diff --git a/.cz.toml b/.cz.toml new file mode 100644 index 0000000..dfb842e --- /dev/null +++ b/.cz.toml @@ -0,0 +1,15 @@ +[tool.commitizen] +name = "cz_conventional_commits" +tag_format = "$version" +version_scheme = "semver" +version = "0.1.0" +update_changelog_on_bump = true +major_version_zero = true + +[tool.commitizen.customize] +# Choices here are based on cz.conventional_commits.conventional_commits.ConventionalCommitsCz + +# We group some change_type values into "Internal". The custom template for the changelog may exclude them. +change_type_map = { "feat" = "Added", "fix" = "Fixed", "docs" = "Internal", "style" = "Internal", "refactor" = "Internal", "perf" = "Internal", "test" = "Internal", "ci" = "Internal", "chore" = "Internal", "revert" = "Internal", "infra" = "Internal", "build" = "Internal" } + +change_type_order = ["Added", "Fixed", "Internal"] diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 93152d8..03d693c 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -38,7 +38,7 @@ jobs: python-version: ${{ matrix.python-version }} - name: Setup poetry run: | - pip install pip==22.2.1 poetry==1.6.1 + pip install pip==22.2.1 poetry==1.8.2 poetry run pip install --upgrade pip - name: Install dev dependencies run: | diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml new file mode 100644 index 0000000..8bea019 --- /dev/null +++ b/.github/workflows/release.yml @@ -0,0 +1,30 @@ +name: Create Release + +on: + push: + tags: + - "*" + branches: + - main + +jobs: + build-and-publish: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v2 + + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: '3.11' + + - name : Setup poetry + run: | + pip install pip==22.2.1 poetry==1.8.2 + poetry run pip install --upgrade pip + + - name: Install dependencies + run: poetry install --all-extras + + - name: Build and Publish to PyPI + run: poetry publish --build --repository pypi --username __token__ --password ${{ secrets.PYPI_API_TOKEN }} diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 0000000..b2fec37 --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,23 @@ + + +## 0.1.0 (2024-07-17) + +### Feat + +- save refs to filesystem (#61) +- project summarize (#60) +- add utility methods for compiling, executing and creating/getting projects (#45) +- explicit type signatures for docstrings (#49) +- Use jupyterhub token format and allow configurable token path via env. (#30) +- Add h series noise model (#33) +- Restore some cli functionality (#28) +- Allow querying by properties (#22) +- Allow job properties to be passed (#21) + +### Fix + +- update small tests (#20) + +### Refactor + +- use v1beta jobs API and refactor models (#42) diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..f49a4e1 --- /dev/null +++ b/LICENSE @@ -0,0 +1,201 @@ + Apache License + Version 2.0, January 2004 + http://www.apache.org/licenses/ + + TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION + + 1. Definitions. + + "License" shall mean the terms and conditions for use, reproduction, + and distribution as defined by Sections 1 through 9 of this document. + + "Licensor" shall mean the copyright owner or entity authorized by + the copyright owner that is granting the License. + + "Legal Entity" shall mean the union of the acting entity and all + other entities that control, are controlled by, or are under common + control with that entity. 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We also recommend that a + file or class name and description of purpose be included on the + same "printed page" as the copyright notice for easier + identification within third-party archives. + + Copyright [yyyy] [name of copyright owner] + + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. \ No newline at end of file diff --git a/README.md b/README.md index 1aae367..2f0756e 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,131 @@ # qnexus -Quantinuum Nexus python client. + + + +[![pypi][]](https://pypi.org/project/qnexus/) +[![py-version][]](https://pypi.org/project/qnexus/) + + [py-version]: https://img.shields.io/pypi/pyversions/qnexus + [pypi]: https://img.shields.io/pypi/v/qnexus + +A python client for the [Quantinuum Nexus](https://nexus.quantinuum.com) platform. + +```python +import qnexus as qnx + +# Will open a browser window to login with Nexus credentials +qnx.login() + +# Dataframe representation of all your pending jobs in Nexus +qnx.jobs.get_all(job_status=["SUBMITTED", "QUEUED", "RUNNING"]).df() +``` + + +## Install + +qnexus can be installed via `pip`. + +```sh +pip install qnexus +``` + + +## Usage + +Usage examples and tutorials are available [here][examples]. + +[examples]: ./examples/ + + +## Development + +These instructions will get you a copy of the project up and running on your local machine for development and testing purposes. + +### Prerequisites + +- Python >= 3.10 +- [Poetry](https://python-poetry.org/docs/#installation) +- [commitizen](https://commitizen-tools.github.io/commitizen/) + +If you have [Nix](https://zero-to-nix.com/start/install) and [direnv](https://github.com/direnv available on your system you can reuse the nix shell environment to provide a development environment. + +### Installing + +Run the following to setup your virtual environment and install dependencies: + +```sh +poetry install +``` + +You can then activate the virtual environment and work within it with: + +```sh +poetry shell +``` + +To run a single command in the shell, just prefix it with `poetry run`. + + +### Checks + +Formatting, linting and type-checking can be done with: + +```sh +poetry run scripts/fmt.sh +``` + +### Testing + +Most of the test suite are integration tests that require the following environment variables: + +NEXUS_HOST = "staging.myqos.com" +NEXUS_QA_USER_EMAIL = ... +NEXUS_QA_USER_PASSWORD = ... + +And can be run with: + +```sh +poetry run pytest integration/ +``` + +Run basic unit tests using + +```sh +poetry run pytest tests/ +``` + +### Release + +### Step 1 - update the changelog + +- Update `CHANGELOG.md`: this is automated. Use `devenv` and the `commitizen` [tool](https://commitizen-tools.github.io/commitizen/): + ``` + git fetch --tags origin # make sure your local tags are same as in github + cz bump --files-only # --files-only prevents the tool making a git tag + ``` + This will use the [commit history](https://www.conventionalcommits.org/) and modify `CHANGELOG.md` to include a heading with the new version number and the date. It also updates `.cz.toml`. The tool automatically decides whether to increment the patch version, minor version or major version (major version changes are currently disabled in its config file). +- If you like, you can manually edit `CHANGELOG.md` at this point. Consider moving important entries under these headings, or writing under them (see [Keep A Changelog](https://keepachangelog.com/en/1.1.0/#how)): + - Deprecated + - Removed + - Security +- Create a release branch `git checkout -b release/vx.y.z` +- `git add` the modifications, then `git commit` and `git push` them. +- Create a PR (title: `docs: Update CHANGELOG for vx.y.z`) +- Ask a colleague to review the changes (should be just `CHANGELOG.md` and `.cz.toml`) +- Squash merge the PR into `main` + +### Step 2 - run the release workflow + +- On https://github.com/CQCL-DEV/qnexus, via the `make new release` button on the side: +- Select `create new tag` when selecting the tag, with name in the format below. +- Choose the target branch/commit for the release. + + +## License + +This project is licensed under Apache License, Version 2.0 ([LICENSE][] or http://www.apache.org/licenses/LICENSE-2.0). + + [LICENSE]: ./LICENSE + + +Copyright 2024 Quantinuum Ltd. diff --git a/example_notebooks/assignments_and_quotas.ipynb b/examples/assignments_and_quotas.ipynb similarity index 100% rename from example_notebooks/assignments_and_quotas.ipynb rename to examples/assignments_and_quotas.ipynb diff --git a/example_notebooks/context_management.ipynb b/examples/context_management.ipynb similarity index 100% rename from example_notebooks/context_management.ipynb rename to examples/context_management.ipynb diff --git a/example_notebooks/jobs_and_results.ipynb b/examples/jobs_and_results.ipynb similarity index 100% rename from example_notebooks/jobs_and_results.ipynb rename to examples/jobs_and_results.ipynb diff --git a/example_notebooks/resource_presentation.ipynb b/examples/resource_presentation.ipynb similarity index 100% rename from example_notebooks/resource_presentation.ipynb rename to examples/resource_presentation.ipynb diff --git a/example_notebooks/vqe_qnexus.ipynb b/examples/vqe_qnexus.ipynb similarity index 100% rename from example_notebooks/vqe_qnexus.ipynb rename to examples/vqe_qnexus.ipynb diff --git a/integration/test_ref_serialisation.py b/integration/test_ref_serialisation.py index dfaf569..a7534ac 100644 --- a/integration/test_ref_serialisation.py +++ b/integration/test_ref_serialisation.py @@ -1,13 +1,13 @@ """Test filesystem operations with Nexus Refs.""" +import shutil from datetime import datetime from pathlib import Path -import shutil from typing import cast import qnexus as qnx +from qnexus.filesystem import load, save from qnexus.references import BaseRef, JobRef -from qnexus.filesystem import save, load def test_save_load( # pylint: disable=too-many-locals diff --git a/poetry.lock b/poetry.lock index 409778d..8fdfa8f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,16 +1,5 @@ # This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. -[[package]] -name = "alabaster" -version = "0.7.16" -description = "A light, configurable Sphinx theme" -optional = false 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"typeguard"] name = "stevedore" version = "5.2.0" description = "Manage dynamic plugins for Python applications" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "stevedore-5.2.0-py3-none-any.whl", hash = "sha256:1c15d95766ca0569cad14cb6272d4d31dae66b011a929d7c18219c176ea1b5c9"}, @@ -4308,7 +3755,7 @@ pbr = ">=2.0.0,<2.1.0 || >2.1.0" name = "symengine" version = "0.11.0" description = "Python library providing wrappers to SymEngine" -optional = false +optional = true python-versions = ">=3.8,<4" files = [ {file = "symengine-0.11.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:a5ab2281fe5b3cbe8fbe4411c4e2e4ce6788e4d653b5d31b002d05f4af13b7c7"}, @@ -4457,26 +3904,6 @@ files = [ {file = "tornado-6.4.tar.gz", hash = "sha256:72291fa6e6bc84e626589f1c29d90a5a6d593ef5ae68052ee2ef000dfd273dee"}, ] -[[package]] -name = "tqdm" -version = "4.66.4" -description = "Fast, Extensible Progress Meter" -optional = false -python-versions = ">=3.7" -files = [ - {file = 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"sha256:215dbe7b4b94c2c50a7315c0275d2258399280fbb7d04182c7e55e24b5f93997"}, + {file = "twine-5.1.1.tar.gz", hash = "sha256:9aa0825139c02b3434d913545c7b847a21c835e11597f5255842d457da2322db"}, +] + +[package.dependencies] +importlib-metadata = ">=3.6" +keyring = ">=15.1" +pkginfo = ">=1.8.1,<1.11" +readme-renderer = ">=35.0" +requests = ">=2.20" +requests-toolbelt = ">=0.8.0,<0.9.0 || >0.9.0" +rfc3986 = ">=1.4.0" +rich = ">=12.0.0" +urllib3 = ">=1.26.0" + [[package]] name = "types-colorama" version = "0.4.15.20240311" @@ -4744,10 +4193,25 @@ files = [ {file = "widgetsnbextension-4.0.10.tar.gz", hash = "sha256:64196c5ff3b9a9183a8e699a4227fb0b7002f252c814098e66c4d1cd0644688f"}, ] +[[package]] +name = "zipp" +version = "3.19.2" +description = "Backport of pathlib-compatible object wrapper for zip files" +optional = false +python-versions = ">=3.8" +files = [ + {file = "zipp-3.19.2-py3-none-any.whl", hash = "sha256:f091755f667055f2d02b32c53771a7a6c8b47e1fdbc4b72a8b9072b3eef8015c"}, + {file = "zipp-3.19.2.tar.gz", hash = "sha256:bf1dcf6450f873a13e952a29504887c89e6de7506209e5b1bcc3460135d4de19"}, +] + +[package.extras] +doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] + [extras] qiskit = ["pytket-qiskit"] [metadata] lock-version = "2.0" python-versions = ">=3.10,<3.13" -content-hash = "10696cb8f0197ddfd1e4ed405568f9cc270ee8fd2fb08dae52983f3ce3b7fadc" +content-hash = "e33fbfa1a2607d1f6d7772e2da07aa94aca195f20c72b9e4d1313ecc8152ce9a" diff --git a/pyproject.toml b/pyproject.toml index 8ce9ef5..fabd11f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -2,8 +2,10 @@ name = "qnexus" version = "0.1.0" description = "Quantinuum Nexus python client." -authors = ["Your Name "] -readme = "README.md" +authors = ["Vanya Eccles ", "Aidan Keay ", "John Children "] +license = "Apache-2.0" +documentation = "https://nexus.quantinuum.com/docs" +readme = "quickstart.md" [tool.poetry.dependencies] python = ">=3.10,<3.13" @@ -30,8 +32,6 @@ pytest-randomly = "^3.15.0" respx = "^0.20.2" black = "^23.11.0" mypy = "^1.10.0" - -# Demo group can possibly be removed before release pylint = "^3.1.0" pandas-stubs = "^2.2.1.240316" types-colorama = "^0.4.15.20240311" @@ -40,25 +40,8 @@ pytest-html = "^4.1.1" pytest-icdiff = "^0.9" pytest-timeout = "^2.3.1" pytest-rerunfailures = "^14.0" -[tool.poetry.group.demo] -optional = true - -[tool.poetry.group.demo.dependencies] -numpy = "^1" -scipy = "^1" -openfermion = "^1.6.0" -pytket-qiskit = "*" - -[tool.poetry.group.docs] -optional = true +twine = "^5.1.1" -[tool.poetry.group.docs.dependencies] -furo = "^2022.9.29" -ipython = "^8.5.0" -jupyter-sphinx = "0.4.0" -nbsphinx = "^0.8.9" -sphinx = "^5.3.0" -sphinx-rtd-theme = "1.3.0" [tool.poetry.extras] qiskit = ["pytket-qiskit"] @@ -67,11 +50,6 @@ qiskit = ["pytket-qiskit"] name = "PyPI" priority = "primary" -[[tool.poetry.source]] -name = "cqcpython" -url = "https://cqcpythonrepository.azurewebsites.net/simple/" -priority = "supplemental" - [tool.pytest.ini_options] addopts = "--doctest-modules" diff --git a/qnexus/__init__.py b/qnexus/__init__.py index efb23a7..3df8e65 100644 --- a/qnexus/__init__.py +++ b/qnexus/__init__.py @@ -3,7 +3,7 @@ import nest_asyncio # type: ignore -from qnexus import context +from qnexus import context, filesystem from qnexus.client import ( auth, circuits, @@ -32,7 +32,6 @@ QuantinuumConfig, QulacsConfig, ) -from qnexus import filesystem # This is necessary for use in Jupyter notebooks to allow for nested asyncio loops try: diff --git a/qnexus/client/__init__.py b/qnexus/client/__init__.py index 085dda9..0236d7e 100644 --- a/qnexus/client/__init__.py +++ b/qnexus/client/__init__.py @@ -78,3 +78,15 @@ def build_refresh_request(self) -> httpx.Request: auth=AuthHandler(), timeout=None, ) + + +def reload_client() -> None: + """Reload the nexus client with new tokens.""" + global nexus_client # pylint: disable=global-statement + global config # pylint: disable=global-statement + config = get_config() + nexus_client = httpx.Client( + base_url=config.url, + auth=AuthHandler(), + timeout=None, + ) diff --git a/qnexus/client/auth.py b/qnexus/client/auth.py index 091d498..479e3aa 100644 --- a/qnexus/client/auth.py +++ b/qnexus/client/auth.py @@ -14,6 +14,7 @@ from rich.panel import Panel import qnexus.exceptions as qnx_exc +from qnexus.client import reload_client from qnexus.client.utils import consolidate_error, remove_token, write_token from qnexus.config import Config @@ -96,6 +97,9 @@ def login() -> None: # Fail for all other statuses consolidate_error(res=resp, description="Browser Login") # spinner.stop() + + reload_client() + return raise qnx_exc.AuthenticationError("Browser login Failed, code has expired.") @@ -107,6 +111,7 @@ def login_with_credentials() -> None: _request_tokens(user=user_name, pwd=pwd) + reload_client() print(f"✅ Successfully logged in as {user_name}.") diff --git a/qnexus/client/jobs/__init__.py b/qnexus/client/jobs/__init__.py index f130401..813cf15 100644 --- a/qnexus/client/jobs/__init__.py +++ b/qnexus/client/jobs/__init__.py @@ -15,8 +15,8 @@ import qnexus.exceptions as qnx_exc from qnexus.client import nexus_client from qnexus.client.database_iterator import DatabaseIterator -from qnexus.client.jobs import _compile -from qnexus.client.jobs import _execute +from qnexus.client.jobs import _compile, _execute +from qnexus.client.models import BackendConfig from qnexus.client.models.annotations import Annotations, PropertiesDict from qnexus.client.models.filters import ( CreatorFilter, @@ -32,7 +32,6 @@ TimeFilter, ) from qnexus.client.models.job_status import JobStatus -from qnexus.client.models import BackendConfig from qnexus.client.models.utils import AllowNone, assert_never from qnexus.client.utils import handle_fetch_errors from qnexus.config import Config diff --git a/qnexus/client/projects.py b/qnexus/client/projects.py index fcab279..611cbff 100644 --- a/qnexus/client/projects.py +++ b/qnexus/client/projects.py @@ -17,12 +17,11 @@ CreateAnnotations, PropertiesDict, ) -from qnexus.client.models.filters import ( +from qnexus.client.models.filters import ( # PropertiesFilter, # Not yet implemented ArchivedFilter, CreatorFilter, FuzzyNameFilter, PaginationFilter, - # PropertiesFilter, # Not yet implemented SortFilter, SortFilterEnum, TimeFilter, diff --git a/qnexus/references.py b/qnexus/references.py index 70e595b..a41d6b9 100644 --- a/qnexus/references.py +++ b/qnexus/references.py @@ -381,8 +381,6 @@ def df(self) -> pd.DataFrame: Field(discriminator="type"), ] -# TODO test that all subclasses of BaseRef are in this - ref_name_to_class: dict[str, Ref] = { config_type.__name__: config_type # type: ignore diff --git a/quickstart.md b/quickstart.md new file mode 100644 index 0000000..8c69d5a --- /dev/null +++ b/quickstart.md @@ -0,0 +1,18 @@ +# qnexus + +[Quantinuum Nexus](https://nexus.quantinuum.com) python client. + + +```python +import qnexus as qnx + +# Will open a browser window to login with Nexus credentials +qnx.login() + +# Dataframe representation of all your pending jobs in Nexus +qnx.jobs.get_all(job_status=["SUBMITTED", "QUEUED", "RUNNING"]).df() +``` + +Full documentation available at https://docs.quantinuum.com/nexus + +Copyright 2024 Quantinuum Ltd. \ No newline at end of file diff --git a/scripts/fmt.sh b/scripts/fmt.sh new file mode 100644 index 0000000..03133f4 --- /dev/null +++ b/scripts/fmt.sh @@ -0,0 +1,14 @@ +#!/bin/bash + +# Script to run formatting, liniting and type checking tools + +poetry run isort . +poetry run black . + +poetry run pylint qnexus/ +poetry run pylint tests/ +poetry run pylint integration/ + +poetry run mypy qnexus/ --namespace-packages +poetry run mypy tests/ --namespace-packages +poetry run mypy integration/ --namespace-packages diff --git a/shell.nix b/shell.nix index 1d68bcc..a8d5d98 100644 --- a/shell.nix +++ b/shell.nix @@ -3,7 +3,10 @@ pkgs.mkShell { name = "qnexus-dev-shell"; - buildInputs = with pkgs; [ poetry ]; + buildInputs = with pkgs; [ + poetry + commitizen + ]; LD_LIBRARY_PATH = "${pkgs.stdenv.cc.cc.lib}/lib"; }