tox.ini

[base]
name = neurodamus

[tox]
envlist = flake8, unit

[testenv]
deps =
    -r tests/requirements.txt


[testenv:unit]
commands =
    pytest tests/unit


[testenv:integration]
deps =
    NEURON
    morphio
    -r tests/requirements.txt
passenv = NEURODAMUS_NEOCORTEX_ROOT
setenv =
    # build_ndcore.sh will install into _lib
    HOC_LIBRARY_PATH={toxinidir}/_lib
    NRNMECH_LIB_PATH={toxinidir}/_lib/libnrnmech.so
    NEURON_INIT_MPI=0
    PYTHONPATH = {toxinidir}/core/python
allowlist_externals =
    {toxinidir}/ci/build_ndcore.sh
commands =
    {toxinidir}/ci/build_ndcore.sh {toxinidir}/neurodamus/data
    pytest -x --forked tests/integration


[testenv:bbp-model]
# Please module load neurodamus-neocortex py-neurodamus beforehand
passenv = *
setenv =
    PYTHONPATH={toxinidir}:{env:PYTHONPATH}
    HOC_LIBRARY_PATH={toxinidir}/core/hoc:{env:HOC_LIBRARY_PATH}
    NEURON_INIT_MPI=1
commands =
    python -c "import os; print(os.environ.get('HOC_LIBRARY_PATH', ''))"
    pytest -s -x --forked --durations=5 --durations-min=15 {posargs:tests/integration-e2e}


[testenv:flake8]
changedir = {toxinidir}
deps = flake8-pyproject
skip_install = True
commands = flake8


[testenv:docs]
changedir = {toxinidir}
deps =
    sphinx<5.1.0
    sphinx-bluebrain-theme
setenv =
    PYTHONPATH = {toxinidir}
    PIP_INDEX_URL = https://bbpteam.epfl.ch/repository/devpi/simple
commands =
    sphinx-build -T -W docs docs/_build