Issues with refgenie indexes #721
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SBaluszek
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I've encountered issue with using hg19 pre-computed indices - with both salmon_sa_index and salmon_partial_sa_index. There is a [rapidjson internal assertion failure: IsObject()] message error. Quantification works well with hg19 index built on my machine. I'm running Ubuntu 20.04 LTS on a machine with Windows.
I would really appreciate some information. Especially if refgenie indices are deprecated. Thanks!
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