diff --git a/bluepyemodel/efeatures_extraction/auto_targets.py b/bluepyemodel/efeatures_extraction/auto_targets.py index a7c3d706..acc6ef68 100644 --- a/bluepyemodel/efeatures_extraction/auto_targets.py +++ b/bluepyemodel/efeatures_extraction/auto_targets.py @@ -36,29 +36,32 @@ ], "amplitudes": [200, 150, 250, 300], "efeatures": [ + "Spikecount", + "depol_block_bool", "voltage_base", - "adaptation_index2", + "voltage_after_stim", "mean_frequency", "time_to_first_spike", "time_to_last_spike", + "inv_time_to_first_spike", "inv_first_ISI", "inv_second_ISI", "inv_third_ISI", - "inv_fourth_ISI", - "inv_fifth_ISI", "inv_last_ISI", "ISI_CV", "ISI_log_slope", "doublet_ISI", - "AP_amplitude", - "AP1_amp", - "APlast_amp", "AHP_depth", "AHP_time_from_peak", + "strict_burst_number", + "strict_burst_mean_freq", + "number_initial_spikes", + "irregularity_index", + "adaptation_index", ], "min_recordings_per_amplitude": 1, "preferred_number_protocols": 2, - "tolerance": 25.0, + "tolerance": 20.0, }, "ap_waveform": { "protocols": [ @@ -78,39 +81,36 @@ "efeatures": [ "AP_amplitude", "AP1_amp", - "AP2_amp", - "AP_width", "AP_duration_half_width", - "AP_rise_time", - "AP_fall_time", - "AHP_depth_abs", - "AHP_time_from_peak", "AHP_depth", ], "min_recordings_per_amplitude": 1, "preferred_number_protocols": 1, - "tolerance": 25.0, + "tolerance": 20.0, }, "iv": { "protocols": ["IV", "Step"], "amplitudes": [0, -40, -100], "efeatures": [ "voltage_base", - "steady_state_voltage_stimend", "ohmic_input_resistance_vb_ssse", - "voltage_deflection", - "voltage_deflection_begin", - "decay_time_constant_after_stim", - "Spikecount", - "sag_ratio1", - "sag_ratio2", - "sag_amplitude", - "sag_time_constant", ], "min_recordings_per_amplitude": 1, "preferred_number_protocols": 2, "tolerance": 10.0, }, + "validation": { + "protocols": ["IDhyperpol", "IDHyperpol"], + "amplitudes": [150, 200], + "efeatures": [ + "mean_frequency", + "voltage_base", + "depol_block_bool", + ], + "min_recordings_per_amplitude": 1, + "preferred_number_protocols": 2, + "tolerance": 20.0, + } }