You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi,
I was using debar on my fastq file with the input and output (default) as fastq.
Later, I wanted to process the file further with usearch (dereplication) but it says ---Fatal error--- Bad FASTQ record: 418 bases, 493 quals line 152 file XX.fq label AA
I looked up the label and the bases @AA AATAAATAATATGAGATTTTGACTTTTACCTCCTGCTTTAACATTGCTGCTAACTAGCAGCATAGTAGAAACTGGAGCTGGAACAGGATGAACTGTTTAC CCCCCACTATCATCTAATATTGCTCATGGAGGAGCCTCTGTTGATTTAGCTATTTTTTCCCTTCATTTAGCAGGAATCTCCTCTCTTCTAGGAGCCGTAA ATTTTATTACAACTGTAATTAATATACGATCAATAGGAATTACATTCGATCGCATACCTTTATTTGTATGATCAGTAGTAATTACAGCTTTATTATTACT TTTATCATTACCTGTTTTAGCAGGAGCTATTACAATATTATTGACAGATCGAAATTTAAATACATCTTTTTTTGACCCTGCAGGAGGAGGAGATCCAGTA TTATACCAGCATTTATTT + .... .... AGH:HFAFGGHG=GHGGA@AA
There seems to be a case where the label is not written in a new line?
I'm continuing with outformat ="fasta"
The text was updated successfully, but these errors were encountered:
and with fasta input it says: Error in data.frame(header_data = head_line, sequence = data[seq(2, length(data), : arguments imply differing number of rows: 145786, 145785
Hi,
I was using debar on my fastq file with the input and output (default) as fastq.
Later, I wanted to process the file further with usearch (dereplication) but it says
---Fatal error--- Bad FASTQ record: 418 bases, 493 quals line 152 file XX.fq label AA
I looked up the label and the bases
@AA AATAAATAATATGAGATTTTGACTTTTACCTCCTGCTTTAACATTGCTGCTAACTAGCAGCATAGTAGAAACTGGAGCTGGAACAGGATGAACTGTTTAC CCCCCACTATCATCTAATATTGCTCATGGAGGAGCCTCTGTTGATTTAGCTATTTTTTCCCTTCATTTAGCAGGAATCTCCTCTCTTCTAGGAGCCGTAA ATTTTATTACAACTGTAATTAATATACGATCAATAGGAATTACATTCGATCGCATACCTTTATTTGTATGATCAGTAGTAATTACAGCTTTATTATTACT TTTATCATTACCTGTTTTAGCAGGAGCTATTACAATATTATTGACAGATCGAAATTTAAATACATCTTTTTTTGACCCTGCAGGAGGAGGAGATCCAGTA TTATACCAGCATTTATTT + .... .... AGH:HFAFGGHG=GHGGA@AA
There seems to be a case where the label is not written in a new line?
I'm continuing with outformat ="fasta"
The text was updated successfully, but these errors were encountered: