_pkgdown.yml

template:
  bootstrap: 5

home:
  title: An R package for genotype by environment analysis

navbar:
  title: "statgenGxE"
  left:
    - icon: fa-home
      href: index.html
    - text: "Vignettes"
      href: articles/index.html
  right:
    - icon: fa-newspaper-o
      text: "news"
      href: news/index.html
    - icon: fa-file-code-o
      text: "functions"
      href: reference/index.html
    - icon: fa-seedling
      text: "other packages"
      menu:
        - text: "statgenSTA"
          href: https://biometris.github.io/statgenSTA
        - text: "statgenGWAS"
          href: https://biometris.github.io/statgenGWAS
        - text: "statgenHTP"
          href: https://biometris.github.io/statgenHTP
        - text: "statgenIBD"
          href: https://biometris.github.io/statgenIBD
        - text: "statgenMPP"
          href: https://biometris.github.io/statgenMPP
        - text: "statgenQTLxT"
          href: https://biometris.github.io/statgenQTLxT
        - text: "LMMsolver"
          href: https://biometris.github.io/LMMsolver
    - icon: fa-github fa-lg
      text: "github"
      href: https://github.com/Biometris/statgenGxE


articles:
  - title: "Vignettes"
    desc: >
      This vignette provides a full description of the statgenGxE package
      including a fully worked example.
    contents:
      - statgenGxE

reference:
- title: Mixed model analysis of GxE table of means
- contents:
  - gxeVarComp
  - plot.varComp
  - predict.varComp
  - vc
  - herit
  - CRDR
  - correlations
  - diagnostics
- title: Finlay-Wilkinson
- contents:
  - gxeFw
  - plot.FW
  - report.FW
  - fitted.FW
  - residuals.FW
- title: AMMI
- contents:
  - gxeAmmi
  - plot.AMMI
  - report.AMMI
  - fitted.AMMI
  - residuals.AMMI
- title: GGE
- contents:
  - gxeGGE
- title: Identifying mega environments
- contents:
  - gxeMegaEnv
  - plot.megaEnv
  - predict.megaEnv
- title: Stability measures
- contents:
  - gxeStability
  - plot.stability
  - report.stability
- title: Modeling of heterogeneity of genetic variances and correlations
- contents:
  - gxeVarCov
  - plot.varCov
  - report.varCov
  - fitted.varCov
  - residuals.varCov
- title: Example data
- contents:
  - dropsPheno
  - TDMaize
- title: Internal helper functions
- contents:
  - multMissing