf52ff069da632d69510690","after":"430a2b9b6230422d50eaa87fa19d7eba94ce0c37","ref":"refs/heads/main","pushedAt":"2024-05-28T03:10:29.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Update stream notes\n\nBullet points for today, plans for next week","shortMessageHtmlLink":"DOC Update stream notes"}},{"before":"cfcc7d7f3a81fabb5f108e5275fb3f8ba08a7746","after":"54c6dc8f8cb0bbc24bf52ff069da632d69510690","ref":"refs/heads/main","pushedAt":"2024-05-21T23:58:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Write a few notes for next week","shortMessageHtmlLink":"DOC Write a few notes for next week"}},{"before":"770702a1bd2831643541fb6556f92d34e4f081fa","after":"cfcc7d7f3a81fabb5f108e5275fb3f8ba08a7746","ref":"refs/heads/main","pushedAt":"2024-05-21T23:43:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"MIN Link to videos","shortMessageHtmlLink":"MIN Link to videos"}},{"before":"93b6dd1eb346477453014ffc5156cf934ed9fb9d","after":"770702a1bd2831643541fb6556f92d34e4f081fa","ref":"refs/heads/main","pushedAt":"2024-05-21T23:30:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"ENH Explore a higher number of mutations","shortMessageHtmlLink":"ENH Explore a higher number of mutations"}},{"before":"26507726680c922f634abf9aa71ba746bd63939b","after":"93b6dd1eb346477453014ffc5156cf934ed9fb9d","ref":"refs/heads/main","pushedAt":"2024-05-21T00:02:11.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC Notes on the stream\n\nAlso, fix dates for previous streams","shortMessageHtmlLink":"DOC Notes on the stream"}},{"before":"85cf732051d5f52728c2b98b6e485d010d61283b","after":"26507726680c922f634abf9aa71ba746bd63939b","ref":"refs/heads/main","pushedAt":"2024-05-20T23:09:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luispedro","name":"Luis Pedro Coelho","path":"/luispedro","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79334?s=80&v=4"},"commit":{"message":"DOC More information about sardyne project","shortMessageHtmlLink":"DOC More information about sardyne project"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xNVQwNDozMDozMy4wMDAwMDBazwAAAAS2hgvm","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xNVQwNDozMDozMy4wMDAwMDBazwAAAAS2hgvm","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNS0yMFQyMzowOTo0OS4wMDAwMDBazwAAAARPQyly"}},"title":"Activity ยท BigDataBiology/sardyne"}