DESCRIPTION

Package: cytoviewer
Version: 1.5.0
Title: An interactive multi-channel image viewer for R
Description: 
    This R package supports interactive visualization of multi-channel images 
    and segmentation masks generated by imaging mass cytometry and other highly 
    multiplexed imaging techniques using shiny. The cytoviewer interface is 
    divided into image-level (Composite and Channels) and cell-level 
    visualization (Masks). It allows users to overlay individual images with 
    segmentation masks, integrates well with SingleCellExperiment and 
    SpatialExperiment objects for metadata visualization and 
    supports image downloads.
Authors@R: 
    c(person("Lasse", "Meyer", role = c("aut", "cre"), 
      email = "lasse.meyer@dqbm.uzh.ch",
      comment = c(ORCID = "0000-0002-1660-1199")),
      person("Nils", "Eling", role = c("aut"), 
      email = "nils.eling@dqbm.uzh.ch",
      comment = c(ORCID = "0000-0002-4711-1176")))
License: GPL-3
Imports:
    shiny, 
    shinydashboard,
    utils,
    colourpicker,
    shinycssloaders,
    svgPanZoom,
    viridis,
    archive,
    grDevices,
    RColorBrewer,
    svglite,
    EBImage,
    methods,
    cytomapper,
    SingleCellExperiment,
    S4Vectors, 
    SummarizedExperiment
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    markdown,
    testthat
biocViews: ImmunoOncology, Software, SingleCell, OneChannel, TwoChannel, MultiChannel, Spatial, DataImport
VignetteBuilder: knitr
URL: https://github.com/BodenmillerGroup/cytoviewer
BugReports: https://github.com/BodenmillerGroup/cytoviewer/issues
RoxygenNote: 7.2.3
Encoding: UTF-8