{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":386377111,"defaultBranch":"main","name":"haptools","ownerLogin":"CAST-genomics","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-07-15T17:44:31.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/112506719?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1725703310.0","currentOid":""},"activityList":{"items":[{"before":"4b1f88931b2784297bc053f78bb16222098238c5","after":"413c64541db3fe55c2ba28d19137e2863445f6e3","ref":"refs/heads/feat/parallel-pgen","pushedAt":"2024-09-12T20:06:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"try bigger chunks in bench_gts","shortMessageHtmlLink":"try bigger chunks in bench_gts"}},{"before":"2a1471d226df946f15b71f2b303591b259e5581e","after":"4b1f88931b2784297bc053f78bb16222098238c5","ref":"refs/heads/feat/parallel-pgen","pushedAt":"2024-09-12T17:08:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"try to use mp.starmap's chunking","shortMessageHtmlLink":"try to use mp.starmap's chunking"}},{"before":"c880c962e82665f6a35d6fd7ecd7b274c7bbddd9","after":"2a1471d226df946f15b71f2b303591b259e5581e","ref":"refs/heads/feat/parallel-pgen","pushedAt":"2024-09-11T17:05:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"improve splitting of variants across CPUs using Navid's strategy","shortMessageHtmlLink":"improve splitting of variants across CPUs using Navid's strategy"}},{"before":"a06cb6bf67abc6f6028d40a28cfe3ac9c9fa4a6c","after":"c880c962e82665f6a35d6fd7ecd7b274c7bbddd9","ref":"refs/heads/feat/parallel-pgen","pushedAt":"2024-09-11T11:33:51.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"fix chunking bug in bench gts","shortMessageHtmlLink":"fix chunking bug in bench gts"}},{"before":"777e96af01b76fcccb05fdbe0921f3471962a7bc","after":"a06cb6bf67abc6f6028d40a28cfe3ac9c9fa4a6c","ref":"refs/heads/feat/parallel-pgen","pushedAt":"2024-09-10T14:57:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"recover broken plotting of variants","shortMessageHtmlLink":"recover broken plotting of variants"}},{"before":"c83c905dd446dece19e0cd5fa607ddc695402bef","after":"777e96af01b76fcccb05fdbe0921f3471962a7bc","ref":"refs/heads/feat/parallel-pgen","pushedAt":"2024-09-10T14:46:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"fix polyfit bug when vals for file type are not generated","shortMessageHtmlLink":"fix polyfit bug when vals for file type are not generated"}},{"before":"bc4bb6fe5ee6c2f8dd466cd0c28feb69177f105b","after":"c83c905dd446dece19e0cd5fa607ddc695402bef","ref":"refs/heads/feat/parallel-pgen","pushedAt":"2024-09-10T14:32:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"refrain from doing unnecessary benchmarks and remove chunk_size param","shortMessageHtmlLink":"refrain from doing unnecessary benchmarks and remove chunk_size param"}},{"before":"8fada1d20f4db166f2098a3660cf7e0d30895d1c","after":"bc4bb6fe5ee6c2f8dd466cd0c28feb69177f105b","ref":"refs/heads/feat/parallel-pgen","pushedAt":"2024-09-09T15:01:00.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"try to optimize cpu usage and use more accurate measure of num CPUs","shortMessageHtmlLink":"try to optimize cpu usage and use more accurate measure of num CPUs"}},{"before":null,"after":"8fada1d20f4db166f2098a3660cf7e0d30895d1c","ref":"refs/heads/feat/parallel-pgen","pushedAt":"2024-09-07T10:01:50.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"refactor: move pgen chunk reading into a separate helper function","shortMessageHtmlLink":"refactor: move pgen chunk reading into a separate helper function"}},{"before":"bd1dfee651cddaadbad1a1f5625f5742a56c3a94","after":"0dfb7e0c61dcd37e71c841117b89c59d4d8f0f4e","ref":"refs/heads/release-please--branches--main","pushedAt":"2024-08-27T18:11:38.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"chore(main): release 0.5.0","shortMessageHtmlLink":"chore(main): release 0.5.0"}},{"before":"376668ce96642c7e74668e5ecef63343146e4a34","after":null,"ref":"refs/heads/ci/macos-14","pushedAt":"2024-08-27T18:10:48.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"}},{"before":"02266539cb5d242497658e9fffec3aa7139fe8ee","after":"3f055acdb6f4effc58fde6dcff993654dbf73985","ref":"refs/heads/main","pushedAt":"2024-08-27T18:10:46.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"feat: support for Apple M1 silicon (#255)","shortMessageHtmlLink":"feat: support for Apple M1 silicon (#255)"}},{"before":"b27c37a87114189af30eb0a399b6d8d4bb261567","after":"376668ce96642c7e74668e5ecef63343146e4a34","ref":"refs/heads/ci/macos-14","pushedAt":"2024-08-22T13:12:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"switch to latest macos","shortMessageHtmlLink":"switch to latest macos"}},{"before":"d61d3d73179576a23c6a90bb6b2d35db52a06a67","after":"b27c37a87114189af30eb0a399b6d8d4bb261567","ref":"refs/heads/ci/macos-14","pushedAt":"2024-08-22T13:03:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"use py3.11 with macos 14\n\nsince locked versions of dependencies aren't compatible with macos arm - only the newest ones are","shortMessageHtmlLink":"use py3.11 with macos 14"}},{"before":"4cc4b874325105e56c133cbd03c1ff194f8939e8","after":"d61d3d73179576a23c6a90bb6b2d35db52a06a67","ref":"refs/heads/ci/macos-14","pushedAt":"2024-08-22T06:40:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"oops - fix missing space","shortMessageHtmlLink":"oops - fix missing space"}},{"before":"02266539cb5d242497658e9fffec3aa7139fe8ee","after":"4cc4b874325105e56c133cbd03c1ff194f8939e8","ref":"refs/heads/ci/macos-14","pushedAt":"2024-08-22T06:35:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"add new macos m1 arm test to ci","shortMessageHtmlLink":"add new macos m1 arm test to ci"}},{"before":null,"after":"02266539cb5d242497658e9fffec3aa7139fe8ee","ref":"refs/heads/ci/macos-14","pushedAt":"2024-08-22T06:33:36.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"fix: issue warnings instead of errors when trying to check the header of hap files and issue error when output of transform is not provided to simphenotype (#254)","shortMessageHtmlLink":"fix: issue warnings instead of errors when trying to check the header…"}},{"before":"bb9437f0e7059eac34d44be17d9990beebe4b765","after":"bd1dfee651cddaadbad1a1f5625f5742a56c3a94","ref":"refs/heads/release-please--branches--main","pushedAt":"2024-08-07T17:38:34.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"chore(main): release 0.5.0","shortMessageHtmlLink":"chore(main): release 0.5.0"}},{"before":"bc1f7aee2f0034db5b137fea62dafc4bdf81f2eb","after":null,"ref":"refs/heads/fix/simpts-header-check","pushedAt":"2024-08-07T17:37:44.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"}},{"before":"763a09df1dd0f6748b34de5eacec688d10300807","after":"02266539cb5d242497658e9fffec3aa7139fe8ee","ref":"refs/heads/main","pushedAt":"2024-08-07T17:37:41.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"fix: issue warnings instead of errors when trying to check the header of hap files and issue error when output of transform is not provided to simphenotype (#254)","shortMessageHtmlLink":"fix: issue warnings instead of errors when trying to check the header…"}},{"before":"b6d86d901490ec324c574b070e55138c419ff2df","after":"21fce9272df1546ccd60452caaa6e6ef5c42def2","ref":"refs/heads/ci/type-checking","pushedAt":"2024-08-05T00:08:54.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"turn on basic type checking","shortMessageHtmlLink":"turn on basic type checking"}},{"before":"62ef5e749543ad49c9dc356dd71d62a829af8831","after":"b6d86d901490ec324c574b070e55138c419ff2df","ref":"refs/heads/ci/type-checking","pushedAt":"2024-08-02T22:57:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"remove cls type hint for classmethods","shortMessageHtmlLink":"remove cls type hint for classmethods"}},{"before":"2dd6685302f052824b690ef4a698eb16b4f33616","after":"bc1f7aee2f0034db5b137fea62dafc4bdf81f2eb","ref":"refs/heads/fix/simpts-header-check","pushedAt":"2024-08-02T20:49:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"refmt for black","shortMessageHtmlLink":"refmt for black"}},{"before":"317c9b4f30b82fcde237b097417605130194a79c","after":"2dd6685302f052824b690ef4a698eb16b4f33616","ref":"refs/heads/fix/simpts-header-check","pushedAt":"2024-08-02T20:45:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"fix gt warning in simphenotype and convert to error","shortMessageHtmlLink":"fix gt warning in simphenotype and convert to error"}},{"before":null,"after":"317c9b4f30b82fcde237b097417605130194a79c","ref":"refs/heads/fix/simpts-header-check","pushedAt":"2024-06-28T17:16:38.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"treat soft errors as warnings instead","shortMessageHtmlLink":"treat soft errors as warnings instead"}},{"before":"ed4c6cc70aed4be05d11901e52bad497badcb73a","after":"62ef5e749543ad49c9dc356dd71d62a829af8831","ref":"refs/heads/ci/type-checking","pushedAt":"2024-06-27T05:42:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"fix devcontainer config","shortMessageHtmlLink":"fix devcontainer config"}},{"before":"eb70f1cecd29286636967742f92e251eb6be33b0","after":"ed4c6cc70aed4be05d11901e52bad497badcb73a","ref":"refs/heads/ci/type-checking","pushedAt":"2024-06-27T05:29:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"try to make venv in current folder instead","shortMessageHtmlLink":"try to make venv in current folder instead"}},{"before":"c35b77ea0538a456e1c6325ca499e290901b9732","after":"eb70f1cecd29286636967742f92e251eb6be33b0","ref":"refs/heads/ci/type-checking","pushedAt":"2024-06-27T05:11:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"try adding all of the settings","shortMessageHtmlLink":"try adding all of the settings"}},{"before":null,"after":"c35b77ea0538a456e1c6325ca499e290901b9732","ref":"refs/heads/ci/type-checking","pushedAt":"2024-06-26T23:48:27.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"},"commit":{"message":"add a few more devcontainer settings","shortMessageHtmlLink":"add a few more devcontainer settings"}},{"before":"52e9d5aeda267b576d0e5a36e9b730d969f7f2dd","after":null,"ref":"refs/heads/release-please--branches--main--components--haptools","pushedAt":"2024-06-19T19:08:25.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"aryarm","name":"Arya Massarat","path":"/aryarm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23412689?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xMlQyMDowNjo0Mi4wMDAwMDBazwAAAAS0zv0V","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xMlQyMDowNjo0Mi4wMDAwMDBazwAAAAS0zv0V","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNi0xOVQxOTowODoyNS4wMDAwMDBazwAAAARp3K1q"}},"title":"Activity · CAST-genomics/haptools"}