Merge pull request #345 from favreau/master

Version 1.7.1

Author: Cyrille Favreau

.github/workflows/pypi_tag.yml

@@ -21,7 +21,7 @@ jobs:
       run: |
         cd bioexplorer/pythonsdk
         python -m pip install --upgrade pip
-        pip install -r requirements_dev.txt    
+        pip install --no-deps -r requirements_dev.txt    
         python setup.py sdist
     - name: Publish Python package to PyPI (test)
       uses: pypa/gh-action-pypi-publish@release/v1

CMakeLists.txt

@@ -23,7 +23,7 @@ set(NAME BIOEXPLORER)
 set(PACKAGE_VERSION_ABI 1)
 set(PACKAGE_VERSION_MAJOR 1)
 set(PACKAGE_VERSION_MINOR 7)
-set(PACKAGE_VERSION_PATCH 0)
+set(PACKAGE_VERSION_PATCH 1)
 
 # Get the Git revision using the git command
 execute_process(

bioexplorer/pythonsdk/Makefile

@@ -33,7 +33,7 @@ unexport DISPLAY
 # Test coverage pass threshold (percent)
 MIN_COV?=45
 VENV_INSTALLED=.installed
-PIP_INSTALL_OPTIONS=--ignore-installed
+PIP_INSTALL_OPTIONS=--ignore-installed --no-deps
 
 FIND_LINT_PY=`find bioexplorer -name "*.py" -not -path "*/*test*"`
 LINT_PYFILES := $(shell find $(FIND_LINT_PY))

bioexplorer/pythonsdk/bioexplorer/bio_explorer.py

@@ -3040,7 +3040,14 @@ def add_sdf_demo(self):
 
         return self._invoke_and_check("add-sdf-demo")
 
-    def add_torus(self, name, position, outer_radius, inner_radius, displacement_parameters=Vector3()):
+    def add_torus(
+        self,
+        name,
+        position,
+        outer_radius,
+        inner_radius,
+        displacement_parameters=Vector3(),
+    ):
         """
         Add a torus to the scene
 
@@ -3063,7 +3070,14 @@ def add_torus(self, name, position, outer_radius, inner_radius, displacement_par
         params["displacement"] = displacement_parameters.to_list()
         return self._invoke_and_check("add-torus", params)
 
-    def add_vesica(self, name, source_position, target_position, radius, displacement_parameters=Vector3()):
+    def add_vesica(
+        self,
+        name,
+        source_position,
+        target_position,
+        radius,
+        displacement_parameters=Vector3(),
+    ):
         """
         Add a vesica to the scene
 

bioexplorer/pythonsdk/bioexplorer/version.py

@@ -21,4 +21,4 @@
 # You should have received a copy of the GNU General Public License along with
 # this program.  If not, see <https://www.gnu.org/licenses/>.
 
-VERSION = "1.7.0"
+VERSION = "1.7.1"

bioexplorer/pythonsdk/notebooks/widgets/BioExplorer_widgets.ipynb

@@ -42,17 +42,6 @@
     "w.display_focal_distance(with_preview=True)"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "scrolled": false
-   },
-   "outputs": [],
-   "source": [
-    "w.display_palette_for_models()"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,

bioexplorer/pythonsdk/requirements_dev.txt

@@ -30,7 +30,7 @@ pygments~=2.4.1
 pylint~=2.6.0
 pycodestyle~=2.7.0
 pydocstyle~=3.0.0
-nose~=1.3.7
+nose~=1.2.1
 coverage~=7.1.0
 nosexcover~=1.0.11
 tox~=3.6.1

bioexplorer/pythonsdk/setup.cfg

@@ -1,5 +1,5 @@
 [metadata]
-version = 1.7.0
+version = 1.7.1
 name = bioexplorer
 summary = Blue Brain BioExplorer python API
 long_description = file: README.md

bioexplorer/ui/package.json

@@ -1,6 +1,6 @@
 {
     "name": "bioexplorer-ui",
-    "version": "0.1.0",
+    "version": "1.7.1",
     "license": "LGPL-3.0+",
     "private": true,
     "scripts": {
@@ -26,5 +26,8 @@
     "workspaces": [
         "apps/*",
         "packages/*"
-    ]
+    ],
+    "dependencies": {
+        "yarn": "^1.22.21"
+    }
 }