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make_tables.py
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make_tables.py
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#!/usr/bin/env python
# Update tables of namelists
import nmltab # from https://github.com/aekiss/nmltab
import os
import subprocess
configs = 'configs'
tables = 'tables'
os.makedirs(tables, exist_ok=True)
def getsubmodules(gitmodules='.gitmodules'):
"""Return dict of contents of .gitmodules
"""
submodules = dict()
submodule = list() # deliberately invalid dict key
with open(gitmodules, 'r') as f:
for line in f:
if line.startswith('[submodule "'):
submodule = line.split('[submodule "')[1].split('"')[0]
submodules[submodule] = dict()
else:
line = line.strip()
key, value = line.split(' = ')
submodules[submodule][key] = value
return submodules
os.chdir(configs)
def getnmlfnameurls(nmls):
"""Return dict of urls for each namelist path
nmls: list of paths to namelists
returns dict:
key = nml
value = url
"""
nmlfnameurls = dict()
submodules = getsubmodules('../.gitmodules')
submods = dict()
for val in submodules.values(): # use submodule paths (relative to conifigs) as keys
path = os.path.sep.join(val['path'].split(configs+os.path.sep)[1:]) # strip off configs
submods[path] = val
for fn in nmls:
try:
p = subprocess.Popen('cd ' + os.path.dirname(fn)
+ ' && git rev-parse HEAD',
stdout=subprocess.PIPE, shell=True)
hash = p.communicate()[0].decode('ascii').strip()
nmlfnameurls[fn] = '/'.join([
submods[fn.split(os.path.sep)[0]]['url'].split('.git')[0],
'blob',
hash,
os.path.sep.join(fn.split(os.path.sep)[1:])
])
except:
pass
return nmlfnameurls
def savetables(nmls, fname, url):
"""Save tabulated namelists.
nmls: list of paths to namelists
fname: initial part of output filenames
url: link to search on variables
"""
print(' {}'.format(fname))
fname += '_nml'
nmld = nmltab.nmldict(nmls)
nmlfnameurls = getnmlfnameurls(nmls)
print(os.path.dirname(fname))
os.makedirs(os.path.join('..', tables, os.path.dirname(fname)), exist_ok=True)
for i in range(2):
st = nmltab.strnmldict(nmld, fmt='latex', url=url)
with open(os.path.join('..', tables, fname+'.tex'), 'w') as f:
f.write(st)
st = nmltab.strnmldict(nmld, fmt='markdown2', url=url, nmlfnameurls=nmlfnameurls, breaks=True)
with open(os.path.join('..', tables, fname+'.md'), 'w') as f:
f.write(st)
st = nmltab.strnmldict(nmld, fmt='csv', url=url)
with open(os.path.join('..', tables, fname+'.csv'), 'w') as f:
f.write(st)
nmltab.nmldiff(nmld)
fname += "_diff"
savetables([
'MOM6-CICE6_1deg_jra55do_ryf/ice_in',
'ACCESS-OM2_1deg_jra55_ryf/ice/cice_in.nml',
],
'ice_in/cice',
'https://cice-consortium-cice.readthedocs.io/en/main/search.html?q=')
savetables( [
'MOM6-CICE6_1deg_jra55do_ryf/ice_in',
'MOM6-CICE6_025deg_jra55do_ryf_iss101/ice_in',
'ACCESS-OM2_025deg_jra55_ryf/ice/cice_in.nml',
],
'ice_in/cice_1_025',
'https://cice-consortium-cice.readthedocs.io/en/main/search.html?q=')
savetables( [
'MOM6-CICE6_1deg_jra55do_ryf/ice_in',
'MOM6-CICE6_1deg_jra55do_iaf/ice_in',
'MOM6-CICE6_025deg_jra55do_ryf_iss101/ice_in',
],
'ice_in/MOM6-CICE6',
'https://cice-consortium-cice.readthedocs.io/en/main/search.html?q=')
savetables( [
'MOM6-CICE6_1deg_jra55do_ryf/MOM_input',
'MOM6-CICE6_1deg_jra55do_iaf/MOM_input',
'MOM6-CICE6_025deg_jra55do_ryf_iss101/MOM_input',
],
'MOM_input/MOM6-CICE6',
'https://github.com/mom-ocean/MOM6/search?q=')
savetables( [
'MOM6-CICE6_1deg_jra55do_ryf/MOM_input',
'MOM6-CICE6_gmom_jra/MOM_input',
],
'MOM_input/MOM6-CICE6-CESM',
'https://github.com/mom-ocean/MOM6/search?q=')
savetables( [
'MOM6-CICE6-WW3_1deg_jra55do_ryf/MOM_input',
'MOM6-CICE6-WW3_1deg_jra55do_iaf/MOM_input',
],
'MOM_input/MOM6-CICE6-WW3',
'https://github.com/mom-ocean/MOM6/search?q=')
savetables( [
'MOM6-CICE6-WW3_1deg_jra55do_ryf/MOM_input',
'MOM6-CICE6-WW3_gmom_jra_wd/MOM_input',
],
'MOM_input/MOM6-CICE6-WW3-CESM',
'https://github.com/mom-ocean/MOM6/search?q=')
savetables( [
'MOM6-CICE6_1deg_jra55do_ryf/MOM_input',
'MOM6-CICE6-WW3_1deg_jra55do_ryf/MOM_input',
],
'MOM_input/MOM6-CICE6_MOM6-CICE6-WW3',
'https://github.com/mom-ocean/MOM6/search?q=')
savetables( [
'MOM6-CICE6_1deg_jra55do_ryf/MOM_input',
'mom6-om4-025/MOM_input',
'mom6-panan/MOM_input',
# 'mom6-eac/MOM_input', # no relevant differences from mom6-panan
#'ACCESS-OM2_1deg_jra55_ryf/ocean/input.nml',
'MOM6-examples/ocean_only/global/MOM_input',
# 'MOM6-examples/ocean_only/global/MOM_parameter_doc.short',
],
'MOM_input/mom6',
'https://github.com/mom-ocean/MOM6/search?q=')
savetables( [
'MOM6-CICE6_1deg_jra55do_ryf/MOM_input',
'mom6-om4-025/MOM_input',
'MOM6-examples/ocean_only/global/MOM_input',
],
'MOM_input/mom6_global',
'https://github.com/mom-ocean/MOM6/search?q=')
savetables( [
'mom6-panan/MOM_input',
'mom6-eac/MOM_input'
],
'MOM_input/mom6_regional',
'https://github.com/mom-ocean/MOM6/search?q=')
savetables( [
'ACCESS-OM2_1deg_jra55_ryf/ocean/input.nml',
'ACCESS-OM2_025deg_jra55_ryf/ocean/input.nml',
'ACCESS-OM2_01deg_jra55_ryf/ocean/input.nml',
],
'MOM_input/ACCESS-OM2-1-025-01',
'https://github.com/mom-ocean/MOM5/search?q=')
savetables( [
'ACCESS-OM2_1deg_jra55_ryf/ocean/input.nml',
'ACCESS-OM2_025deg_jra55_ryf/ocean/input.nml',
],
'MOM_input/ACCESS-OM2-1-025',
'https://github.com/mom-ocean/MOM5/search?q=')
savetables( [
'ACCESS-OM2_1deg_jra55_ryf/ice/cice_in.nml',
'ACCESS-OM2_025deg_jra55_ryf/ice/cice_in.nml',
'ACCESS-OM2_01deg_jra55_ryf/ice/cice_in.nml',
],
'ice_in/ACCESS-OM2-1-025-01',
'https://github.com/COSIMA/cice5/search?q=')
savetables( [
'GFDL-OM5/b00_MOM_parameter_doc.all',
'GFDL-OM5/b03_update_MOM_parameter_doc.all'
],
'MOM_input/GFDL-OM5',
'https://github.com/mom-ocean/MOM6/search?q=')
savetables( [
# 'MOM6-examples/ocean_only/global/MOM_parameter_doc.all',
# 'MOM6-examples/ice_ocean_SIS2/OM_1deg/MOM_parameter_doc.all',
'MOM6-examples/ice_ocean_SIS2/OM4_05/MOM_parameter_doc.all',
'MOM6-examples/ice_ocean_SIS2/OM4_025/MOM_parameter_doc.all',
'GFDL-OM5/b00_MOM_parameter_doc.all',
'GFDL-OM5/b03_update_MOM_parameter_doc.all'
],
'MOM_input/GFDL-OM4-OM5',
'https://github.com/mom-ocean/MOM6/search?q=')