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Dear all,
I am trying to use this interesting tool to predict CTCF binding to my lncRNA using: python /prediction.py -f /Users/tali/Desktop/lncRNA_seqes.fa -o prediction.output
however, the tool throws out this error message:
2022-10-05 10:08:59.419265: I tensorflow/core/platform/cpu_feature_guard.cc:193] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
2022-10-05 10:09:01.960968: I tensorflow/core/platform/cpu_feature_guard.cc:193] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
WARNING:tensorflow:Please fix your imports. Module tensorflow.python.training.tracking.base has been moved to tensorflow.python.trackable.base. The old module will be deleted in version 2.11.
Traceback (most recent call last):
File "/prediction.py", line 36, in <module>
main()
File "/prediction.py", line 33, in main
prediction(infile,outfile)
File "/prediction.py", line 10, in prediction
X,geneinfo = get_pred_data(infile)
File /utils.py", line 91, in get_pred_data
(seqmatrix, gene, rank) = get_seq_matrix(infile,seqmatrix,rank)
File "/utils.py", line 48, in get_seq_matrix
seqmatrix[rank] = seqcode
ValueError: could not broadcast input array from shape (4,675) into shape (4,201)
what might be went wrong?
Im using MacOS 12.2
thanks much
Tamer
The text was updated successfully, but these errors were encountered:
Dear all,
I am trying to use this interesting tool to predict CTCF binding to my lncRNA using:
python /prediction.py -f /Users/tali/Desktop/lncRNA_seqes.fa -o prediction.output
however, the tool throws out this error message:
what might be went wrong?
Im using MacOS 12.2
thanks much
Tamer
The text was updated successfully, but these errors were encountered: