From 8dae140cb01b51cea8527b1758d2308b2daf2c75 Mon Sep 17 00:00:00 2001 From: Weina Ji Date: Mon, 14 Oct 2024 20:08:58 +0200 Subject: [PATCH] add config files for the sub circuit --- .../v5_sonata/sub_L4_SP/circuit_config.json | 38 +++++++++++++++++++ .../v5_sonata/sub_L4_SP/node_sets.json | 1 + 2 files changed, 39 insertions(+) create mode 100644 tests/simulations/v5_sonata/sub_L4_SP/circuit_config.json create mode 120000 tests/simulations/v5_sonata/sub_L4_SP/node_sets.json diff --git a/tests/simulations/v5_sonata/sub_L4_SP/circuit_config.json b/tests/simulations/v5_sonata/sub_L4_SP/circuit_config.json new file mode 100644 index 00000000..dcd3d420 --- /dev/null +++ b/tests/simulations/v5_sonata/sub_L4_SP/circuit_config.json @@ -0,0 +1,38 @@ +{ + "components": { + "biophysical_neuron_models_dir": "/gpfs/bbp.cscs.ch/project/proj1/circuits/SomatosensoryCxS1-v5.r0/O1-sonata/sonata/components/biophysical_model_templates", + "morphologies_dir": "/gpfs/bbp.cscs.ch/release/l2/data/morphologies/31.05.12" + }, + "networks": { + "edges": [ + { + "edge_types_file": null, + "edges_file": "$BASE_DIR/default/edges.h5", + "populations": { + "default": { + "type": "chemical" + } + } + } + ], + "nodes": [ + { + "node_types_file": null, + "nodes_file": "$BASE_DIR/default/nodes.h5", + "populations": { + "default": { + "alternate_morphologies": { + "h5v1": "/gpfs/bbp.cscs.ch/release/l2/data/morphologies/31.05.12/h5v1", + "neurolucida-asc": "/gpfs/bbp.cscs.ch/release/l2/data/morphologies/31.05.12/ascii" + }, + "type": "biophysical" + } + } + } + ] + }, + "node_sets_file": "$BASE_DIR/node_sets.json", + "manifest": { + "$BASE_DIR": "./" + } +} diff --git a/tests/simulations/v5_sonata/sub_L4_SP/node_sets.json b/tests/simulations/v5_sonata/sub_L4_SP/node_sets.json new file mode 120000 index 00000000..a56378f5 --- /dev/null +++ b/tests/simulations/v5_sonata/sub_L4_SP/node_sets.json @@ -0,0 +1 @@ +../node_sets.json \ No newline at end of file